Enhancing the effect of CAR-engineered T cells by means of nucleic acid vaccination
12186275 · 2025-01-07
Assignee
Inventors
- Ugur Sahin (Mainz, DE)
- Katharina REINHARD (Mainz-Kostheim, DE)
- Petra Simon (Mainz, DE)
- Karolina Anna MROZ (Wiesbaden, DE)
- Kathleen HOBOHM (Kelkheim i. Ts., DE)
Cpc classification
A61K35/17
HUMAN NECESSITIES
A61K2300/00
HUMAN NECESSITIES
A61K2300/00
HUMAN NECESSITIES
A61K2239/38
HUMAN NECESSITIES
A61K39/001113
HUMAN NECESSITIES
A61K39/00111
HUMAN NECESSITIES
A61K39/001102
HUMAN NECESSITIES
A61K40/11
HUMAN NECESSITIES
A61K9/127
HUMAN NECESSITIES
A61K40/4202
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
International classification
A61K39/00
HUMAN NECESSITIES
A61K35/17
HUMAN NECESSITIES
A61K39/395
HUMAN NECESSITIES
A61K9/127
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
Abstract
The present invention generally embraces the treatment of diseases by targeting cells expressing an antigen on the cell surface. In particular the invention relates to a method for stimulating, priming and/or expanding in vivo T cells genetically modified to express a chimeric antigen receptor (CAR) targeted to an antigen, comprising contacting the T cells with the antigen or a variant thereof in vivo. In one embodiment, the antigen or variant thereof is provided by administering a nucleic acid encoding the antigen or variant thereof.
Claims
1. A method for stimulating an immune response to a target cell population or target tissue expressing an antigen in a mammal, the method comprising: (a) transfecting a T cell of the mammal with a first nucleic acid encoding a chimeric antigen receptor (CAR) targeted to the antigen, wherein transfecting the T cell is in vivo; and (b) administering a second nucleic acid encoding the antigen or a variant thereof, wherein the second nucleic acid is in vitro transcribed RNA disposed in liposomes, in a pharmaceutically acceptable carrier, diluent, buffer, preservative, or excipient.
2. The method of claim 1, wherein the immune response is a T cell-mediated immune response.
3. The method of claim 1, wherein the immune response is an anti-tumor immune response, and the target cell population or target tissue is tumor cells or tumor tissue.
4. The method of claim 1, wherein the antigen is a tumor antigen.
5. The method of claim 1, wherein the antigen is selected from the group consisting of claudins, CD19, CD20, CD22, CD33, CD123, mesothelin, CEA, c-Met, PSMA, GD-2, and NY-ESO-1.
6. The method of claim 5, wherein the claudin is claudin 18.2 or claudin 6.
7. The method of claim 1, wherein the antigen is a pathogen antigen.
8. The method of claim 1, wherein the second nucleic acid encoding the antigen or variant thereof is expressed in cells of the mammal to provide the antigen or variant thereof.
9. The method of claim 1, wherein expression of the antigen or variant thereof is at the cell surface.
10. The method of claim 1, wherein the second nucleic acid encoding the antigen or variant thereof is transiently expressed in cells of the mammal.
11. The method of claim 1, wherein the in vitro transcribed RNA comprises modified nucleotides.
12. The method of claim 1, wherein the second nucleic acid is administered systemically.
13. The method of claim 12, wherein, after systemic administration of the second nucleic acid, the antigen or variant thereof is expressed in the spleen.
14. The method of claim 12, wherein, after systemic administration of the second nucleic acid, the antigen or variant thereof is expressed in antigen presenting cells.
15. The method of claim 14, wherein the antigen presenting cells are selected from the group consisting of dendritic cells, macrophages, and B cells.
16. The method of claim 12, wherein, after systemic administration of the second nucleic acid, the antigen or variant thereof is not expressed in the in lung and/or liver or expressed at a level below that of the spleen.
