Method for determining glycosylation and terminal modification of samples during protein purification process
09645156 ยท 2017-05-09
Assignee
Inventors
Cpc classification
G01N30/7233
PHYSICS
Y10T436/24
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
G01N2560/00
PHYSICS
International classification
Abstract
The present invention provides a method for determining glycosylation and terminal modifications of immunoglobulin during immunoglobulin purification process, which can simultaneously and rapidly determine glycosylation, N-terminal pyroglutamination and C-terminal de-lysination of immunoglobulin, including Step 1) separating immunoglobulin by using cation-exchange resin, and collecting different components in according to retention time; Step 2) denaturing the components of immunoglobulin obtained in step 1) with a denaturant, followed by reducing them with a reducing agent, to separate the light chain and heavy chain; Step 3) separating the light chain and heavy chain of immunoglobulin of step 2) by using reverse phase ultrahigh pressure liquid chromatography; Step 4) measuring the molecular weights of the light chain and heavy chain obtained in step 3) with mass spectrum; and Step 5) analyzing the chromatographic data obtained in step 3) and the mass spectrometric data obtained in step 4) to determine glycosylation and terminal modifications of the immunoglobulin.
Claims
1. A method for determining sample glycosylation and terminal modifications during purification process of immunoglobulin, consisting of the following steps of: Step 1) separating immunoglobulin by using cation-exchange chromatography, and collecting different components in accordance to retention time; Step 2) denaturing the components of immunoglobulin obtained in step 1) with a denaturant, followed by reducing the components with a reducing agent, to separate light chain and heavy chain of the immunoglobulin; Step 3) separating the light chain and the heavy chain of immunoglobulin of step 2) by using C4 reverse phase ultrahigh pressure liquid chromatography having a mobile phase X of 0.1% formic acid in water and mobile phase Y of 0.1% formic acid in acetonitrile to achieve a baseline separation of the light and the heavy chains; Step 4) measuring molecular weights of the light chain and the heavy chain obtained in step 3) with a mass spectrometer; and Step 5) analyzing chromatographic data obtained in step 3) and mass spectrometric data obtained in step 4) to determine glycosylation and terminal modifications of said immunoglobulin.
2. The method according to claim 1, wherein said step 1) comprises: using conventional strong cation-exchange chromatography column with 20 mM sodium phosphate buffer as loading buffer, 20 mM sodium phosphate and 1 M sodium chloride buffer of pH=6.0 as elution buffer, and monitoring eluting components by UV absorption at 280 nm.
3. The method according to claim 1, wherein said step 2) comprises: adding 10-30 L of 1-6 M guanidine hydrochloride aqueous solution a denaturant to a certain amount of immunoglobulin to denature the immunoglobulin, and after homogenously mixing, adding 1-4 L dithiothreitol (DTT) aqueous solution as a reducing agent to reduce the immunoglobulin, wherein a final concentration of DTT in a reaction solution is 25-100 mM, and a final concentration of immunoglobulin is 0.2-3 g/L.
4. The method according to claim 3, wherein in said step 2), the final DTT concentration is 50 mM.
5. The method according to claim 3, wherein in said step 2), a temperature for immunoglobulin denaturation and reduction is 50-65 C., and a reaction time is 45 min-120 min.
6. The method according to claim 5, wherein in said step 2), the temperature for immunoglobulin denaturation and reduction is 65 C., and the reaction time is 45 min.
7. The method according to claim 1, wherein said step 4) comprises determining the molecular weights of the light and heavy chain obtained in said step 3) using electrospray ionization mass spectrometry, wherein at 0-5 min, a flow path leads to waste, and at 5-16 min, the flow path leads to MS; and collecting mass spectrometry data in positive ion mode, wherein MS conditions are set as follows: cone gas flow is about 50.0 L/Hr, desolivation gas is about 800.0 L/Hr, desolvation temperature is about 500 C., cone voltage is 20-40V, scan range is about 400-2500 Da, and scan time is about 1 s.
8. The method according to claim 7, wherein the cone voltage is 25-30V.
9. The method according to claim 1, wherein said step 5) comprises calculating the proportion of N-terminal pyroglutamination of light chain of immunoglobulin from a chromatographic peak area obtained in step 3); and calculating relative contents of glycoforms and proportions of N-terminal pyroglutamination and C-terminal de-lysination of heavy chain of immunoglobulin from the mass spectrometric data obtained in step 4).
