IN VIVO PRODUCTION OF A RECOMBINANT CAROTENOID-PROTEIN COMPLEX
20170211119 · 2017-07-27
Assignee
- Phycosource (Cergy, FR)
- Commissariat A L'energie Atomique Et Aux Energies Alternatives (Paris, FR)
- Centre National De La Recherche Scientifique (Paris, FR)
Inventors
- Céline Bourcier de Carbon (Neuilly-sur-siene, FR)
- Diana Kirilovsky (Paris, FR)
- Clémence Boulay (Mariel-sur-Mauldre, FR)
- Bertrand-Elie Duran (Pantin, FR)
- Alexandre Phulpin (Montmorency, FR)
- Adjélé Wilson (Aulnay Sous Bois, FR)
Cpc classification
C12N9/0012
CHEMISTRY; METALLURGY
C12P23/00
CHEMISTRY; METALLURGY
International classification
C12P23/00
CHEMISTRY; METALLURGY
Abstract
The present invention relates to a method for producing a carotenoid-protein complex in vivo comprising the steps of transforming of prokaryote cell with genes involved in carotenoid synthesis and with a gene encoding an apo-carotenoprotein; culturing said prokaryote cells such as to induce sequential genes expression, isolating and purifying the carotenoid-protein complex.
Claims
1. A method for producing a carotenoid-protein complex in vivo comprising the steps of: a) transforming of prokaryote cells with genes involved in carotenoid synthesis and a gene encoding an apo-carotenoprotein; b) culturing of transformed prokaryote cells in step a) in conditions allowing sequential gene expression, wherein the expression of the genes involved in carotenoid synthesis is induced prior to the expression of the gene encoding an apo-carotenoprotein c) isolating and purifying the carotenoid-protein complex expressed by the prokaryote cells.
2. The method according to claim 1 wherein the prokaryote cell in step a) is transformed with at least one plasmid containing the genes involved in carotenoid synthesis and with one plasmid containing a gene encoding an apo-carotenoprotein, wherein said plasmids contain different replication origins and different selective pressure.
3. The method according to claim 1 wherein the at least one plasmid containing the genes involved in carotenoid synthesis in step a) is a plasmid containing the genes involved in -carotene synthesis
4. The method according claim 1 wherein the transforming of step a) further comprises a second plasmid containing the genes encoding a -carotene ketolase and/or the genes encoding a -carotene hydrolase.
5. The method according claim 1, where in the plasmid containing the genes involved in -carotene synthesis further contains the genes encoding a -carotene ketolase and/or the genes encoding -carotene hydrolase under the control of an inducible promoter, preferably ara promoter.
6. The method of claim 1, wherein in step a) the prokaryotic cell is transformed with one plasmid containing the genes involved in -carotene synthesis, the genes encoding a -carotene ketolase and/or the genes encoding -carotene hydrolase and the gene encoding an apo-carotenoprotein.
7. The method according to claim 1, wherein step b) of culturing the prokaryote cells comprises the following steps: b1) expressing the genes encoding -carotene without specific induction; b2) inducing the gene expression of -carotene ketolase and/or -carotene hydrolase at temperature ranges of 33 to 40 C., preferably of 35 to 38 and more preferably about 37 C.; b3) inducing the gene expression of apo-carotenoprotein at temperature ranges of 20 to 30 C., preferably of 22 to 28 C. and more preferably of 24 to 26 C.
8. The method of claim 1 wherein the apo-carotenoprotein gene is modified by introducing or deleting 9 to 45 nucleotides preferably 24 to 30 nucleotides after the first ATG of 5 end or before the stop codon of said gene.
9. The method according to claim 8, wherein the modifications after the first ATG of 5 end are selected from the group of sequences comprising: SEQ ID NOs: 8, 9, 10, 11, 12, 14, 15, 16, 17 and the modification before the stop codon corresponds to SEQ ID NO: 18.
10. The method according to claim 8, wherein the modifications after the first ATG of 5 end are selected in the group of sequences comprising: SEQ ID NOs: 11, 13, and the modification before the stop codon correspond to SEQ ID NO: 18.
11. The method according to claim 1, wherein the carotenoid genes are obtained from any bacteria, any algae or any plant containing carotenoids, preferably from cyanobacteria and non photosynthetic eubacteria and the said apo-carotenoprotein gene is isolated from any organism, preferably from cyanobacteria.
12. The method according to claim 1, wherein the prokaryote cells are selected in the group of non-photosynthetic prokaryotic cells preferably comprising E. coli or Lactococcus lactis.
13. A carotenoid-protein complex obtained by the method according to claim 1.
14. The carotenoid-protein complex according to claim 13 which is a protein selected in the group of soluble proteins, preferably comprising an orange carotenoid protein (OCP), a red carotenoid protein (RCP), AstaP, crustacyanin, glutathione s-transferase like protein (GSTP1).
15. A modified gene as used in the method according to claim 1 encoding apo-OCP or apo-RCP characterized in that it is modified by introducing 9 to 45 nucleotides, preferably 24 to 30 nucleotides after the first ATG of 5 end and/or before the stop codon of said gene.
16. A modified gene encoding apo-OCP according to claim 15 wherein the modifications after the first ATG of 5 end are selected from the group of sequences comprising: SEQ ID NOs: 8, 9, 10, 11, 12, 14, 15, 16, 17 and the modification before the stop codon corresponds to SEQ ID NO: 18.
17. A modified gene encoding apo-RCP according to claim 15, wherein the modifications after the first ATG of 5 end are selected in the group of sequences comprising: SEQ ID NOs: 11, 13, and the modification just the stop codon corresponds to SEQ ID NO: 18.
18. A vector, a plasmid or a host cell comprising a modified apo-carotenoprotein gene according to claim 15.
19. The modified OCP or RCP encoded by the modified apo-protein gene according to claim 15.
Description
[0116] The present invention will be illustrated by following figures and examples.
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EXAMPLES
Example 1: Construction of an E. coli Strain Carrying Three Plasmids, One Containing the Genes Involved in -Carotene Synthesis, the Second Containing the Genes Encoding a -Carotene-Ketolase and/or a -Carotene-Hydrolase and the Third Containing a Gene Encoding an Apo-Carotenoprotein
[0127] I. Materials and Methods
[0128] 1) Amplification of Crt Genes Encoding Enzymes Involved in Carotenoid Synthesis and of Carotenoid Binding Proteins (Ocp and Rcp)
[0129] Carotenoid Binding Proteins (Apo-Carotenoproteins) [0130] The ocp gene encoding the OCP from three different cyanobacteria strains (slr1963 in Synechocystis PCC 6803 (SEQ ID NO:1); NIES39_N00720 in Arthrospira platensis (SEQ ID NO:2) and all3149 in Anabaena PCC 7120 (SEQ ID NO:3)) and rcp gene (all1123) from Anabaena PCC 7120 (SEQ ID NO:4) were amplified by PCR. [0131] Cyanobacteria genomes and plasmids containing the different ocp genes or the rcp genes with addition of a sequence (CACCACCACCACCACCAC, called HisTagCter) encoding six histidines in the 3end followed by stop codon were used as templates. [0132] For example such sequences are SEQ ID NO: 1HisTagCter; SEQ ID NO:2HisTagCter; SEQ ID NO:3HisTagCter and SEQ ID NO: 4HisTagCter.
