ENZYMES FOR REMOVING SULFUROUS COMPOUNDS IN DOWNHOLE FLUIDS
20170137790 ยท 2017-05-18
Assignee
Inventors
Cpc classification
C09K8/58
CHEMISTRY; METALLURGY
E21B43/16
FIXED CONSTRUCTIONS
C12N9/1085
CHEMISTRY; METALLURGY
International classification
C09K8/62
CHEMISTRY; METALLURGY
C09K8/58
CHEMISTRY; METALLURGY
Abstract
Cysteine synthase or O-Acetyl-L-Serine Sulfhydrylase enzymes, such as those derived from the Aeropyrum pernix bacterium, may be used in additive compositions, fluid compositions, and methods for decreasing or removing hydrogen sulfide from recovered downhole fluids and/or the subterranean reservoir wellbore from which the downhole fluid was recovered. The fluid composition may include at least one cysteine synthase enzyme and a base fluid, such as a drilling fluid, a servicing fluid, a production fluid, a completion fluid, an injection fluid, a refinery fluids, and combinations thereof.
Claims
1. An additive composition for a base fluid selected from the group consisting of a drilling fluid, a completion fluid, a production fluid, a servicing fluid, an injection fluid, a refinery fluid, and combinations thereof; wherein the additive composition comprises at least one cysteine synthase enzyme that is at least 75% homologous to the cDNA sequence of SEQ ID NO:1.
2. The additive composition of claim 1, wherein the concentration of the at least one cysteine synthase enzyme within the additive composition ranges from about 1 nanomolar (nM) independently to about 5 millimolar (mm).
3. The additive composition of claim 1, further comprising an additional component selected from the group consisting of a pyridoxal phosphate, O-acetyl-serine, dithiothreitol (DTT), and combinations thereof.
4. The additive composition of claim 1, wherein the at least one cysteine synthase enzyme forms cysteine in the absence of pyridoxal phosphate.
5. The additive composition of claim 1, further comprising O-acetyl-L-serine in a concentration ranging from about 1 mM to about 20 mM.
6. The additive composition of claim 1 further comprising dithiothreitol (DTT) in a concentration ranging from about 0.25 mM to about 5 mM.
7. A fluid composition comprising: a base fluid selected from the group consisting of drilling fluids, servicing fluids, production fluids, completion fluids, injection fluids, refinery fluids, and combinations thereof; and at least one cysteine synthase enzyme that is at least 75% homologous to the cDNA sequence of SEQ ID NO:1.
8. The fluid composition of claim 7, wherein the concentration of the at least one cysteine synthase enzyme within the additive composition ranges from about 1 nanomolar (nM) independently to about 5 millimolar (mm) as compared to the total base fluid.
9. The fluid composition of claim 7, wherein the fluid composition further comprises an additional component selected from the group consisting of a pyridoxal phosphate, O-acetyl-serine, dithiothreitol (DTT), and combinations thereof.
10. The fluid composition of claim 7, wherein the fluid composition further comprises at least one sulfur-containing compound; and wherein the fluid composition comprises the sulfur-containing compound in a reduced amount as compared to an identical fluid composition absent the at least one cysteine synthase enzyme.
11. The fluid composition of claim 7, further comprising O-acetyl-L-serine in a concentration ranging from about 1 mM to about 20 mM.
12. The fluid composition of claim 7 further comprising DTT in a concentration ranging from about 0.25 mM to about 5 mM.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0023] In order to more fully understand the drawings referred to in the detailed description, a brief description of each drawing is presented here:
[0024]
[0025]
[0026]
[0027]
[0028]
DETAILED DESCRIPTION
[0029] It has been discovered that an additive composition having a cysteine synthase derived from Aeropyrum pernix may be added to a base fluid to decrease an amount of sulfur-species in the base fluid. Alternatively, a fluid composition comprising a cysteine synthase derived from Aeropyrum pernix may be circulated in a subterranean reservoir wellbore to decrease an amount of sulfur-species compounds present in the subterranean reservoir wellbore and/or any downhole fluids recovered therefrom. In addition to being biodegradable, the cysteine synthase enzyme may be less toxic to the environment and may be made from renewable resources. The use of cysteine synthase enzymes in a base fluid may provide a renewable alternative to conventional additives (non-biodegradable) that are used in downhole fluids to decrease sulfur-containing compounds. In a non-limiting embodiment, the cysteine synthase may be or include, but is not limited to, O-Acetyl-Serine Sulfhydrylase (OASS).