10. The method according to claim 1, wherein the immunoglobulin is human immunoglobulin.
11. The method according to claim 10, wherein the immunoglobulin is human immunoglobulin IgG1 and IgG2 subtypes.
12. The method according to claim 1, wherein the glycosylation and terminal modifications of the immunoglobulin include N-terminal pyroglutamination of light chain, and asparagine glycosylation, N-terminal pyroglutamination, and C-terminal de-lysination of heavy chain of the immunoglobulin.
Description
BRIEF DESCRIPTION OF DRAWINGS
(1) Hereinafter, the embodiments of the present inventions are described in details with reference to drawings, wherein:
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DETAILED EMBODIMENTS
(9) With reference to specific embodiments, the present invention will be described. The skilled persons in the art will understand that these embodiments are intended to illustrate the invention, without in any way limiting the scope of the present invention.
(10) In the following examples, antibody A is a chimeric antibody IgG1 (the specific preparations are described in Chinese patent: CN101177453B, specification pages 10-13, Examples 1-6, wherein the C2-11-12 chimeric antibody screened out in Example 6 on page 13 of the specification is the antibody A of the present invention); antibody B is a humanized antibody IgG1, (manufactured by Zhuhai Lizhu Mab Biotechnology Co., Ltd., the specific preparations are described in Chinese patent: CN102675460A, specification pages 12-18, Examples 1-7, wherein the AT-132 antibody screened out in Example 6 on pages 17-18 of the specification is the antibody B of the present invention); antibody C is a full length humanized IgG2, manufactured by Amgen Canada Inc.
(11) The experimental methods described in examples below, unless otherwise noted, are conventional methods. Medicinal materials and reagent materials used in the following examples, unless otherwise noted, are commercially available products.
EXAMPLE 1
Determination of Conditions for Immunoglobulin Reducing Method
(12) 1.1 Determination of the Amount of Reducing Agent DTT
(13) The effects of four different amounts of DTT on separation of the light and heavy chains were examined. 4 aliquots of 5 g antibody protein A were respectively added to 10 L 6 M guanidine hydrochloride solution, followed by the addition of 0.1 M DTT solution, 2 L and 5 L, and 0.5 M DTT solution, 2 L and 4 L, as well as appropriate amounts of 6 M guanidine hydrochloride solutions to make final DTT concentrations of 10 mM, 25 mM, 50 mM, and 100 mM, respectively. Then the resulting products were reacted with said IgG1 protein at 65 C. for 45 min.
(14) C4 reverse-phase high pressure liquid chromatography was used to separate the light and heavy chains obtained in the reactions, and the liquid phase system used was UPLC (Waters, ACQUITY). Column: Waters, ACQUITYUPLC column, BEH C4, 1.7 m (diameter), 300 (aperture), 2.150 mm. Chromatographic conditions were set as follows: the column temperature was set to 60 C., injection volume was 1 g; mobile phase X was 0.1% formic acid in water, mobile phase Y was 0.1% formic acid in acetonitrile and flow rate was 0.4 mL/min; gradient elution conditions were:
(15) TABLE-US-00002 Time (min) Mobile phase X Mobile Phase Y Flow rate (mL/min) 0 90 10 0.4 5 90 10 0.4 5.1 75 25 0.4 15 65 35 0.4 15.1 10 90 0.4 18 10 90 0.4 18.1 90 10 0.4 21 90 10 0.4
(16) Electrospray ionization mass spectrometry was used to determine the molecular weights of the light and the heavy chains separated by chromatography, wherein at 0-5 min, the flow path led to waste, at 5-16 min, the flow path led to MS, then mass spectrometry data were collected in a positive ion mode. The MS conditions were set as follows: cone gas flow was 50.0 L/Hr, desolvation gas was 800.0 L/Hr, desolvation temperature was 500 C., scan range was 400-2500 Da, scan time was 1 s, and sampling cone voltage was set to 25V.