[0133] Crt Enzymes [0134] The crtO gene (slr0088) from Synechocystis PCC 6803 SEQ ID NO:5) and the crtW gene (alr3189) from Anabaena PCC 7120 (SEQ ID NO: 6), both encoding for -carotene ketolases and the crtR gene (sll1468) of Synechocystis PCC 6803 (SEQ ID NO: 7) encoding for the -carotene hydrolase were amplified by PCR using cyanobacteria genomes as template and synthetic oligonucleotides as primers (SEQ ID NOs: 19/20 and 21/22 for crtO gene, SEQ ID NOs: 25/26 for crtR gene and SEQ ID NO: 27/28 for crtW gene). [0135] The iProof High Fidelity DNA Polymerase (from Bio Rad) was used to PCR amplification of the desired genes. The primers used herein.
[0136] 2) Construction of Plasmids: Cloning of Different Ocp, Rcp and Crt Genes
[0137] Plasmid Containing the Genes Encoding the Enzymes Needed to -Carotene Synthesis [0138] Two different plasmids were used: [0139] 1) The construction of the Plasmid pAC-BETA, which contains the crtB, crtE, crtl and crtY genes from Erwina herbicola (SEQ ID NO: 75) under the control of the promoter of crtE (gift of Prof Francis X. Cunningham) is described in (Cunningham et al., 1996). [0140] 2) The plasmid pACCAR16crtX containing the crtB, crtE, crtl and crtY genes from Erwina uredovora (SEQ ID NO: 70) under the control of the promoter of crtE, (gift of Prof Sandmann) is described in (Misawa et al., 1995). These plasmids allow the synthesis of -carotene in the cell.
[0141] Plasmids Containing the -Carotene Ketolases and -Carotene Hydrolases [0142] The crtO, crtW and crtR genes were cloned in a modified plasmid pBAD/gIII A (from Invitrogen) which contains an arabinose inducible promoter (araBAD) and Ampicillin resistance. The expression of the Crt genes is thus enhanced by arabinose induction in the medium of culture. [0143] CrtO and CrtW catalyse the conversion of -carotene to echinenone and canthaxanthin respectively and CrtR catalyzes the conversion of -carotene to zeaxanthin. The plasmid pBAD/gIII A was first modified to avoid the export of the recombinant protein into the periplasmic space of the cells. To this purpose the region encoding the gene III signal sequence was deleted. The primers used for the PCR mutagenesis were pBAD/gIIIAmut (F and R) corresponding to SEQ ID NO: 23 and SEQ ID NO: 24. [0144] The plasmid pBAD/gIII A modified have been named pBAD. The Plasmid pBAD was digested with BglII and EcoRI restriction enzymes to clone the crtO gene of Synechocystis or with NcoI and EcoRI restriction enzymes to clone the crtW gene of Anabaena PCC7120 and with NcoI and XhoI restriction enzyme to clone the crtR gene of Synechocystis. Primers CrtO (SEQ ID NOs: 19, 20, 21, 22), primers CrtR (SEQ ID NO: 25 and SEQ ID NO: 26) and primers CrtW (SEQ ID NO: 27 and SEQ ID NO: 28) were used to amplify crtO, crtR and crtW genes respectively. The resulting plasmids were named pBAD-CrtO, pBAD-CrtR and pBAD-CrtW. Theses primers and plasmids are shown on table 2 below.
TABLE-US-00002 TABLE 2 Plasmids and primers used for mutagenesis and cloning of genes encoding -carotene ketolases and hydrolases Plasmids/Restriction enzyme Primer's name Primers SEQ ID NO: pBADgIII-CrtO CrtO F 19 BgIII/EcoRI CrtO R 20 pBAD-CrtO 21 22 pBAD pBAD/gIIIAmut F 23 pBAD/gIIIAmut F 24 pBAD-CrtR NcoI/XhoI CrtR F 25 CrtR R 26 pBAD-CrtW CrtW F 27 NcoI/EcoRI CrtW R 28
Plasmids Containing the Genes of Carotenoid Binding Proteins
[0145] The ocp and rcp genes were cloned in a Plasmid pCDFDuet-1 (from Novagen). The plasmid pCDFDuet-1 contains T7lac promoters and Streptomycin/Spectinomycin resistance. The expression of the ocp and rcp genes is thus enhanced by IPTG induction in the medium of culture. [0146] The pCDFduet-1 plasmid was digested with EcoRI and NotI to clone the different ocp genes (from Synechosystis PCC6803, Arthrospira Platensis PCC7345 and Anabaena PCC 7120). The primers OCPsynHistagNter15 (F and R) corresponding to SEQ ID NO: 29 and SEQ ID NO: 30 respectively were used to amplify the Synechocystis ocp gene (1104 nucleotides) using genomic DNA of Synechocystis PCC6803 as template. The primers OCPanaHisTagNter15 (F and R) corresponding to SEQ ID NO: 33 and SEQ ID NO: 34 respectively were used to amplify the Anabaena ocp gene (1076 nucleotides) using genomic DNA of Anabaena PCC 7120 as template. The primers OCParthroHistagNter15 (F and R) corresponding to SEQ ID NO: 31 and SEQ ID NO: 32 respectively were used to amplify the Arthrospira ocp gene (1355 nucleotides) using the plasmid p0F7345 as template (plasmid constructed by (Jallet et al., 2014)). The resulting PCR products were introduced into pCDFDuet-1 to create the pCDF-OCPsynHistagNter15, pCDF-OCPanaHistagNter15, pCDF-OCParthroHistagNter15 and plasmids. In the OCP isolated from E. coli cells carrying these plasmids, an extension of 15 amino acids will be present in the N-terminal of the OCP protein. This extension contains a His-tag of 6 His. (NpCDFduet extension corresponding to SEQ ID NO: 8).
