Mutant human and simian immunodeficiency virus ENV proteins with reduced immunosuppressive properties
09636396 ยท 2017-05-02
Assignee
- Centre National De La Recherche Scientifique (Paris, FR)
- UNIVERSITE PARIS-SUD XI (Orsay, FR)
- INSITUT GUSTAVE ROUSSY (Villejuif, FR)
- VIROXIS S.A.S. (Paris, FR)
Inventors
Cpc classification
C12N2740/16022
CHEMISTRY; METALLURGY
C12N2740/16034
CHEMISTRY; METALLURGY
A61K39/21
HUMAN NECESSITIES
C12N2740/15033
CHEMISTRY; METALLURGY
C12N2740/15034
CHEMISTRY; METALLURGY
C12N2740/16122
CHEMISTRY; METALLURGY
C12N2740/16134
CHEMISTRY; METALLURGY
C07K14/162
CHEMISTRY; METALLURGY
International classification
A61K39/21
HUMAN NECESSITIES
Abstract
A pharmaceutical composition includes, as active substance a mutated lentiviral ENV protein, substantially devoid of immunosuppressive properties or a variant of the mutated lentiviral ENV protein or a fragment of the above proteins, in association with a pharmaceutically acceptable carrier.
Claims
1. A pharmaceutical composition comprising as active substance: a) an isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to a corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein resulting from mutation of the transmembrane (TM) subunit of the corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00056 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQ ID NO: 416) wherein, X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is any amino acid, X.sub.a is any amino acid, and X.sub.b is R, or X.sub.a is A, F, G, L, R, and X.sub.b is R, or b) at least one fragment of said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the corresponding wild type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said fragment comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00057 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQ ID NO: 416) wherein, X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is any amino acid, X.sub.a is any amino acid, and X.sub.b is R, or X.sub.a is A, F, G, L, R, and X.sub.b is R, in association with a pharmaceutically acceptable carrier, said absence or reduction of immunosuppressive activity of the above mentioned mutated human or simian lentiviral ENV protein or of the above defined fragment being liable to be assessed by the fact that in an in vivo assay involving engrafted tumor cells rejection, said tumor cells being transduced either so as to express said mutated ENV protein or said fragment (mutated ENV tumor cells), or said tumor cells being transduced so as to express the corresponding wild type non-mutated ENV protein or a fragment thereof (wild type ENV tumor cells), or said tumor cells being not transduced (normal tumor cells), the following ratio: immunosuppression index of said mutated ENV protein or of said fragment (i.sub.mutated env)/immunosuppression index of wild type ENV protein (i.sub.wild type env) is less than 0.5, i.sub.mutated env being defined by: (maximum area reached by mutated ENV tumor cellsmaximum area reached by normal tumor cells)/(maximum area reached by normal tumor cells), and i.sub.wild type env being defined by: (maximum area reached by wild type ENV tumor cellsmaximum area reached by normal tumor cells)/(maximum area reached by normal tumor cells).
2. The pharmaceutical composition according to claim 1 comprising as active substance: a) an isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein resulting from mutation of the transmembrane (TM) subunit of the corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00058 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQ ID NO: 416) wherein, X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is L, I, V, M or P, X.sub.a is Y, I, H, C or T, and X.sub.b is R, or X.sub.a is A, F, G, L or R, and X.sub.b is R, or b) at least one fragment of said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the corresponding wild type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said fragment comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00059 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQIDNO:416) wherein, X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is L, I, V, M or P, X.sub.a is Y, I, H, C or T, and X.sub.b is R, or X.sub.a is A, F, G, L or R, and X.sub.b is R, in association with a pharmaceutically acceptable carrier.
3. The pharmaceutical composition according to claim 1 comprising as active substance: a) an isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein resulting from mutation of the transmembrane (TM) subunit of the corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00060 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQIDNO:416) wherein X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is L, X.sub.a is Y, and X.sub.b is R, or X.sub.a is A, F, G, L, or R, and X.sub.b is R, or b) at least one fragment of said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the corresponding wild type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said fragment comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00061 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQIDNO:416) wherein X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is L, X.sub.a is Y, and X.sub.b is R, or X.sub.a is A, F, G, L, or R, and X.sub.b is R, in association with a pharmaceutically acceptable carrier.
4. The pharmaceutical composition according to claim 1 comprising as active substance: a) an isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein resulting from mutation of the transmembrane (TM) subunit of the corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00062 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQIDNO:416) wherein X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is L, or X.sub.a is Y, and X.sub.b is R, or b) at least one fragment of said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the corresponding wild type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said fragment comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00063 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQIDNO:416) wherein X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is L, or X.sub.a is Y, and X.sub.b is R, in association with a pharmaceutically acceptable carrier.
5. The pharmaceutical composition according to claim 1 comprising as active substance: a) an isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein resulting from mutation of the transmembrane (TM) subunit of the corresponding wild type non-mutated human or simian lentiviral ENV protein, said mutated human or simian lentiviral ENV protein comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q (SEQ ID NO: 416), wherein, X represents any amino acid, and either X.sub.a is A, G or R, and X.sub.b is L, or X.sub.a is Y, and X.sub.b is R, or b) at least one fragment of said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the corresponding wild type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said fragment comprising a mutated immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00064 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQIDNO:416) wherein, X represents any amino acid, and either X.sub.a is A, G or R, and X.sub.b is L, or X.sub.a is Y, and X.sub.b is R, in association with a pharmaceutically acceptable carrier.
6. The pharmaceutical composition according to claim 1, wherein X.sub.a is R, and X.sub.b is L, or X.sub.a is Y, and X.sub.b is R.
7. The pharmaceutical composition according to claim 1, wherein said isolated mutated human or simian lentiviral ENV protein or said fragment of said isolated mutated human or simian lentiviral ENV protein comprises one of the following amino acid sequences TABLE-US-00065 A-I-E-K-X.sub.a-X.sub.b-X-DQ (SEQIDNO:422), A-I-E-R-X.sub.a-X.sub.b-X-DQ (SEQIDNO:423), A-V-E-K-X.sub.a-X.sub.b-X-DQ (SEQIDNO:424), A-V-E-R-X.sub.a-X.sub.b-X-DQ (SEQIDNO:425).
