CAR-EXPRESSING NK-92 CELLS AS CELL THERAPEUTIC AGENTS
20170283507 ยท 2017-10-05
Inventors
- Winfried Wels (Frankfurt, DE)
- Kurt Schonfeld (Langen, DE)
- Torsten Tonn (Dresden, DE)
- Manuel Grez (Heidelberg, DE)
- Congcong Zhang (Frankfurt, DE)
Cpc classification
C07K16/2863
CHEMISTRY; METALLURGY
C07K2319/33
CHEMISTRY; METALLURGY
C07K2319/30
CHEMISTRY; METALLURGY
C07K2319/70
CHEMISTRY; METALLURGY
C07K2317/73
CHEMISTRY; METALLURGY
A61P43/00
HUMAN NECESSITIES
A61K40/15
HUMAN NECESSITIES
A61K2239/38
HUMAN NECESSITIES
C12N15/86
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
C12N2740/16043
CHEMISTRY; METALLURGY
International classification
C07K14/705
CHEMISTRY; METALLURGY
Abstract
The present invention relates to an ErbB2-specific NK-92 cell or cell line containing a lentiviral vector encoding a chimeric antigen receptor and preferably two vector integration loci in its cellular genome. The present invention further relates to the use of the ErbB2-specific NK-92 cell or cell line in the prevention and/or treatment of cancer, preferably ErbB2-expressing cancers. The present invention further relates to the use of the ErbB2-specific NK-92 cell or cell line as targeted cell therapeutic agent and/or for adoptive cancer immunotherapy. The present invention further relates to a method for generating an ErbB2-specific NK-92 cell or cell line as well as to a method for identifying an ErbB2-specific NK-92 cell or cell line and to the ErbB2-specific NK-92 cell or cell line obtained or identified by the methods as well as their uses.
Claims
1.-15. (canceled)
16. A method of treating cancer in a subject comprising administering to the subject a therapeutically effective amount of ErbB2-specific NK-92 cells, the cells containing a lentiviral vector encoding a chimeric antigen receptor comprising an ErbB2-specific scFv antibody fragment, a hinge region, transmembrane and intracellular domains of CD28, and intracellular domain of CD3 zeta, and wherein said vector is genomically integrated, wherein administration treats the cancer in the subject.
17. The method of claim 16, wherein said vector is genomically integrated (i) in an intergenic region on chromosome 2, and (ii) in the TRAF2 gene on chromosome 9.
18. The method of claim 16, wherein the cell or cell line is characterized in that by PCR analysis of the genomic DNA of said cell or cell line at least one of the following amplification products is obtained: PCR with primers of SEQ ID NOs. 1 and 2 yields an amplification product with the nucleotide sequence of SEQ ID NO. 9; PCR with primers of SEQ ID NOs. 3 and 4 yields an amplification product with the nucleotide sequence of SEQ ID NO. 10; PCR with primers of SEQ ID NOs. 5 and 6 yields an amplification product with the nucleotide sequence of SEQ ID NO. 11; PCR with primers of SEQ ID NOs. 7 and 8 yields an amplification product with the nucleotide sequence of SEQ ID NO. 12.
19. The method of claim 16, wherein the cells show reduced or no natural cytotoxicity to ErbB2-negative cells.
20. The method of claim 16, wherein the cells show increased cytotoxicity to ErbB2-expressing tumor cells compared to unmodified NK-92 cells.
21. The method of claim 16, wherein the ErbB2-specific scFv antibody fragment comprises the amino acid sequence of SEQ ID NO. 13 (scFv FRP5).
22. The method of claim 16, wherein the ErbB2-specific scFv antibody fragment is encoded by the nucleotide sequence of SEQ ID NO. 14.
23. The method of claim 16, wherein the chimeric antigen receptor comprises the amino acid sequence of SEQ ID NO. 15 (full-length CAR).
24. The method of claim 16, wherein the chimeric antigen receptor is encoded by the nucleotide sequence of SEQ ID NO. 16.
