Antibody molecules and uses thereof
12247067 ยท 2025-03-11
Assignee
Inventors
- Neil Andrew Robert Gow (Aberdeen, GB)
- Fiona Marion Rudkin (Aberdeen, GB)
- Lars-Peter Erwig (Blunham, GB)
- Allan Jensen (Frederiksberg, DK)
Cpc classification
C07K16/14
CHEMISTRY; METALLURGY
G01N2469/10
PHYSICS
A61K45/06
HUMAN NECESSITIES
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
C07K2317/33
CHEMISTRY; METALLURGY
A61K39/39575
HUMAN NECESSITIES
C07K2317/92
CHEMISTRY; METALLURGY
International classification
C07K16/14
CHEMISTRY; METALLURGY
A61K39/00
HUMAN NECESSITIES
A61K39/395
HUMAN NECESSITIES
A61K45/06
HUMAN NECESSITIES
Abstract
This invention relates to recombinant human antibody molecules. The antibodies bind fungal antigens, for example from Candida spp. Human antibody encoding genes targeting clinically relevant Candida epitopes have been isolated from single B cells from carefully selected donors and screened with specified types of protein or cell wall extract. The panel of purified, fully human recombinant IgG1 mAbs generated displayed a diverse range of specific binding profiles and demonstrated efficacy in a disease model. The fully human mAbs and derivatives thereof have utility in the generation of diagnostics, therapeutics and vaccines.
Claims
1. A method of treatment of a Candida infection comprising administering an anti-Candida antibody molecule to an individual in need thereof, wherein the antibody molecule is a whole antibody comprising a VH domain comprising: (i) a HCDR1 having the amino acid sequence of SEQ ID NO: 277; (ii) a HCDR2 having the amino acid sequence of SEQ ID NO: 279; and (iii) a HCDR3 having the amino acid sequence of SEQ ID NO: 281; and a VL domain comprising: (i) a LCDR1 having the amino acid sequence of SEQ ID NO: 284; (ii) a LCDR2 having the amino acid sequence of SEQ ID NO: 286; and (iii) a LCDR3 having the amino acid sequence of SEQ ID NO: 288.
2. A method according to claim 1, wherein the fungal infection is caused by C. albicans and wherein the infection is in a hyphal or yeast phase.
3. A method according to claim 1, wherein the treatment further comprises administering an additional antifungal agent.
4. The method according to claim 1, wherein the VH domain comprises at least one sequence selected from the following: (i) a FW1 having the amino acid sequence of SEQ ID NO: 276; (ii) a FW2 having the amino acid sequence of SEQ ID NO: 278; (iii) a FW3 having the amino acid sequence of SEQ ID NO: 280; and (iv) a FW4 having the amino acid sequence of SEQ ID NO: 282.
5. The method according to claim 1, wherein the VL domain comprises at least one sequence selected from the following: (i) a FW1 having the amino acid sequence of SEQ ID NO: 283; (ii) a FW2 having the amino acid sequence of SEQ ID NO: 285; (iii) a FW3 having the amino acid sequence of SEQ ID NO: 287; and (iv) a FW4 having the amino acid sequence of SEQ ID NO: 289.
6. The method according to claim 1, wherein the VH domain and the VL domain have amino acid sequences of SEQ ID NO: 19 and SEQ ID NO: 37, respectively.
7. The method of claim 1, wherein the fungal infection is caused by a species selected from the group consisting of C. albicans, C. dubliniensis, C. tropicalis, C. parapsilosis and C. lusitaniae.
8. The method of claim 3, wherein the additional antifungal agent is an azole, a polyene or an echinocandin.
Description
FIGURES
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EXAMPLE 1GENERATION OF FULLY HUMAN ANTI-CANDIDA MABS BY SINGLE B CELL CLONING
(19) The generation of recombinant mAbs through direct amplification of VH and VL genes from single B cells produces fully human, affinity matured mAbs with the native antibody heavy and light chain pairing intact (14). We employed this technology to generate human recombinant anti-Candida mAbs to a defined C. albicans antigenthe morphogenesis-regulated protein 1 (Hyr1) protein expressed only in the hyphal cell wall (40), and to C. albicans whole cell wall preparations. Hyr1 protein was selected based on its role in proposed role in resisting phagocyte killing and pre-clinical data demonstrating that a recombinant N-terminal fragment of Hyr1 confers protection in a murine model of disseminated candidiasis (23, 29, 41). Furthermore, because Hyr1 is expressed solely on C. albicans hyphal cells so mAbs generated against this protein would serve as C. albicans-specific markers. In addition we used C. albicans whole cell wall extracts as a target to screen against allows for the isolation of mAbs that bind to an array of different antigens, anticipating that some of the resulting mAbs would be pan fungal and therefore possess a broad spectrum of therapeutic activity and pan-Candida diagnostic specificity.
