NOVEL CARBON FIXATION CYCLE AND USE THEREOF

Abstract

The present invention relates to a novel carbon dioxide fixation cycle synthesizing a carbohydrate product from carbon dioxide in vitro. In addition, the present invention relates to a unit or a composition carrying out carbon dioxide fixation in cyclic manner. Additionally, the present invention relates to a method to fix carbon dioxide or a method to produce glyoxylate from the carbon dioxide fixation cycle. The present carbon dioxide fixation cycle is not found in natural world, and we found that, when the novel carbon dioxide fixation cycle is used, only three ATP molecules are consumed to fix one carbon dioxide molecule, and thus novel carbon dioxide fixation cycle has an energy conversion efficiency approximately 2.5 times higher than that of the Calvin cycle.

Claims

1-40. (canceled)

41. A novel carbon dioxide (CO.sub.2) fixation cycle consisting of succinyl coenzyme A (succinyl-CoA) synthetase, 2-oxoglutarate synthase, isocitrate dehydrogenase, and isocitrate lyase, from which a carbohydrate product is formed from CO.sub.2.

42. The carbon dioxide fixation cycle of claim 41, wherein succinyl-CoA synthetase converts succinate into succinyl-CoA, 2-oxoglutarate synthase converts succinyl-CoA into 2-oxoglutarate, isocitrate dehydrogenase converts 2-oxoglutarate into isocitrate, and the isocitrate lyase converts isocitrate into succinate and glyoxylate.

43. The carbon dioxide fixation cycle of claim 42, wherein the concentrations of succinate or succinyl-CoA are maintained at higher level than that of 2-oxoglutarate or isocitrate.

44. The carbon dioxide fixation cycle of claim 42, wherein the concentrations of succinate and succinyl-CoA are maintained at ratio of 2:1 to 100:1.

45. The carbon dioxide fixation cycle of claim 42, wherein the concentrations of succinyl-CoA and 2-oxoglutarate are maintained at ratio of 100:1 to 10,000:1.

46. The carbon dioxide fixation cycle of claim 42, wherein the concentrations of 2-oxoglutarate and isocitrate are maintained at ratio of 2:1 to 100:1.

47. The carbon dioxide fixation cycle of claim 42, wherein the concentrations of isocitrate and glyoxylate are maintained at ratio of 1:10 to 1:1,000.

48. The carbon dioxide fixation cycle of claim 41, wherein 2-oxoglutarate synthase is isolated from one or more strains selected from the group consisting of green sulfur bacteria, and chemolithotroph.

49. The carbon dioxide fixation cycle of claim 41, wherein isocitrate dehydrogenase is isolated from one or more strains selected from the group consisting of green sulfur bacteria, green non-sulfur bacteria, purple sulfur bacteria, purple non-sulfur bacteria, cyanobacteria, and chemolithotroph.

50. The carbon dioxide fixation cycle of claim 42, wherein the fixation of carbon dioxide is carried out by carboxylation activity of one or more enzymes selected from the group consisting of 2-oxoglutarate synthase, and isocitrate dehydrogenase.

51. The carbon dioxide fixation cycle of claim 50, wherein the carboxylation activity of 2-oxoglutarate synthase is promoted by the reduced ferredoxin.

52. The carbon dioxide fixation cycle of claim 50, further comprising ferredoxin reductase that reduces ferredoxin to promote the carboxylation activity of 2-oxoglutarate synthase.

53. The carbon dioxide fixation cycle of claim 52, wherein the ferredoxin reductase is selected from the group consisting of ferredoxin:nicotinamide adenine dinucleotide phosphate reductase (ferredoxin:NADP.sup.+ reductase), ferredoxin:nicotinamide adenine dinucleotide reductase (ferredoxin:NAD.sup.+ reductase), and ferredoxin:pyruvate reductase.

54. The carbon dioxide fixation cycle of claim 50, further comprising one or more electron donors selected from the group consisting of reduced nicotinamide adenine dinucleotide phosphate (NADPH), reduced nicotinamide adenine dinucleotide (NADH), and pyruvate to promote the carboxylation activity of 2-oxoglutarate synthase.

55. A method for fixing carbon dioxide, comprising: supplying one or more carbon dioxide donors selected from the group consisting of carbonate ions (CO.sub.3.sup.2) and carbon dioxide (CO.sub.2) to the carbon fixation cycle of claim 41, which consists of succinyl-CoA synthetase, a 2-oxoglutarate synthase, isocitrate dehydrogenase, and isocitrate lyase.