17. The method of claim 16, wherein, after systemic administration of the second nucleic acid, expression of the antigen or variant thereof in spleen is at least 5-fold the amount of expression in lung.
18. The method of claim 1, wherein the second nucleic acid is expressed in cells of the mammal to provide the antigen or variant thereof for binding by T cells expressing the CAR, said binding resulting in stimulation, priming, and/or expansion of the T cells expressing the CAR.
19. The method of claim 1, wherein the first nucleic acid is naked nucleic acid or nucleic acid formulated in a delivery vehicle.
20. The method of claim 19, wherein the delivery vehicle is a particle, a virus particle, or a liposome.
21. The method of claim 19, wherein the delivery vehicle comprises at least one lipid.
22. The method of claim 21, wherein the at least one lipid comprises at least one cationic lipid.
23. The method of claim 21, wherein the at least one lipid forms a complex with and/or encapsulates the first nucleic acid.
24. The method of claim 21, wherein the at least one lipid comprises at least a portion of a vesicle encapsulating the first nucleic acid.
25. The method of claim 1, wherein the first nucleic acid is DNA or RNA.
26. The method of claim 1, wherein the first nucleic acid is disposed in a viral-based system selected from the group consisting of a -retrovirus and a lentivirus.
27. The method of claim 1, wherein the first nucleic acid is stably or transiently expressed in T cells.
28. A method of treating a mammal having a disease, disorder, or condition associated with expression or elevated expression of an antigen, the method comprising: (a) transfecting a T cell of the mammal with a first nucleic acid encoding a chimeric antigen receptor (CAR) targeted to the antigen, wherein transfecting the T cell is in vivo; and; and (b) administering a second nucleic acid encoding the antigen or a variant thereof, wherein the second nucleic acid is in vitro transcribed RNA disposed in liposomes, in a pharmaceutically acceptable carrier, diluent, buffer, preservative, or excipient.
29. The method of claim 28, wherein the disease, disorder, or condition is cancer.
Description
FIGURES
(1)
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(8)
EXAMPLES
(9) The techniques and methods used herein are described herein or carried out in a manner known per se and as described, for example, in Sambrook et al., Molecular Cloning: A Laboratory Manual, 2.sup.nd Edition (1989) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. All methods including the use of kits and reagents are carried out according to the manufacturers' information unless specifically indicated.
Example 1: Materials and Methods
(10) Peripheral blood mononuclear cells (PBMCs), monocytes and dendritic cells (DCs) PBMCs were isolated by Ficoll-Hypaque (Amersham Biosciences, Uppsala, Sweden) density gradient centrifugation from buffy coats. Monocytes were enriched with anti-CD14 microbeads (Miltenyi Biotech, Bergisch-Gladbach, Germany). Immature DCs (iDCs) were obtained by differentiating monocytes for 5 days in cytokine-supplemented culture medium as described in Kreiter et al. (2007), Cancer Immunol. Immunother., CII, 56, 1577-87.
(11) Isolation and Activation of Spleen Cells
(12) Splenocytes were isolated of nave C57B16 mice und 1*10.sup.7 were transferred into culture media (RPMI1640) and were pre-activated 24 h with 2 g/ml anti-CD3 (eBioscience), 1 g/mL anti-CD28 (Novus Biologicals) and 5 ng/mL recombinant human (rh) IL-7 and 10 ng/mL rh IL-15 (Miltenyi).