(20) To enhance the likelihood of isolating Candida-related antibodies, the class switched memory (CSM) B cells used in this study were isolated from the blood of individuals who had recovered from a superficial Candida infection within a year of sampling. Donors were selected from a panel of volunteers and the levels of target-specific circulating IgG in the donor plasma was assessed via ELISA. In this screen, donor 85 demonstrated the greatest IgG activity against C. albicans whole cell and donor 23 had the highest IgG titre against Hyr1 (
(21) In total, 18 purified recombinant IgG1 mAbs were generated using the single B cell technology described above. Five of these mAbs bound to purified Hyr1 protein and 13 bound to C. albicans whole cells (Table S3).
EXAMPLE 2PURIFIED RECOMBINANT ANTI-CANDIDA MABS EXHIBIT SPECIFIC TARGET BINDING
(22) Purified anti-Hyr1 mAbs were primarily assessed for functionality through binding to the purified recombinant N-terminus of Hyr1 protein via ELISA. Four of the five mAbs demonstrated strong binding to the purified antigen with EC.sub.50 values of 104 ng/ml, 76.5 ng/ml, 49.6 ng/ml and 53.3 ng/ml for AB120, AB121, AB122 and AB123 (
(23) The purified recombinant anti-whole cell mAbs were originally screened and isolated against C. albicans overnight culture. As such, the initial QC of these mAbs was to assess their binding to C. albicans whole cells via ELISA. The majority of purified anti-whole cell mAbs bound C. albicans yeast cells with high affinity with EC.sub.50 values ranging from 2.8 to 31.1 ng/ml (
(24) Purified anti-whole cell mAbs exhibited a variety of affinities when binding to C. albicans cells where both yeast and hyphal morphologies were present (
EXAMPLE 3PURIFIED RECOMBINANT ANTI-CANDIDA MABS SHOW DISTINCT BINDING PATTERNS TO C. ALBICANS AND OTHER FUNGAL SPECIES
(25) The recombinant anti-Hyr1 mAbs generated by single B cell technology were initially isolated by screening against N-terminus of Hyr1 protein and, following purification, demonstrated binding to this recombinant antigen (above). We then visualized binding of these mAbs to Hyr1 protein expressed on the C. albicans cell surface by immunofluorescent staining using a fluorescently labelled secondary anti-human IgG mAb for detection. It was observed that the anti-Hyr1 mAbs bound to the predicted cellular location on the hyphae, and not the WT C. albicans yeast cells grown in different culture conditions (
(26) Next we visualised binding to WT C. albicans for the anti-whole cell mAbs via indirect immunofluorescent staining. The anti-whole cell mAbs demonstrated a range of binding profiles to WT C. albicans (
(27) C. albicans cells were enzymatically treated with proteinase K, endoglycosidase H (endo-H) and zymolyase 20T and assessed for mAb binding. Proteinase K treatment reduced AB120 (anti-Hyr1) but not anti-whole cell mAbs binding to C. albicans confirming that anti-Hyr1 antibody recognised a protein epitope (
(28) Commensurate with the C. albicans-specific nature of HYR1, anti-Hyr1 mAbs only bound to C. albicans and not to a range of other Candida species (
(29) To assess for pan-fungal binding activity, all the anti-whole cell mAbs were tested against A. fumigatus. C. neoformans, C. gattii, P. carinii, M. circinelloides and M. dermatis but no binding was observed (
(30) In conclusion, all purified recombinant mAbs generated by this single B cell technology bound specifically to their target antigens with high affinity. As expected, the anti-whole cell mAbs demonstrated distinct binding patterns to WT C. albicans and other pathogenic fungi, indicating that they target a range of different antigens and the expression levels of these antigens varies from species to species.