TABLE-US-00003 TABLE 3 Plasmids and primers used for cloning of genes encoding ocp genes Primers Plasmids/Restriction SEQ ID enzymes Primer's name NO: pCDF-OCPsynHisTagNter15 OCPsynHistagNter15 F 29 EcoRI/NotI OCPsynHistagNter15R 30 pCDF-OCParthroHisTagNter15 OCParthroHistagNter15 F 31 EcoRI/NotI OCParthroHistagNter15 R 32 pCDF-OCPanaHisTagNter15 OCPanaHistagNter15 F 33 EcoRI/NotI OCPanaHistagNter15 R 34 pCDFDuet-NC2-1123HIS RCPanaCter F 35 NcoI/NotI RCPanaCter R 36 [0147] To obtain a C-terminal His-tagged Synechocystis OCP, first, the GCC sequence coding for Ala73 was mutated to GCG that also code for in alanine to abolish the NcoI site in the Synechocystis ocp gene sequence in the plasmid SK-OCPsyn-P2A-CterHisTagFRP (Wilson et al., 2008), to clone the OCPsyn-HisTagCter between NcoI and NotI sites. [0148] Then, pCDFDuet-1 was digested with NcoI and NotI to excise the N-terminal extension containing the His-tag initially present in this plasmid. The ocp genes containing a C-terminal His-Tag from Synechosystis PCC6803, Arthrospira Platensis PCC7345 and Anabaena PCC 7120 were cloned in the plasmid. The primers OCPsynCter (F and R) corresponding to SEQ ID NO: 39 and SEQ ID NO: 40 respectively were used to amplify the ocp gene tagged in C-terminal domain from the plasmid pSK-OCPsyn-P2A-CterHisTagFRP-A73A (Wilson et al., 2008). The primers OCParthroCter (F and R) corresponding to SEQ ID NO: 57 and SEQ ID NO: 58 respectively were used to amplify the ocp gene from the plasmid p0F7345His (Jallet et al, 2014) which contains the ocp gene tagged in the C-terminal domain. The primers OCPanaCter (F and R) corresponding to SEQ ID NO: 61 and SEQ ID NO: 62 respectively were used to amplify the ocp gene from genomic DNA of Anabaena PCC 7120, the C-terminal His-tag was then added by PCR mutagenesis. The resulting PCR products were introduced into pCDFDuet-1 to create the pCDF-OCPsynCter, pCDF-OCParthroCter and pCDF-OCPanaCter plasmids. The OCP isolated from E. coli cells containing these plasmids, will contain a His-tag in their C-terminal (HisTagCter corresponding to SEQ ID NO: 18). [0149] To obtain a C-terminal His-tagged RCP, the plasmid pCDFDuet-1 was digested with NcoI and NotI to excise the N-terminal extension containing the His-tag initially present in this plasmid. Then the rcp gene from Anabaena PCC 7120 containing a C-terminal His-Tag was cloned in the plasmid. The primers RCPanaCter (F and R) corresponding to SEQ ID NO: 35 and SEQ ID NO: 36 respectively were used to amplify the rcp gene tagged in the C-terminal from the plasmid pPSBA2-1123HIS (constructed by Rocio Lopez Igual in the lab). The resulting PCR products were introduced into pCDFDuet-1 to create the pCDFDuet-NC2-1123HIS plasmid. The RCP isolated from E. coli cells containing this plasmid, will contain a His-tag in its C-terminal (SEQ ID NO: 18). [0150] Table 4 shows the plasmids used in the present invention, their characteristics and their source.
TABLE-US-00004 TABLE 4 All plasmids used in the present invention Source and Plasmid Characteristics reference pCDFDuet-1 Commercially supplied overexpression Novagen plasmid vector using T7 promoter capable to carry two genes by two multi-cloning site, (SmR) pCDF-OCPsynHisTagNter15 pCDFDuet-1 derivative, His-tag N-terminal Performed in OCP Synechocystis PCC6803 gene the present invention pPSBA2-OCP/FRPsynC- Plasmid constructed by Adjl Wilson, Wilson et al, terHisTAG which contains the OCP and FRP genes 2008 tagged in C-terminal from Synechosystis PCC6803 pCDF-OCPsynCter pCDFDuet-1 derivative, His-tag C-terminal Performed in OCP Synechocystis PCC6803 gene the present invention pOF7345 Plasmid constructed by Denis Jallet, which Jallet et al, contains the OCP and FRP genes of 2014 Arthrospira Platensis PCC7345 pCDF-OCParthroHisTagNter15 pCDFDuet-1 derivative, His-tag N-terminal Performed in OCP Arthrospira Platensis PCC7345 gene the present invention pOF7345His Plasmid constructed by Denis Jallet, which Jallet et al, contains the OCP and FRP genes tagged in 2014 C-terminal, of Arthrospira Platensis PCC7345 pCDF-OCParthroCter pCDFDuet-1 derivative, His-tag C-terminal Performed in OCP Arthrospira Platensis PCC7345 gene the present invention pCDF-OCPanaHisTagNter15 pCDFDuet-1 derivative, His-tag N-terminal Performed in OCP Anabaena PCC 7120 gene the present invention pCDF-OCPanaCter pCDFDuet-1 derivative, His-tag C-terminal Performed in OCP Anabaena PCC 7120 gene the present invention pCDFDuet-NC2-1123HIS pCDFDuet-1 derivative, His-tag C-terminal Performed in RCP Anabaena PCC 7120 gene the present invention pBAD/gIII A Commercially supplied overexpression Invitrogen plasmid vector using araBAD promoter, (AmpR) pBAD pBAD/gIII A derivative, geneIII signal Performed in sequence the present invention pBAD-CrtO pBAD derivative, CrtO Synechocystis Performed in PCC6803 gene the present invention pBAD-CrtR pBAD derivative, CrtR Synechocystis Performed in PCC6803 gene the present invention pBAD-CrtW pBAD derivative, CrtW Anabaena PCC7120 Performed in gene the present invention pAC-BETA P15A ori, Cm(CmR), pACYC184 Cunningham derivative, E. herbicola crt genes et at. (1996) pACCAR16crtX P15A ori, Cm(CmR), pACYC184 Misawa et al, derivative, E. uredovora crt genes 1995
[0151] Modifications of the Sequences of Ocp and Rcp Genes
[0152] To increase the yield of carotenoid-OCP complexes in E. coli cells, modifications were introduced in the sequence of the ocp gene. Several modifications were tested in the Synechocystis ocp gene and then the best ones were introduced in the Arthrospira and Anabaena ocp genes. Modifications were also introduced in the Anabaena rcp gene. The sequences added after the first ATG of the gene correspond to SEQ ID NOs: 9, 10, 11, 12, 14, 15 and 16 (respectively called NC15, NC11, NC9, NC7, NC4, Mix15 and C9). They were introduced by directed mutagenesis, using the pCDF-OCPSynCter plasmid as template and primers corresponding to SEQ ID NOs: (41 and 42), (45 and 46), (47 and 48), (49 and 50), (51 and 52), (43 and 44), (53 and 54) respectively The modification HisTagNter3aa was introduced by directed mutagenesis using the pCDF-OCPSynHisTagNter15 plasmid as template and primers corresponding to SEQ ID NOs: 55 and 56 causing the deletion of a part of the N-terminal prolongation. The modification HisTagNter3aa was also introduced to the ocp genes of Arthrospira and Anabaena using the pCDF-OCParthroHisTagNter15 and pCDF-OCPanaHisTagNter15 plasmids as templates and the primers corresponding to SEQ ID NOs: 59 and 60 and SEQ ID NOs: 63 and 64 respectively.
[0153] The modifications corresponding to SEQ ID NOs: 11 and 13 (called NC9 and NC6 respectively) were introduced to the rcp gene using the pCDFDuet-NC2-1123HIS plasmid as template and the primers corresponding to SEQ ID NOs: 65 and 66 and SEQ ID NOs: 67 and 68 respectively.
[0154] Table 5 shows the modified plasmids comprising a modified ocp genes.