(13) Retroviral Transduction of Murine Splenocytes
(14) Non tissue plates were coated with 2.1 g/cm.sup.2 RetroNectin (Clontech) over night at 4 C. After coating, RetroNectin were removed and then blocked 30 min at room temperature with 500 l PBS/2% BSA [w/v] for each well. BSA solution was removed and wells were washed once with PBS. PBS was replaced with retroviral (MLV-E) vectors containing either the CLDN6-CAR, the Control-CAR or eGFP transgenes and plate were centrifuged 15 min 1300 xg. This process was iterated 2 more times with fresh viral culture supernatant. Wells were then carefully flushed with PBS before 110.sup.6 24 h preactivated murine splenocytes were incubated on coated wells. After 4 h incubation, viral supernatants were added and spin transduction was performed with 300 xg 37 C. and cells were incubated 1 additional hour in incubator before viral supernatant was replaced with culture media containing 5 ng/mL IL-7 and 10 ng/mL IL-15. The whole transduction procedure was repeated one day later. After the second transduction step, viral supernatant were replaced by freshly culture media. For CFSE based proliferation assay, cells were harvested on day 7 after isolation and were ficoll cleaned with Ficoll-Paque PREMPUM (1.084) prior CFSE staining.
(15) Generation of In Vitro Transcribed (IVT) RNA and Transfer into Cells
(16) Generation of IVT RNA was performed as described previously (Holtkamp, S. et al. (2006), Blood 108, 4009-4017) and indicated amounts of IVT RNA (CLDN6 or control-antigen into murine BMDCs: 6 g; CARs into human T cells: 15-20 g; TCRs into human T cells: 20 g each chain; CLDN6 or gp100 into iDCs: 10 g) were added to cells suspended in 250 L X-VIVO 15 medium (Lonza, Basel, Switzerland) in a pre-cooled 4-mm gap sterile electroporation cuvette (Peqlab). Electroporation was performed with an ECM 830 Square Wave Electroporation System apparatus (BTX) (murine BMDCs: 400 V, 3 ms, 1 pulse, human T cells 500 V, 3 ms, 1 pulse, human iDCs: 300 V, 12 ms, 1 pulse).
(17) CFSE Based Proliferation Assay
(18) Murine cells were labeled with 5 M CFSE, human T cells with 0.8 M. Labeled cells were washed and co-cultured with IVT-RNA-transfected cells APCs (e.g. BMDCs or iDCs) at indicated effector target ratios. After 2 days or 4 days of co-culture, cells were harvested and proliferation was analyzed by flow cytometry based on the progressive halving of CFSE fluorescence within daughter cells following cell divisions.
(19) Flow Cytometric Analyses
(20) Cell surface expression of transduced CARs was analyzed using a fluorochrome-conjugated idiotype-specific antibodies (Ganymed pharmaceuticals) recognizing the scFv fragment and human IgG-PE antibodies which recognize the IgG1-linker (contained in all CAR constructs). Cell surface expression of CLDN6 was performed using the Alexa-Fluor-647-conjugated CLDN6-specific antibody IMABO27 (Ganymed pharmaceuticals). Flow cytometric analysis was performed on a FACS CANTO II flow cytometer using the FACS Diva software (BD Biosciences).
(21) Animals
(22) Mice were purchased from commercial providers. Age (8-10 weeks old) and sex (male or female) matched animals were used throughout the experiments.
(23) Retroviral Gene Manipulation and Preparation CAR T Cells for Adoptive T Cell Transfer
(24) Splenocytes of nave BALB/c-Thy1.1 were isolated and pre-activated by 2 g/mL Concanavalin A (Sigma-Aldrich) in the presence of 5 ng/mL rh IL-7 and 1.5-10 ng/mL rh IL-15 (Miltenyi). Pre-activated cells were transduced as described in section Retroviral transduction of murine splenocytes. Retroviral vectors containing either control-CAR or CLDN6-CAR encoded as well enhanced firefly luciferase (effLuc; Rabinovich B. A. et al. (2008) Proc. Natl. Acad. Sci. U.S.A 105, 14342-14346) and eGFP (enhanced green fluorescence protein) reporter gene, which expressed separately using self-cleaving T2A-elements (Szymczak A. L. et al. (2004) Nat. Biotechnol. 22, 589-594). After ficoll cleaning, cells were washed twice with PBS to remove serum proteins and were then prepared for adoptive cell transfer (ACT).
