METHOD FOR MEASUREMENT OF PEPTIDIC DEGRADATION PRODUCTS OF A PROTEOLYTIC CASCADE IN BLOOD SAMPLES

Abstract

The invention discloses a method for measurement of peptidic degradation products of a proteolytic cascade in biological samples, especially blood samples, wherein the sample is incubated until a steady state equilibrium is reached for at least one peptidic degradation product involved in said proteolytic cascade and wherein said at least one peptidic degradation product in steady state equilibrium of the proteolytic cascade is quantified in the sample.

Claims

1. A method for measurement of peptidic degradation products of a proteolytic cascade in a biological sample comprising: incubating a biological sample ex vivo until a steady state equilibrium is reached for at least one peptidic degradation product involved in a proteolytic cascade; and quantifying at least one peptidic degradation product in a steady state equilibrium concentration in the sample.

2. The method of claim 1, wherein the sample is a blood sample.

3. The method of claim 2, where the sample comprises full blood, plasma, serum, fresh or frozen anti-coagulated full blood, or fresh or frozen anti-coagulated plasma.

4. The method of claim 1, wherein at least two degradation products of the proteolytic cascade are quantified in the sample in steady state equilibrium concentration.

5. The method of claim 4, wherein a ratio is calculated of the steady state equilibrium quantifications of the at least two peptidic degradation products.

6. The method of claim 1, wherein the sample is incubated for up to 300 minutes.

7. The method of claim 1, wherein the sample is incubated at a temperature of 30 to 50 C.

8. The method of claim 1, wherein the proteolytic cascade is a renin-angiotensin system (RAS) or a bradykinin system, or both.

9. The method of claim 1, wherein the peptidic degradation product is angiotensinogen, angiotensin I, angiotensin 2-10, angiotensin II, angiotensin III, angiotensin IV, angiotensin 1-9, angiotensin 1-7, angiotensin 2-7, angiotensin 3-7, angiotensin 1-5, kallidin, bradykinin 1-9, bradykinin 2-9, bradykinin 1-8, bradykinin 1-7, or bradykinin 1-5.

10. The method of claim 1, further defined as comprising quantifying angiotensin I, angiotensin II, angiotensin 1-7, and angiotensin 1-5.

11. The method of claim 1, further defined as comprising quantifying angiotensin II, angiotensin 1-7, and angiotensin 1-5.

12. The method of claim 1, further defined as comprising quantifying bradykinin 1-9, bradykinin 1-8, bradykinin 1-7, and bradykinin 1-5.

13. The method of claim 1, further defined as comprising quantifying bradykinin 1-8, bradykinin 1-7, and bradykinin 1-5.

14. The method of claim 1, further comprising adding one or more protease inhibitor and/or one or more chaotropic agent after the incubation until a steady state equilibrium is reached for at least one peptidic degradation product.

15. The method of claim 1, wherein substrates or substrate analogues of any enzyme(s) involved in the proteolytic cascade are not added before and/or during the incubation until a steady state equilibrium is reached.

16. The method of claim 1, wherein the matrix of the biological sample and/or the concentrations of the components of the proteolytic cascade to be analysed are not modified.

17. The method of claim 1, wherein the at least steady state equilibrium peptide level does not vary more than 15%, 14%, 13%, 12%, 11%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or 1% over a time period of at least 30 minutes, 60 minutes, 90 minutes, 120 minutes, 150 minutes, 180 minutes, 210 minutes, 240 minutes, 270 minutes or 300 minutes.

18. The method of claim 1, wherein the proteolytic cascade comprises at least two consecutive proteolytic reactions.

19. The method of claim 17, wherein at least one of the at least two proteolytic reactions is performed by a feeding enzyme, said feeding enzyme having a turnover rate, and wherein the turnover rate of the feeding enzyme does not vary more than 15%, 14%, 13%, 12%, 11%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or 1% over a time period of at least 30 minutes, 60 minutes, 90 minutes, 120 minutes, 150 minutes, 180 minutes, 210 minutes, 240 minutes, 270 minutes or 300 minutes.

20. A kit for practicing the method of claim 1, comprising one or more chemical, biochemical and/or biotechnological reagent, further defined as a peptide, enzyme, enzyme inhibitor, buffer, solvent, chaotropic agent, or detergent.