25. The method of claim 16, wherein the NK-92 cell is NK-92/5.28.z having accession number DSM ACC3244.
26. The method of claim 16, wherein the cancer is an ErbB2-expressing cancer.
27. The method of claim 16, wherein the cancer is selected from the group consisting of breast cancer, ovarian cancer, gastric cancer, prostate cancer, squamous cell carcinoma, head and neck cancer, colon cancer, pancreatic cancer, uterine cancer, renal cell cancer, glioblastoma, medulloblastoma, sarcoma, and lung cancer.
28. The method of claim 16, wherein the method comprises pre-treatment of the cells by irradiation, preferably -irradiation.
29. The method of claim 16, wherein 110.sup.5 to 110.sup.7 cells are administered to the subject.
30. The method of claim 16, wherein the cells are administered intravenously.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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[0188] M: DNA marker (GeneRuler 100 bp Plus DNA Ladder, Thermo Scientific).
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[0190] For
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[0193] Unmodified NK-92 (upper panel) or ErbB2-specific NK-92/5.28.z cells (lower panel) were labeled with fluorescent DiD labeling reagent and intravenously injected into NSG mice carrying established orthotopic MDA-MB453/EGFP breast carcinoma xenografts. Twenty-four hours after injection, tumors were excised, single cell suspensions were prepared, and analyzed for the presence of EGFP-expressing and DiD-labeled cells. DiD-positive NK cells are indicated in dark grey (lower right quadrants). EGFP-positive breast carcinoma cells (upper left quadrants) and double-negative murine stromal cells (lower left quadrants) are indicated in light grey. Double-positive events (upper right quadrant) represent conjugates of CAR-expressing NK-92/5.28.z and MDA-MB453/EGFP target cells. Representative flow cytometric data from one animal of each group are shown (n=3).
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[0196] Control mice received PBS. Four weeks after tumor challenge, lungs were excised and tumor nodules on the lung surface were counted.
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EXAMPLES
Example 1
1.1 Methods
Cells and Culture Conditions
[0198] Human K562 erythroleukemia cells (ATCC, Manassas, Va.) were maintained in RPMI 1640 medium (Lonza, Kln, Germany). Human MDA-MB453 and MDA-MB468 breast carcinoma cells, and HEK 293T cells (all ATCC) were cultured in DMEM (Lonza). All media were supplemented with 10% heat-inactivated FBS, 2 mM L-glutamine, 100 U/ml penicillin, 100 g/ml streptomycin. Human NK-92 cells (ATCC) were propagated in X-VIVO 10 medium (Lonza) supplemented with 5% heat-inactivated human plasma (German Red Cross Blood Service Baden-WrttembergHessen, Frankfurt, Germany) and 100 IU/ml IL-2 (Proleukin; Novartis Pharma, Nurnberg, Germany). Murine Renca-lacZ/ErbB2 and Renca-lacZ/EGFR renal cell carcinoma cells expressing human ErbB2 or EGFR were cultured in RPMI-1640 medium supplemented with 10% FBS, 2 mM L-glutamine, 100 U/ml penicillin, 100 g/ml streptomycin, 0.25 mg/ml zeocin and 0.48 mg/ml G418 (Maurer-Gebhard et al., 1998).
Generation of CAR-Expressing NK-92/5.28.z Cells
[0199] The CAR sequence 5.28.z was designed by in silico assembly of an immunoglobulin heavy chain signal peptide, ErbB2-specific scFv(FRPS) antibody fragment and a modified CD8hinge region (wherein an unpaired cysteine within the hinge region was replaced by serine), followed by CD28 transmembrane and intracellular domains and CD3 intracellular domain. A codon-optimized fusion gene was synthesized (GeneArt, Regensburg, Germany) and inserted into lentiviral transfer plasmid pHR'SIN-cPPT-WPREmut vector (Schambach et al., 2006), resulting in lentiviral transfer plasmid pS-5.28.z-W. VSV-G pseudotyped vector particles were generated and NK-92 cells were transduced as described previously (Sahm et al., 2012), and for cell clone NK-92/5.28.z confirmed by PCR analysis of genomic DNA with oligonucleotide primers that yielded characteristic PCR products spanning the junctions between chromosomal DNA and integrated vector sequences.