TABLE-US-00005 TABLE 5 Modified plasmids comprising modified ocp genes performed and used in this invention Source and Plasmid modified Characteristics reference pCDF-OCPsynCterNterNC15 Mutagenesis using pCDF-OCPsynCter Performed in the invention pCDF-OCPsynCterNterNC11 Mutagenesis using pCDF-OCPsynCter Performed in the invention pCDF-OCPsynCterNterNC9 Mutagenesis using pCDF-OCPsynCter Performed in the invention pCDF-OCPsynCterNterNC7 Mutagenesis using pCDF-OCPsynCter Performed in the invention pCDF-OCPsynCterNterNC4 Mutagenesis using pCDF-OCPsynCter Performed in the invention pCDF- Mutagenesis using pCDF-OCPsynCter Performed in OCPsynCterNterMIX15 the invention pCDF-OCPsynCterNterC9 Mutagenesis using pCDF-OCPsynCter Performed in the invention pCDF-OCPsynNter3aa Mutagenesis using pCDF-OCPsynHisTagNter15 Performed in the invention pCDF-OCParthroNter3aa Mutagenesis using pCDF- Performed in OCParthroHisTagNter15 the invention pCDF-OCPanaNter3aa Mutagenesis using pCDF-OCPanaHisTagNter15 Performed in the invention pCDF-NC9-1123HIS Mutagenesis using pCDFDuet-NC2-1123HIS Performed in the invention pCDF-NC6-1123HIS Mutagenesis using pCDFDuet-NC2-1123HIS Performed in the invention
[0155] 3) The E. coli Strains Producing OCP and RCP
[0156] Two different bacterial strains were used for gene cloning and gene expression:
[0157] 1) E. coli XL10-Gold from Agilent (TetrD(mcrA)183 D(mcrCB-hsdSMR-mrr)173 endA1 supE44 thi-1 recA1 gyrA96 relA1 lac Hte [F proAB laclqZDM15 Tn10 (Tetr) Amy Camr]) was used for gene cloning and grown in LB medium at 37 C., and
[0158] 2) E. coli BL21-Gold (DE3) from Agilent (F-ompT hsdS(rB-mB) dcm+ Tetr gal A(DE3) endA Hte) was used for OCP production.
[0159] E. coli strains producing OCP or RCP constructed in this invention are all derivatives of E coli BL21-Gold (DE3).
[0160] BL21 cells were transformed with the pAC-BETA, pBAD-CrtO (or pBAD-CrtW or pBAD-CrtR) and pCDF-OCP or pCDF-RCP plasmids. The latter plasmids contain WT or modified sequences of ocp or rcp genes (table 5).
TABLE-US-00006 TABLE 6 Strains of E. coli producing different carotenoids created in this invention and plasmids used to create these strains used in the invention. Strains Plasmid contents BL21-pcarotene pAC-BETA (Francis X. Cunningham) BL21-pcarotene pACCAR16CrtX (Sandmann) BL21echi pAC-BETA pBAD-CrtO BL21echiBIS pAC-BETA pCDF-CrtO BL21zea pAC-BETA pBAD-CrtR BL21cantha pAC-BETA pBAD-CrtW
TABLE-US-00007 TABLEAU 7 E coli strains containing_ocp and rcp genes (obtained from different microorganisms cloned in pCDF-Duet plasmids) and containing crtO or crtW or CrtR genes cloned in pBAD plasmids. PLASMID CONTENT E coli containing SYNECHOCYSTIS OCP BL21echi-OCPsynHisTagNter15 pAC-BETA pBAD-CrtO pCDF-OCPsynHisTagNter15 BL21echi-OCPsynCter pAC-BETA pBAD-CrtO pCDF-OCPsynCter BL21echi-OCPsynNter3aa pAC-BETA pBAD-CrtO pCDF-OCPsynNter3aa BL21echi-OCPsynCterNter15 pAC-BETA pBAD-CrtO pCDF-OCPsynCterNter15 BL21echi-OCPsynCterNter11 pAC-BETA pBAD-CrtO pCDF-OCPsynCterNter11 BL21echi-OCPsynCterNter9 pAC-BETA pBAD-CrtO pCDF-OCPsynCterNter9 BL21echi-OCPsynCterNter7 pAC-BETA pBAD-CrtO pCDF-OCPsynCterNter7 BL21echi-OCPsynCterNter4 pAC-BETA pBAD-CrtO pCDF-OCPsynCterNter4 BL21echi-OCPsynCterC9 pAC-BETA pBAD-CrtO pCDF-OCPsynCterNterC9 BL21echi-OCPsynCterMIX15 pAC-BETA pBAD-CrtO pCDF-OCPsynCterNterMIX15 BL21zea-OCPsynHisTagNter15 pAC-BETA pBAD-CrtR pCDF-OCPsynHisTagNter15 BL21zea-OCPsynCter pAC-BETA pBAD-CrtR pCDF-OCPsynCter BL21cantha-OCPsynCter pAC-BETA pBAD-CrtW pCDF-OCPsynCter BL21cantha-OCPsynNter3aa pAC-BETA pBAD-CrtW pCDF-OCPsynNter3aa E coli containing ANABAEANA OCP BL21echi-OCPanaHisTagNter15 pAC-BETA pBAD-CrtO pCDF-OCPanaHisTagNter15 BL21echi-OCPanaCter pAC-BETA pBAD-CrtO pCDF-OCPanaCter BL21echi-OCPanaNter3aa pAC-BETA pBAD-CrtO pCDF-OCPanaNter3aa BL21cantha-OCPanaCter pAC-BETA pBAD-CrtW pCDF-OCPanaCter BL21cantha-OCPanaNter3aa pAC-BETA pBAD-CrtW pCDF-OCPanaNter3aa E coli containing ARTHROSPIRA OCP BL21echi-OCParthroHisTagNter15 pAC-BETA pBAD-CrtO pCDF-OCParthroHisTagNter15 BL21echi-OCParthroCter pAC-BETA pBAD-CrtO pCDF-OCParthroCter BL21echi-OCParthroNter3aa pAC-BETA pBAD-CrtO pCDF-OCParthroNter3aa BL21cantha-OCParthroCter pAC-BETA pBAD-CrtW pCDF-OCParthroCter BL21cantha-OCParthroNter3aa pAC-BETA pBAD-CrtW pCDF-OCParthroNter3aa E coli containing ANABAEANA RCP BL21cantha-RCPanaCter pAC-BETA pBAD-CrtW pCDFDuet-NC2-1123HIS BL21cantha-RCPanaCterNterNC6 pAC-BETA pBAD-CrtW pCDF-NC6-1123HIS BL21cantha-RCPanaCterNterNC6 pAC-BETA pBAD-CrtW pCDF-NC9-1123HIS
[0161] 4) Production of Recombinant OCP
[0162] Synechocystis echinenone (ECN)-OCP was obtained by following steps: [0163] 1) 1 ml of stock glycerol (600 l E coli cells+400 l glycerol) is diluted in 200 ml TB (containing 50 g/ml chloramphenicol, 50 g/ml ampicillin, 50 g/ml streptomycin) [0164] 2) Incubation at 37 C. for 3-4 hours until arrive to OD600=0.8. [0165] 3) When the culture is at OD600=0.8, 0.02% Arabinose is added to induce the transcription of the CrtO gene. The culture in the presence of arabinose is incubated overnight at 37 C. [0166] 4) In the next morning; 800 ml of fresh TB are added to the 200 ml E. coli culture. [0167] 5) The cells are incubated at 37 C. in the presence of 0.02% Arabinose until OD600=1-1.5. [0168] 6) Addition of IPTG to a final concentration of 0.2 mM IPTG to the culture at OD higher than 1. [0169] 7) Incubation overnight in the presence of 0.02% arabinose and 0.2 mM IPTG at 28 C. (For rcp this incubation must be done at 18-20 C.) [0170] 8) In the next morning the frozen pellet of cells is resuspended in the lyse buffer containing 40 mM Tris pH 8, 10% glycerol and 300 mM NaCl. After resupension, 1 mM [EDTA, PMSF/DMSO, caproc acid, benzamidine acid] and Dnase were added in the lyses buffer and the cells were broken in dim light using a French Press (twice at 750 psi). The broken cells were centrifuged at 20000 rpm for 30 min at 4 C. and the obtained supernatant was then kept for OCP purification on nickel column. The supernatant was loaded on a column of nickel Probond resin (Invitrogen). After column washing (15 and 60 mM Imidazol) the purified OCP was eluted with 200 mM Imidazol.