21. The kit of claim 20, further comprising one or more chemical, biochemical and/or biotechnological laboratory item, further defined as a solid phase extraction material, purification materials, or container.

22. The kit of claim 20, further comprising one or more biological sample further defined as comprising a blood sample, serum sample, plasma sample, or tissue sample.

23. The kit of claim 20, further comprising one or more protease inhibitor or inhibitor cocktail, feeding substrate, or blood collection tube.

24. The kit of claim 20, further comprising one or more anti-coagulant, one or more standard, one or more quality control, one or more solid phase extraction material, or one or more solvents.

25. A physical or electronic representation of the result of quantification of the method of claim 1, comprising at least two quantified amounts of the at least two degradation products provided in sequence of the proteolytic cascade.

26. The physical or electronic representation of claim 25, comprising quantified amounts of at least two of angiotensin I, angiotensin 2-10, angiotensin II, angiotensin III, angiotensin IV, angiotensin 1-9, angiotensin 1-7, angiotensin 2-7, angiotensin 3-7, angiotensin 1-5, kallidin, bradykinin 1-9, bradykinin 2-9, bradykinin 1-8, bradykinin 1-7, and bradykinin 1-5 in dependence of their relative quantities.

27. The physical or electronic representation of claim 25, comprising quantified amounts of angiotensin I, angiotensin 2-10, angiotensin II, angiotensin III, angiotensin IV, angiotensin 1-9, angiotensin 1-7, angiotensin 2-7, angiotensin 3-7, and angiotensin 1-5 in dependence of their relative quantities.

28. The physical or electronic representation of claim 25, comprising quantified amounts of kallidin, bradykinin 1-9, bradykinin 2-9, bradykinin 1-8, bradykinin 1-7, and bradykinin 1-5 in dependence of their relative quantities.

Description

[0109] The invention is further described by the following examples and the figures, of course without being limited thereto:

[0110] FIGS. 1A-1C shows the RAS steady state equilibrium (RSSE). (A) Heparin blood was collected from a healthy donor and incubated at 37 C. After indicated time periods protease inhibitor cocktail was added to an aliquot of the heparinised blood sample to conserve the steady state equilibrium. Concentrations of angiotensin 1-10 (dark bars) and angiotensin 1-8 (light bars) are shown and compared with an aliquot of the blood sample collected from the same donor, which was stabilised immediately during collection (ICE, t=0). (B) Steady state equilibrium angiotensin concentrations in heparinised blood were determined in the absence (dark bars; control) and presence of indicated RAS inhibitors (light bars). The steady state equilibrium was frozen by adding a protease inhibitor cocktail to the samples immediately (0 h) or after 2 h and 4 h of incubation at 37 C. (C) Angiotensin concentrations in heparinised blood were determined in the absence (light bars; control) and presence of EDTA and AEBSF (dark bars). The incubations were frozen by adding a protease inhibitor cocktail to the samples immediately (0 h) or after 2 h and 4 h of incubation at 37 C. Concentrations of angiotensin 1-10 and angiotensin 1-8 are shown.

[0111] FIGS. 2A1-2C3 shows the pharmacologic manipulation of the RAS steady state equilibrium. Indicated agents were added prior to an incubation period of 2 h followed by LC-MS/MS based RSSE-Fingerprinting. Results are shown in fingerprint illustrations displaying angiotensin peptide concentrations as differently sized spheres and metabolising enzymes represented by arrows and letters. Annotations beneath the spheres are constituted by peptide name and peptide concentration in pg/ml blood. RSSE-Fingerprints are shown for low-molecular-weight RAS inhibitors (A), exogenously added RAS enzymes (B) and combinations of both (C).

[0112] FIGS. 3A-3C shows matrix dependence of RSSE-Fingerprinting. Heparinised blood, plasma and plasma subjected to one freeze/thaw cycle were prepared from the same donor and subjected to RSSE-Fingerprinting performing a 2h37 C. incubation followed by conserving the steady state equilibrium adding a protease inhibitor cocktail to the samples and LC-MS/MS analysis. Fingerprint graphs of control samples without pharmacologic manipulation (A) are given and compared with samples where Amastatin (B) or ACE2 in combination with Lisinopril (C) where added before the incubation period.