(25) Generation of Liposomal Formulated IVT RNA (RNA(Lip))
(26) Different amounts of CLDN6 or control-IVT RNA were complexed with F12-liposomes comprising DOTMA/DOPE (1,2-di-O-octadecenyl-3-trimethylammonium propane/1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine (2:1 mol:mol)) as previously described in WO2013/143683.
(27) Mouse Experiments
(28) 510.sup.6 CAR-T2A-effLuc-T2A-eGFP transduced BALB/c-Thy1.1.sup.+ T cells in 200 L were intravenously (i.v.) transferred into each BALB/c donor mice. Subsequently, mice were i.v. vaccinated with an F12:RNA ratio of 1.3:2 of RNA(Lip) 24 hours after adoptive T cells transfer (ACT). Peripheral blood donation and whole body bioluminescence imaging were performed.
(29) In Vivo Luciferase Imaging (BLI)
(30) Expansion and distribution of CAR-effLuc-GFP transduced T cells were evaluated by in vivo bioluminescence imaging using the IVIS Lumina imaging system (Caliper Life Sciences). Briefly, an aqueous solution of D-luciferin (80 mg/kg body weight; Perkin Elmer) was injected i.p. 1 h (day 0), 72 h (day 3) and 96 h (day 4) after ACT. 5 min thereafter, emitted photons were quantified (integration time of 1 min). In vivo bioluminescence in regions of interest (ROI) were quantified as average radiance (photons/sec/cm2/sr) using IVIS Living Image 4.0 Software. The intensity of transmitted light originating from luciferase expressing cells within the animal was represented as a greyscale image, where black is the least intense and white to dark-grey the most intense bioluminescence signal. Greyscale reference images of mice were obtained under LED low light illumination. The images were superimposed using the Living Image 4.0 software.
(31) Flow Cytometry of Peripheral Blood of Mice
(32) Cell composition of transferred Thy1.1.sup.+ T cells were assed 72 h (day3) after ACT in hypothonicly lysed peripheral blood samples (ACK buffer; GIBCO). Fluorochrome-coupled monoclonal antibodies detecting murine CD90.1/Thy1.1 (BD Pharmingen), CD8a (eBioscience) and CD4 (BD Pharmingen) were used. Flow cytometric data were acquired on a FACS-Canto II analytical flow cytometer and analyzed by using FlowJo X (Tree Star) software.
Example 2: Expansion of CAR Engineered T Cells with IVT RNA Pulsed APCs In Vitro
(33) An important prerequisite for the proliferation and persistence of CAR-engineered T cells in the patient is the presence of antigen as demonstrated by promising clinical trial results of CD19-specific CARs in hematologic malignancies. In analogy to the expansion of endogenous T cells by RNA immunization via TCR stimulation by MHC-peptide complexes, we wanted to analyze, if adoptively transferred CAR T cells could also be expanded using Liposome mediated RNA-vaccination of target cells to provide the natural surface expressed antigen for CAR T cell stimulation. Such a switch could make it possible to initially transfer small amounts of CAR-engineered T cells into the patients. If this transfer resulted in no severe side effects in patients, engineered T cells could then be expanded with liposomal formulated RNA. Furthermore this method could be in some circumstances an opportunity for tumor patients to avoid chemotherapy that artificially creates space for adoptive T cell transfer.
(34) We evaluated the expansion concept in vitro for a CAR that specifically targets the tumor antigen CLDN6. The CLDN6-CAR represents a classical 2nd generation CAR that contains the signaling and costimulatory moieties of CD3 and CD28, respectively. A deletion of the Ick binding moiety in the CD28 endodomain abrogates IL-2 secretion upon CAR engagement to prevent induction of regulatory T cells (Kofler D. M. et al., (2011) Molecular Therapy 19 (4), 760-767). A modification of the IgG1 Fc spacer domain in the extracellular moiety of the CAR avoids off-target activation and unintended initiation of an innate immune response (Hombach A. et al., (2010) Gene Therapy 17, 1206-1213).