56. The method of claim 55, wherein a carbohydrate product from carbon dioxide fixation is glyoxylate.

57. The method of claim 55, wherein one adenosine triphosphate (ATP) molecule is used as biochemical energy to fix one carbon dioxide molecule in the fixation method.

58. The method of claim 55, wherein two reduced nicotinamide adenine dinucleotide phosphate (NADPH) molecules are used as biochemical energy to fix two carbon dioxide molecules in the fixation method.

59. The method of claim 55, further comprising: adding one or more carbohydrates selected from succinate, succinyl-CoA, 2-oxoglutarate, and isocitrate as a starting material of the carbon dioxide fixation cycle.

60. The method of claim 59, wherein the carbohydrate serving as a starting material of the carbon dioxide fixation cycle is continuously regenerated and re-used without being consumed.

Description

DESCRIPTION OF DRAWINGS

[0073] FIG. 1 is a diagram schematically showing a novel carbon fixation cycle which is operated by the activities of succinyl-CoA synthetase, 2-oxoglutarate synthase, isocitrate dehydrogenase, and isocitrate lyase. Two carbon dioxide (CO.sub.2) molecules are fixed by the consecutive reactions of the enzymes to produce one glyoxylate molecule. In this process, one ATP molecule and two NADPH molecules are consumed. All metabolic intermediates of this novel carbon fixation cycle except ATP and NADPH may be regenerated through a series of enzymatic reactions.

[0074] FIG. 2 shows the favored direction (product-favored or substrate-favored) of enzyme reactions based on thermodynamic calculation at varying levels of substrates and products of four enzymes of carbon fixation cycle. We considered all reactions are performed at pH 7 and the concentrations of all salts other than substrates and products are fixed at 0.1 M. Panel A shows the delta free-energy profile of succinyl-CoA synthetase reaction according to the relative levels of succinate and succinyl-CoA which are the substrate and product of succinyl-CoA synthetase, respectively. We also assumed that CoA is present at 1 mM and the relative mole ratio of ATP and ADP is 1. Panel B shows the delta free-energy profile of 2-oxoglutarate synthase reaction according to the relative levels of succinyl-CoA and 2-oxoglutarate which are the substrate and product of 2-oxoglutarate synthase, respectively. It is assumed that the concentration of dissolved carbon dioxide is 1 mM; molar ratio of NADPH to NADP.sup.+ is 100; concentration ratio of succinyl-CoA to coenzyme A is 10. Panel C shows the delta free-energy profile of isocitrate dehydrogenase reaction according to the relative levels of 2-oxoglutarate and isocitrate which are the substrate and product of isocitrate dehydrogenase, respectively. It is assumed that the concentration of dissolved carbon dioxide is 1 mM; mole ratio of NADPH to NADP.sup.+ is 100. Panel D shows the delta free-energy profile of isocitrate lyase reaction according to the relative levels of isocitrate and glyoxylate which are the substrate and product of isocitrate lyase, respectively. Calculations and predictions were made assuming that the level of succinate, which is another product of isocitrate lyase reaction and a substrate of succinyl-CoA synthetase as well, is 10 mM.

[0075] FIG. 3 shows the results of forward and reverse reaction activities of purified 2-oxoglutarate synthase. Carboxylation reaction is carried out by adding succinyl-CoA as substrate, and then a decrease in optical density at 340 nm according to the decrease in NADPH is examined to determine activity. On the other hand, decarboxylation reaction is carried out using 2-oxoglutarate as substrate and then an increase in optical density at 340 nm according to the formation of NADPH is examined to determine activity. Enzyme activity is shown by reaction rate in mole/min.Math.mg protein.

[0076] FIG. 4 shows the results of carboxylation reaction of 2-oxoglutarate synthase. Upper panel shows the specific activity of 2-oxoglutarate synthase at varying levels of succinyl-CoA. Lower panel shows the specific activity of 2-oxoglutarate synthase at varying levels of sodium hydrogen carbonate (NaHCO.sub.3). In respective conditions, the enzyme reaction rate is expressed in mole/min.Math.mg protein.

[0077] FIG. 5 shows carboxylation and decarboxylation activities of isocitrate dehydrogenase at varying pH. MES buffer is used to prepare a pH range of 6 to 7, HEPES buffer to prepare a pH range of 7 to 8, and Tris buffer to prepare a pH range of 8 to 9. Upper panel shows the carboxylation reaction rate of isocitrate dehydrogenase in the presence of 2-oxoglutarate at respective pH values. Lower panel shows the decarboxylation reaction rate of isocitrate dehydrogenase in the presence of isocitrate at respective pH values. In respective conditions, the enzyme reaction rate is expressed in mole/min.Math.mg protein.