Cytotoxicity Assays
[0200] Cytotoxicity of NK-92 cells towards target cells was analyzed in FACS-based assays as described (Sahm et al., 2012). Briefly, target cells were labeled with calcein violet AM (Molecular Probes, Invitrogen, Karlsruhe, Germany) and co-cultured with effector cells at various effector to target (E/T) ratios for 2 h at 37 C. After co-culture, 250 l of a 1 g/ml propidium iodide (PI) solution were added to each sample 5 min before flow cytometric analysis in a FACSCanto II flow cytometer (BD Biosciences, Heidelberg, Germany). Data were analyzed using FACSDiva software (BD Biosciences). To calculate specific cytotoxicity, the number of spontaneously lysed target cells in the absence of effector cells was subtracted from the number of dead target cells determined as calcein violet AM and PI double positive in the measured sample.
Irradiation of NK-92 Cells
[0201] NK-92/5.28.z and unmodified NK-92 cells were collected by centrifugation, counted, washed, resuspended in fresh growth medium and irradiated with 5 or 10 Gy using a Biobeam 2000 device (Gamma Service Medical, Leipzig, Germany). For in vitro proliferation and cytotoxicity assays, irradiated cells were washed, resuspended in fresh growth medium and cultured for up to 72 h. Proliferation was analyzed by counting viable cells at different time points using trypan blue exclusion. For in vivo experiments, cells were irradiated with 10 Gy and applied directly.
Tumor Homing of NK-92 Cells
[0202] EGFP-expressing MDA-MB453 breast carcinoma cells were derived by transduction of MDA-MB453 cells with an EGFP-encoding lentiviral vector and enrichment by flow cytometric cell sorting. Orthotopic breast carcinoma xenografts were induced in 4 to 6 weeks old female NOD-SCID IL2R .sup.null (NSG) mice (Charles River, Sulzfeld, Germany) by injection of 510.sup.6 MDA-MB453/EGFP cells suspended in Matrigel (BD Biosciences) into the mammary fat pad. When tumors were palpable, NK-92/5.28.z or unmodified NK-92 cells were labeled with DiD (1,1-dioctadecyl-3,3,3,3 tetramethylindodicarbocyanine) labeling reagent (Molecular Probes/Life Technologies, Darmstadt, Germany) as described (Tavri et al., 2009), and injected into the lateral tail vein of the tumor bearing mice (110.sup.7 cells/animal; 3 animals per group). Twenty-four hours after injection, mice were sacrificed, tumors were excised, single cell suspensions were prepared, and analyzed for the presence of EGFP-expressing and DiD-labeled cells in a FACSCanto II flow cytometer.
In Vivo Antitumor Activity
[0203] Four to 6 weeks old female NSG mice were injected with 110.sup.5 Renca-lacZ/ErbB2 cells into the lateral tail vein at day 0. Then animals were treated by i.v. injection of 110.sup.7 NK-92/5.28.z or unmodified NK-92 cells at days 1 and 3 after tumor cell injection (5 mice/group). Control mice received PBS. In separate experiments, NSG mice injected with Renca-lacZ/ErbB2 cells were also treated with irradiated NK-92/5.28.z cells (10 Gy), or non-irradiated NK-92/5.28.z and unmodified NK-92 cells as controls (5 mice/group). Four weeks after tumor challenge, all animals were sacrificed, lungs were excised, and tumor nodules on the lung surface were counted as described (Maurer-Gebhard et al., 1998).
Statistical Analysis
[0204] Differences between values were evaluated using the two-tailed unpaired Student's t test. P values <0.05 were considered significant. Statistical calculations were performed using Prism 5 software (GraphPad Software, La Jolla, Calif.).
1.2 Results
Generation of an ErbB2-Specific NK-92/5.28.z Single Cell Clone
[0205] The chimeric antigen receptor 5.28.z was used to generate a clinically applicable ErbB2-specific NK-92 cell line (
[0206] Endogenous, CAR-independent cytotoxicity of NK-92/5.28.z cells was investigated using ErbB2-negative but NK-sensitive K562 human erythroleukemia cells as targets. While K562 cells were highly sensitive to CAR-negative unmodified NK-92 cells, they were killed to a much lower extent by ErbB2-specific NK-92/5.28.z cells (
[0207] Taken together, these data demonstrate that NK-92/5.28.z cells are highly selective and efficiently kill ErbB2-expressing tumor cells, while their endogenous cytotoxicity to ErbB2-negative targets is markedly reduced when compared to unmodified NK-92 cells.
