DEVICE AND METHOD FOR ANALYZING BIOLOGICAL SAMPLES
20230083871 · 2023-03-16
Assignee
Inventors
Cpc classification
B01L2200/10
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502715
PERFORMING OPERATIONS; TRANSPORTING
C12Q1/6806
CHEMISTRY; METALLURGY
B01L2300/0816
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/087
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/12
PERFORMING OPERATIONS; TRANSPORTING
B01L7/52
PERFORMING OPERATIONS; TRANSPORTING
B01L2400/0415
PERFORMING OPERATIONS; TRANSPORTING
International classification
Abstract
The invention relates to a device (1) for analyzing biological samples (S) comprising a substrate (2) for receiving a biological sample (S), wherein the substrate (2) comprises or consists of a fibrous material (F) configured to form a stationary phase which retains molecules in a biological sample (S) dissolved in a liquid mobile phase depending on molecular weight and/or polarity of the molecules, a first electrode (41) and a second electrode (42), which are arranged along a first axis (A1) and configured to generate an electric field acting along the first axis (A1) when an electric potential difference is provided between the first electrode (41) and the second electrode (42), so that charged molecules contained in the biological sample (S) are movable through the substrate (2) along the first axis (A1) and/or separable by their molecular weight, their polarity and/or their charge, wherein the substrate (2) comprises a chemical lysing agent (L) capable of lysing the biological sample (S). Furthermore, a method for analyzing biological samples (S) using the device (1) is provided.
Claims
1. A device (1) for analyzing biological samples (S) comprising a substrate (2) for receiving a biological sample (S), wherein the substrate (2) comprises or consists of a fibrous material (F) configured to form a stationary phase which is capable of retaining molecules in a biological sample (S) dissolved in a liquid mobile phase depending on molecular weight and/or polarity of the molecules, a first electrode (41) and a second electrode (42), which are arranged along a first axis (A1) and configured to generate an electric field acting along the first axis (A1) when an electric potential difference is provided between the first electrode (41) and the second electrode (42), so that charged molecules contained in the biological sample (S) are movable through the substrate (2) along the first axis (A1) and/or separable by their molecular weight, their polarity and/or their charge, wherein the substrate (2) comprises a chemical lysing agent (L) capable of lysing the biological sample (S), characterized in that the device (1) comprises a third electrode (43), wherein the second electrode (42) and the third electrode (43) are arranged along a second axis (A2) which is non-parallel to the first axis (A1) and configured to generate an electric field acting along the second axis (A2) when an electric potential difference is applied between the second electrode (42) and the third electrode (43).
2. The device (1) according to claim 1, characterized in that the lysing agent (L) is disposed within the substrate (2) in dry form, wherein the lysing agent (L) is dissolvable upon applying a liquid biological sample (S) to the substrate (2), such that the biological sample (S) is lysed.
3. The device (1) according to claim 1, characterized in that the substrate (2) comprises a barrier structure (B) which is impermeable to the liquid mobile phase, wherein the barrier structure (B) forms at least one channel in the substrate (2), is the channel being permeable to the liquid mobile phase, and the channel being limited by the barrier structure (B).
4. The device (1) according to claim 1, characterized in that the first electrode (41), the second electrode (42) and/or the third electrode (43) is embedded into the fibrous material (F) of the substrate (2) or connected to the fibrous material (F) of the substrate (2), particularly wherein the first electrode (41), the second electrode (42) and/or the third electrode (43) is printed onto the substrate (2).
5. The device (1) according to claim 1, characterized in that the second electrode (42) comprises a cross-sectional area perpendicular to the first axis (A1), which is smaller than a cross-sectional area perpendicular to the first axis (A1) of the first electrode (41), particularly so that charged molecules in the biological sample (S) are focused in the substrate (2) while moving through the electric field between the first electrode (41) and the second electrode (42).
6. The device (1) according to claim 1, characterized in that the first electrode (41) forms a grid structure (41b).
7. The device (1) according to claim 1, characterized in that a DNA polymerase and PCR primers are disposed in the substrate (2), so that a DNA sequence of the biological sample (S) can be amplified by PCR by means of the DNA polymerase if the PCR primers contain complementary DNA sequences to said DNA sequence.
8. The device (1) according to claim 1, characterized in that the device (1) comprises a polymer gel (H), particularly a hydrogel, in contact with the substrate (2), so that liquid is exchangeable between the polymer gel (H) and the substrate (2), particularly wherein the polymer gel (H) is switchable by setting a physical parameter, particularly changing a temperature, a pH, or an ionic strength, providing electromagnetic radiation, or initiating a chemical reaction, so that liquid is exchanged between the polymer gel (H) and the substrate (2).