[0078] FIG. 6 shows the kinetic parameters for decarboxylation and carboxylation of isocitrate dehydrogenase at optimum pH values of each reaction. Isocitrate and NADP.sup.+ were used as substrates for decarboxylation reaction, whereas 2-oxoglutarate, NADPH and sodium hydrogen carbonate (NaHCO.sub.3) were used as substrates for carboxylation reaction.

[0079] FIG. 7 shows the glyoxylate production using the reaction mixture, which includes the purified enzymes of succinyl-CoA synthetase, 2-oxoglutarate synthase, isocitrate dehydrogenase and isocitrate lyase. For standard reaction, reaction mixture contains enzymes (each at 10 M), 0.5 mM NADPH, 1 mM adenosine triphosphate (ATP), 1 mM coenzyme A (CoA), 20 mM magnesium chloride (MgCl.sub.2), 12.5 mM glutathione (GSH), 20 mM sodium hydrogen carbonate (NaHCO.sub.3), and 5 mM succinate as initial substrate in 100 mM HEPES buffer (pH 7.0). To examine the effect of each component on reaction, each of succinyl-CoA synthetase, 2-oxoglutarate synthase, isocitrate dehydrogenase, isocitrate lyase, ATP, NADPH, sodium hydrogen carbonate, and succinate was omitted from the standard reaction mixture. In respective conditions, glyoxylate production rate is expressed in nmole/min.

BEST MODE

[0080] Hereinafter, the present invention will be described in further detail with reference to examples thereof. These examples are merely provided to describe the present invention in further detail, and thus it will be apparent to those skilled in the related art that the examples are not intended to limit the scope of the present invention according to the inventive concept.

EXAMPLES

Example 1: Prediction of Thermodynamic Characteristics of Novel Carbon Fixation Cycle

[0081] The present invention was designed to prepare the composition of reaction mixture, which leads to the CO.sub.2-fixation-favored reaction of the novel carbon dioxide fixation cycle based on the thermodynamic characteristics of enzyme reactions constituting the cycle. .sub.rG (KJ/mol) value of each reaction is used as an indicator to determine the thermodynamic characteristics of enzyme reaction, and represents the favored-direction (substrate-favored or product-favored) of reaction. In this case, when the .sub.rG value is less than 0, a forward reaction of the enzyme is possible. .sub.rG.sup.0 values under the standard condition, at which all the substrates and products are present at 1 M, are known. However, the direction of actual reactions cannot be predicted based on .sub.rG.sup.0 because the levels of substrate and product are not 1 M. A calculation method (Flamholz et al. 2012. Nucleic Acids Res. 40(D1): D770-D775) known to check .sub.rG values at varying levels of compositions was used. In this case, all reactions were considered to occur at pH 7.0, and the total concentration of salts other than the substrates and products was fixed at 0.1 M. Since a series of enzymatic reactions by four enzymes works in carbon dioxide fixation cycle, the product of each enzyme reaction becomes a substrate for the next enzyme reaction. Condition at which carbon dioxide fixation cycle operates in a direction to fix carbon dioxide was examined at varying the concentrations of various reaction components including glyoxylate.