Example 2: Construction of an E. coli Strain Carrying Two Plasmids, One Containing the Genes Involved in -Carotene Synthesis and the Gene Encoding a -Carotene-Ketolase and the Second, Containing the Genes Encoding an Apo-Carotenoprotein
[0171] Materials and Methods
[0172] 1) Amplification of Crt Genes Encoding Enzymes Involved in Carotenoid Synthesis [0173] The crt operon containing crtB, crtE, crtl and crtY genes from Erwinia uredovora under the control of the promoter of crtE (SEQ ID NO: 70) was amplified by PCR using the pACCAR16CrtX plasmid as template and synthetic oligonucleotides Crt-pBAD (F and R) as primers (SEQ ID NO: 71 and SEQ ID NO: 72). [0174] 2) Construction of Plasmid: Cloning of the Crt Operon in pBAD-CrtO Plasmid [0175] The crt operon containing crtB, crtE, crtl and crtY genes, included the crtE promoter and the endogenous terminator of the operon (SEQ ID NO: 70), was amplified. CrtE promoter enhances the synthesis of -carotene constitutively in E. coli cells.
[0176] The construction of the plasmid pBAD-CrtO is described in example 1. In this plasmid the crtO gene is under the control of the araBAD promoter. The expression of the crtO gene is thus enhanced by arabinose induction. [0177] The pBAD-CrtO plasmid was digested with PmeI and XbaI to clone the crt operon (from Erwinia uredovora). The primers Crt-pBAD (F and R) corresponding to SEQ ID NO: 71 and SEQ ID NO: 72 respectively were used to amplify the crt operon (6008 nucleotides) using pACCAR16CrtX plasmid (see example 1) as template. The resulting PCR product was introduced into pBAD-CrtO to create the pBAD-CrtO-Crt plasmid.
[0178] 3) The E. coli Strains Producing OCP Using Only Two Plasmids [0179] E. coli strains producing OCP or RCP constructed in this invention are all derivatives of E. coli BL21-Gold (DE3).
[0180] BL21 cells were transformed with the pBAD-CrtO-Crt plasmid and the pCDF-OCPsynNter3aa plasmid (table 5). The construction of the pCDF-OCPsynNter3aa plasmid is described in example 1.
[0181] 4) Production of Recombinant OCP
[0182] The production of Synechocystis echinenone (ECN)-OCP was obtained by following the steps described in example 1.
Example 3: Construction of an E. coli Strain Carrying Only One Plasmid Containing the Genes Involved in -Carotene Synthesis, the Genes Encoding -Carotene-Ketolase and the Genes Encoding Apo-Carotenoprotein
[0183] Methods and Materials
[0184] 1) Construction of Plasmid: Cloning of the Ocp Gene in pBAD-CrtO-Crt Plasmid
[0185] The ocp gene from Synechocystis PCC 6803 under the T7lac promoter control, was cloned into the pBAD-CrtO-Crt plasmid. T7lac promoter thus enhances the expression of the ocp genes by IPTG induction in the medium of E. coli culture.
[0186] The construction of the pBAD-CrtO-Crt plasmid is described in example 2. This plasmid contains the crt operon (containing crtB, crtE, crtl and crtY genes) under the control of the crtE promoter and the crtO gene under the control of the araBAD promoter.
[0187] The pBAD-CrtO-Crt plasmid was digested with PciI to clone the T7lac-ocp Synechocystis gene sequence (from Synechocystis PCC 6803). The primers T7lacOCP-pBADfull (F and R) corresponding to SEQ ID NO:73 and SEQ ID NO:74 respectively were used to amplify the T7lacOCP gene sequence (1600 nucleotides for T7lacOCPsynNter3aa) using pCDF-OCPsynNter3aa plasmid as template (Table 5).
[0188] The resulting PCR product was introduced into pBAD-CrtO-Crt to create the pBAD-CrtO-Crt-OCPsynNter3aa plasmid.
[0189] 2) The E. coli Strains Producing OCP Using Only One Plasmids [0190] E. coli strains producing OCP or RCP constructed in this invention are all derivatives of E coli BL21-Gold (DE3). [0191] BL21 cells were transformed with the pBAD-CrtO-Crt-OCPsynNter3aa plasmid.
[0192] 3) Production of Recombinant OCP [0193] Synechocystis echinenone (ECN)-OCP was obtained by following the steps described in example 1.
The plasmids used in examples 2 and 3 are given in table 8 below:
TABLE-US-00008 TABLE 8 Plasmids according to the examples 2 and 3 Plasmids Characteristics pBAD-CrtO-Crt allowing echinenone synthesis pBAD-CrtO-Crt-OCPsynNter3aa allowing Synechocystis OCP production with echinenone synthesis
[0194] Alternatively, in examples 2 and 3 the plasmid (pBAD-CrtW-Crt allowing cantaxanthin synthesis, the plasmid pBAD-CrtW-Crt-OCPsynNter3aa (allowing Synechocystis OCP production with canthaxanthin synthesis), the plasmid pBAD-CrtW-Crt-OCPanaNter3aa (allowing Anabaena OCP production with canthaxanthin synthesis)) and the plasmid pBAD-CrtW-Crt-OCParthroNter3aa (allowing arthrospira OCP production with canthaxanthin synthesis) may also be used.
[0195] Methods of Characterisation of OCP
[0196] Absorbance Measurements
[0197] Absorbance spectra and the kinetics of orange to red OCP photoconversion and dark red to orange OCP reconversion were measured in a Specord 5600 (Analyticjena) spectrophotometer. The kinetics were monitored during illumination of the OCP with 5000 mol photons m.sup.2 s.sup.1 of white light and after turn-off the light at 18 C.
[0198] Quantification of Protein and Carotenoid
[0199] The concentration of proteins was measured by the Bradford method and the concentration of carotenoid was deduced from the absorbance spectrum using the absorption coefficient of echinenone A1.sup.%=2158. The concentrations of protein and carotenoid are calculated in M and the ratio will give the % of apo-OCP attached to the carotenoid molecule.
[0200] Gel Electrophoresis
[0201] The different steps of the OCP and RCP purification were followed by gel electrophoresis using SDS-PAGE on 12% polyacrylamide in a Tris/MES system (Kashino et al., 2001).
[0202] Measurement of Carotenoid Content in E. coli Cells and OCP
[0203] To determine the carotenoid content of the cells, an aliquot of E. coli cells was harvested by centrifugation at 14000 rpm for 1 min and washed once with water. The cell pellets were resuspended in 500 l of acetone and incubated at room temperature for 15 min in the dark. The tubes were centrifuged at 14000 rpm for 15 min, and the supernatant containing carotenoids was transferred to a new tube.