EXAMPLE 4PURIFIED RECOMBINANT ANTI-CANDIDA MABS OPSONISE C. ALBICANS FOR PHAGOCYTOSIS BY MACROPHAGES
(31) Phagocytic cells of the innate immune system are the first line of defence against fungal pathogens. Antibody binding enhances phagocytic clearance of pathogens. We utilised a live cell phagocytosis assay to examine whether the anti-Candida mAbs generated in this study opsonized C. albicans for phagocytosis by J774.1 macrophages and human monocyte-derived macrophages. The macrophages were challenged with live, C. albicans CAI4-CIp10 which had been pre-incubated with an anti-Candida mAb, an isotype control mAb or saline for 1 h. Live cell video microscopy using our standard phagocytosis assay (42, 43) was employed to determine the degree of opsonisation. No significant difference was observed between the saline control and anti-Candida mAb groups in terms of the overall number of C. albicans cells taken up during the 3 h by macrophages. However, there was a difference in the time by which the majority of uptake events had occurred (
EXAMPLE 5MACROPHAGES RAPIDLY ENGULF MAB-BOUND C. ALBICANS CELLS THROUGH FCR BINDING
(32) Next we used live cell video microscopy and image analysis to examine whether there was any difference in the rate of engulfment between C. albicans cells pre-incubated with saline compared to C. albicans cells pre-incubated with selected anti-Candida mAbs. As shown previously we defined the rate of engulfment as the time taken from establishment of cell-cell contact to the time at which a C. albicans cell had been completely engulfed by a macrophage as indicated by its loss of FITC green fluorescence (42, 43) (
(33) Similar observations were obtained using human monocyte-derived macrophages (
(34) Blocking FcRs on the surface of the macrophage decreased the rate of engulfment of AB140-bound C. albicans compared to that of the saline control (
EXAMPLE 6MACROPHAGES MIGRATE FURTHER, FASTER AND MORE DIRECT TOWARDS ANTI-CANDIDA MAB BOUND C. ALBICANS CELLS
(35) We showed that antibody-bound C. albicans cells were cleared earlier by macrophages than control cells. To determine the effect of antibody binding on uptake dynamics, we used imaging analysis to digitise the migration of macrophages until their first uptake event, measuring the distance travelled, directionality and velocity of the macrophage towards control or antibody-bound fungal cells. Macrophages travelled further and at a greater velocity towards C. albicans yeast cells that had been pre-incubated with a whole-cell mAb (AB140) compared to control fungal cells or those pre-incubated with IgG1 control mAb (
EXAMPLE 7ANTI-WHOLE CELL MAB REDUCES FUNGAL BURDEN IN A MODEL OF DISSEMINATED CANDIDIASIS
(36) To determine whether the anti-Candida mAbs possessed therapeutic potential in vivo, their action was assessed in a murine model of systemic candidiasis (44). C. albicans SC5314 yeast cells were pre-incubated for 1 h with either saline, an IgG1 isotype control mAb, AB119 (anti-whole cell) or AB120 (anti-Hyr1) before iv injection into the mouse lateral tail vein. Disease progression was monitored by weight change and kidney fungal burdens at day 3 which together generated an overall outcome score for disease progression (44). When SC5314 was pre-incubated with AB120 there was no decrease in fungal burden compared to the saline control or the IgG1 control mAb (
EXAMPLE 8DISCUSSION OF EXAMPLES 1-7
(37) Monoclonal antibodies (mAbs) have the potential to be used in multiple fungal therapy and disease management situations. Here we describe and use for the first time a novel technology facilitating the isolation of fully human anti-Candida mAbs against whole cells and a specific cellular target. These mAbs were derived directly from single B cells from donors with a history of mucosal Candida infection and demonstrated distinct binding profiles to C. albicans and other pathogenic fungi, as well as the ability to opsonise fungal cells and to enhance phagocytosis and show partial protection in a murine model of disseminated candidiasis.
(38) mAbs-based agents have been identified as an alternative strategy to complement the medical gaps associated with current antifungal treatments and diagnostics (13, 45, 46). In this study we generated 18 fully human recombinant anti-Candida mAbs through the direct amplification of mRNA isolated from VH and VL antibody genes produced naturally in vivo in response to a Candida infection. By employing this method, the purified, affinity matured recombinant mAbs generated were less likely to be immunogenic, had importantly retained their native antibody heavy and light chain pairings, and therefore are more likely to be of therapeutic benefit (35). IgG1 was selected as the antibody scaffold because this isotype makes up the majority of mAbs in the clinic and so is the best characterised in terms of drug development (47, 48). Thirteen of the mAbs generated bound to C. albicans whole cell and 5 bound to recombinant purified Hyr1 proteina protein which is considered to be important for C. albicans resistance to phagocytosis and is currently in development as an experimental vaccine (29, 41) demonstrating that this novel technology can be utilised for screening against a wide range of specific antigens.