[0082] FIG. 2 shows the thermodynamic calculation results for the four reactions according to the levels of substrates and products of the reactions constituting the novel carbon fixation cycle. FIG. 2A shows the direction of succinyl-CoA synthetase reaction according to the varying levels of succinate and succinyl-CoA, which are the substrate and product of succinyl-CoA synthetase, respectively. As a result, when succinate was present at level between 1 mM and 100 mM, and succinyl-CoA was present at level between 0.1 mM to 10 mM, the reaction tends to proceed forward. In fact, it was revealed that the reaction was product-favored even when two equivalents of succinyl-CoA were present per one equivalent of succinate. However, because a forward reaction of 2-oxoglutarate synthase, which is the next reaction, may be hindered by CoA at high level, the concentration of succinyl-CoA was preferably adjusted to a range of 0.1 mM to 10 mM. The relative concentration ratio of ATP and adenosine diphosphate (ADP) in this reaction composition was assumed to be 1. When the ratio of ATP to ADP is higher than 1, product-favored reaction is expected. FIG. 2B shows the direction of 2-oxoglutarate synthase reaction at varying levels of succinyl-CoA and 2-oxoglutarate, which are the substrate and product of 2-oxoglutarate synthase, respectively. As a result, when succinyl-CoA was present in a range of 1 mM to 10 mM, a forward reaction was predicted only when 2-oxoglutarate was present in a range of 0.001 mM to 0.01 mM. Accordingly, considering the next reaction, it is desirable to use an isocitrate dehydrogenase having a high K.sub.cat value as well as low K.sub.m value (high affinity) for 2-oxoglutarate. It was assumed that the level of dissolved carbon dioxide for reaction was 1 mM, but the forward reaction was more easily predicted when dissolved carbon dioxide was present at levels higher than 1 mM. It was assumed that the ratio of NADPH to NADP.sup.+ of the reaction was 100, and the ratio of the succinyl-CoA to CoA was 10, but the thermodynamic preference of the reaction can be easily adjusted by those skilled in the related art by adjusting the ratios of the components of the reaction mixture. FIG. 2C shows the direction of isocitrate dehydrogenase reaction at varying levels of 2-oxoglutarate and isocitrate, which are the substrate and product of isocitrate dehydrogenase, respectively. As a result, when 2-oxoglutarate was present in a range of 0.001 mM to 0.1 mM, a forward reaction was predicted only when isocitrate was present in a range of 0.1 M to 10 M. Accordingly, considering the next reaction, it is desirable to use isocitrate lyase having a high K.sub.cat value as well as low K.sub.m value (high affinity) for isocitrate. It was assumed that the concentration of dissolved carbon dioxide was 1 mM and the ratio of NADPH to NADP.sup.+ was 100, but the thermodynamic preference of the reaction can be easily adjusted by those skilled in the related art by adjusting the concentrations and ratios of the components in reaction mixture. FIG. 2D shows the direction of isocitrate lyase reaction according to the varying levels of isocitrate and glyoxylate, which are the substrate and product of isocitrate lyase, respectively. The level of succinate, which is another product of isocitrate lyase and a substrate of succinyl-CoA synthetase as well, was assumed to be 10 mM. Forward reaction was predicted when isocitrate level was present at a range of 0.1 M to 10 M, and glyoxylate at a range of 1 M to 100 M. In fact, isocitrate lyase reaction was predicted to proceed forward even when a hundred equivalents of glyoxylate was present per one equivalent of isocitrate. Thus, when the isocitrate is present at 10 M, a forward reaction is expected until the glyoxylate is present at a concentration of 1 mM. Proper substrate concentrations of four enzymes and glyoxylate also vary depending on the reaction temperature, pH, concentrations of salts and carbon dioxide, relative ratios of NADPH to NADP.sup.+, ATP to ADP, and that of succinyl-CoA to CoA, etc. Therefore, it will be apparent to those skilled in the related art that the proper substrate concentrations of four enzymes and glyoxylate used are not limited by the examples of the present invention.

Example 2: Acquisition of Genes Including Carbon Dioxide Fixation Enzymes

[0083] Genes of succinyl-CoA synthetase set forth in SEQ ID NOS: 1 and 2, isocitrate lyase set forth in SEQ ID NO: 3, 2-oxoglutarate synthase set forth in SEQ ID NOS: 4 and 5, and isocitrate dehydrogenase set forth in SEQ ID NO: 6 were cloned and expressed in E. coli for the purification of the corresponding enzymes. The genes coding for succinyl-CoA synthetase, which is composed of two subunits set forth in SEQ ID NOS: 1 and 2, and the isocitrate lyase set forth in SEQ ID NO: 3 were all isolated from E. coli. Histidine tag (His-tag) was linked to the N terminus or C terminus of each of three proteins through polymerase chain reactions using E. coli chromosomal DNA as a template. To clone the gene encoding an -subunit of succinyl-CoA synthetase, a forward primer set forth in SEQ ID NO: 7 and a reverse primer set forth in SEQ ID NO: 8 were used. Here, the forward primer was designed to modify the start ATG codon of protein and insert a BamHI site as well. The reverse primer was designed to insert the HindIII site. To clone the gene encoding the -subunit of succinyl-CoA synthetase, a forward primer set forth in SEQ ID NO: 9 and reverse primer set forth in SEQ ID NO: 10 were used. Here, the forward primer was designed to modify the start codon of protein and insert the EcoRI site as well. The reverse primer was designed to modify the stop codon and insert the BamHI site as well. To clone the gene of isocitrate lyase, a forward primer set forth in SEQ ID NO: 11 and a reverse primer set forth in SEQ ID NO: 12 were used. Here, the forward primer was designed to modify the start codon of protein and insert the BamHI site as well. The reverse primer was designed to insert HindIII site. All DNA fragments from polymerase chain reaction were cloned into protein expression vector pQE30 (Qiagen) containing a histidine tag. As results, N termini of succinyl-CoA synthetase -subunit and isocitrate lyase were linked to the histidine tag, and the C terminus of succinyl-CoA synthetase -subunit was linked to the histidine tag.