8. The pharmaceutical composition according to claim 1, wherein said isolated mutated human or simian lentiviral ENV protein or said fragment of said isolated mutated human or simian lentiviral ENV protein comprises one of the amino acid sequences: SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 17, SEQ ID NO: 25, SEQ ID NO: 29, SEQ ID NO: 33, SEQ ID NO: 37, SEQ ID NO: 38, SEQ ID NO: 39, SEQ ID NO: 40, SEQ ID NO: 41, SEQ ID NO: 42, SEQ ID NO: 46, SEQ ID NO: 50, SEQ ID NO: 54, SEQ ID NO: 58, SEQ ID NO: 62, SEQ ID NO: 66, SEQ ID NO: 67, SEQ ID NO: 68, SEQ ID NO: 69, SEQ ID NO: 70, SEQ ID NO: 71, SEQ ID NO: 75, SEQ ID NO: 79, SEQ ID NO: 83, SEQ ID NO: 87, SEQ ID NO: 91, and SEQ ID NO:95.
9. The pharmaceutical composition according to claim 1, wherein said isolated mutated human or simian lentiviral ENV protein or said fragment of said isolated mutated human or simian lentiviral ENV protein comprises one of the amino acid sequences: SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 17, SEQ ID NO: 38, SEQ ID NO: 39, SEQ ID NO: 40, SEQ ID NO: 41, SEQ ID NO: 42, SEQ ID NO: 46, SEQ ID NO: 67, SEQ ID NO: 68, SEQ ID NO: 69, SEQ ID NO: 70, SEQ ID NO: 71 and SEQ ID NO: 75.
10. The pharmaceutical composition according to claim 1, wherein said isolated mutated human or simian lentiviral ENV protein or said fragment of said isolated mutated human or simian lentiviral ENV protein comprises one of the amino acid sequences: SEQ ID NO: 96, SEQ ID NO: 97, SEQ ID NO: 98, SEQ ID NO: 99, SEQ ID NO: 100, SEQ ID NO: 104, SEQ ID NO: 108, SEQ ID NO: 112, SEQ ID NO: 116, SEQ ID NO: 120, SEQ ID NO: 124, SEQ ID NO: 125, SEQ ID NO: 126, SEQ ID NO: 127, SEQ ID NO: 128, SEQ ID NO: 129, SEQ ID NO: 133, SEQ ID NO: 137, SEQ ID NO: 141, SEQ ID NO: 145, SEQ ID NO: 149, SEQ ID NO: 153, SEQ ID NO: 154, SEQ ID NO: 155, SEQ ID NO: 156, SEQ ID NO: 157, SEQ ID NO: 158, SEQ ID NO: 162, SEQ ID NO: 166, SEQ ID NO: 170, SEQ ID NO: 174, SEQ ID NO: 178, SEQ ID NO: 182, SEQ ID NO: 183, SEQ ID NO: 184, SEQ ID NO: 185, SEQ ID NO: 186, SEQ ID NO: 187, SEQ ID NO: 191, SEQ ID NO: 195, SEQ ID NO: 199, SEQ ID NO: 203, SEQ ID NO:207 and SEQ ID NO: 211.
11. The pharmaceutical composition according to claim 1, wherein said isolated mutated human or simian lentiviral ENV protein or said fragment of said isolated mutated human or simian lentiviral ENV protein comprises one of the amino acid sequences: SEQ ID NO: 96, SEQ ID NO: 97, SEQ ID NO: 98, SEQ ID NO: 99, SEQ ID NO: 100, SEQ ID NO: 104, SEQ ID NO: 125, SEQ ID NO: 126, SEQ ID NO: 127, SEQ ID NO: 128, SEQ ID NO: 129, SEQ ID NO: 133, SEQ ID NO: 154, SEQ ID NO: 155, SEQ ID NO: 156, SEQ ID NO: 157, SEQ ID NO: 158, SEQ ID NO: 162, SEQ ID NO: 183, SEQ ID NO: 184, SEQ ID NO: 185, SEQ ID NO: 186, SEQ ID NO: 187, SEQ ID NO: 191.
12. The pharmaceutical composition according to claim 1, wherein said isolated mutated human or simian lentiviral ENV protein consists of one of the amino acid sequences: SEQ ID NO: 212, SEQ ID NO: 213, SEQ ID NO: 214, SEQ ID NO: 215, SEQ ID NO: 216, SEQ ID NO: 220, SEQ ID NO: 224, SEQ ID NO: 228, SEQ ID NO: 232, SEQ ID NO: 236, SEQ ID NO: 240, SEQ ID NO: 241, SEQ ID NO: 242, SEQ ID NO: 243, SEQ ID NO: 244, SEQ ID NO: 245, SEQ ID NO: 249, SEQ ID NO: 253, SEQ ID NO: 257, SEQ ID NO: 261, SEQ ID NO: 265, SEQ ID NO: 269, SEQ ID NO: 420 and SEQ ID NO: 421.
13. The pharmaceutical composition according to claim 1, wherein said isolated mutated human or simian lentiviral ENV protein consists of one of the amino acid sequences: SEQ ID NO: 212, SEQ ID NO: 213, SEQ ID NO: 214, SEQ ID NO: 215, SEQ ID NO: 216, SEQ ID NO: 220, SEQ ID NO: 241, SEQ ID NO: 242, SEQ ID NO: 243, SEQ ID NO: 244, SEQ ID NO: 245, SEQ ID NO: 249, SEQ ID NO: 420 and SEQ ID NO: 421.
14. The pharmaceutical composition according to claim 1, wherein said mutated protein consists of one of the amino acid sequences of the group consisting of SEQ ID NO: 271 to 283.
15. The pharmaceutical composition according to claim 1, in association with at least one antiviral compound, preferably for a simultaneous, separated or sequential use.
16. The pharmaceutical composition according to claim 1, for its use for stimulating an immune response in a host organism.