[0204] To determine the carotenoid content of OCP, OCP was concentrated with centrifugal filter units (Millipore). The carotenoid was extracted by acetone. After drying carotenoid extracted was resupended in 100% di-ether/100 l ethanol. Carotenoid content was analysed by thin layer chromatography (TLC) with 90% petroleum ether/10% ethanol as mobile phase.
[0205] The carotenoid content of OCPs and RCPs was also analysed by High-Performance Liquid Chromatography (HPLC) and Mass spectrometry as described in (Punginelli et al., 2009).
[0206] Fluorescence Measurements
[0207] Fluorescence quenching and recovery were monitored with a pulse amplitude modulated fluorometer (101/102/103-PAM; Walz, Effelrich, Germany). All measurements were carried out in a stirred cuvette of 1 cm diameter. Typically, the fluorescence quenching was induced by 870 mol photons m.sup.2 s.sup.1 of blue-green light (400-550 nm). All the reconstitution experiments were carried out at 23 C. The phycobilisomes are first illuminated and then redOCP (previously illuminated by strong white light) is added and the decreased of fluorescence is monitored.
[0208] .sup.1O.sub.2 Detection by EPR Spin Trapping.
[0209] The formation of a nitroxide radical, which is a paramagnetic species arising from the interaction of TEMPD with .sup.1O.sub.2, was measured by EPR in the absence or presence of different amount of purified proteins in buffer Tris-HCl 100 mM pH 8.0, TEMPD-HCl 100 mM and methylene blue (10 M). The samples were illuminated for 3 min with strong white light (1000 mol quanta m.sup.2 s.sup.1).
Results
[0210] 1) Characteristics of Isolated OCPs
[0211] OCP Isolation
[0212] The OCPs were isolated using affinity Nickel-chromatography. The isolation was followed by gel electrophoresis.
[0213] The isolated Synechocystis OCPs containing different modifications in the N-terminal and/or C-terminal of the protein are shown on
[0214] Yield of OCP-Carotenoid Complexes
[0215] The yield of OCP-carotenoid complex obtained by the method of the present invention is shown on table 9.
TABLE-US-00009 TABLE 9 Examples of yield of OCP obtained from E. coli cells when the overexpression of the ocp gene was done at 28 C. Average quantity of total OCP(holo + apo-OCP) OCP produced in E. coli OCP-carotenoid (%) (mg/L) OCP Synechocystis PCC 6803 OCPsynNter15-echi 30-50 18-22 OCPsynCter-echi 20-40 4-6 OCPsynNter + 3aa-echi >95 30-35 OCPsynNter + 3aa-cantha 75-85 8-12 OCPsynCterNterMIX15-echi 30-40 20-22 OCPsynCterNterNC15-echi 45-55 18-21 OCPsynCterNterNC11-echi >95 9-11 OCPsynCterNterNC9-echi >95 15-17 OCPsynCterNterNC7-echi 75-85 19-21 OCPsynCterNterNC4-echi 70-80 8-10 OCPsynCterNterC9-echi 75-85 20-22 OCP Arthrospira PCC 7345 OCParthroNter15-echi 30-40 18-22 OCParthroCter-echi 10-25 14-16 OCParthroCter- 50-60 30-35 cantha OCParthroNter + 3aa- 30-40 24-26 echi OCParthroNter + 3aa- 60-65 28-30 cantha OCP Anabaena PCC 7120 OCPanaNter15-echi 10-30 4-6 OCPanaCter-echi OCPanaCter-cantha 50-60 60-70 OCPanaNter + 3aa-echi 50-60 50-60 OCPanaNter + 3aa- 40-50 60-70 cantha ECN-OCPsynNter3aa >95 60-70 (two plasmids according to the example 2) ECN-OCPsynNter3aa >95 120-130 (one plasmid according to the example 3)
[0216] Production of OCP from modified E. coli strains with apo-OCP gene originated from several cyanobacteria has been compared. The results are shown on table 9. All the Synechocystis OCP contained an C-terminal His-tag with the exemption of the OCPsynNter+3aa-echi OCP and OCPsynNter15-echi OCP. The Synechocystis OCPs non-containing N-terminal prolongations attached very badly the carotenoid protein: only 20-35% of the isolated OCP contained a carotenoid molecule.
[0217] In addition, the yield of apo-OCP production was lower in the absence of the N-terminal prolongation. When the N-terminal prolongation contains 15 aa, the stability of the carotenoid binding depends on the sequence of these amino acids: The % of ECN-OCP varied from 30 to 55%. N-terminal extensions of 8 to 10 aa just after the first methionine gave the better % of ECN-OCP and the better yield. The amino acid composition of the extension had little effect.
[0218] In conclusion, modification of the apo-OCP is necessary to obtain high quantities of carotenoid-protein complexes with antioxidant activity. The protein without carotenoid has not this activity.
[0219] The same effect was observed with Arthrospira OCP and with the Anabaena OCP. For which only 10% of the protein binds the echinenone in the absence of the N-terminal prolongation. Large quantities of Arthrospira and Anabaena OCPs binding a carotenoid were obtained in the presence of canthaxanthin. For this the E coli cells were transformed with a pBAD-CrtW plasmid.
[0220] Moreover, these results show that the method of the invention using only two plasmids allows obtaining 60 mg of total OCP with plus of 95% holo-OCP from 1 L of E. coli culture. The ECN-OCPsynNter3aa obtained presented the same characteristics than those of the same OCP obtained with three plasmids.
[0221] These results also show that the use of only one plasmid in the method of the invention allows obtaining 120 mg of total OCP with plus of 95% holo-OCP from 1 L of E. coli culture. The ECN-OCPsynNter3aa obtained presented the same characteristics than those of the same OCP obtained with three plasmids.
[0222] Absorbance Spectra and Photoconversion
[0223]
[0224] In addition, all the OCPs isolated from E coli cells carrying echinenone or canthaxanthine are photoactive like the OCP isolated from Synechocystis. In darkness, they are orange and upper illumination they become red (
[0225]
[0226] The spectra of the red OCPs containing canthaxanthin were red shifted compared to those containing echinenone (
[0227] The photoconversion of orange OCP to red OCP was evaluated by measuring the changes of absorbance at 550 nm (1=100% red form; 0=100% orange form). The increase in absorbance follows the accumulation of the red form.
[0228] The kinetics of photoconversion are shown in
[0229] Induction of Phycobilisome Fluorescence Quenching
[0230] In cyanobacteria cells, the main activity of the OCP is the induction of excess energy dissipation as heat. The activated red OCP binds the phycobilisomes and thermally dissipates the energy absorbed by them. This is accompanied by a concomitant decrease of fluorescence. The capacity of OCPs to bind to phycobilisomes and to dissipate excess energy can be measured in vitro using a reconstitution system developed by inventor's laboratory (Gwizdala et al., 2011) using isolated Synechocystis phycobilisomes and isolated OCPs.