[0030] The additive and/or fluid composition may further include an additional component, such as but not limited to, a pyridoxal phosphate, O-acetyl-serine, DTT, and combinations thereof; the additional component(s) may be added to the base fluid at the same time or a different time from the cysteine synthase enzyme. In a non-limiting embodiment, the pyridoxal phosphate may be added to the base fluid in a concentration ranging from about 0.1 mM independently to about 5 mM, alternatively from about 1 mM independently to about 4 mM. In a non-limiting embodiment, the additive and/or fluid composition does not include pyridoxal phosphate. In another non-limiting embodiment, the DTT may be added to the base fluid in a concentration ranging from about 0.25 mM independently to about 5 mM, alternatively from about 1 mM independently to about 3 mM.
[0031] In a non-limiting embodiment, the O-acetyl-serine (OAS) may be added to the base fluid in a concentration that is substantially equal to or more than the amount of suspected hydrogen sulfide present in the base fluid and/or the subterranean reservoir wellbore. In an alternative non-limiting embodiment, the OAS may be added to the base fluid in a concentration ranging from about 1 mM independently to about 20 mM, alternatively from about 5 mM independently to about 15 mM.
[0032] Cysteine synthase enzymes may remove or decrease sulfur-containing compounds, e.g. hydrogen sulfide (H.sub.2S) in a non-limiting embodiment, within a recovered downhole fluid from a subterranean reservoir wellbore and/or decrease the amount of hydrogen sulfide or other sulfur-containing compounds in the wellbore from which the downhole fluid was recovered. The cysteine synthase enzyme may catalyze the reaction of an O-acetyl-L-serine and hydrogen sulfide to form L-cysteine and acetate. In a non-limiting embodiment, hydrogen sulfide is converted into L-cysteine in a 1:1 ratio, i.e. one mole of H.sub.2S forms one mole of L-cysteine. Likewise, O-acetyl-L-serine and hydrogen bind to the enzyme in a 1:1 ratio.
[0033] Cysteine synthase enzyme is defined herein to be the active site of the cysteine synthase enzyme to convert hydrogen sulfide into L-cysteine and acetate. The active site may be or include the whole protein, an active fragment of the protein, a mimetic of the protein, and combinations thereof. Fragment as used herein is meant to include any amino acid sequence shorter than the full-length cysteine synthase enzyme, but where the fragment maintains similar activity to the full-length cysteine synthase enzyme. Fragments may include a single contiguous sequence identical to a portion of the cysteine synthase enzyme sequence. Alternatively, the fragment may have or include several different shorter segments where each segment is identical in amino acid sequence to a different portion of the amino acid sequence of the cysteine synthase enzyme, but linked via amino acids differing in sequence from the cysteine synthase enzyme. Mimetic as used herein may include polypeptides, which may be recombinant, and peptidomimetics, as well as small organic molecules, which exhibit similar or enhanced catalytic activity as compared to the cysteine synthase enzyme described herein.
[0034] The gene for the cysteine synthase enzyme may be codon optimized to increase the efficiency of its expression in E. coli. The nucleotide sequence of one embodiment of the cysteine synthase enzyme is set forth in
[0035] The cysteine synthase enzyme may be a homodimer, i.e. two subunits that are the same, where each subunit may have a pyridoxal phosphate as a cofactor. However, as previously mentioned, the cysteine synthase enzyme may function in the absence of a pyridoxal phosphate cofactor.