17. A method to obtain the active substance of a pharmaceutical composition, as defined in claim 1, consisting of modifying the immunosuppressive property of: a wild-type non-mutated human or simian lentiviral ENV protein, or a fragment of said wild-type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said wild-type non-mutated human or simian lentiviral ENV protein or fragment thereof presenting a transmembrane subunit (TM) comprising an immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00066 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQ ID NO: 427) wherein X represents any amino acid, X.sub.a is C, D, E, H, I, K, M, N, P, Q, S, T, V, W or Y, and X.sub.b is C, D, E, H, I, K, L, M, N, P, Q, S, T, V, W or Y, said method comprising a step of introduction of at least one mutation of X.sub.a and/or X.sub.br to obtain: an isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the wild type non-mutated human or simian lentiviral ENV protein, or a fragment of said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the wild type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said isolated mutated human or simian lentiviral ENV protein and fragment thereof comprising a mutated immunosuppressive domain (ISU) containing the following amino sequence: TABLE-US-00067 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQ ID NO: 416) wherein X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is any amino acid, X.sub.a is any amino acid, and X.sub.b is R, or X.sub.a is A, F, G, L or R, and X.sub.b is R, said substantial absence or reduction of immunosuppressive activity of the above mentioned mutated human or simian lentiviral ENV protein or of the above defined fragment being liable to be assessed by the fact that in an in vivo assay involving engrafted tumor cells rejection, said tumor cells being transduced either so as to express said mutated ENV protein or said fragment (mutated ENV tumor cells), or said tumor cells being transduced so as to express the corresponding wild type non-mutated ENV protein or a fragment thereof (wild type ENV tumor cells), or said tumor cells being not transduced (normal tumor cells), the following ratio: immunosuppression index of said mutated ENV protein or of said fragment (i.sub.mutated env)/immunosuppression index of wild type ENV protein (i.sub.wild type env) is less than 0.5, i.sub.mutated env being defined by: (maximum area reached by mutated ENV tumor cellsmaximum area reached by normal tumor cells)/(maximum area reached by normal tumor cells), and i.sub.wild type env being defined by: (maximum area reached by wild type ENV tumor cellsmaximum area reached by normal tumor cells)/(maximum area reached by normal tumor cells).
18. A method to obtain the active substance of a pharmaceutical composition, as defined in claim 1, consisting of modifying the immunosuppressive property of: a wild-type non-mutated human or simian lentiviral ENV protein, or a fragment of said wild-type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said wild-type non-mutated human or simian lentiviral ENV protein or fragment thereof presenting a transmembrane subunit (TM) comprising an immunosuppressive domain (ISU) containing the following amino acid sequence: TABLE-US-00068 A-[I/V]-E-[K/R]-Y-L-X-D-Q, (SEQ ID NO: 1) wherein X represents any amino acid, said method comprising a step of introduction of at least one mutation of Y in position 5 and/or L in position 6, to obtain: an isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the wild type non-mutated human or simian lentiviral ENV protein, or a fragment of said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the wild type sequence, said fragment comprising at least 40 amino acids, said isolated mutated human or simian lentiviral ENV protein and fragment thereof comprising a mutated immunosuppressive domain (ISU) containing the following amino sequence: TABLE-US-00069 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQ ID NO: 416) wherein X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is L, I, V, M or P, X.sub.a is Y, I, H, C or T, and X.sub.b is R, or X.sub.a is A, F, G, L or R, and X.sub.b is R.
19. A method to obtain the active substance of a pharmaceutical composition, as defined in claim 1, wherein said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the wild type non-mutated human or simian lentiviral ENV protein, or a fragment of said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the wild type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said isolated mutated human or simian lentiviral ENV protein and fragment thereof comprising a mutated immunosuppressive domain (ISU) containing the following amino sequence: TABLE-US-00070 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQ ID NO: 416) wherein X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is L, X.sub.a is Y, and X.sub.b is R, or X.sub.a is A, F, G, L or R, and X.sub.b is R.
20. A method to obtain the active substance of a pharmaceutical composition, as defined in claim 1, wherein said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the wild type non-mutated human or simian lentiviral ENV protein, or a fragment of said isolated mutated human or simian lentiviral ENV protein having no or a reduced immunosuppressive activity as compared to the wild type non-mutated human or simian lentiviral ENV protein, said fragment comprising at least 40 amino acids, said isolated mutated human or simian lentiviral ENV protein and fragment thereof comprising a mutated immunosuppressive domain (ISU) containing the following amino sequence: TABLE-US-00071 A-[I/V]-E-[K/R]-X.sub.a-X.sub.b-X-D-Q, (SEQ ID NO: 416) wherein X represents any amino acid, and either X.sub.a is A, F, G, L or R, and X.sub.b is L, or X.sub.a is Y, and X.sub.b is R.
21. The pharmaceutical composition according to claim 1, wherein said isolated mutated human lentiviral ENV protein or said fragment of said isolated mutated human lentiviral ENV protein has no or a reduced immunosuppressive activity as compared to a wild type non-mutated HIV-1 ENV protein consisting of the amino acid sequence SEQ ID NO: 417.
22. The pharmaceutical composition according to claim 1, wherein said isolated mutated human lentiviral ENV protein or said fragment of said isolated mutated human lentiviral ENV protein has no or a reduced immunosuppressive activity as compared to a wild type non-mutated HIV-2 ENV protein consisting of the amino acid sequence SEQ ID NO: 418.
23. The pharmaceutical composition according to claim 1, wherein said isolated mutated simian lentiviral ENV protein or said fragment of said isolated mutated simian lentiviral ENV protein has no or a reduced immunosuppressive activity as compared to a wild type non-mutated SIV ENV protein consisting of the amino acid sequence SEQ ID NO: 419.
24. The pharmaceutical composition according to claim 1, wherein said isolated mutated human lentiviral ENV protein or said fragment of said isolated mutated human lentiviral ENV protein has no or a reduced immunosuppressive activity as compared to a HIV-1 ENV protein comprising a wild type non-mutated immunosuppressive domain selected from the group consisting of: SEQ ID NO: 366, SEQ ID NO: 367, SEQ ID NO: 368, SEQ ID NO: 369, SEQ ID NO: 370 and SEQ ID NO: 371.
25. The pharmaceutical composition according to claim 1, wherein said isolated mutated human lentiviral ENV protein or said fragment of said isolated mutated human lentiviral ENV protein has no or a reduced immunosuppressive activity as compared to a HIV-2 ENV protein comprising a wild type non-mutated immunosuppressive domain selected from the group consisting of: SEQ ID NO: 376 and SEQ ID NO: 377.
26. The pharmaceutical composition according to claim 1, wherein said isolated mutated simian lentiviral ENV protein or said fragment of said isolated mutated simian lentiviral ENV protein has no or a reduced immunosuppressive activity as compared to a SIV ENV protein comprising a wild type non-mutated immunosuppressive domain selected from the group consisting of: SEQ ID NO: 372, SEQ ID NO: 373, SEQ ID NO: 374 and SEQ ID NO: 375.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1)
(2) Amino acid sequences of the HIV ectodomain deletants, with the indicated length, and of single mutant (substitution are underlined) ectodomains.
(3)
(4) Functional delineation of the immunosuppressive domain of the HIV envelope. The immunosuppressive activity of 115 aa-long and truncated HIV envelope ectodomains (see structures on the left) was tested using the MCA205 tumor rejection in vivo assay. Immunosuppression indexes are given as histograms on the right (mean values+/SD).