9. The device (1) according to claim 1, characterized in that the device (1) comprises a heating element (70) for heating, particularly periodic heating, of the substrate (2), particularly wherein the heating element (70) is formed as a heating electrode, wherein the heating electrode is connected to an outside of the device (1) via electrically conductive contact tabs (71), wherein ends (72) of the first and second contact tabs (71) are configured to be electrically connected to the poles of a voltage source, so that an electric current flows through the heating electrode thereby heating the substrate (2) by its electric resistance.
10. The device (1) according to claim 1, characterized in that the substrate (2) comprises a marker for labeling molecules contained in the biological sample, particularly wherein the marker comprises a dye or wherein the marker is detectable by its redox properties.
11. The device (1) according to claim 1, characterized in that the device is at least partially transparent, so that the molecules contained in the biological sample (S) can be analyzed by an optical detector (80), particularly a camera, more particularly a camera contained in a handheld device such as a smart phone or a tablet computer.
12. The device (1) according to claim 1, characterized in that the device (1) comprises a plurality of layers (10, 20, 30) comprising said fibrous material (F), wherein the layers (10, 20, 30) are arranged on top of each other, so that the fibrous material (F) of the layers (10, 20, 30) forms the substrate (2), wherein the layers (10, 20, 30) extend in respective planes which are non-parallel to the first axis (A1), so that charged molecules contained in the biological sample (S) are movable through the layers (10, 20, 30) by means of the electric field acting along the first axis (A1) between the first electrode (41) and the second electrode (42), particularly wherein the planes in which the layers (10, 20, 30) extend, are parallel to the second axis (A2), so that the charged molecules contained in the biological sample (S) are movable in the respective layer (10, 20, 30) and separable by their molecular weight, polarity and/or charge.
13. The device (1) according to claim 12, characterized in that the device (1) comprises a first layer (10), wherein the fibrous material (F) of the first layer (10) comprises the lysing agent (L), a second layer (20) in contact with the first layer (10), wherein the second layer (20) is configured to filtrate the biological sample (S) when the biological sample (S) passes through the second layer (20), and a third layer (30) in contact with the second layer (20), wherein the third layer (30) comprises said second electrode (42) and said third electrode (43), such that molecules in said biological sample (S) are separable by molecular weight, polarity and/or charge in the third layer (30) using the electric field acting between the second electrode (42) and the third electrode (43), wherein particularly the fibrous material (F) of the third layer (30) comprises said marker and/or said DNA polymerase and said PCR primers, particularly wherein the fibrous material (F) of the third layer (30) is in contact with said heating element (70), particularly wherein said polymer gel (H) is arranged in said first layer (10) and/or said second layer (20).
14. A method for analyzing biological samples (S) by means of the device (1) according to claim 10, wherein a. a biological sample (S) is applied to the substrate (2), such that the biological sample (S) is in contact with said lysing agent (L), resulting in lysis of the biological sample (S); b. an electric potential difference is provided between the first electrode (41) and the second electrode (42), such that the biological sample (S) moves through the substrate (2) and is separated by its molecular weight, polarity and/or charge; c. optionally, the substrate (2) is periodically heated, such that a DNA sequence of the biological sample (S) is amplified by PCR in the substrate (2); d. optionally, an electric potential difference is provided between the second electrode (42) and the third electrode (43), such that the biological sample (S) is separated by its molecular weight, polarity and/or charge, particularly wherein the current or the voltage between the second electrode (42) and the third electrode (43) is measured over time, wherein properties of the biological sample (S) are derived from the measured current or voltage; and e. optionally, the biological sample (S) is analyzed by detecting the marker in the substrate (2).
Description
[0150] The invention is further illustrated by the following examples and figures, from which further embodiments and advantages can be drawn. These examples are meant to illustrate the invention but not to limit its scope.
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[0160] In the example described here, the liquid mobile phase to be used with the device 1 is particularly aqueous. Consequently, the fibrous material F is water-permeable, wherein the fibrous material F is particularly paper. In addition, the cover 60, the cover layers 50, and the barrier structure B is particularly water-impermeable. Of course, if a hydrophobic liquid mobile phase (e.g. based on an organic solvent) is to be used with the device 1, the fibrous material F is particularly hydrophobic (and therefore permeable to the hydrophobic liquid mobile phase), and the cover 60, the cover layers 50 and the barrier structure B are particularly hydrophilic or water-permeable (and therefore impermeable to the hydrophobic liquid mobile phase).
[0161] The cover 60 and the two cover layers 50 protect the first layer 10, the second layer 10, and the third layer 30 from ingress of water and contaminations, particularly during transport and storage of the device 1. The upper cover layer 50 comprises an opening 51 (particularly having a rectangular shape) through which the biological sample S may be applied to the first layer 10 after the cover 60 has been removed.