[0036] The primary structural sequence is the linear sequence of amino acids that are linked together by peptide bonds to form the primary structure of the cysteine synthase enzyme. The secondary structure of the protein refers to the base pairing interactions within a single molecule or set of interacting molecules, such as a beta-helix in the cysteine synthase enzyme. Tertiary structure refers to the three-dimensional structure of the cysteine synthase enzyme formed from the nucleotide sequence. Quaternary structure refers to the interaction between at least two tertiary structures.
[0037] To obtain the cysteine synthase enzyme, the Aeropyrum pernix bacterium may be plated on a growth medium, such as an agar, which is conducive to the growth of the Aeropyrum pernix bacterium in a non-limiting embodiment. The cysteine synthase enzyme may be directly isolated from the Aeropyrum pernix to be added to or used within a fluid composition for decreasing a sulfur-containing compound in a fluid composition and/or a subterranean reservoir wellbore. Isolated is defined herein to denote that the cysteine synthase enzyme has been removed from the intact cells or cellular debris, and is in a condition other than its native environment, is free of other extraneous or unwanted nucleic acids, proteases, and lipids, in a form suitable for use as a cysteine synthase enzyme as described herein.
[0038] In a non-limiting embodiment, the cysteine synthase gene of the Aeropyrum pernix bacterium may be inserted into a plasmid vector. A vector is a DNA molecule that may be used as a vehicle to artificially carry genetic material from a foreign cell and/or organism. A plasmid is defined as a circular extrachromosomal element found naturally in bacteria and some other organisms, which may be genetically engineered to clone DNA fragments. The plasmid may then be inserted into a host bacterium cell, such as Escherichia coli, where the host cell may replicate and/or express the foreign DNA. The E. coli cells may be plated on a growth medium, such as an agar, which is conducive to the growth of E. coli. The growth of E. coli propagates the cysteine synthase enzyme as clones within each E. coli cell. The cysteine synthase enzyme may be isolated from the E. coli cells and added to or used within a fluid composition.
[0039]
[0040] The SET3tag may increase the solubility of any problem proteins within E. coli. Although the mechanism by which the SET tag may improve solubility has not been confirmed, the SET tag may enhance solubility of the fusion protein by providing a net negative charge, which is thought to prevent aggregation and provide more time for correct protein folding in vivo.
[0041] The multiple cloning site (MCS) is a short segment of DNA that has several restriction sites, such as Nde1 and BamH1 in a non-limiting embodiment. Nde1 is a type II restriction enzyme that may cut open specific sequence targets; specifically, Nde1 may be used to cut open the reading frames in the plasmid to insert the cysteine synthase enzyme genes. BamHI is also a type II restriction endonuclease that recognizes the sequence 5-GGATCC-3, and cleaves these sequences just after the 5-guanine on each strand to leave sticky ends that are 4 base pairs long.
[0042] Ampicillin (Amp.sup.R) regulates the expression of -lactamase, pBR322 ori is the DNA sequence that signals for the origin of replication (also known as origin), and lacI codes for the lactose repressor.
[0043] To isolate or obtain the cysteine synthase enzyme from E. coli, the E. coli cells may be harvested via centrifugation to produce a cell pellet. The cell pellet may be lysed either by physical means or by chemical means, such as detergents and/or enzymes (e.g. lysozyme) to produce a lysate. The raw lysate may contain the recombinant protein, as well as other proteins originating from the bacterial host.
[0044] The cysteine synthase enzyme may be in a powder form and/or a liquid form (e.g. in solution) when added to or included in the base fluid. The cysteine synthase enzyme may be part of an additive where the additive includes the cysteine synthase enzyme, as well as other components to aid the cysteine synthase enzyme in decreasing the amount of sulfur-containing compounds in a fluid composition and/or a subterranean reservoir wellbore.
[0045] The additive may include a cysteine synthase enzyme that is at least 75% homologous to the cDNA sequence of SEQ ID NO:1. cDNA is defined herein as DNA synthesized from a messenger RNA (mRNA) template in an enzymatic catalyzed reaction using reverse transcriptase. The additive may include the cysteine synthase enzyme within the additive composition in a concentration ranging from about 1 nanomolar (nM) independently to about 5 millimolar (mm), alternatively from about 10 nM independently to about 1 mm, or from about 1 micromolar (M) independently to about 5 (M) as compared to the total base fluid.