(5)
(6) Functional identification of the aminoacid in the HIV envelope ectodomain directly involved in immunosuppressive activity, and search for aminoacid substitutions inhibiting this activity. Immunosuppresive activity was tested in vivo as in
(7)
(8) Expression profile of mutated HIV envelopes using full-length HIV env-expressing vectors and an anti-SU HIV env(110H) monoclonal antibody (FACS). The data are expressed as percentages of the control HIV env WT.
(9)
(10) Infectivity of HIV env-pseudotyped viral particles showing functionality of the full-length WT and of specifically mutated HIV envelopes. The results are expressed as viral titers (number of infected target cells/mL of virus supematant).
(11)
(12) Functional identification of the amino acid in the SIV envelope ectodomain directly involved in immunosuppressive activity, and search for aminoacid substitutions inhibiting this activity. Immunosuppressive activity was tested using the in vivo MCA205 tumor rejection assay. Immunosuppression indexes are represented as histograms (mean values+/SD).
DETAILED DESCRIPTION OF THE INVENTION
Example
(13) Immunosuppressive domains have been identified on the envelope proteins of oncoretroviruses, of either the gamma-(murine MLV) or the delta (e.g. human HTLV) type, as well as of some endogenous retroviruses (e.g. HERV-FRD). These domains have a highly conserved crystallographic structure, although their primary sequences are quite diverse, and an amino-acid (either Q, E, or K) at a definite position has previously been demonstrated to be essential for the immunosuppresive activity of the corresponding envelope protein. Mutation of this amino acid to an Arginine (R) was further demonstrated to result in inhibition of the immunosuppressive activity of the mutated envelope protein, with in some cases complete conservation of the other functional properties of the envelope protein, including its ability to be normally expressed at the cell membrane, to be captured by a nascent retroviral particle, and finally to confer infectivity of the mutant virus in vitro. Such mutants allowed an unambiguous demonstration of the essential role of the immunosuppressive activity for viremia in vivo, with the mutant IS-virus being unable to escape the host immune system and propagate in an immunocompetent animal [Schlecht-Louf et al., Proc Natl Acad Sci USA. 2010; 107(8): 3782-7].
(14) On the basis of the identification of an IS domain and on the ability of the IS function to be inhibited by specific mutations within the IS domain that do not disrupt the antigenic structure of the corresponding viral protein, vaccinal approaches are being developed with vaccines containing mutated optimized
IS-negative viral antigens, which demonstrate an increased immunognicity as compared to those using the native viral antigens. Search for similar IS domains and appropriate mutations in the case of non-oncogenicbut still pathogenic-retroviruses such as HIV is therefore of interest to tentatively develop improved vaccines.
(15) Actually, in the case of the other major class of retroviruses, namely the lentiviruses (among which the human HIV1 and HIV2, and the SIV simian homologues), the crystallographic structure of the envelope protein discloses some similarities but also very important differences, especially in the domain corresponding to the IS domain of oncoretroviruses, with evidence in HIV and SIV for a severely extended helix-loop-helix domain, and no evidence for sequence similarities with the IS domain of oncoretroviruses.
(16) Furthermore, an IS domain with strong amino-acid similarities with the IS domain of oncoretroviruses was identified within an accessory protein of HIV and SIV, namely within the Nef protein. This protein is specifically produced by these complex retroviruses and is not encoded by oncoretroviruses. The Nef protein is essential for viremia in vivo, and it possesses several domains responsible for immune escape, among which the identified IS domain, thus strongly suggesting that lentiviruses had transferred the immunosuppressive activity found in oncoretroviruses within their envelope protein, to the accessory Nef protein. In agreement with this hypothesis, Nef-deleted or Nef-mutated retroviruses have a severely attenuated pathogenicity in in vivo macaque animal models.
(17) Here, the Inventors report on the identification of an IS activity carried by the HIV and SIV envelope proteins, and on specific mutations that inhibit this activity without major disrupt ion of the overall structure of the corresponding envelope proteins.
(18) Results
(19) Delination of the Immunosuppressive Domain of the HIV Envelope
(20) Delineation of the immunosuppressive domain of the HIV envelope was achieved using an in vivo tumor rejection assay, that the Inventors had previously used to demonstrate the immunosuppressive activity of the Env protein of oncoretroviruses (murine MoMLV and simian MPMV). The rationale of the assay can be summarized as follows: while injection of MCA205 tumor cells (H-2.sup.b) into allogeneic Balb/c mice (H-2.sup.d) leads to the formation of no tumor or transient tumors that are rapidly rejected, injection of the same cells, but stably expressing an immunosuppressive retroviral Env protein, leads to the growth of larger tumors that persist for a longer timein spite of the expression of the new exogenous antigen. This difference is not associated with a difference in intrinsic cell growth rate since it is not observed in syngeneic C57BL/6 mice, and is immune system-dependent. The extent of immunosuppression can be quantified by an index based on tumor size: (A.sub.env-A.sub.none)/A.sub.none, where A.sub.env and A.sub.none are the mean areas at the peak of growth of tumors from Balb/c mice injected with env-expressing or control cells, respectively. A positive index indicates that env expression facilitates tumor growth, as a consequence of its immunosuppressive activity; a null or negative index points to no effect or even an inhibitory effect, respectively. The latter may be explained by a stimulation of the immune response of the host against the new foreign antigen, represented by a non-immunosuppressive Env protein, expressed at the surface of tumor cells.
(21) To first delineate a minimal immunosuppressive domain (ISD) active in vivo, the Inventors analyzed the effect of a series of truncations/deletions within the HIV env gene. Assay of the series of C-term truncations in
(22) Mutations at Position 41
(23) The Inventors then checked that the Y41R substitution did not alter the overall capacity of the HIV envelope to be expressed by an eucaryotic cell and to be exported at the cell membrane, by introducing the Y41R substitution into an expression vector for the HIV envelope. A FACS analysis of cell transfected with both the wild-type and the Y41R mutant using an anti-SU specific monoclonal antibody actually demonstrated quantitative expression of the mutant envelope at the cell surface, thus indicating that the Y41R mutation does not significantly alter the HIV Env structure and SU-TM interaction (
(24) A series of distinct substitutions at the Y41 position were finally performed to tentatively identify whether other amino acids could be substituted to generate IS-negative variants: the amino acid assayed included the positively charged K and H (in addition to R), the small A and G, and the hydrophobic L and F residues. Again it was checked that these substitutions did not alter the overall structure of the HIV Env with the corresponding mutations.