[0084] The deduced amino acid sequences of 2-oxoglutarate synthase set forth in SEQ ID NOS: 4 and 5 and that of isocitrate dehydrogenase set forth in SEQ ID NO: 6 were obtained from the genome of green sulfur bacterium, C. tepidum. The base sequences of 2-oxoglutarate synthase and isocitrate dehydrogenase were optimized according to the codon usage of E. coli for the efficient protein expression in E. coli. The N-termini of the two subunits of 2-oxoglutarate synthase and isocitrate dehydrogenase were linked to Strep-tag through polymerase chain reaction using the codon-optimized DNA fragments as templates. A forward primer set forth in SEQ ID NO: 13 and a reverse primer set forth in SEQ ID NO: 14 were used to construct the expression plasmid for the -subunit of 2-oxoglutarate synthase, and a forward primer set forth in SEQ ID NO: 15 and a reverse primer set forth in SEQ ID NO: 16 were used to construct the expression plasmid for the -subunit of 2-oxoglutarate synthase. Also, a forward primer set forth in SEQ ID NO: 17 and a reverse primer set forth in SEQ ID NO: 18 were used to construct the expression plasmid for isocitrate dehydrogenase. The forward primers of SEQ ID NOS: 13, 15 and 17 were designed to modify the start codon of proteins and insert the BsaI site as well. The reverse primers of SEQ ID NOS: 14, 16 and 18 were also designed to insert the BsaI site. All DNA fragments from polymerase chain reactions were ligated to protein expression vector pIBA7plus (IBA) containing a Strep-tag. As results, the N-termini of the two subunits of 2-oxoglutarate synthase and that of isocitrate dehydrogenase were linked to Strep-tag.

Example 3: Purification of Enzymes Including Carbon Dioxide Fixation Enzymes

[0085] Each of the -subunit and -subunit of succinyl-CoA synthetase set forth in SEQ ID NOS: 19 and 20, isocitrate lyase set forth in SEQ ID NO: 21, -subunit and -subunit of the 2-oxoglutarate synthase set forth in SEQ ID NOS: 22 and 23, and the isocitrate dehydrogenase set forth in SEQ ID NO: 24 were expressed in E. coli BL21 (DE3) and purified. E. coli BL21 (DE3) was transformed with each of the six expression plasmids constructed in Example 2. The recombinant E. coli strains were cultured in Luria-Bertani (LB) media whose usage is widely known. The expression and purification of the -subunit and -subunit of succinyl-CoA synthetase and isocitrate lyase were performed under aerobic condition. The recombinant E. coli strains were inoculated into a 1 L flask containing 500 mL LB medium and cultured on a shaker (250 revolutions per minute) at 30 C. under aerobic condition. Isopropyl -D-thiogalactopyranoside (IPTG) was added at 0.4 mM when culture turbidity (absorbance at 600 nm, A.sub.600) reached approximately 0.4. Then, cell culture continued for the induction of enzyme expression under the same growth condition until A.sub.600 reached approximately 2.0. Cells were harvested by centrifugation at approximately 7,000 g at 4 C. for 10 minutes, followed by suspension in approximately 10 mL of 50 mM sodium dihydrogen phosphate (NaH.sub.2PO.sub.4) buffer (pH 7.9) at 4 C., which contains 10 mM imidazole, 250 mM sodium chloride (NaCl) and a protease inhibitor. Cells were sonicated four times, 5 minutes each with 50% due cycle on ice (total 20 minutes). The disrupted cells were centrifuged at approximately 10,000 g at 4 C. for 30 minutes to remove the unbroken cells and large cell debris. Finally, affinity purification using histidine-tag was performed to purify succinyl-CoA synthetase - and -subunits and isocitrate lyase according to the method recommended by manufacturer (Qiagen)