[0046] In a non-limiting embodiment, the reaction may occur for at least 30 minutes, alternatively from about 30 minutes independently to about 4 hours, or from about 1 hour independently to about 4 hours. In a non-limiting embodiment, the cysteine synthase enzyme may maintain optimal function at a temperature ranging from about 75 F. independently to about 180 F., alternatively from about 100 F. independently to about 160 F. The cysteine synthase enzyme may maintain optimal function at a pressure less than about 15,000 pounds per square inch (psi). The cysteine synthase enzyme may maintain optimal function at a pH ranging from about 4 independently to about 11, alternatively from about 5 independently to about 8. The cysteine synthase enzyme may still function at a decreased reaction rate, if at all, outside of the ranges mentioned for temperature, pressure, and/or pH.
[0047] The additive may be added to a base fluid to form a fluid composition. The base fluid may be or include, but is not limited to, a drilling fluid, a completion fluid, a production fluid, a servicing fluid, an injection fluid, a refinery fluid, and combinations thereof. In a non-limiting embodiment, the base fluid may be an aqueous fluid, a non-aqueous fluid, and combinations thereof. In another non-limiting embodiment, the base fluid or fluid composition may be contained in an oil pipeline, gas pipeline, a refinery (e.g. separation vessels, dehydration units, gas lines, and pipelines), and combinations thereof.
[0048] The fluid composition comprising at least one cysteine synthase that is at least 75% homologous to the cDNA sequence of SEQ ID NO:1 may be circulated into a subterranean reservoir wellbore to decrease an amount of sulfur-containing compounds within the subterranean reservoir wellbore and/or any downhole fluids recovered therefrom. In yet another non-limiting embodiment, the fluid composition may include a salt, such as but not limited to, a brine, sea salt, and combinations thereof. The brine may be or include, but is not limited to potassium chloride, sodium chloride, calcium chloride, zinc chloride, potassium bromide, sodium bromide, calcium bromide, zinc bromide, sodium formate, potassium formate, ammonium formate, cesium formate, and combinations thereof.
[0049] Derived from with respect to the cysteine synthase enzyme is meant to include whole cysteine synthase enzymes or cysteine synthase enzyme fragments, where the cysteine synthase enzyme originated from Aeropyrum pernix bacterium and was isolated from that particular species; derived from also encompasses polypeptides identical in DNA and/or amino acid sequence to the active site (e.g. the cleft between C and N terminal domains and Lysine 47 site in a non-limiting example) of the Aeropyrum pernix bacterium that are recombinantly expressed in a host cell expression system or chemically synthesized. Recombinant DNA is DNA that has been formed artificially by combining constituents from different organisms, such as inserting the cysteine synthase enzyme into an E. coli host cell for a cloned reproduction of the cysteine synthase enzyme in a non-limiting example.
[0050] Derived from also includes derivatives of the Aeropyrum pernix cysteine synthase enzymes, such as a polypeptide or fragment that may be substantially similar in primary structural sequence to a cysteine synthase enzyme described herein, but which may include chemical and/or biochemical modifications that are not found in the native polypeptide. Such modifications may be or include, but are not limited to a label, such as a radioactive isotope, a fluorophore, or an enzymatic label useful in tracing the cysteine synthase enzyme. The label or other modification may be useful in isolating the cysteine synthase enzyme from the Aeropyrum pernix bacterium and/or other expression system (E. coli as described below). The label or other modification may be used to identify the cysteine synthase enzyme once the downhole fluid composition needs to be recovered from a subterranean reservoir wellbore and/or recovering the cysteine synthase enzyme from the fluid composition. Other non-limiting modifications may be or include a nucleotide mutagenesis to impart additional thermostability and pH tolerance to the cysteine synthase enzyme.