(25) Among them, substitution of Y41 by A, G, L and F resulted in loss of IS (
(26) Further Mutation Outside of the ISU Domain
(27) The effects of a set of second mutations at positions that are structurally close to Y41 position within the ENV ectodomain three-dimensional structure were also tested. Two of them (Y41R-K72A and Y41R-K78G) maintain a high level expression at cell membrane and confer infectivity (
(28) Mutations at Position 42
(29) Interestingly, the adjacent position to the position Y41, position L42, also resulted in loss of IS activity of the mutant peptide when the mutation L42R is introduced. This mutation maintains a high level expression at cell membrane of the mutated HIV ENV protein (
(30) Mutations within the SIV ENV Protein
(31) Interestingly, mutation at the homologous position in SIV ENV (L42) of the position L42 in HIV-1 ENV ectodoamin also resulted in specific loss of IS activities (
(32) Accordingly, the present investigation has clearly identified a definite location and a definite substitution(s) within the HIV env resulting in the loss of its IS activity. Being compatible with the conservation of the overall structure of the human and simian lentiviral Env proteins, these substitutions should be introduced in all pharmaceutical preparations which include the Env protein as a vaccine antigen.
(33) Materials and Methods
(34) Mice and cell lines: C57Bl/6 and Balb/c mice, 6-10 weeks old, were obtained from CER Janvier (Laval, France). Mice were maintained in the animal facility of the Gustave Roussy Institute in accordance with institutional regulations. 293T (ATCC CRL11268), and MCA205 cells were cultured in DMEM supplemented with 10% fetal calf serum (Invitrogen), streptomycin (100 g/ml) and penicillin (100 units/ml).
(35) Plasmid Construction:
(36) The PCEL/E160 encoding the envelope protein of the BRU/LAI HIV-1 isolate is a gift from Dr Marc Sitbon. To generate the pDFG plasmids encoding the various fragments of HIV-1 envelope ectodomain, PCR fragments generated using PCEL/E160 as a template and primer pairs 1-2 (pDFG-HIV115), 1-3 (pDFG-HIV81), 1-4 (pDFG-HIV67), 1-5 (pDFG-HIV55), 1-6 (pDFG-HIV49), 1-7 (pDFG-HIV43), 1-8 (pDFG-HIV37), 1-9 (pDFG-HIV30) were digested with SfiI and MluI and inserted into pDFG-ectoSyncytin-1 (Mangeney et al, 2007) opened with the same enzymes.
(37) Mutated pDFG-HIV115 were obtained by successive PCR using appropriate primers. A first series of PCR was performed with pDFG HIV115 as template using primers 1-11 and 10-2, 1-13 and 12-2, 1-15 and 14-2 or 1-17 and 16-2 to introduce the E39R, Y41R, K43R or D44R mutations respectively, and primers 1-18 and 19-2, 1-20 and 21-2, 1-22 and 23-2, 1-24 and 25-2, 1-26 and 27-2, 1-28 and 29-2, 1-30 and 31-2, 1-32 and 33-2, 1-34 and 35-2, or 1-36 and 37-2 to introduce the L36R, A37R, V38R, L42R, Q45R, Q46R, L47R, L48R, G49R, or I50R mutations respectively. The PCR products were then used as templates in subsequent PCR using primers 1-2. These PCR fragments were digested with SfiI and MluI and inserted into pDFG-ectoSyncytin-1 (Mangeney et al, 2007) opened with the same enzymes.
(38) All the constructions were sequenced before use.
(39) TABLE-US-00051 TABLE 1 Primer list N.sup.o Name Primer sequence (5-3) SEQ ID 1 TM HIV Sfi-Sens ACATggcccagccggccTCTGGTATAGTGCAGCAGC SEQ ID NO: 295 2 TM HIV115 Mlu-AS GTATacgcgtTTATAATTCTTGTTCATTCTTTTC SEQ ID NO: 296 3 TM HIV81 Mlu AS GTATacgcgtTTACATGTTATTCCAAATCTGTTCC SEQ ID NO: 297 4 TM HIV67 Mlu AS GTATacgcgtTTAAGCATTCCAAGGCACAGC SEQ ID NO: 298 5 TM HIV55 Mlu AS GTATacgcgtTTATCCAGAGCAACCCCAAATCC SEQ ID NO: 299 6 TMHIV49 Mlu AS GTATacgcgtTTACCCCAGGAGCTGTTGATCC SEQ ID NO: 300 7 TMHIV43 Mlu AS GTATacgcgtTTACTTTAGGTATCTTTCCACAGC SEQ ID NO: 301 8 TMHIV37 Mlu AS GTATacgcgtTTAAGCCAGGATTCTTGCCTGGAG SEQ ID NO: 302 9 TMHIV30 Mlu AS GTATacgcgtTTACTGCTTGATGCCCCAGAC SEQ ID NO: 303 18 TMHIV115 L36R as CTTTCCACAGCCcGGATTCTTGCCTG SEQ ID NO: 304 19 TMHIV115 L36R s CAGGCAAGAATCCgGGCTGTGGAAAG SEQ ID NO: 305 20 TMHIV115 A37R as GTATCTTTCCACAcgCAGGATTCTTGCC SEQ ID NO: 306 21 TMHIV115 A37R s GGCAAGAATCCTGcgTGTGGAAAGATAC SEQ ID NO: 307 22 TMHIV115 V38R as CTTTAGGTATCTTTCCctAGCCAGGATTCTTGCC SEQ ID NO: 308 23 TMHIV115 V38R s GGCAAGAATCCTGGCTagGGAAAGATACCTAAAG SEQ ID NO: 309 11 TMHIV115 E39R AS CCTTTAGGTATCTTctCACAGCCAGGATTC