(39) An antibody that recognises an antigen expressed across different fungal species could be highly beneficial as a pan-fungal therapeutic. At the same time, one of the major contributors to poor prognosis in the clinic is the lack of accurate and timely diagnostics with a knock on delay in appropriate treatment (6, 7, 49). In this case, it would be more beneficial to have a species-specific antibody which recognises an antigen only expressed on one species. As such, we assessed binding of our panel of mAbs to a number of emerging and resistant pathogenic fungi. We observed that anti-Hyr1 mAbs bound solely to C. albicans hyphae, correlating with findings that have reported that Hyr1 is only expressed on C. albicans hyphal cells (29, 40, 50). The binding pattern of anti-whole cell mAbs was more varied with the majority of mAbs binding strongly to the species that are closely related to C. albicans such as the emerging pathogens C. tropicalis and C. parapsilosis (51). As expected, little or no binding was observed to the more evolutionarily distinct species C. glabrata and C. krusei. Altogether this demonstrates that the novel technology employed here can be utilised to generate species-specific as well as pan fungal mAbs, which has great implications in terms of anti-fungal drug discovery and diagnostics. Furthermore, these mAbs could be utilised to isolate and identify protective antigens for development as fungal vaccines.
(40) One of the many ways mAbs exert their protective effects is through opsonizing cells for phagocytosis (15). We have shown previously that by employing live cell imaging we can breakdown this process down into its component parts, thus allowing us to do a more in-depth analysis on the effect of mAbs on the individual stages of phagocytosis (42, 43). Here we observed that when yeast and hyphal cells were coated with an anti-whole cell mAb or a hyphal cell was coated with an anti-Hyr1 mAb, cells were engulfed at a significantly faster rate compared to unopsonized cells, and this was through engagement of the FcR. Furthermore, macrophages migrated further, faster and in a more direct manner towards opsonized C. albicans cells and this contributed to earlier clearance of fungal cells.
(41) A number of invasive infections occur in the immunocompetent patient population as a consequence of severe trauma, and in these situations opsonizing mAbs could be a viable treatment option. The majority of antibody therapeutics in the clinic are hIgG1 so this isotype has been routinely tested pre-clinically in murine models of disease (47). Furthermore, the literature shows that hIgG1 binds to all activating mFcRs with a similar profile to the most potent IgG isotype in mice, mIgG2a, validating the use of mouse models to assess Fc-mediated effects of hIgG1 mAbs (47). As such, we utilised an established three-day murine model of disseminated candidiasis (44, 52) to assess the efficacy of anti-Candida mAbs in vivo and observed a significant decrease in kidney fungal burden and overall disease outcome score when C. albicans was pre-incubated with an anti-whole cell mAb.
(42) We have generated fully human antibodies from single B-cells to create reagents that have high specificity for targets with utility in the antifungal diagnostic and therapeutic markets. The antibodies are of high affinity and are and can be synthesised in milligram quantities under defined conditions for heterologous protein expression.
(43) The relative by which these antibodies can be produced means that they could be used singly or in multiplex formats to create novel polyvalent diagnostic tests, as vaccine Candidates or as therapeutic delivery systems to target toxic molecules to specific microbial or cellular targets.
EXAMPLE 9CIE ANALYSIS
(44)
EXAMPLE 10TEM ANALYSIS
(45)
(46) General Methods
(47) Candida Strains and Growth Conditions
(48) C. albicans serotype A strain CAI4+CIp10 (NGY152) was used as a control and its parent strain CAI4, used to construct the hyr1 null mutant C. albicans strain (40) and the hyr1 re-integrant strain (unpublished). The clinical isolates C. albicans SC5314, C. glabrata SC571182B, C. tropicalis AM2005/0546, C. parapsilosis ATCC22019, C. lusitaniae SC5211362H, C. krusei SC571987M, C. dubliniensis CD36 are shown in Table S1. All strains were obtained from glycerol stocks stored at 80 C. and plated onto YPD plates (2% (w/v) mycological peptone (Oxoid, Cambridge, UK), 1% (w/v) yeast extract (Oxoid), 2% (w/v) glucose (Fisher Scientific, Leicestershire, UK) and 2% (w/v) technical agar (Oxoid)). Candida strains tested were routinely grown in YPD (see above without the technical agar) except in the in vivo experiments where strains were grown in NGY medium (0.1% (w/v) Neopeptone (BD Biosciences), 0.4% (w/v) glucose (Fisher Scientific), 0.1% (w/v) yeast extract (Oxoid). Aspergillus fumigatus clinical isolate V05-27 was cultured on Potato Dextrose Agar slants for seven days before the spores were harvested by gentle shaking with sterile 0.1% Tween 20 in PBS. Harvested spores were purified, counted and re-suspended at a concentration of 110.sup.8 spores/ml. Swollen spores were generated by incubation in RPMI media for 4 h at 37 C.