[0162] In the embodiment depicted in
[0163]
[0164]
[0165] As shown in
[0166] The first layer 10 further comprises a first electrode 41 shaped as grid structure 41b which comprises parallel rods or bars 41c from an electrically conductive material extending in the plane of the first layer 10. The bars 41c are surrounded by a frame 41d (particularly having a rectangular shape) arranged around the first area 2a of accessible fibrous material F. A contact tab 41a, particularly from the same electrically conductive material, connects the electrode 41, particularly the frame 41d, to an edge of the first layer 10, such that the contact tab 41 can be electrically connected to a positive or negative pole of an external voltage source. The electrode 41 is particularly printed onto the fibrous material F of the first layer 10, i.e. by an electrically conductive ink.
[0167] Furthermore, the first layer 10 comprises a circular opening 11 harboring a switchable polymer gel H. The opening 11 is separated from the first area 2a of accessible fibrous material F forming part of the substrate 2 by the barrier structure B, such that liquid released from the polymer gel H cannot access the substrate 2 via the first layer 10.
[0168] Similar to the first layer 10, the second layer 20 comprises a second area 2b of uncoated, accessible fibrous material F (particularly having a rectangular shape) surrounded by the barrier structure B, the uncoated fibrous material F of the second area 2b forming a part of the substrate 2. Said second area 2b of the second layer 20 is congruent with the first area 2a of the first layer 10 when the first layer 10 and the second layer 20 are placed on top of each other. The second layer 20 also comprises a circular opening 21 which is congruent with the opening 11 of the first layer 10 when the first layer 10 and the second layer 20 are placed on top of each other. The opening 21 may harbor a further polymer gel H, or the openings 11, 21 of the first layer 10 and the second layer 20 may jointly harbor a polymer gel H.
[0169] The third layer 30 comprises a third area 2c of freely accessible (i.e. uncovered by the barrier structure B) fibrous material F (particularly having a rectangular shape) surrounded by the barrier structure B. The third area 2c is larger (extends further to the right in
[0170] The fibrous material F of the third area contains PCR reagents P (i.e. a DNA polymerase, PCR primers and deoxy ribonucleotides), which are particularly provided in dry or lyophilized form and are particularly equally distributed in the fibrous material F of the third layer 30. Thereby, if a liquid biological sample S containing DNA or RNA with sequences complementary to the PCR primers provided in the fibrous material enters the fibrous material F of the third layer 30, and if the third area 2c of fibrous material F is periodically heated and cooled to appropriate melting, annealing and elongation temperatures, the complementary DNA or RNA sequence may be amplified by PCR within the fibrous substrate F.
[0171] Furthermore, the third layer 30 comprises a second electrode 42 and a third electrode 43 which are arranged on opposite edges of the third area 2c and connected to respective outer edges of the third layer 30 by contact tabs 42a, 43a, such that the second electrode 42 and the third electrode 43 may be electrically connected to poles (particularly opposite poles of an external voltage source via the contact tabs 42a, 43a.
[0172] Moreover, when the first layer 10, the second layer 20 and the third layer 30 are placed on top of each other, the polymer gel H or polymer gels H disposed in the openings 11, 21 of the first layer 10 and the second layer 20 are in contact with the third area 2c of the third layer 30, such that liquid may be released from the polymer gel(s) H into the fibrous material F of the third layer 30, and/or such that liquid may be withdrawn from the fibrous material F of the third layer 30 into the polymer gel(s) H, as further specified below.
[0173] In particular, to manufacture the layers 10, 20, 30, thin sheets of the fibrous material F are provided and optionally cut into an appropriate size. Subsequently, the layers are particularly coated with a hydrophobic material, such as wax, to form the barrier structure B, and the openings 11, 21 of the first and second layer 10, 20 are particularly cut out. The first electrode 41, the second electrode 42 and the third electrode 43 may then be printed onto the first layer 10 and the third layer 30 using an electrically conductive ink. Finally, the lysing agent L may be applied to the first layer 10, particularly by applying a liquid solution containing the lysing agent L onto the first rectangular area 2a, and subsequently drying the first layer 10. Likewise, the PCR reagents P may be applied onto the third area 2c of the third layer as a liquid solution and subsequently dried. The layers 10, 20, 30 may then be stacked above each other, and the polymer gel H may be applied in the openings 11, 21 of the first layer 10 and/or second layer 20. Finally, the cover layers 50 and cover 60 may be placed on the stack as depicted in
[0174] The use of the device 1 is described hereafter with reference to
[0175] As shown in
[0176] Since the first area 2a of fibrous material F in the first layer 10 is in contact with the second area 2b of the second layer 20 and the third area 2c of the third layer 30, the lysed liquid biological sample S is subsequently drawn into the fibrous material F of the second area 2b and the third area 2c by capillary forces. Therein, the liquid, in which the biological sample S is dissolved, serves as a mobile phase and the fibrous material F of the layers 10, 20, 30 serves as a stationary phase, whereby the fibrous material F, particularly the second area 2b of the second layer 20, filtrates the biological sample S by separating the components of the biological sample S by molecular weight due to the chromatographic effect. In this manner, in particular, larger particles, such as cell debris, may be separated from the biomolecules (i.e., DNA, RNA and proteins) of the biological sample, and particularly remain in the fibrous material F of the second layer 20. Optionally, the fibrous material F may also be adapted to separate the biological sample by polarity, depending on the hydrophobicity of the fibrous material F and the solvent of the biological sample S.