[0231] The phycobilisomes were illuminated 30 sec with high intensities of blue-green light and then photoactivated red OCPs were added and the decrease of fluorescence was followed in a PAM fluorometer during 300 sec. Examples of induction of fluorescence quenching by different red OCPs are shown on
[0232]
[0233] Arthrospira OCPs carrying echinenone or canthaxanthin are able to induce a very fast fluorescence quenching (
[0234] Quenching of Singlet Oxygen
[0235] The singlet oxygen (.sup.1O.sub.2) quenching activity of OCPs was measured in vitro as described in Sedoud et al, 2014. Electron paramagnetic resonance (EPR) spin trapping was applied for .sup.1O.sub.2 detection using TEMPD-HCl (2,2,6,6-tetramethyl-4-piperidone). When this nitrone reacts with .sup.1O.sub.2, it is converted into the stable nitroxide radical, which is paramagnetic and detectable by EPR spectroscopy. The production of .sup.1O.sub.2 was induced by illumination of the photosensitizer methylene blue.
[0236] 2) Characteristics of Isolated RCPs
[0237] Yield of RCP-Carotenoid Complexes
[0238] In Anabaena PCC 7120 there exist 4 genes coding only rcp genes with a high similarity to the N-terminal domain of the OCP (Sedoud et al., 2014). One of them, all1123, with different modifications in the 5 end of the gene, was firstly overexpressed in E coli cells in the presence of echinenone or canthaxanthin.
[0239] Using the invention described in this document and following the procedure described in example 1 (3 plasmids) four other RCPs were produced in E. coli cells. The all3221, all4783 and all4941 genes from Anabaena PCC7120 (the three other genes of Anabaena) and the tll1269 gene from the cyanobacterium Thermosynechoccocus elongatus encoding for different RCPs were amplified using Anabaena and T elongatus genomic DNA. The amplified genes were cloned in a modified pCDFDuet plasmid to obtain the pcDF-NC2-3221HIS, pcDF-NC2-4783HIS, pcDF-NC2-4941HIS, pcDF-NC2-1269HIS plasmids. BL21 E. coli cells were transformed with each of these plasmids simultaneously with the pAC-BETA and pBAD-CrtW plasmids. The holo-RCPs proteins binding canthaxanthin (A113221-CANTA, A114783-CANTA, A114941-CANTA and T111269) obtained with the procedure described in Example 1 presented the same absorbance spectra than that of the All1123 RCP shown in
[0240] The rcp gene was overexpressed in E coli cells at 28 C. with a sequence coding 6 histidines in the 3end with or without modifications in the 5 end. When the gene was induced in E coli cells producing echinenone, less than 5% of the isolated RCP was attached to a carotenoid molecule. Addition of amino acids in its N-terminal did not increase the attachment of the carotenoid. Induction of the rcp gene at lower temperatures did not improve the yield. When the rcp gene was induced in the presence of cantaxanthin, the yield of holo-RCP largely increased arriving to 15-20%. In this case, the induction of the rcp gene at lower temperatures (for example, 20 C.) increased even more the yield of holo-RCP (30-40%).
TABLE-US-00010 TABLE 10 shows: % of carotenoid-RCPs obtained from E coli cells at 28 and 20 C. RCP (All1123) produites RCP- chez E. coli carotenoid (%) NC2-all1123-ECN 28 C. 1-3% NC9-all1123-ECN 28 C. 1-3% C6-all1123-ECN 28 C. 1-3% C6-all1123-canta 28 C. 15-20% C6-all1123-canta 20 C. 30-40% NC2-all1123-canta 20 C. 30-40%
[0241] The absorbance spectra of the RCP proteins isolated from Synechocystis presented peaks at 498 and 530 nm and a shoulder at 470 nm because they bind mixoxanthophylls while that isolated from Anabaena binding canthaxanthin presented a large pic with a maximum at 530 nm similar to that shown in
[0242] The His-tagged protein of 20 kDa was isolated from E coli cells using a Nickel column as previously described for the isolation of the OCP. The isolated proteins were red. The spectra of the RCPs are described in
COMPARATIVE EXAMPLES
[0243] As mentioned above, in order to obtain better attachment of carotenoid to apo-protein in a prokaryote cell and to increase the carotenoid-protein complex yield, a sequential gene expression is essential.
[0244] The following examples demonstrate that when the order of gene expression is altered or the synthesis of carotenoids is not maintained when the ocp gene is induced, the carotenoid does not attach the apo-protein and the yield of carotenoid-protein complex decreases.
Comparative Example 1: Production of Recombinant OCP: (without Arabinose the Second Day)
[0245] In this protocol E. coli cells containing the three plasmids described in example 1 were used. The modification of gene encoding OCP corresponds to OCPsynNter3aa-echi which is one of the gene modifications allowing to obtain the best yield of holo-OCP. The only difference between example 1 and comparative example 1 is the steps of gene induction.
[0246] To obtain Synechocystis echinenone (ECN)-OCP the following steps were realized: [0247] 1) 1 ml of stock glycerol (600 l E coli cells+400 l glycerol) is diluted in 200 ml TB (containing 50 g/ml chloramphenicol, 50 g/ml ampicillin, 50 g/ml streptomycin) [0248] 2) Incubation at 37 C. for 3-4 hours until arrive to OD600=0.8. [0249] 3) When the culture is at OD600=0.8, 0.02% Arabinose is added to induce the transcription of the crtO gene. The culture in the presence of arabinose is incubated overnight at 37 C. [0250] 4) In the next morning; 800 ml of fresh TB are added to the 200 ml E. coli culture. [0251] ) The cells are incubated at 37 C. until OD600=1-1.5. [0252] 6) Addition of IPTG to a final concentration of 0.2 mM IPTG to the culture at OD higher than 1. [0253] 7) Incubation overnight in the presence of 0.2 mM IPTG at 28 C. (For rcp this incubation must be done at 18-20 C.) [0254] 8) In the next morning the frozen pellet of cells is resuspended in the lyse buffer containing 40 mM Tris pH 8, 10% glycerol and 300 mM NaCl. After resupension, 1 mM [EDTA, PMSF/DMSO, caproc acid, benzamidine acid] and Dnase were added in the lyses buffer and the cells were broken in dim light using a French Press (twice at 750 psi). The broken cells were centrifuged at 20000 rpm for 30 min at 4 C. and the obtained supernatant was then kept for OCP purification on nickel column. The supernatant was loaded on a column of nickel Probond resin (Invitrogen). After column washing (15 and 60 mM Imidazol) the purified OCP was eluted with 200 mM Imidazol.
[0255] This protocol gives 15 mg of total OCP and less of 2% holo-OCP (table 11 below). The E. coli cells have a pale colour since the carotenoid is not attached to apo-protein. This colour is completely different to the orange colour of cells containing 100% holo-OCP.
Comparative Example 2: Production of Recombinant OCP (Simultaneous Induction of Crto and Ocp Genes; Simultaneous Addition of IPTG and Arabinose)
[0256] In this protocol E coli cells containing the three plasmids described in example 1 were used. The modification of gene encoding OCP corresponds to OCPsynNter3aa-echi which is one of the gene modifications allowing to obtain the best yield of holo-OCP. The only difference between example 1 and comparative example 1 is the steps of gene induction.