SEQ ID NO: 310 10 TMHIV115 E39R S GAATCCTGGCTGTGagAAGATACCTAAAGG SEQ ID NO: 311 13 TMHIV115 Y41R AS GTTGATCCTTTAGGcgTCTTTCCACAGCCAG SEQ ID NO: 312 12 TMHIV115 Y41R S CTGGCTGTGGAAAGAcgCCTAAAGGATCAAC SEQ ID NO: 313 24 TMHIV115 L42R as GGAGCTGTTGATCCTTTcGGTATCTTTCCACAGCC SEQ ID NO: 314 25 TMHIV115 L42R s GGCTGTGGAAAGATACCgAAAGGATCAACAGCTCC SEQ ID NO: 315 15 TMHIV115 K43R AS GAGCTGTTGATCCcTTAGGTATCTTTCCAC SEQ ID NO: 316 14 TMHIV115 K43R S GTGGAAAGATACCTAAgGGATCAACAGCTC SEQ ID NO: 317 17 TMHIV115 D44R AS AGGAGCTGTTGAcgCTTTAGGTATCTTT SEQ ID NO: 318 16 TMHIV115 D44R S AAAGATACCTAAAGcgTCAACAGCTCCT SEQ ID NO: 319 26 TMHIV115 Q45R as CCCAGGAGCTGTcGATCCTTTAGGTATC SEQ ID NO: 320 27 TMHIV115 Q45R s GATACCTAAAGGATCgACAGCTCCTGGG SEQ ID NO: 321 28 TMHIV115 Q46R as CAAATCCCCAGGAGCcGTTGATCCTTTAG SEQ ID NO: 322 29 TMHIV115 Q46R s CTAAAGGATCAACgGCTCCTGGGGATTTG SEQ ID NO: 323 30 TMHIV115 L47R as CAAATCCCCAGGcGCTGTTGATCCTTTAG SEQ ID NO: 324 31 TMHIV115 L47R s CTAAAGGATCAACAGCgCCTGGGGATTTG SEQ ID NO: 325 32 TMHIV115 L48R as CCCAAATCCCCcGGAGCTGTTG SEQ ID NO: 326 33 TMHIV115 L48R s CAACAGCTCCgGGGGATTTGGG SEQ ID NO: 327 34 TMHIV115 G49R as CCCCAAATCCgCAGGAGCTGTTG SEQ ID NO: 328 35 TMHIV115 G49R s CAACAGCTCCTGcGGATTTGGGG SEQ ID NO: 329 36 TMHIV115 150R as GCAACCCCAtcTCCCCAGGAGCTG SEQ ID NO: 330 37 TMHIV115 150R s CAGCTCCTGGGGAgaTGGGGTTGC SEQ ID NO: 331 38 TMHIV115 W51R as GCAACCCCAtcTCCCCAGGAGCTG SEQ ID NO: 332 39 TMHIV115 W51R s CAGCTCCTGGGGAgaTGGGGTTGC SEQ ID NO: 333
(40) HIV115 Y41 Mutant Construction:
(41) To explore the amino acid sequence necessary for the loss of immunosuppression, HIV115 Y41 mutants were produced by PCR using the pDFG HIV115 WT plasmid as template and pairs of primers 1-42 and 43-2, 1-44 and 45-2, 1-46 and 47-2, 1-48 and 49-2, 1-50 and 51-2, or 1-52 and 53-2, to introduce the Y41K, Y41H, Y41A, Y41G, Y41F, or Y41L mutations respectively. The PCR products were then used as templates in subsequent PCR using primers 1-2. These PCR fragments were digested with SfiI and MluI and inserted into pDFG-ectoSyncytin-1 (Mangeney et al, 2007) opened with the same enzymes
(42) All the constructions were sequenced before use.
(43) TABLE-US-00052 N.sup.o Name Primer sequence (5-3) SEQ ID NO 42 TMHIV115 Y41K as GTTGATCCTTTAGtTtTCTTTCCACAGCCAG SEQ ID NO: 334 43 TMHIV115 Y41K s CTGGCTGTGGAAAGAaAaCTAAAGGATCAAC SEQ ID NO: 335 44 TMHIV115 Y41H as GTTGATCCTTTAGGTgTCTTTCCACAGCCAG SEQ ID NO: 336 45 TMHIV115 Y41H s CTGGCTGTGGAAAGAcACCTAAAGGATCAAC SEQ ID NO: 337 46 TMHIV115 Y41A as GTTGATCCTTTAGGgcTCTTTCCACAGCCAG SEQ ID NO: 338 47 TMHIV115 Y41A s CTGGCTGTGGAAAGAgcCCTAAAGGATCAAC SEQ ID NO: 339 48 TMHIV115 Y41G as GTTGATCCTTTAGGccTCTTTCCACAGCCAG SEQ ID NO: 340 49 TMHIV115 Y41G s CTGGCTGTGGAAAGAggCCTAAAGGATCAAC SEQ ID NO: 341 50 TMHIV115 Y41F as GTTGATCCTTTAGGaATCTTTCCACAGCCAG SEQ ID NO: 342 51 TMHIV115 Y41F s CTGGCTGTGGAAAGATtCCTAAAGGATCAAC SEQ ID NO: 343 52 TMHIV115 Y41L as GTTGATCCTTTAGGagTCTTTCCACAGCCAG SEQ ID NO: 344 53 TMHIV115 Y41L s CTGGCTGTGGAAAGActCCTAAAGGATCAAC SEQ ID NO: 345
(44) HIV115 Y41 Double Mutants Construction:
(45) HIV115 Y41R K72A, G or S double mutants were produced by PCR using the pDFG HIV115 Y41R plasmid as template and pairs of primers 1-94 and 93-2, 1-96 and 95-2, or 1-98 and 97-2. The PCR products were then used as templates in subsequent PCR using primers 1-2. These PCR fragments were digested with SfiI and MluI and inserted into pDFG-ectoSyncytin-1 (Mangeney et al, 2007) opened with the same enzymes. HIV115 R40X Y41R double-mutants were produced by PCR using the pDFG HIV115 Y41R as template and pairs of primers 1-54 and 55-2, 1-56 and 57-2 to introduce the R40A and R40E mutations respectively. HIV115 R40X Y41A double-mutants were produced by PCR using the pDFG HIV115 Y41A as template and pairs of primers 1-58 and 59-2, 1-60 and 61-2, 1-62 and 63-2, 1-64 and 65-2 to introduce the R40A, R40E, R40S, R40T mutations respectively. HIV115 R40X simple mutants were also generated using pDFG HIV 115 WT as template and pairs of primers 1-66 and 67-2, 1-68 and 69-2, 1-70 and 71-2, 1-72 and 73-2.
(46) The PCR products were then used as templates in subsequent PCR using primers 1-2. These PCR fragments were digested with SfiI and MluI and inserted into pDFG-ectoSyncytin-1 (Mangeney et al, 2007) opened with the same enzyme.