[0086] Conversely, recombinant E. coli strains expressing 2-oxoglutarate synthase - and -subunits and isocitrate dehydrogenase were cultured under aerobic condition, but the expression and purification of enzymes were performed under anaerobic condition. Recombinant E. coli BL21 (DE3) strains were inoculated into 300 mL flask containing 30 mL LB medium, and cultured on shaker (250 rpm) at 30 C. under aerobic condition. When the culture turbidity (A.sub.600) reached approximately 1.0, cells were transferred to 4 L culture vessel, and the vessel was fully filled with LB medium. Then, culture vessel was bubbled with nitrogen gas for 5 minutes and plugged with butyl rubber stopper to avoid exposure to air. Then, cells were cultured at 30 C., and anhydrotetracycline was added at 0.2 g/mL to induce the enzyme expression when culture turbidity (A.sub.600) reached approximately 0.2. Culture continued under the same growth condition until A.sub.600 reached approximately 1.0. All purification procedures of proteins were carried out in anaerobic chamber (Model 10, COY Lab) filled with a gas mixture of 5% hydrogen, 5% carbon dioxide, and 90% nitrogen, unless stated otherwise. Cells were harvested by centrifugation at 7,000 g at 4 C. for 10 minutes, followed by suspension in 20 mL of 100 mM Tris buffer (pH 8.0) at 4 C., which contains 150 mM sodium chloride and protease inhibitor. Cells were sonicated four times, 5 minutes each with 50% due cycle on ice (total 20 minutes) under anaerobic condition. The disrupted cells were centrifuged at approximately 10,000 g at 4 C. for 30 minutes to remove the unbroken cells and large cell debris. Finally, affinity purification using Strep-tag was performed to purify 2-oxoglutarate synthase - and -subunits, and isocitrate dehydrogenase according to the method recommended by manufacturer (IBA). The purified proteins were separated by 12% SDS-polyacrylamide gel (12%) electrophoresis to confirm the molecular mass of each enzyme, using the standard marker proteins.

Example 4: Confirmation of Carbon Dioxide Fixation Activity of 2-Oxoglutarate Synthase

[0087] 2-Oxoglutarate synthase is known to have different characteristic according to the source organism, and generally decarboxylation activity is preferred over carboxylation. However, since C. tepidum is a bacterium having ability to grow through carbon dioxide fixation by reductive citric acid cycle, it was predicted that the 2-oxoglutarate synthase of C. tepidum, which was purified as described in Example 3, easily showed carboxylation activity. To examine the carbon dioxide fixation in vitro, reaction mixture of 2-oxoglutarate synthase was prepared as follows: 100 g ferredoxin, 0.05 U ferredoxin:NADP.sup.+ reductase, 1 mM dithiothreitol, 1 mM magnesium chloride (MgCl.sub.2), and 20 mM sodium hydrogen carbonate (NaHCO.sub.3) were dissolved in 50 mM HEPES (4-(2-hydroxyethyl)piperazine-ethanesulfonic acid) buffer (pH 7.0). The ferredoxin and ferredoxin:NADP.sup.+ reductase were derived from spinach. Carboxylation reaction of 2-oxoglutarate synthase was performed at 30 C. by adding 0.25 mM succinyl-CoA as a substrate and 0.25 mM NADPH as an electron donor to the reaction mixture. On the other hand, decarboxylation reaction of 2-oxoglutarate synthase was performed at 30 C. by adding 0.25 mM 2-oxoglutarate as a substrate and 0.25 mM NADP.sup.+ as an electron accepter to the reaction mixture. FIG. 3 shows the results of bidirectional activities of the purified 2-oxoglutarate synthase. It was revealed that 2-oxoglutarate synthase carried out carboxylation reaction using succinyl-CoA as a substrate, and showed the reaction rate of approximately 0.9 mole/min.Math.mg protein. 2-Oxoglutarate synthase also mediated decarboxylation reaction in the presence of 2-oxoglutarate, and showed a reaction rate of approximately 6.0 mole/min.Math.mg protein. Therefore, C. tepidum-derived 2-oxoglutarate synthase has relatively higher decarboxylation activity compared with carboxylation. However, carboxylation activity of 2-oxoglutarate synthase can be maintained dominantly over decarboxylation as long as succinyl-CoA is kept at higher level as compared with that of 2-oxoglutarate during reaction. In this example, ferredoxin was used to transfer electron to the 2-oxoglutarate synthase from NADPH by ferredoxin:NADP.sup.+ reductase. The type of electron donor may also be easily selected from NADPH, NADH or pyruvate, and applied according to the types of the ferredoxin and ferredoxin:NADP.sup.+ reductase by those skilled in the related art.

Example 5: Conditions for 2-Oxoglutarate Synthase-Mediated Carbon Dioxide Fixation