[0051] The method may include decreasing the amount of at least one sulfur-containing compound within the fluid composition and/or within a subterranean reservoir wellbore. Parameters that may be used to assess the effectiveness of the cysteine synthase enzyme may include measurements of cysteine formation kinetics, amount of sulfur-containing compounds present in the recovered downhole fluids and/or subterranean reservoir wellbore before and after treatment with the additive and/or fluid composition, and the like. Methods for measuring these parameters may be used to assess the ability of the cysteine synthase enzyme to reduce, decrease, or inactivate sulfur-containing compounds. Effective concentration is defined herein to mean any concentration of cysteine synthase enzyme that may decrease or reduce the amount of sulfur-containing compounds within the fluid composition, a subterranean reservoir wellbore and a downhole fluid recovered therefrom; alternatively, effective concentration is defined herein to mean any amount of the cysteine synthase enzyme that may decrease the amount of sulfur-containing compounds.
[0052] The invention will be further described with respect to the following Examples, which are not meant to limit the invention, but rather to further illustrate the various embodiments.
EXAMPLES
Example 1
[0053] Two separate experiments were conducted with two sets of samples where cysteine and H.sub.2S concentrations were measured after completion of each reaction within each sample.
[0054] Samples 1 and 5 were the blanks for each set that do not contain cysteine synthase. Samples 2 and 6 included an O-Acetyl-Serine (OAS) in a concentration of 5 mM, pyridoxal-5-phosphate (PLP) in an amount of 0.25 mM, and a cysteine synthase enzyme, i.e. an O-Acetyl-Serine Sulfhydrylase (OASS) enzyme, in an amount of 50 L (about 200 nanograms of enzyme). Samples 3 and 7 included OAS in a concentration of 5 mM, PLP in a concentration of 0.25 mM, and the OASS enzyme in an amount of 50 L. Samples 4 and 8 included OAS in a concentration of 5 mM, no PLP, and the OASS enzyme in an amount of 50 L.
[0055] An increased absorbance measurement at 560 nm represents an increased amount of cysteine formed from each sample. The reactions treated with the cysteine synthase enzyme showed higher concentrations of cysteine compared to the blanks (samples 1 and 5), indicating that the cysteine was synthesized from the enzyme. The cysteine synthase enzyme used H.sub.2S or sulfide during the enzymatic reaction to synthesize cysteine. No significant differences in H.sub.2S reduction (decrease) occurred regardless of whether PLP was present during the enzymatic reaction.
[0056] As shown in TABLE 1, each set of samples produced about the same amount of cysteine where the second set produced more cysteine than the first set. Samples 4 and 8, which did not have PLP, produced similar amounts of cysteine indicating that the addition of PLP is optional. The lack of PLP in samples 4 and 8 also indicates that the PLP is optional from the concentrations of H.sub.2S measured, which was the lowest amount of H2S as compared to the other samples 1-3 and 5-7.
[0057] Samples 1 and 5, the experiment blanks for each set that did not include the cysteine synthase enzyme, had high amounts (14.5 and 15 mg/L) of H.sub.2S as compared to at least a 50-60% decrease in H.sub.2S present in samples 2-4 and 6-8 treated with the cysteine synthase enzyme.