(47) TABLE-US-00053 N.sup.o Name Primer sequence (5-3) SEQ ID 54 TM HIV115 CTGGCTGTGGAAgcAcgCCTAAAGGATCAAC SEQ ID NO: 378 R40AY41R-S 55 TM HIV115 GTTGATCCTTTAGGcgTgcTTCCACAGCCAG SEQ ID NO: 379 R40AY41R-AS 56 TM HIV115 CTGGCTGTGGAAgaAcgCCTAAAGGATCAAC SEQ ID NO: 380 R40EY41R-S 57 TM HIV115 GTTGATCCTTTAGGcgTtcTTCCACAGCCAG SEQ ID NO: 381 R40EY41R-AS 58 TM HIV115 CTGGCTGTGGAAgctgcCCTAAAGGATCAAC SEQ ID NO: 382 R40AY41A-S 59 TM HIV115 GTTGATCCTTTAGGgcagcTTCCACAGCCAG SEQ ID NO: 383 R40AY41A-AS 60 TM HIV115 CTGGCTGTGGAAgaagcCCTAAAGGATCAAC SEQ ID NO: 384 R40EY41A-S 61 TM HIV115 GTTGATCCTTTAGGgcttcTTCCACAGCCAG SEQ ID NO: 385 R40EY41A-AS 62 TM HIV115 CTGGCTGTGGAAagcgcCCTAAAGGATCAAC SEQ ID NO: 386 R40SY41A-S 63 TM HIV115 GTTGATCCTTTAGGgcgctTTCCACAGCCAG SEQ ID NO: 387 R40SY41A-AS 64 TM HIV115 CTGGCTGTGGAAacagcCCTAAAGGATCAAC SEQ ID NO: 388 R40TY41A-S 65 TM HIV115 GTTGATCCTTTAGGgctgtTTCCACAGCCAG SEQ ID NO: 389 R40TY41A-AS 66 TM HIV115 R40A-S CTGGCTGTGGAAgctTACCTAAAGGATCAAC SEQ ID NO: 390 67 TM HIV115 R40A- GTTGATCCTTTAGGTAagcTTCCACAGCCAG SEQ ID NO: 391 AS 68 TM HIV115 R40E-S CTGGCTGTGGAAgaaTACCTAAAGGATCAAC SEQ ID NO: 392 69 TM HIV115 R40E- GTTGATCCTTTAGGTAttcTTCCACAGCCAG SEQ ID NO: 393 AS 70 TM HIV115 R40S-S CTGGCTGTGGAAagcTACCTAAAGGATCAAC SEQ ID NO: 394 71 TM HIV115 R40S- GTTGATCCTTTAGGTAgctTTCCACAGCCAG SEQ ID NO: 395 AS 72 TM HIV115 R40T-S CTGGCTGTGGAAacaTACCTAAAGGATCAAC SEQ ID NO: 396 73 TM HIV115 R40T- GTTGATCCTTTAGGTAtgtTTCCACAGCCAG SEQ ID NO: 397 AS 93 TMHIV115 K72A s GCTAGTTGGAGTAATgcATCTCTGGAACAGATTTGG SEQ ID NO: 398 94 TMHIV115 K72A CCAAATCTGTTCCAGAGATgcATTACTCCAACTAGC SEQ ID NO: 399 as 95 TMHIV115 K72G s GCTAGTTGGAGTAATggATCTCTGGAACAGATTTGG SEQ ID NO: 400 96 TMHIV115 K72G CCAAATCTGTTCCAGAGATccATTACTCCAACTAGC SEQ ID NO: 401 as 97 TMHIV115 K72S s GCTAGTTGGAGTAATtcATCTCTGGAACAGATTTGG SEQ ID NO: 402 98 TMHIV115 K72S CCAAATCTGTTCCAGAGATgaATTACTCCAACTAGC SEQ ID NO: 403 as
(48) Introduction of HIV115 Mutations into an HIV Env Expression Vector:
(49) To introduce these HIV envelope mutations into the HIV env pTr712 expression vector (Schnierle et al PNAS 1997), a silent mutation was first generated to create an SfiI insertion site. PCR fragments were generated using pTr712 as a template and primer pairs 38-39 and 40-41. The PCR products were then used as templates in subsequent PCR using primers 38-41. The resulting PCR fragment was then digested with BsaBI and HindIII and inserted into the pTr712 plasmid opened with the same enzymes resulting in the pTr712-Sfi plasmid. PCR fragments of each HIV115 mutation were then generated by using primers 40-41 and the pDFG HIV115 mutant plasmids as templates, digestion with SfiI and HindIII and then insertion into the pTr712-Sfi plasmid opened with the same enzymes.
(50) All the constructions were sequenced before use.
(51) TABLE-US-00054 N.sup.o Name Primer sequence (5-3) SEQ ID NO 38 HIV BH10 BsaBI s acaaattagatgttcatcaaatattacaggg SEQ ID NO: 346 39 HIV BH10 SfiI mutsil as GCAACAGATGCTGTTGgGCCTCAATgGCCCTCAGCA SEQ ID NO: 347 AATTGTTC 40 HIV BH10 SfiI mutsil s GAACAATTTGCTGAGGGCcATTGAGGCcCAACAGCA SEQ ID NO: 348 TCTGTTGC 41 HIV BH10 HindIII as gtgtattaagcttgtgtaattgttaatttctc SEQ ID NO: 349 74 EnvHIVTr712-Xho-Age-Kozak-S NNNNNCTCGAGACCGGTccaactagaaccATGAGAGTGA SEQ ID NO: 404 AGGAGAAATATCAGC 75 EnvHIVTr712-Mlu-AS NNNNNACGCGTTCAATATCCCTGCCTAACTC SEQ ID NO: 405 76 EnvHIVWT-Mlu-AS NNNNNACGCGTTTATAGCAAAATCCTTTCCAAGC SEQ ID NO: 406
(52) Establishment of Env-Expressing Tumor Cells and MCA205 Tumor-Rejection Assay:
(53) 7.510.sup.5 293T cells were cotransfected with the env-expressing pDFG retroviral vector to be tested (1.75 g) and expression vectors for the MLV proteins (0.55 g for the amphotropic MLV env vector and 1.75 g for the MLV gag and pol vector). 36 hours post-transfection, supernatants were harvested for infection of MCA205 tumor cells (2.5 ml of supernatant per 510.sup.5 cells with 8 g/ml polybrene). Cells were maintained in selective medium (400 units/ml hygromycin) for 3 weeks, and then washed with PBS, trypsinized and inoculated subcutaneously in the shaved area of each mouse right flank as in Mangeney et al (1998, 2007). Tumor growth was monitored by palpation twice or thrice weekly and tumor area (mm.sup.2) determined by measuring perpendicular tumor diameters. The extent of immunosuppression was quantified by an index based on tumor size: (A.sub.env-A.sub.none)/A.sub.none, where A.sub.env and A.sub.none are the mean areas at the peak of growth of tumors from Balb/c mice injected with env-expressing or control cells, respectively.