Molecular Characterization of ErbB2-Specific NK-92/5.28.z Cells
[0208] Linear amplification-mediated PCR (LAM-PCR) and DNA sequencing revealed one vector integration each in an intergenic region on chromosome 2, and in the TRAF2 gene on chromosome 9 of clonal NK-92/5.28.z cells (
a) Amplification product TRAF2-CAR (5)
CAR vector integration in TRAF2 gene
5 part of vector integration
PCR product TRAF2-CAR (5) from genomic DNA of NK-92/5-28.z cells
Primers:
[0209]
TABLE-US-00014 TRAF2-F1: [SEQIDNO.1] CTTCAGCAGGGACCAGAAACAA CAR-R1: [SEQIDNO.2] CCGCTTAATACTGACGCTCTCG
lower case letters: TRAF2 gene
upper case letters: vector sequence
Length: 587 nucleotides
TABLE-US-00015 SEQIDNO.9 cttcagcagggaccagaaacaaaactcacactctttcttctctgagttga 50 gactggaaaaatgaaagattgttttaggggaaacttgagggaacagtctg 100 ggcagcctgcagggcatggccctgttcctccagggctgggaaagtcagca 150 ctgctttctggtggcgaACTGGAAGGGCTAATTCACTCCCAACGAAGACA 200 AGATCTGCTTTTTGCTTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAG 250 CCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAA 300 AGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTC 350 TGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTA 400 GCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGGGAAACCAGAGGAGC 450 TCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAG 500 GGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAA 550 GGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGG 587
b) Amplification product CAR-TRAF2 (3)
CAR vector integration in TRAF2 gene
3 part of vector integration
PCR product CAR-TRAF2 (3) from genomic DNA of NK-92/5-28.z cells
Primers:
[0210]
TABLE-US-00016 CAR-F1: [SEQIDNO.3] ATCGCCACGGCAGAACTCA TRAF2-R1: [SEQIDNO.4] GACCCTTCACCCAACGCTTAG
lower case letters: TRAF2 gene
upper case letters: vector sequence
Length: 503 nucleotides
TABLE-US-00017 SEQIDNO.10 ATCGCCACGGCAGAACTCATCGCCGCCTGCCTTGCCCGCTGCTGGACAGG 50 GGCTAGGTTGCTGGGCACTGATAATTCCGTGGTGTTGTCGAATTCGATAC 100 TCGAGGTCGAGGCAATTCGAGCTCGGTACCTTTAAGACCAATGACTTACA 150 AGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAA 200 GGGCTAATTCACTCCCAACGAAGACAAGATCTGCTTTTTGCTTGTACTGG 250 GTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAG 300 GGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTA 350 GTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACC 400 CTTTTAGTCAGTGTGGAAAATCTCTAGCAccttccctctgcagctgctgg 450 ctcagccgattgtatatgctgggagctctgcactaagcgttgggtgaagg 500 gtc 503
c) Amplification product IGCHR2-CAR (5)
CAR vector integration in intergenic region of chromosome 2
5 part of vector integration
PCR product IGCHR2-CAR (5) from genomic DNA of NK-92/5-28.z cells
Primers:
[0211]
TABLE-US-00018 IGCHR2-F1: [SEQIDNO.5] TCAGTGGAATGGGCAGCTTCAAGT CAR-R2: [SEQIDNO.6] TTCAGCAAGCCGAGTCCTGCGT
lower case letters: intergenic region chromosome 2
upper case letters: vector sequence
Length: 679 nucleotides
TABLE-US-00019 SEQIDNO.11 tcagtggaatgggcagcttcaagttgatgtcatttcaatagtaacttatt 50 tcagtctacatacttcccaagaatgcaccatctcttttttatgtatttat 100 tattttgagaaagagtctcactctgtcgcccaggctggagtgcaatggca 150 tgatcttggctcactgtaacctccgtctcctgggttcaagccattctcct 200 gtctcagcctcccgggtagtggggttataggcacacaccaccacgcccgg 250 ctaatttttgtatttttagtaaagatggggtttcaccatgttggccaggc 300 tgggctcaaactcttgacttcaggtgatccgcccaccttggcctcccaaa 350 gtgctgggatgacaggcACTGGAAGGGCTAATTCACTCCCAACGAAGACA 400 AGATCTGCTTTTTGCTTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAG 450 CCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAA 500 AGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTC 550 TGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTA 600 GCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGGGAAACCAGAGGAGC 650 TCTCTCGACGCAGGACTCGGCTTGCTGAA 679