(17) The results were shown in
(18) 1.2 Determination of Reduction Reaction Temperature and Time
(19) Several aliquots of 5 g antibody A were added to 10 L 6 M guanidine hydrochloride solution, followed by the addition of 0.5 M DTT solution 2 L and then an appropriate amount of 6 M guanidine hydrochloride solution, to make a final DTT concentration of 50 mM. Three reaction temperatures 37 C., 50 C., and 65 C. and reaction time between 20 min to 120 min were investigated for their effects on the light chain and heavy chain separation, and terminal modification of antibody IgG. Chromatography and mass spectrometry conditions were the same as described in Example 1.1.
(20) Experimental data were processed with Waters BiopharmaLynx 1.3 software. An Intact Protein mode was selected for performing deconvolution process, and the method parameters were as follows: Lock Mass (Da): 556.2771; TIC Threshold: 300-500: Deconvolution m/z Range: light chain 850-2000, heavy chain 950-1500; Protein MW Range: light chain 20000-30000 Da, heavy chain 42000-60000 Da. The proportions of each IgG antibody glycoform were obtained by normalizing the intensity of molecular weight peak of each glycoform in heavy chain mass spectrum. N-terminal pyroglutamic acid containing light chains and N-terminal pyroglutamic acid free light chains can achieve a baseline separation. Therefore, the proportion of light chain N-terminal pyroglutamination can be calculated from integrating the peak areas. The heavy chain N-pyroglutamination and de-lysination can be obtained by analyzing molecular weight of G0F heavy chain.
(21) Specific results were shown in
(22) TABLE-US-00003 TABLE 1 Comparison of antibody IgG1 terminal modifications under different DTT reduction temperature and time conditions DTT Reduction Modification proportion Conditions Pyroglutamina- Pyroglutamina- Temper- Time tion tion Delysination ature (min) (light chain) (heavy chain) (heavy chain) 37 C. 30 81.22 85.42 45 70.47 80.59 85.04 60 70.55 81.68 84.32 90 75.53 81.89 85.12 120 77.66 80.33 86.71 50 C. 30 71.38 81.87 84.39 45 77.13 83.10 86.60 60 78.75 82.31 87.13 90 80.62 81.39 87.45 120 80.67 79.78 88.45 65 C. 30 80.56 81.20 87.17 45 81.12 82.62 87.41 60 81.11 82.13 88.45 90 81.58 81.81 88.05 120 81.12 81.24 89.30
(23) In summary, the reduction reaction conditions were determined as: reacting at 50-65 C., reaction time between 45 min and 120 min.
(24) 1.3 Accuracy and Reproducibility of the Method
(25) Under the optimized experimental conditions (Several aliquots of 5 g antibody A were added to 10 L 6 M guanidine hydrochloride solution, followed by the addition of 0.5M DTT solution 2 L and an appropriate amount of 6 M guanidine hydrochloride, to make a final DTT concentration of 50 mM; reacting for 45 min at 65 C.), the accuracy and reproducibility of the method of the present invention in determining antibody A glycolsylation, N-terminal pyroglutamic acid cyclization and C-terminal de-lysination were evaluated. Chromatography and mass spectrometry conditions were the same as described in Example 1.1. Data processing procedure was the same as described in Example 1.2.
(26) Five continuous measurements were made, and the results were shown in Table 2. The measured results of the proportion of each IgG1 glycoform, and the proportions of N-terminal pyroglutamic acid cyclization and C-terminal de-lysination modification have a RSD % of less than 0.5%, the results of the contents of the glycoforms have a RSD % of less than 7%.
(27) Five parallel processing samples were measured, and the results are shown in Table 3. The measured results of the proportions of N-terminal pyroglutamic acid cyclization and C-terminal de-lysination modification have a RSD % of less than 1%, the results of the contents of the glycoforms have a RSD % of less than 7%.