[0257] To obtain Synechocystis echinenone (ECN)-OCP the following steps were realized: [0258] 1) 1 ml of stock glycerol (600 l E coli cells+400 l glycerol) is diluted in 200 ml TB (containing 50 g/ml chloramphenicol, 50 g/ml ampicillin, 50 g/ml streptomycin) [0259] 2) Incubation overnight at 37 C. [0260] 3) In the next morning; 800 ml of fresh TB are added to the 200 ml E. coli culture. [0261] 4) The cells are incubated at 37 C. until OD600=1-1.5. [0262] 5) Addition of IPTG to a final concentration of 0.2 mM IPTG and of Arabinose to a final concentration of 0.02% Arabinose to the culture at OD higher than 1. [0263] 6) Incubation overnight in the presence of 0.02% arabinose and 0.2 mM IPTG at 28 C. (For rcp this incubation must be done at 18-20 C.) [0264] 7) In the next morning the frozen pellet of cells is resuspended in the lyse buffer containing 40 mM Tris pH 8, 10% glycerol and 300 mM NaCl. After resupension, 1 mM [EDTA, PMSF/DMSO, caproc acid, benzamidine acid] and Dnase were added in the lyses buffer and the cells were broken in dim light using a French Press (twice at 750 psi). The broken cells were centrifuged at 20000 rpm for 30 min at 4 C. and the obtained supernatant was then kept for OCP purification on nickel column. The supernatant was loaded on a column of nickel Probond resin (Invitrogen). After column washing (15 and 60 mM Imidazol) the purified OCP was eluted with 200 mM Imidazol.
[0265] This protocol gives 18-20 mg of total OCP and less of 2% holo-OCP (table 11 below).
[0266] The E. coli cells have a pale colour since the carotenoid is not attached to apo-protein. This colour is completely different to the orange colour of cells containing 100% holo-OCP.
TABLE-US-00011 TABLE 11 Yield of carotenoid-protein complex obtained by the method of comparative examples 1 and 2 compared to the yield of OCP obtained by the method of the invention. Average quantity of total OCP(holo + apo-OCP) OCP produced in E. coli OCP-carotenoid (%) (mg/L) OCPsynNter + 3aa-echi <2 15 (comparative exemple 1) OCPsynNter + 3aa-echi <2 18-20 (comparative exemple 2) OCPsynNter + 3aa-echi >95 30-35 (exemple 1)
[0267] These results clearly demonstrate that the way of gene induction is essential for obtaining the attachment of the carotenoid to apo-protein and increasing the yield of halo-protein. [0268] Armstrong G (1997) Genetics of Eubacterial Carotenoid Biosynthesis: A Colorful Tale Annu Rev Microbiol 1997, 51: 629-659 [0269] Bhosale P, Bernstein P S (2005) Synergistic effects of zeaxanthin and its binding protein in the prevention of lipid membrane oxidation. Biochim Biophys Acta 1740: 116-121 [0270] Bourcier de Carbon C, Thurotte A, Wilson A, Perreau F, Kirilovsky D (2015) Biosynthesis of soluble carotenoid holoproteins in E coli cells. Nature Scientific Reports 5, 9085 (doi: 10.1038/srep09085) [0271] Cunningham F X, Jr., Pogson B, Sun Z, McDonald K A, DellaPenna D, Gantt E (1996) Functional analysis of the beta and epsilon lycopene cyclase enzymes of Arabidopsis reveals a mechanism for control of cyclic carotenoid formation. Plant Cell 8: 1613-1626 [0272] Giuffra E, Cugini D, Croce R, Bassi R (1996) Reconstitution and pigment-binding properties of recombinant CP29. Eur J Biochem 238: 112-120 [0273] Gwizdala M, Wilson A, Kirilovsky D (2011) In vitro reconstitution of the cyanobacterial photoprotective mechanism mediated by the Orange Carotenoid Protein in Synechocystis PCC 6803. Plant Cell 23: 2631-2643 [0274] Jallet D, Thurotte A, Leverenz R L, Perreau F, Kerfeld C A, Kirilovsky D (2014) Specificity of the cyanobacterial orange carotenoid protein: influences of orange carotenoid protein and phycobilisome structures. Plant Physiol 164: 790-804 [0275] Kashino Y, Koike H, Satoh K (2001) An improved sodium dodecyl sulfate-polyacrylamide gel electrophoresis system for the analysis of membrane protein complexes. Electrophoresis 22: 1004-1007 [0276] Kawasaki S, Mizuguchi K, Sato M, Kono T, Shimizu H (2013) A novel astaxanthin-binding photooxidative stress-inducible aqueous carotenoprotein from a eukaryotic microalga isolated from asphalt in midsummer. Plant Cell Physiol 54: 1027-1040 [0277] Kerfeld C A, Sawaya M R, Brahmandam V, Cascio D, Ho K K, Trevithick-Sutton C C, Krogmann D W, Yeates T O (2003) The crystal structure of a cyanobacterial water-soluble carotenoid binding protein. Structure 11: 55-65 [0278] Kirilovsky D, Kerfeld C A (2012) The orange carotenoid protein in photoprotection of photosystem II in cyanobacteria. Biochim Biophys Acta 1817: 158-166 [0279] Misawa, Nakagawa M, Kobayashi K, Yamano S, Izawa Y, Nakamura K and Harashima K, (1990) Elucidation of the Erwinia uredovora carotenoid biosynthetic pathway by functional analysis of gene products expressed in E coli. J Bacteriol, 172, 6704-6712 [0280] Misawa N, Satomi Y, Kondo K, Yokoyama A, Kajiwara S, Saito T, Ohtani T, Miki W (1995) Structure and Functional-Analysis of a Marine Bacterial Carotenoid Biosynthesis Gene-Cluster and Astaxanthin Biosynthetic-Pathway Proposed at the Gene Level. Journal of Bacteriology 177: 6575-6584 [0281] Punginelli C, Wilson A, Routaboul J M, Kirilovsky D (2009) Influence of zeaxanthin and echinenone binding on the activity of the Orange Carotenoid Protein. Biochim Biophys Acta 1787: 280-288 [0282] Sedoud A, Lopez-Igual R, Ur Rehman A, Wilson A, Perreau F, Boulay C, Vass I, Krieger-Liszkay A, Kirilovsky D (2014) The Cyanobacterial Photoactive Orange Carotenoid Protein Is an Excellent Singlet Oxygen Quencher. Plant Cell 26: 1781-1791 [0283] Wilson A, Ajlani G, Verbavatz J M, Vass I, Kerfeld C A, Kirilovsky D (2006) A soluble carotenoid protein involved in phycobilisome-related energy dissipation in cyanobacteria. Plant Cell 18: 992-1007 [0284] Wilson A, Punginelli C, Gall A, Bonetti C, Alexandre M, Routaboul J M, Kerfeld C A, van Grondelle R, Robert B, Kennis J T, Kirilovsky D (2008) A photoactive carotenoid protein acting as light intensity sensor. Proc. Natl. Acad. Sci. U.S.A 105: 12075-12080 [0285] Yasuhiro N, Eiji Y, Wataru (2007), Quenching Activities of Common Hydrophilic and Lipophilic Antioxidants against Singlet Oxygen Using Chemiluminescence Detection System. Carotenoid Science, Vol. 11, 2007, 16-20
[0286] Zagalsky P F, Mummery R S, Eliopoulos E E, Findlay J B C (1990) The Quaternary Structure of the Lobster Carapace Carotenoprotein, CrustacyaninStudies Using Cross-Linking Agents. Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology 97: 837-848.