(54) Analysis of HIV Env Expression:
(55) 293T cells were transfected with 4 mg of the expression vector for the HIV-1 envelope (pTr712) either wild-type or mutated at the indicated positions, by Calcium Phosphate precipitation. Cells are washed 16 h later and then harvested 2 days post-transfection using PBS-EDTA 5 mM. The 110-H monoclonal antibody (anti-V3 loop, gift from Hybridolab, Pasteur Institute) was used ( 1/200 dilution) to stain the HIV envelope. As a secondary antibody, the Inventors used the goat anti mouse IgG Alexa 488 ( 1/400) (Invitrogen). For intracellular HIV env staining, 293T cells were fixed with a formaldehyde buffer and then permeabilized (BD cytofix/cytoperm, BD Biosciences). The isotype mouse anti IgG1Kappa (BD Biosciences) was used to control non-specific staining. Fluorescence was acquired by flow cytometry using a FACS Calibur (BD Biosciences), and data analysed by the CellQuest software (BD Biosciences).
(56) Mutated Env Pseudotyping and Measure of Viral Titer:
(57) 293T cells are triple transfected with 3 mg of a reporter MLV vector carrying GFP (CNCG), 1.75 mg Mo-MLV gag-pol vector and 0.55 mg phCMV vector encoding HIV-1 envelope wt or mutated at the indicated positions. The infectivity of Mo-MLV virions pseudotyped with HIV-1 Env, harvested 48 hours post-transfection, is measured using U87 cells (CD4.sup.+, CXCR4.sup.+) as target cells. The infectivity of the enveloppes is analysed after 72 h exposure diluted 0.45 mm-filtered supernatant in presence of 4 mg/mL polybrene. The fluorescence (GFP) is acquired by flow cytometry using a FACS Calibur (BD Biosciences). The results are analysed by the CellQuest software (BD Biosciences). The resulting titers (number of infected cells/mL) are calculated as the following: (% GFP.sup.+ cells (infected)plated cell number)/volume of supernatant1000.
(58) Env SIV Mutants Construction:
(59) PCR fragments were generated using p239 SPE3 (the plasmid encoding the SIV half virus containing the envelope protein) as a template and primer pairs 77-79 and 78-80, 77-81 and 78-82, 77-83 and 78-84, 77-85 and 78-86, 77-87 and 78-88, 77-89 and 78-90 to introduce the E39R, K40R, Y41R, L42R, K43R, D44R mutations respectively. The PCR products were the used as templates in subsequent PCR using primers 77-78. The resulting PCR fragment was then digested with BmgBI and NheI and inserted into the p239 SPE3 plasmid opened with the same enzymes.
(60) All the constructions were sequenced before use.
(61) Introduction of SIV Mutants Ectodomain into pDFG:
(62) To generate the pDFG plasmids encoding the fragment of SIV envelope ectodomain-55, PCR fragments generated using p239 SPE3 WT and mutants as a template and primer pairs 91-92, were digested with SfiI and MluI and inserted into pDFG opened with the same enzymes.
(63) TABLE-US-00055 77 Env SIV S ccgctcagtcccgaactttattggc SEQ ID NO: 350 78 Env SIV AS ggtggggaagagaacactggcc SEQ ID NO: 351 79 SIV env E39R s cagactagggtcactgccatcCGCaagtacttaaaggaccaggcg SEQ ID NO: 352 80 SIV env E39R as cgcctggtcctttaagtacttGCGgatggcagtgaccctagtctg SEQ ID NO: 353 81 SIV env K40R s actagggtcactgccatcgagCGCtacttaaaggaccaggcgcag SEQ ID NO: 354 82 SIV env K40R as ctgcgcctggtcctttaagtaGCGctcgatggcagtgaccctagt SEQ ID NO: 355 83 SIV env Y41R s GCCATCGAGAAGcgCTTAAAGGACCAGGCG SEQ ID NO: 356 84 SIV env Y41R as CGCCTGGTCCTTTAAGcgCTTCTCGATGGC SEQ ID NO: 357 85 SIV env L42R s gtcactgccatcgagaagtacCGCaaggaccaggcgcagctg SEQ ID NO: 358 86 SIV env L42R as cagctgcgcctggtccttGCGgtacttctcgatggcagtgac SEQ ID NO: 359 87 SIV env K43R s gccatcgagaagtacttaCGCgaccaggcgcagctgaatgcttgg SEQ ID NO: 360 88 SIV env K43R as ccaagcattcagctgcgcctggtcGCGtaagtacttctcgatggc SEQ ID NO: 361 89 SIV env D44R s gagaagtacttaaagCGCcaggcgcagctgaatgcttgg SEQ ID NO: 362 90 SIV env D44R as attcagctgcgcctgGCGctttaagtacttctcgatggc SEQ ID NO: 363 91 TMSIV55 Sfi S ACATggcccagccggccgctgggatagtgcagcaac SEQ ID NO: 364 92 TMSIV55 Mlu AS GTATacgcgtTTAaaacgcacatccccaagcattc SEQ ID NO: 365
Comparative Example
Test of the In Vivo Effect of the Mutation G49R, which Corresponds to the Mutation G19R in the International Application WO 2010/022,740
(64) WO 2010/022,740 discloses a consensus sequence of 50 amino acid of the HIV ENV protein. In this sequence, it is suggested that substitution of amino acids in positions 10, 19, 24, 34 and 40 affect the immunosuppressive properties of the HIV ENV protein.
(65) These mutations are a transposition in lentivirus of the teaching of WO 2005/095,442 limited to endogenous or onco retroviruses. The authors of WO 2005/095,442 are also the authors of the present application and they early observed that such a transposition is not effective.
(66) Despite the fact that any amino acids can be assigned to the positions 10, 19, 24, 34 or 40 in the consensus sequence of WO 2010/022,740, only one substitution (one residue for one position) was tested by ex vivo experiments in WO 2010/022,740. It is the mutation G19R, which corresponds to the mutation G49R in the present
(67) Because the immune response of an individual involves different organs and different cellular and non-cellular components, ex vivo results have no predictive value concerning the in vivo immunosuppressive properties of a viral protein.
(68) To determine if the mutations previously disclosed in WO 2010/022,740 are suitable for a medical use, the mutation G49R has been tested using the MCA205 tumor rejection in vivo assay, as defined in the section Establishment of env-expressing tumor cells and MCA205 tumor-rejection assay of the Example.
(69) As shown in
(70) This result demonstrates the insufficiently described teaching of WO 2010/022,740 since the only one mutation tested in WO 2010/022,740, using an ex vivo test, does not significantly affect the in vivo immunosuppressive properties of the HIV ENV protein.
(71) As a consequence, WO 2010/022,740 raises the same technical problem as the present invention but does not offer a technical solution.