[0113] FIGS. 4A-4C shows RASas well as RSSE-Fingerprinting in healthy volunteers. Blood samples were collected from healthy volunteers in the presence of protease inhibitor cocktail to conserve angiotensin peptide levels as present in vivo, i.e. prior to any equilibration (RAS-Fingerprint or in vivo RAS-Fingerprint) and compared to heparinised blood and plasma subjected to incubation until a steady state equilibrium is reached (RSSE-Fingerprint or ex vivo Fingerprint) in parallel. The mean RAS-Fingerprint (conserved in vivo peptide levels) and the mean RSSE-Fingerprints (conserved ex vivo generated steady state equilibrium peptide levels) for heparin blood and plasma for 12 healthy volunteers are shown (A). The molar SSE-Ratio for ACE [fmol/ml Ang 1-8]/[fmol/ml Ang 1-10] was calculated and presented in the together with corresponding angiotensin 1-10 and angiotensin 1-8 concentrations in pg/ml and fmol/ml for each subject donor (B). The tables show the values for peptide levels constituting the RAS-Fingerprints (Table 1), RSSE-Fingerprints from Blood (Table 2) and RSSE-Fingerprints from plasma (Table 3) for all donors as well as calculated MEAN and SEM. The RAS- and RSSE-Fingerprints of 2 out of the 12 healthy donors are shown together with corresponding values for molar SSE-Ratios below (C; Donor 3, Donor 6).

[0114] FIG. 5 shows an overview of the main peptide degradation steps of the bradykinin system, i.e. the main bradykinin peptides and the respective enzymes forming and/or degrading those peptides.

[0115] FIG. 6 shows the tables with the peptide levels measured for the RAS (A) and the bradykinin system (B) in the same plasma samples, stabilised with GTC after incubation for the indicated time periods.

[0116] FIG. 7 shows the respective bar graphs.

EXAMPLES

Materials

[0117] C18 Cartridges: SEP-PAK Vac 3 cc (500 mg), Waters [0118] Mass Spectrometer: Q TRAP4000Applied Biosystems [0119] HPLC System: 1100 Series, Agilent [0120] C18 RP-HPLC column: Luna 3u C18(2) 100A, 1002.00 mm, (Phenomenex, Cat. no. 00D-4251-B0)

Reagents

[0121] Ethanol, abs. (Merck, Cat. no. 100983) [0122] Methanol, (Fluka, Cat. no. 14262) [0123] Water, LiChrosolv (Merck, Cat. no. 115333) [0124] Acetonitril, LiChrosolv (Merck, Cat. no. 114291) [0125] Formic acid, >98%, (Fluka, Cat. no. 06440) [0126] Z-Arg, as Renin inhibitor, (Bachem, C-3195) [0127] Pepstatin A (Bachem (N-1125) [0128] p-Hydroxymercuribenzoic acid, sodium salt (Fluka, 55540) [0129] 1,10-Phenanthroline monohydrate (Sigma, P9375) [0130] Lisinopril (Sigma, L6394) [0131] Captopril (Sigma, C4043) [0132] Amastatin.HCl, (Bachem, N-1410) [0133] ACE, NEP and APN were purchased from R&D Systems. [0134] rhACE2 (recombinant soluble human ACE2) was produced by Apeiron Biologics. [0135] EDTA (Sigma) [0136] GTC (Sigma, Cat. no. G9277) [0137] Trifluoroacetic acid (TFA) (Sigma-Aldrich, Cat. no. 302031)

Internal Standards

[0138] The internal standards used for absolute quantification of peptides in biological samples were synthetic peptides, their sequence was identical to the peptides analytes and was tagged with a mass label allowing the discrimination between endogenous peptides and standard peptides in LC-MS/MS analysis. The identical physicochemical properties of these synthetic peptides make them ideal internal standards for low abundance peptide quantification showing identical behaviour and recovery during sample processing compared to their corresponding peptide analyte. The internal standards were subjected to the sample during or directly after blood collection, taking into consideration all manipulation induced variations. The use of peptide specific internal standards is recommendable, as peptide recoveries may differ between different peptides and individual samples.

[0139] Furthermore, the MS/MS-fragmentation characteristics of endogenous and standard peptides are identical allowing high accuracy and precision in determining absolute peptide levels.