(28) TABLE-US-00004 TABLE 2 Method Accuracy Measurement Terminal modification or Percentage (%) RSD glycoforms 1 2 3 4 5 Average (%) Light chain 83.51 83.55 83.49 83.59 83.58 83.54 0.05 glutamic acid G0F heavy 90.10 89.58 90.04 90.04 89.81 89.91 0.24 chain glutamic acid G0F heavy 87.95 88.17 88.15 88.43 87.99 88.14 0.22 chain de-lysine G0F 74.40 74.03 73.22 73.80 74.25 73.94 0.62 G1F 12.64 12.79 12.76 13.01 13.13 12.87 1.55 Man5 4.61 4.75 5.34 5.10 4.79 4.92 6.09 G0F-GN 4.10 4.15 4.40 3.98 3.85 4.10 5.02 G0 4.24 4.28 4.27 4.12 3.98 4.18 3.06
(29) TABLE-US-00005 TABLE 3 Method Reproducibility Measurement Terminal modification or Percentage (%) RSD glycoforms 1 2 3 4 5 Average (%) Light chain 83.51 83.55 83.49 83.59 83.58 83.54 0.05 glutamic acid G0F heavy 90.10 89.58 90.04 90.04 89.81 89.91 0.24 chain glutamic acid G0F heavy 87.95 88.17 88.15 88.43 87.99 88.14 0.22 chain de-lysine G0F 74.40 73.92 74.57 74.03 73.40 74.06 0.62 G1F 12.64 13.16 12.69 13.21 13.21 12.98 2.24 Man5 4.61 4.80 4.72 4.73 4.86 4.74 1.98 G0F-GN 4.10 3.87 4.06 4.09 4.07 4.04 2.36 G0 4.24 4.24 3.96 3.94 4.46 4.17 5.24
(30) In summary, the accuracy and reproducibility of the method are good.
(31) 1.4 Optimization of the Mobile Phase
(32) The impact of mobile phase elution gradients on the chromatographic separation of the light and heavy chains was evaluated based on reversed-phase ultrahigh pressure liquid chromatography. To prepare the sample, 5 g antibody A was added to 10 L 6 M guanidine hydrochloride solution, followed by the addition of 0.5 M DTT solution 2 L and finally an appropriate amount of 6 M guanidine hydrochloride solution, to make a final DTT concentration of 50 mM; reacting for 45 min at 65 C. The reaction products were separated with different mobile phase gradients, and other chromatographic and mass spectrum conditions were the same as Example 1.1. The mobile phase X was 0.1% formic acid in water, mobile phase Y was 0.1% formic acid in acetonitrile, and the flow rate was 0.4 mL/min. Four elution gradients were investigated, as follows:
(33) Gradient 1: 0-5 min, 10% Y; 5-5.1 min, 10%-18% Y; 5.1-15 min, 18%-28% Y; 15-15.1 min, 28%-90% Y; 15.1-19.0 min, 90% Y; 19.0-19.1 min, 90%-10% Y; 19.1-22.0 min, 10% Y.
(34) Gradient 2: 0-5 min, 10% Y; 5-5.1 min, 10%-25% Y; 5.1-8 min, 25%-27% Y; 8-18 min, 27%-30% Y; 18-18.1 min, 30%-90% Y; 18.1-21.0 min, 90% Y; 21.0-21.1 min, 90%-10% Y; 21.1-24.0 min, 10% Y.
(35) Gradient 3: 0-5 min, 10% Y; 5-5.1 min, 10%-25% Y; 5.1-8 min, 25%-26% Y; 8-18 min, 26%-28% Y; 18-18.1 min, 28%-90% Y; 18.1-21.0 min, 90% Y; 21.0-21.1 min, 90%-10% Y; 21.1-24.0 min, 10% Y.
(36) Gradient 4: 0-5 min, 10% Y; 5-5.1 min, 10%-25% Y; 5.1-6 min, 25%-26% Y; 6-10 min, 26%-27% Y; 10-15 min, 27%-32% Y; 15-15.1 min, 32%-90% Y; 15.1-18.0 min, 90% Y; 18-18.1 min, 90%-10% Y; 18.1-21.0 min, 10% Y.