d) Amplification product CAR-IGCHR2 (3)
CAR vector integration in intergenic region of chromosome 2
3 part of vector integration
PCR product CAR-IGCHR2 (3) from genomic DNA of NK-92/5-28.z cells
Primers:
[0212]
TABLE-US-00020 CAR-F2: [SEQIDNO.7] ACTGATAATTCCGTGGTGTTGT IGCHR2_CAR-R1: [SEQIDNO.8] CACTGTGGCTCACTGCTAGA
lower case letters: intergenic region chromosome 2
upper case letters: vector sequence
Length: 376 nucleotides
TABLE-US-00021 SEQIDNO.12 ACTGATAATTCCGTGGTGTTGTCGAATTCGATACTCGAGGTCGAGGCAAT 50 TCGAGCTCGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCT 100 TAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCC 150 AACGAAGACAAGATCTGCTTTTTGCTTGTACTGGGTCTCTCTGGTTAGAC 200 CAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAA 250 GCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGT 300 TGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGG 350 AAAATCTCTAGCAgtgagccacagtg 376
Target Cell Killing by Irradiated NK-92/5.28.z Cells
[0213] In phase I clinical trials with unmodified NK-92, irradiation of cells with 10 Gy prior to infusion had been included as a safety measure to prevent permanent engraftment (Arai et al., 2008; Tonn et al., 2013). Similar safety measures may be important for clinical use of retargeted NK-92 cells. Hence, we tested the effects of -irradiation on growth and cytotoxic activity of clonal NK-92/5.28.z cells. Irradiation with 5 Gy was sufficient to prevent further replication, while the number of viable NK-92/5.28.z cells remained almost constant for 24 hours after exposure to 5 or 10 Gy before declining gradually (
Homing of NK-92/5.28.z Cells to ErbB2-Positive Breast Carcinomas
[0214] The potential of NK-92/5.28.z cells to home to established tumors was investigated in an orthotopic breast carcinoma model. MDA-MB453 cells transduced with an EGFP-encoding lentiviral vector were implanted into the mammary fat pad of female NSG mice, and allowed to grow until tumors were palpable. Then NK-92/5.28.z and unmodified unmodified NK-92 cells were labeled with fluorescent DiD labeling reagent, and intravenously injected into the tumor-bearing animals. Twenty-four hours later, tumors were excised, single cell suspensions were prepared, and analyzed for the presence of EGFP-expressing tumor cells and DiD-labeled NK cells. In mice injected with unmodified NK-92, only a few of the NK cells were found in the tumors (
In Vivo Antitumor Activity of NK-92/5.28.z Cells
[0215] For evaluation of in vivo antitumor activity we chose an experimental lung metastasis model. NSG mice received intravenous injections of Renca-lacZ/ErbB2 cells, followed by i.v. injections of unmodified NK-92 or retargeted NK-92/5.28.z cells at days 1 and 3 after tumor cell inoculation. Control mice received PBS. Four weeks after tumor challenge, lungs were excised and tumor nodules on the lung surface were counted. While treatment with unmodified NK-92 cells did not affect metastasis formation in comparison to PBS-treated controls, retargeted NK-92/5.28.z cells reduced the number of pulmonary tumor nodules in this experiment by approximately 50% (mean number of lung surface metastases: PBS: 37.75.4; NK-92: 365.1; NK-92/5.28.z: 192.6; p<0.05) (
REFERENCES
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