Example I

Analysis of Proteolytic Cascade Degradation Products in Blood Samples According to the Present Invention (RSSE Fingerprint)

RSSE-Fingerprinting

[0140] Blood samples were collected and anti-coagulated with standardised heparin tubes (BD). As indicated in FIGS. 3A-3C, plasma separation has been done for the respective samples before the incubation to reach steady state equilibrium. After incubation of the blood or plasma samples for the time periods as indicated in FIG. 1A, or incubation for 2 h for FIGS. 2A1-2C3, FIGS. 3A-3C and FIG. 4A, in a 37 C. water bath, samples were cooled on ice followed by immediate addition of the steady state equilibrium conserving protease inhibitor cocktail containing Pepstatin A, 1,10-Phenanthroline, EDTA, p-Hydroxymercuribenzoic acid, and Z-Arg, as well as the internal standards.

LC-MS/MS Sample Preparation and Analysis

[0141] Following plasma separation by centrifugation at 3000 rcf for 10 minutes at 4 C., 0.2-2 ml of plasma was applied onto an activated and equilibrated SEP-PAK C18 cartridge. Sample matrix components were removed by washing three times with 1 ml water. Bound analytes were then eluted with 1 ml of methanol. Eluates were evaporated to dryness and reconstituted in 10% acetonitril/90% water supplemented with 0.1% formic acid followed by subjection to LC-MS/MS analysis.

Solid Phase Extraction

[0142] A vacuum manifold has been used for sample processing. [0143] 1. Activation: EtOH abs. [0144] 2. Equilibration: 21 ml H.sub.2O [0145] 3. Loading: 0.2-1 ml stabilised plasma [0146] 4. Washing: 31 ml H.sub.2O [0147] 5. Elution: 1 ml MeOH

Quantification and Signal Integration

[0148] MRM chromatograms were integrated using Analyst 1.5.1 software provided by Applied Biosystems. The threshold for the quantification limit was set at a signal-to-noise ratio of 10. Integration signals not reaching this ratio were set to zero. Analyte signals were related to internal standard signals and concentration was calculated from initially spiked amounts of internal standards.

Results

[0149] The evaluation of the RAS in respect to angiotensin peptide concentrations is critically dependent on the conditions used for sample collection and sample conservation. An analytical system was developed which is able to effectively conserve in vivo as well as ex vivo steady state equilibrium angiotensin peptide levels in blood followed by high sensitivity LC-MS/MS-Analysis and absolute quantification.

[0150] In general, the RAS is a peptide hormone system constantly producing new peptides from the pro-hormone AGT, whereas the rate of production is primarily dependent on renin activity. The peptide levels, which are present in circulation, are dependent on soluble proteases, blood cell bound proteases and also endothelium associated proteases which can be spatially different due to organ specific expression patterns. The inner surface of blood vessels is covered with numerous different angiotensin receptors and therefore takes over a central part in the establishment of angiotensin peptide concentrations in circulation. As a consequence of organ specific expression of angiotensin metabolising proteases like ACE or ACE2, it becomes obvious that blood peptide levels can be spatially different throughout the body. Nevertheless, there are plenty of enzymatic components of the RAS present in blood either in a freely soluble or in a blood cell associated form, which significantly affect circulating peptide levels. Taking together previous considerations, the RAS constitutes a system with a temporary constant throughput of peptide hormone molecules with local differences regarding peptide concentrations in different tissues and organs.