[0088] 2-Oxoglutarate level was measured using various methods capable of selectively detecting 2-oxoglutarate (measuring a final product having optical density or fluorescence at certain wavelengths using enzymatic reaction, in which 2-oxoglutarate was consumed in proportion to the formation of the final product). The optimum method may be determined according to the purpose of research and development by those skilled in the related art. In this work, 2-oxoglutarate measurement kit (Sigma-Aldrich) was used to quantitatively measure the 2-oxoglutarate produced in this example. Reaction mixture was prepared as follows: 100 g ferredoxin, 0.05 U ferredoxin:NADP.sup.+ reductase, 1 mM dithiothreitol, 1 mM magnesium chloride, and 0.25 mM NADPH in 50 mM HEPES buffer (pH 7.0). 2-Oxoglutarate synthesis was determined by measuring the emission at 587 nm with respect to excitation at 535 nm using a spectrofluorometer. Standard curve was prepared, using 2-oxoglutarate measurement kit with the varying levels of 2-oxoglutarate. The level of 2-oxoglutarate after carboxylation reaction was determined from the standard curve. The level of the produced 2-oxoglutarate thus determined was expressed as a value with time, and the 2-oxoglutarate production rate was expressed in mole of 2-oxoglutarate produced per minute per unit protein. An upper panel of FIG. 4 shows the results of carboxylation reaction of 2-oxoglutarate synthase by adding succinyl-CoA at varying levels to the reaction mixture. In this reaction, the concentration of sodium hydrogen carbonate was fixed at 20 mM. Based on the reaction results, carboxylation rate of 2-oxoglutarate synthase was saturated at maximum level when succinyl-CoA as the substrate was added at approximately 0.1 mM or more. A lower panel of FIG. 4 shows the results of carboxylation reaction of 2-oxoglutarate synthase in the presence of sodium hydrogen carbonate, which is another substrate of 2-oxoglutarate synthase, at varying levels. In this reaction, the concentration of succinyl-CoA was fixed at 0.25 mM. From the reaction results, the minimum concentration of sodium hydrogen carbonate for the maximum carboxylation rate of 2-oxoglutarate synthase was approximately 5 mM. In addition to the sodium hydrogen carbonate, it is possible to use various compounds forming carbonate in aqueous solution, or use carbon dioxide itself after it is dissolved in solution. The optimum carbon dioxide source and the use thereof can be determined according to the purpose of research and development by those skilled in the art.

Example 6: Confirmation of Carbon Dioxide Fixation Activity of Isocitrate Dehydrogenase

[0089] Isocitrate dehydrogenase is known to have the preference for either decarboxylation or carboxylation activity according to pH (Lebedeva et al., 2002. Microbiology 71: 657-662). Therefore, Varying pH Conditions were Prepared to Determine decarboxylation and carboxylation activities of isocitrate dehydrogenase. 2-(N-morpholino)ethanesulfonic acid (MES) buffer was used to prepare a pH range of 6 to 7; HEPES buffer was used to prepare a pH range of 7 to 8; 2-amino-2-(hydroxymethyl)-1,3-propanediol (Tris) buffer was used to prepare a pH range of 8 to 9. The carboxylation activity of isocitrate dehydrogenase was examined in reaction mixture, which contains 8 mM 2-oxoglutarate as a substrate, 0.2 mM NADPH as an electron donor, 40 mM magnesium chloride (MgCl.sub.2), and 20 mM sodium hydrogen carbonate (NaHCO.sub.3) in 100 mM buffer. The reaction was performed at 30 C. Conversely, the decarboxylation activity of isocitrate dehydrogenase was examined in reaction mixture, which contains 0.4 mM isocitrate as a substrate, 0.2 mM NADP.sup.+ as an electron accepter, 40 mM magnesium chloride (MgCl.sub.2), and 20 mM sodium hydrogen carbonate (NaHCO.sub.3) in 100 mM buffer. The reaction was also performed at 30 C. Isocitrate, which is the carboxylation product of isocitrate dehydrogenase can be measured, using various methods capable of selectively detecting the compound (measuring a final product having optical density or fluorescence at certain wavelengths using enzymatic reaction, in which isocitrate was consumed in proportion to the formation of the final product). The optimum method can be determined according to the purpose of research and development by those skilled in the related art. An isocitrate measurement kit (Sigma-Aldrich) was used as a method of quantitatively measuring isocitrate formed in this example. On the other hand, 2-oxoglutarate, a decarboxylation product of isocitrate dehydrogenase was determined, using the method exemplified in Example 4. FIG. 5 shows enzymatic activities of the isocitrate dehydrogenase at varying pHs. Upper panel shows the carboxylation activity of isocitrate dehydrogenase under varying pH conditions. The isocitrate dehydrogenase had the optimum carboxylation activity at neutral pH 7.0. Lower panel shows the decarboxylation activity of isocitrate dehydrogenase under varying pH conditions. The isocitrate dehydrogenase had the optimum decarboxylation activity at weakly basic pH 8.5. Therefore, the isocitrate dehydrogenase of C. tepidum has relatively higher carboxylation activity as compared with the decarboxylation activity at neutral pH, and this property can be directly used for the carbon dioxide fixation using isocitrate dehydrogenase in vitro.