(35) First we wanted to analyze, if CAR-engineered human T cells could also be expanded using RNA-transfected target cells to provide natural CLND6 for CAR T cell stimulation. A CFSE based in vitro co-culture assay was performed using CLDN6-CAR-RNA transfected human CD8+ T cells together with autologous iDCs transfected with titrated amounts of CLDN6 IVT RNA. The resulting dose-dependent CLDN6 surface expression was assessed by flow cytometry after staining with a CLDN6-specific antibody (
(36) In order to translate our strategy in an in vivo experiment, we first analyzed the proliferative capacity of murine CLDN6-CAR-expressing T cells using a similar experimental setup. To that aim splenocytes of C57Bl/6 mice were transduced with retroviral vectors containing either the CLDN6-CAR or a control CAR or no transgene.
(37) As CARs provide MHC or HLA independent scFv-mediated antigen-binding they are functional in both CD4.sup.+ and CD8.sup.+ T cells. Therefore, we first analyzed the CAR surface expression on CD4+ and CD8.sup.+ T cells after retroviral transduction of both CARs on murine splenocytes (
(38) This result confirmed the functionality of the CLDN6-CAR in murine T cells in vitro and demonstrated that murine CLDN6-CAR T cells are able to strongly proliferate in response to murine BMDCs expressing the human CLDN6 antigen after RNA transfer. This provides the basis for the testing of our proposed strategy in an in vivo environment using adoptive transfer of murine CAR-expressing T cells combined with liposomal formulated RNA-vaccination in a syngenic animal model.
Example 3: Expansion of CAR Engineered T Cells with IVT RNA Pulsed APCs In Vivo
(39) In order to test this innovative concept in a physiological setting, we established a syngeneic mouse model which is fully immunocompetent and, hence, more closely reflects the immune status of the patients and allows for analyzing persistence of transferred CAR T cells.
(40) An antigen e.g. CLDN6-encoding, liposomally formulated RNA (RNA(Lip)) shall be used to expand CAR T cells in vivo in a controlled fashion. RNA(Lip) selectively targets APCs like DCs in secondary lymphoid organs, the spleen in particular. The interaction of CAR-T cells with APCs that ectopically express CLDN6 after RNA(Lip) uptake is expected to support adequate CAR-T cell activation and proliferation by providing natural co-stimulation in situ. To facilitate the expansion and fate of CAR-T cells in vivo, the pES12.6-CLDN6-CAR vector and a control CAR vector were modified to express luciferase (effLuc) and eGFP reporter genes downstream of the respective CAR separated by viral T2A sequences. Of note, surface expression and antigen specificity of CLDN6-CAR and the control-CAR were not significantly affected by coexpression of luciferase and GFP in CAR-transduced murine T cells (data not shown).
(41) BALB/c mice were engrafted with 510.sup.6 CAR-reporter transduced congenic Thy1.1.sup.+ murine bulk T cells (approx. 2.510.sup.8 cells/kg body weight) without prior lympho-depletion. 200 L RNA(Lip) containing either 25 g human CLDN6 or a control RNA were administered retroorbital into mice 1 day after adoptive CAR-T cell transfer (
(42) After having demonstrated that CAR-T cells can successfully be expanded in situ using RNA(Lip) encoding the respective antigen (proof of principle), we investigated whether this effect correlates with the amount of RNA(Lip) used in a dose response study. For this purpose CLDN6-CAR transduced murine Thy1.1.sup.+ T cell-engrafted BALB/c mice were treated (as described above) with 0.4-25 g of CLDN6-RNA(Lip). A dose-dependent expansion of CLDN6-CAR T cells could be observed in situ via BLI. Even the administration of low dose of CLDN6-encoding RNA (0.4-1 g/mouse) led to increase in light emission in mice compared to the non-treated group (
(43) These data strongly support the idea that controlled CAR-T cell expansion directly in the patient using RNA(Lip) technology is feasible.