[0151] In the present invention a method is described which takes into account all blood associated factors affecting peptide hormone systems like the RAS by incubating a blood or plasma sample until a steady state equilibrium is reached for one or more peptide levels, followed by quantification of peptides. As shown in FIG. 1A, the RAS-Fingerprint which represents the in vivo circulating angiotensin peptide concentrations in blood samples collected by arm venous puncture and immediate sample stabilisation by addition of a protease inhibitor cocktail, is significantly different from the ex vivo RAS-Fingerprint (or RSSE-Fingerprint) observed when blood is incubated at 37 C. without the addition of protease inhibitors. Interestingly, the angiotensin peptide concentrations achieved under these conditions reach levels, which were found to be constant over a remarkable period of time. This indicated a state of equilibrium reached by the sample, which is characterised by equal rates of formation and degradation for individual peptides, namely the steady state equilibrium. The steady state equilibrium peptide levels were reached within 30 minutes and remained stable for at least 6 h from the start of incubation (FIG. 1A). The stability period ended with a strong increase of Ang 1-10 concentration in the sample indicating a change of enzyme activities within the sample. Finally, after 24 h of incubation, the concentration of Ang 1-10 steeply dropped down. Beside Ang 1-10 and Ang 1-8, there were no significant amounts of other angiotensin metabolites detected in the samples during the time course. The so-called RSSE-Fingerprint (RAS steady state equilibrium Fingerprint) was found to be significantly affected by pharmacologic agents interfering with the RAS (FIG. 1B, FIGS. 2A1-2A2). It was further tested if the addition of RAS affecting agents can shift the steady state equilibrium of the sample to a different but stable steady state equilibrium condition. The ACE inhibitor (Captopril) and the aminopeptidase inhibitor (Amastatin) or a combination of both were added to blood prior to incubation for 2 or 4 hours at 37 C. All treatments reached steady state equilibrium characteristic for the inhibitor(s) as indicated by comparable levels of Ang 1-10 and Ang 1-8 after 2 and 4 hours of incubation (FIG. 1B). The ACE inhibitors Lisinopril or Captopril increased the Ang 1-10 and decreased the Ang 1-8 steady state equilibrium levels when compared to control levels. Renin inhibitors, which block the initial step of angiotensin production, were found to completely shut down the RAS. Amastatin, which is an inhibitor of certain aminopeptidases, was found to massively increase Ang 1-8 levels pointing to the important role of aminopeptidases in the regulation of Ang 1-8 levels in vivo.

[0152] FIG. 1C compares the peptide concentrations reached after 2 h and 4 h incubation at 37 C. in the absence (dark bars; control) and presence of EDTA and AEBSF (light bars) followed by the conservation of peptide concentrations by addition of an inhibitor cocktail at indicated time points. The combination of EDTA and AEBSF is used in state-of-the-art methods for the measurement of plasma renin activity (PRA) (Bystrom et al.; Clin. Chem. 56(2010), 1561-1569). The concentrations of angiotensin 1-10 (upper panel) and angiotensin 1-8 (lower panel) in control samples reach steady state equilibrium as indicated by minor changes between 2 h and 4 h of incubation at 37 C. (compare FIG. 1B). In contrast, in the presence of EDTA and AEBSF, there are significant changes in the levels of either Ang 1-10 and Ang 1-8 between 2 h and 4 h of incubation at 37 C. The strong accumulation of Ang 1-10 in the EDTA/AEBSF treated sample over time clearly shows the absence of a steady state equilibrium in these samples.

[0153] Furthermore, the effects of recombinant RAS enzymes on RSSE-Fingerprints were tested by adding 5 g/ml ACE, ACE2, NEP, or APN to the samples prior to the incubation periods. The RSSE-Fingerprints shifted as expected in these samples (FIGS. 2B1-2B2) and also in samples where combinations of enzymes with different pharmacologic inhibitors were added (FIGS. 2C1-2C3). Of note, the comparison of samples treated with the ACE inhibitor Lisinopril with the combination of ACE2 and Lisinopril revealed, that Ang 1-10 is a substrate for ACE2 at physiologic concentrations in the original sample matrix, efficiently producing Ang 1-9 (FIG. 2A1, FIG. 2C1). Although the steady state levels of Ang 1-10 after addition of ACE2 remain high, there is a remarkable peptide flow in the direction Ang 1-9, which might be an important mechanism of action of ACE inhibitors in clinical use. Furthermore, this ACE2 mediated Ang 1-9 production is impressively shown in the presence of Amastatin, which further increases steady state equilibrium Ang 1-10 levels by inhibiting its N-terminal proteolytic degradation (FIG. 2C3). ACE inhibition was found to be a prerequisite to detect significant steady state equilibrium Ang 1-9 levels which points to a significant higher affinity of Ang 1-10 to ACE than to ACE2. This higher affinity of Ang 1-10 to ACE than to ACE2 could also be confirmed by the observation of lower steady state equilibrium Ang 1-10 concentrations comparing addition of ACE to ACE2 (FIG. 2B1).