(37) The chromatographic separation of light chain and heavy chains were shown in
(38) 1.5 Optimization of Mass Spectrum Conditions
(39) Based on the optimized mobile phase elution gradient (0-5 min, 10% Y; 5-5.1 min, 10%-25% Y; 5.1-6 min, 25%-26% Y; 6-10 min, 26%-27% Y; 10-15 min, 27%-32% Y; 15-15.1 min, 32%-90% Y; 15.1-18.0 min 90% Y: 18.0-18.1 min 90%-10% Y; 18.1-21.0 min 10% Y), the impacts of mass spectrum parameters on light and heavy chains MS signals after baseline separation were investigated. Cone gas flow, desolvation gas and desolvation temperature had little effects on MS signals, and generally use the parameters recommended by equipment suppliers. The method of the present invention optimized sampling cone voltage. To prepare the sample, 5 g antibody A was added to 10 L 6 M guanidine hydrochloride solution, followed by the addition of 0.5 M DTT solution 41 and finally an appropriate amount of 6 M guanidine hydrochloride solution, to make a final DTT concentration of 50 mM; reacting for 45 min at 65 C. The reaction products were separated under the chromatographic conditions of Example 1.1, and the mass spectrometry sampling cone voltage was set to 20V, 25V, 30V, and 40V and other mass spectrum conditions were the same as Example 1.1. As the voltage increases, the total ion flow (peak area) of the light and heavy chains has increased. As shown in
EXAMPLE 2
Determining the Glycosylation and Terminal Modification of Antibody A and Antibody B (IgG1) Using UPLC-MS Method of the Present Invention
(40) The glycosylation and terminal modification of antibody A and antibody B were analyzed using the optimized reduction conditions (5 g antibody A was added to 10 L 6 M guanidine hydrochloride solution, followed by the addition of 2 L 0.5 M DTT solution and finally an appropriate amount of 6 M guanidine hydrochloride solution, to make a final DTT concentration of 50 mM; reacted for 45 min at 65 C.), UPLC separation (the same as Example 1.1), ESI-MS detection (the same as Example 1.1), and normalized data processing (the same as Example 1.2). The first amino acids at N-terminal of light chain and heavy chains of antibody A were both glutamine (Gin), for which pyroglutamic acid cyclization occurs readily. The first amino acids at N-terminal of light chain antibody B was glutamic acid (Glu), for which pyroglutamic acid cyclization does not occur readily, but the heavy chain has glutamine, for which pyroglutamic acid cyclization occurs readily.
(41) TABLE-US-00006 TABLE 4 Theoretical molecular weights and measured molecular weights of heavy chain of antibody A with different types of glycoforms and terminal Theoretical Glycosylation and terminal molecular Actually measured modification weight molecular weight G0F, pyroglutamic acid, de-lysine 50542 50542 G0F, pyroglutamic acid, de-lysine, 50524 505023 dehydrate G0F, de-lysine 50559 50559 G0F, pyroglutamic acid 50670 50670 G1F, pyroglutamic acid, de-lysine 50704 50704 Man5, pyroglutamic acid, de-lysine 50314 50315 G0F-GN, pyroglutamic acid, 50338 50339 de-lysine G0, pyroglutamic acid, de-lysine 50395 50395
EXAMPLE 3
Determining the Glycosylation and Terminal Modification of Each Component of Antibody A after Purification Using UPLC-MS Method of the Present Invention
(42) In purification process of antibody A, a conventional strong cation-exchange chromatography was used, with 20 mM sodium phosphate buffer as loading buffer, 20 mM sodium phosphate and 1 M sodium chloride buffer (pH=6.0) as elution buffer, a flow rate of 200-400 cm/h. The eluting components were monitored by UV absorption at 280 nm. Then, the components of antibody A were collected in accordance with retention time: component 1 (4000-4300 min), component 2 (4300-4500 min), component 3 (4500-4650 min), component 4 (4650-4800 min), and component 5 (4800-5100 min). The glycosylation and terminal modifications of each component of the IgG1 were analyzed using the optimized reduction conditions (5 g antibody A was added to 10 L 6 M guanidine hydrochloride solution, followed by the addition of 2 L 0.5 M DTT solution and finally an appropriate amount of 6 M guanidine hydrochloride solution, to make a final DTT concentration of 50 mM, reacting for 45 min at 65 C.), UPLC separation (the same as Example 1.1), ESI-MS detection (the same as Example 1.1), and normalized data processing (the same as Example 1.2). And the results are shown in Table 5,
(43) TABLE-US-00007 TABLE 5 Detected results of glycosylation and terminal modifications for each purified component collected by cation-exchange resin Percentage (%) Terminal modifications or glycoforms 1 2 3 4 5 Light chain glutamic acid 95.36 75.88 57.89 59.14 48.16 G0F heavy chain glutamic acid 86.49 88.05 86.31 75.48 65.53 G0F heavy chain de-lysine 95.63 93.85 90.88 91.81 92.30 G0F 66.45 66.95 59.98 59.14 62.33 G1F 14.39 12.82 11.83 10.47 8.27 Man5 5.53 7.24 10.55 11.61 9.16 G0F-GN 6.90 6.88 10.09 11.49 14.11 G0 6.72 6.11 7.55 7.28 6.12
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(45) The results showed that, from component 1 to component 5, N-terminal pyroglutamination of light chain (from 95.36% to 48.16%) and pyroglutamination of heavy chain (from 86.49% to 65.53%) gradually decreased; the glycosylated portions, G1F decreased from 14.39% (component 1) to 8.27% (component 5), and Man5 and G0F-GN increased from 5.53% to 9.16%, and from 6.72% to 14.11%, respectively. Therefore, the method of present invention can be applicable to monitor the difference in the glycosylation and terminal modifications of samples during antibody purification process.