Example 7: Conditions for Isocitrate Dehydrogenase-Mediated Carbon Dioxide Fixation

[0090] Kinetic characteristics of decarboxylation and carboxylation activities of isocitrate dehydrogenase were determined. FIG. 6 illustrates the kinetic results of decarboxylation and carboxylation activities of isocitrate dehydrogenase, which were determined at optimum pH of 8.5 and 7.0, respectively. The decarboxylation rate of isocitrate dehydrogenase, which uses isocitrate as a substrate and NADP.sup.+ as an electron accepter, was approximately 95 mole/min.Math.mg protein. The carboxylation rate of isocitrate dehydrogenase, which uses 2-oxoglutarate and sodium hydrogen carbonate as substrates and NADPH as an electron donor, was approximately 33 mole/min.Math.mg protein. The isocitrate dehydrogenase showed similar affinities for NADPH and NADP.sup.+, but the enzyme exhibited relatively higher affinity for isocitrate as compared to for 2-oxoglutarate. Because the affinity of isocitrate dehydrogenase of C. tepidum for sodium hydrogen carbonate was three times lower than those of the conventional isocitrate dehydrogenase isozymes, whose K.sub.m values for sodium hydrogen carbonate were known, the isocitrate dehydrogenase of C. tepidum seemed to be an enzyme having a relatively high tendency toward carboxylation. The enzyme had a higher decarboxylation rate based on K.sub.cat value. Accordingly, the 2-oxoglutarate level has to be maintained at higher level as compared with that of isocitrate in reaction mixture for carboxylation. In addition, the enzyme reaction will be carboxylation-favored under pH 7.0 condition. In addition to the sodium hydrogen carbonate, it is possible to use various compounds forming carbonate in aqueous solution, or use carbon dioxide itself after it is dissolved in solution. The optimum carbon dioxide source and the use thereof can be determined according to the purpose of research and development by those skilled in the art.

Example 8: Production of Glyoxylate Using Novel Carbon Dioxide Fixation Cycle

[0091] In this example, glyoxylate was produced using the reaction mixture, which included all four enzymes constituting the novel carbon dioxide fixation cycle. Glyoxylate was measured according to the method known in the related art (McFadden. 1969. Methods Enzymol. 13: 163-170). Change in optical density of reaction solution at 520 nm was measured to determine glyoxylate by comparison to the standard curve, which had been prepared using the known levels of glyoxylate. FIG. 7 shows the glyoxylate production rate using the standard reaction mixture containing succinyl-CoA synthetase, 2-oxoglutarate synthase, isocitrate dehydrogenase and isocitrate lyase, which were isolated using the method exemplified in Example 3. Standard reaction mixture contains all four enzymes at 10 M each, 0.5 mM NADPH, 1 mM ATP, 1 mM coenzyme A, 20 mM magnesium chloride, 12.5 mM glutathione, 20 mM sodium hydrogen carbonate, and 5 mM succinate as a starting material in 100 mM HEPES buffer (pH 7.0). To examine the effect of each component on glyoxylate production, reactions are performed in the reaction mixture devoid of one component, which could be either succinyl-CoA synthetase, 2-oxoglutarate synthase, isocitrate dehydrogenase, isocitrate lyase, ATP, NADPH, sodium hydrogen carbonate, or succinate. Glyoxylate was readily produced in standard reaction mixture. However, glyoxylate was hardly produced in the reaction mixture devoid of one component: when one of four enzymes was excluded from reaction, glyoxylate production was barely detected; when ATP or NADPH was excluded from reaction, the same was true. Conversely, even if sodium hydrogen carbonate was excluded from reaction, glyoxylate was still produced at 8% of the level from the standard reaction mixture. We assume that glyoxylate was synthesized, using carbon dioxide dissolved in buffer. Therefore, it could be seen that the carbon dioxide fixation cycle can work even at atmospheric carbon dioxide concentration to produce glyoxylate. In this example, succinate was used as a starting material of the carbon dioxide fixation cycle. Because glyoxylate was produced from the cycle, it was confirmed that four enzymes work together to form the cyclic reactions. Either succinyl-CoA, 2-oxoglutarate or isocitrate, which constitute the carbon dioxide fixation cycle, is applicable as a starting material of the carbon fixation cycle, and the optimum starting material and the use thereof can be determined according to the purpose of research and development by those skilled in the art.

[0092] Although the exemplary embodiments of the present invention have been described in detail, the present invention can be modified and implemented in various forms, and therefore, only specific embodiments are described in detail. However, the present invention is not limited to specific disclosures, and it should be understood that the present invention includes all modifications, equivalents and alternatives included in the technical idea and scope of the present invention.