TABLE-US-00001 TABLE 1 Measured Amounts of Cysteine and Sulfide produced form Cysteine Synthase H.sub.2S conc Cysteine H.sub.2S conc Cysteine Condition Set 1 Synthesis Set 2 Synthesis Enzyme Blank 14.5 mg/L 0 15 mg/L 0 OAS + Pyridoxal 8.5 mg/L 0.223 6.5 mg/L 0.409 phosphate + enzyme OAS + Pyridoxal 7 mg/L 0.218 6 mg/L 0.387 phosphate + enzyme OAS + no pyridoxal 4.5 mg/L 0.228 5 mg/L 0.458 phosphate + enzyme
Example 2
[0058]
[0059] As noted from
Example 3
[0060]
[0061] Sample 1 included 5 mM O-Acetyl serine, 1 mM sulfide, 1 mM DTT, 0.25 mM PLP, and 100 mM Tris HCl buffer, pH 7.5; sample 1 did not include the cysteine synthase (OASS) enzyme. Sample 2 included the OASS cysteine synthase enzyme in an amount of 50 microliters l, 5 mM O-Acetyl serine, 1 mM sulfide, 1 mM DTT, 0.25 mM PLP, and 100 mM Tris HCl buffer, pH 7.5. Sample 3 included the cysteine synthase (OASS) enzyme in an amount of 50 microliters l, 5 mM O-Acetyl serine, 1 mM sulfide, and 100 mM Tris HCl buffer, pH 7.5; sample 3 did not include dithiothreitol (DTT), nor did sample 3 include PLP. Sample 4 included the cysteine synthase (OASS) enzyme in an amount of 50 microliters l, 5 mM O-Acetyl serine, 1 mM sulfide, 0.25 mM PLP, and 100 mM Tris HCl buffer, pH 7.5; sample 4 did not include DTT. Sample 5 included the cysteine synthase (OASS) enzyme in an amount of 50 microliters l, 5 mM O-Acetyl serine, 1 mM sulfide, and 100 mM Tris HCl buffer, pH 7.5; sample 5 did not include dithiothreitol (DTT), nor did sample 3 include PLP. Sample 6 included the cysteine synthase (OASS) enzyme in an amount of 50 microliters l, 5 mM O-Acetyl serine, 1 mM sulfide, and 100 mM Tris HCl buffer, pH 7.5; sample 6 did not include DTT, nor did sample 6 include PLP; however, sample 6 included 50% O-acetylserine OAS. Sample 7 was substantially similar to sample 6, except that sample 7 only included 25% OAS.
[0062] As noted from
Example 4
[0063]
[0064] Two bars are noted for sample 1 and sample 2; the bar on the left for each sample represents the amount of H.sub.2S as detected with a lower sensitivity probe, and the bar on the right for each sample represents the amount of H.sub.2S as detected with a higher sensitivity probe. As noted in
[0065] In the foregoing specification, the invention has been described with reference to specific embodiments thereof, and has been described as effective in providing methods, additive compositions, and fluid compositions for decreasing and/or removing hydrogen sulfide in downhole fluids circulated in a subterranean reservoir wellbore. However, it will be evident that various modifications and changes can be made thereto without departing from the broader spirit or scope of the invention as set forth in the appended claims. Accordingly, the specification is to be regarded in an illustrative rather than a restrictive sense. For example, specific base fluids, additional components, pyridoxal phosphates, and the like falling within the claimed parameters, but not specifically identified or tried in a particular composition or method, are expected to be within the scope of this invention.
[0066] The present invention may suitably comprise, consist or consist essentially of the elements disclosed and may be practiced in the absence of an element not disclosed. For instance, the additive composition for a base fluid, such as a drilling fluid, a completion fluid, a production fluid, a servicing fluid, an injection fluid, a refinery fluid, and combinations thereof may consist of or consist essentially of at least one cysteine synthase enzyme that is at least 75% homologous to the cDNA sequence of SEQ ID NO:1.
[0067] The fluid composition may consist of or consist essentially of a base fluid and at least one cysteine synthase enzyme that is at least 75% homologous to the cDNA sequence of SEQ ID NO:1; the base fluid may be or include, but is not limited to a drilling fluid, a completion fluid, a production fluid, a servicing fluid, an injection fluid, a refinery fluid, and combinations thereof.
[0068] The method may consist of or consist essentially of circulating a fluid composition into a subterranean reservoir wellbore; the fluid composition may have or include at least one cysteine synthase enzyme that is at least 75% homologous to the cDNA sequence of SEQ ID NO:1 in an effective concentration to decrease and/or remove hydrogen sulfide in downhole fluids.
[0069] The words comprising and comprises as used throughout the claims, are to be interpreted to mean including but not limited to and includes but not limited to, respectively.