EXAMPLE 4
Determining Glycosylation and Terminal Modifications of Each Component of Antibody C (IgG2) Using UPLC-MS Method of the Present Invention
(46) The glycosylation and terminal modifications of antibody C were analyzed using the optimized reduction conditions (5 g antibody A was added to 10 L 6 M guanidine hydrochloride solution, followed by the addition of 2 L 0.5 M DTT solution and finally an appropriate amount of 6 M guanidine hydrochloride solution, to make a final DTT concentration of 50 mM; reacting for 45 min at 65 C.), UPLC separation (the same as Example 1.1), ESI-MS detection (the same as Example 1.1), and normalized data processing (the same as Example 1.2).
EXAMPLE 5
The Kit Method of the Present Invention to Determine Glycosylation and Terminal Modifications of Antibody A
(47) The kit was consisted of reagent A and reagent B, wherein the reagent A was 6 M guanidine hydrochloride solution; and reagent B was 0.5 M DTT solution.
(48) The method of using the kit to determine glycosylation and terminal modifications of antibody A specifically comprises:
(49) 20 g antibody A (the protein concentration should be greater than 1 g/L, and a ultrafiltration centrifuge tube with a cut-off molecular weight of 10 kDa can be used to concentrate if the concentration was less than 1 g/L) was add to a certain amount of regent A to a final solution volume of 36 L, followed by adding 4 L reagent B, reacting for 45 min at 65 C. The reaction products were separated by UPLC (the same as Example 1.1), detected by ESI-MS (the same as Example 1.1), and the data were nonnalizedly processed (the same as Example 1.2), to analyze the glycosylation and terminal modifications of antibody A. The experiments were repeated for 5 days in succession (the samples were reprepared and determined).
(50) The results showed that the light chain and heavy chain of antibody A were effectively separated, and achieved a baseline separation on chromatogram. As shown in Table 6, determined for 5 days in succession, the relative standard deviations RSD % of the measured values for light chain N-terminal pyroglutamination, heavy chain N-terminal pyroglutamination and C-terminal de-lysination were less than 2%. The relative standard deviations RSD % of the measured values for glycochains G0F, G1F, and G0 were less than 5%, and for Man5 and G0F-GN, they were less than 10%. In conclusion, the method of the present invention can achieve a standardized operation with good reproducibility, and can be used to establish a kit method for determining immunoglobulin glycosylation and terminal modifications.
(51) TABLE-US-00008 TABLE 6 The reproducibility for applying the present method in determining terminal modifications of antibody A Terminal Modification ratio (%) RSD modifications Day 1 Day 2 Day 3 Day 4 Day 5 Average (%) Light chain 86.20 84.80 84.34 83.48 84.93 84.75 1.17 pyroglutamination G0F heavy chain 89.95 87.48 89.87 89.66 90.48 89.49 1.30 pyroglutamination G0F heavy chain 89.08 92.69 89.97 90.48 93.01 91.05 1.69 de-lysination
(52) The above description of specific embodiments of the present invention does not limit the present invention, various changes and modification may be made by one skilled in the art without departing from the spirit of the present invention, and shall fall within the scope of the appended claims of the invention.