[0154] The results obtained from these experiments clearly demonstrated a direct association of the RSSE-Fingerprint with the integrated RAS enzyme activities contained in the sample.

[0155] Based on these findings, the effect of using fresh or frozen plasma instead of blood were explored as there would be easier handling regarding large scale analysis, knowing that blood cell associated RAS components would be lost under these conditions. The RSSE-Fingerprints were compared for blood, plasma and frozen/thawed plasma from the same donor for control samples (FIG. 3A), Amastatin spiked samples (FIG. 3B) and samples spiked with ACE2 and Lisinopril (FIG. 3C). The inhibitors and combinations were selected in order to achieve a clearly visible shift of the steady state equilibrium while using either enzymes or low molecular weight inhibitors to proof the method's suitability for clinical analytic questions. Freezing and thawing of plasma was found to cause minimal variations in the RSSE-Fingerprint whereas using blood instead of plasma resulted in significant differences especially regarding Ang 1-10, Ang 1-8 and Ang 1-7 which point to the presence of blood cell associated NEP (CD10) and ACE (CD143).

[0156] Finally the variability of the RAS-Fingerprint and the RSSE-Fingerprint was investigated among 12 healthy volunteers and analysed in immediately stabilised blood, equilibrated blood and equilibrated plasma from each donor. The mean of the measured angiotensin concentrations is given as a fingerprint graph in FIG. 4A. Donor specific data regarding Ang 1-10 and Ang 1-8, which are the predominant peptide present in healthy volunteers, are given for the RAS-Fingerprints (FIG. 4B-Table 1), the RSSE-Fingerprint in blood (FIG. 4B-Table 2) as well as the RSSE-Fingerprint in plasma (FIG. 4B-Table 3). Beside concentrations of the peptides in pg/ml, the concentrations were calculated in fmol/ml and used to constitute a molar steady state activity ratio for ACE by dividing the Ang 1-8 concentration through the Ang 1-10 concentration. Compared to the RAS-Fingerprints measured, the RSSE-Fingerprints showed greater variances among donors, which reflect potential diversities in the constitution of the soluble RAS components among different donors. Two representative donors are shown in FIG. 4C. Donor 3 had a molar SSE-Ratio for ACE in blood (1-8/1-10) of 4.5 while Donor 6 displayed an ACE-SSE-Ratio of 20.5 pointing to a more prominent role of ACE in the production of Ang 1-8 in this donor. There is also a difference in the RAS-ratio for ACE (0.35 vs. 0.79), however, the difference based on the RSSE-Fingerprint are much more distinctive.

[0157] As a conclusion, a powerful method for the evaluation of the RAS or components thereof in biological samples is provided with the present invention. The combination of the present highly sensitive LC-MS/MS based angiotensin peptide quantification method with the innovative steady state equilibration of the sample prior to stabilisation represents a highly reproducible tool for evaluation of soluble and blood cell associated RAS enzyme activities. The use of this new technology has a great potential for the discovery of biomarkers as the RAS is involved in a variety of pathologic conditions. Furthermore, soluble and blood cell associated RAS enzyme activities represent a major site of pharmacologic activity of several anti-hypertensive drugs. The understanding of the system's individuality might pave the way for patient specific approaches in the treatment of RAS associated diseases. The technology according to the present invention will push this development forward by providing a deep and comprehensive insight into the renin-angiotensin system in biological samples.

Example II

Analysis of Proteolytic Cascade Degradation Products of the Renin-Angiotensin System as Well as the Bradykinin System in Blood Samples According to the Present Invention

[0158] All methods were done as described in Example I, except that the plasma samples were stabilised by the addition of 4M GTC/1% TFA, either immediately or after incubation for 1 or 3 hours in a 37 C. water bath.

Results

[0159] FIGS. 6 and 7 show that the method according to the present invention can be applied not only to the RAS, but also to other proteolytic cascades, such as the bradykinin system. Furthermore, these figures show that the steady state equilibrium can efficiently be stabilised not only by the addition of a protease inhibitor cocktail, but also by a chaotropic agent such as GTC. After an incubation period of 1 h, a steady state equilibrium has been reached for the RAS and the bradykinin system and remained stable, as can be seen from the comparison of peptide levels between 1 h and 3 h of incubation.