[0177] To facilitate the movement of the biological sample from the first layer 10 to the second layer 20 and the third layer 30, polymer gels H capable of swelling (taking up liquid) may be placed in the openings 11, 21 of the first and second layer 10, 20 to draw the solvent of the biological sample through the first layer 10, the second layer 20 and the third layer 30.
[0178] Alternatively or additionally, the device 1 may be placed in a liquid reservoir serving as a mobile phase for chromatography and/or as electrophoresis buffer.
[0179] As illustrated in
[0180] In the setup depicted in
[0181] Thus, as shown in
[0182] In particular, as illustrated in
[0183] Finally, as shown in
[0184] The voltage source may be configured to provide a constant voltage between the second electrode 42 and the third electrode 43 or a constant current through the third layer 30. During electrophoresis, the current in the third layer 30 may be measured over time using a amperemeter (in case of a constant voltage provided by the voltage source) or the voltage between the second electrode 42 and the third electrode 43 may be measured over time using a voltmeter (in case of a constant current provided by the voltage source, the method of measurement being termed cyclic voltammetry). The resulting time trace of the current or voltage may be used to analyze properties of the biomolecules, particularly nucleic acids, of the biological sample S. As an alternative, the properties of the biomolecules may also be analyzed by coulometry or by an impedance measurement.
[0185] Alternatively or additionally, the biomolecules in the biological sample (or amplified from the biological sample) may be analyzed by a marker molecule, which particularly may be disposed in the fibrous material F of the third layer 30 in dry or lyophilized form prior to entry of the biological sample S. In case of nucleic acids, the marker molecule may for instance be a hybridization probe such as a molecular beacon, which is capable of specifically binding to a target DNA or RNA sequence. When proteins are to be detected, the marker molecule may be e.g. an antibody, which specifically binds to an epitope in the protein of interest. The marker molecule may be coupled (e.g. covalently bound) to an optically detectable molecule, such as a dye or a fluorophore, which changes color or emits luminescence or fluorescence light upon specific binding of the marker to the biomolecule of interest. Alternatively, the marker may also comprise one or more substance(s) which undergoe(s) a chemical reaction resulting in a change of color or emission of fluorescent or luminescent light. In case of fluorescence, the device may be illuminated with light of wavelengths overlapping with the absorbance spectrum of the fluorophore, e.g. by an external light source.
[0186] To detect the light emitted by the marker, an external optical detector 80 may be used. An example of this is depicted in
[0187] The device 1 and particularly the applied marker M may be configured, such that the emitted light may be detected by an off-the-shelf camera of a mobile device, such as a smart phone or a tablet computer. This improves usability of the device 1, particularly for applications outside of a laboratory, such as on-site analysis of environmental samples.
[0188] As an alternative to optical detection, marker molecule may also be detectable by its redox properties.
[0189] Of course, the described analysis of biomolecules in the biological sample S may be performed with and without previous electrophoresis.
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[0192] The heating electrodes comprise a grid 73 composed of parallel rods 74 surrounded by a rectangular frame 75 and contact tabs 71 connecting the grid 73 to an edge of the respective layer, where they can be connected at ends 72 to the poles of a voltage source to generate a current through the heating electrodes and generate heat due to the electrical resistance of the heating electrodes.
[0193] Such integrated heating electrodes obviate the need for an external heating device.
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TABLE-US-00001 List of reference numerals 1 Device for analyzing biological samples 2 Substrate 2a First area 2b Second area 2c Third area 10 First layer 11 Opening 20 Second layer 21 Opening 30 Third layer 41 First electrode 41a Contact tab 41b Grid stucture 41c Rod 41d Frame 42 Second electrode 42a Contact tab 43 Third electrode 43a Contact tab 50 Cover layer 60 Cover 61 Lid 62 Hinge 70 Heating element 70a Heating of the PCR reagents 70b Heating of the polymer gel 71 Contact tab 72 End 73 Grid 74 Rod 75 Frame 80 Optical detector 81 Lens 91 Positive pole 92 Negative pole 100 Fourth layer A1 First axis A2 Second axis B Barrier structure F Fibrous material H Polymer gel L Lysis agent P PCR reagents S Biological sample SP Sample path