(49) Malassezia dermatis CBS9169 was cultured on Modified Dixon agar (3.6% (w/v) Malt extract (Oxoid), 1% (w/v) Bacto peptone (BD Biosciences), 2% (w/v) Bile salts (Oxoid), 1% (w/v) Tween40 (Sigma), 0.2% (w/v) Glycerol (Acros Organics), 0.2% (w/v) Oleic acid (Fisher Scientific), 1.5% technical Agar (Oxoid)) supplemented with chloramphenicol (0.05% (w/v) Sigma) and cycloheximide (0.05% (w/v) Sigma)). Overnight culture of M. dermatis was grown in Modified Dixon Medium. Mucor circinelloides CBS277.49 was grown on Potato Dextrose Agar for 7 days before spores were harvested in PBS and filtered through 40 m Nylon Cell Strainer (BD Biosciences). Cryptococcus neoformans KN99 and Cryptococcus gattii R265 were grown in YPD overnight, washed in PBS and 110.sup.7 cells were added to 6 ml RPMI+10% FCS in 6 well-plates. Plates were incubated at 37 C.+5% CO.sub.2 for 5 days to induce capsule formation. Harvested cells were washed in PBS. Rat lung tissue isolates of Pneumocystis carinii M167-6 were washed in PBS and immunostained.
(50) Generation of Recombinant Hyr1 N-Protein
(51) The recombinant N-terminus of the Hyr1 protein (amino acids 63 to 350Table S2) incorporating an N-terminal 6His tag was expressed in HEK293F cells and purified by nickel-based affinity chromatography using a nickel NTA superflow column (QIAGEN, USA). Fractions containing the recombinant N-terminus of the Hyr1 protein were pooled and further purified via Analytical Superdex 200 gel filtration chromatography (GE Healthcare, USA) in PBS. QC of the recombinant protein via SDS-PAGE gel analysis, analytical size exclusion chromatography (SEC) and Western blot (using an anti-His antibody for detection) confirmed a protein of 32 kDa (data not shown).
(52) Identification of Human Anti-Hyr1 and Anti-Whole Cell mAbs from Donor B Cells PBMC Isolation
(53) In brief, peripheral venous blood from donors who had recovered from a Candida infection within the last year was collected in EDTA-coated vacutainers tubes and pooled. PBMCs and plasma were separated from the whole blood suspension via density gradient separation using Accuspin System-Histopaque-1077 kits (Sigma-Aldrich) according to manufacturer's instructions. Following separation, the plasma layer was aspirated and stored at 4 C. for later analysis of antibody titre and the PBMC layer was aspirated and washed in PBS and centrifugation at 250g for 10 min three times before final resuspension at a concentration of 110.sup.7 cells/mi in R10 media (RPMI 1640 (Gibco, Life Technologies), 10% FCS, 1 mM sodium pyruvate (Sigma), 10 mM HEPES (Gibco, Life Technologies), 4 mM L-glutamine (Sigma), 1 penicillin/streptomycin (Sigma)) containing additional 10% FCS and 10% DMSO. PBMCs were split into 1 ml aliquots and stored in liquid nitrogen until they were required.
(54) Purification of Donor Plasma
(55) IgG was purified from donor plasma using VivaPure MaxiPrepG Spin columns (Sartorius Stedman) according to manufacturer's instructions. In brief, plasma sample was applied to the spin column to facilitate IgG binding. The column was washed twice in PBS and then bound IgG was eluted in an amine buffer, pH 2.5 and neutralized with 1 M Tris buffer, pH8. Eluted IgG concentration was measured by absorbance at 280 nm using a NanoVue Plus Spectrophotometer (GE Healthcare).
(56) Circulating IgG Enzyme-Linked Immunosorbent Assay (ELISA) to Identify Donors with B Cells to Take Forward
(57) To identify the donor to use for subsequent class switched memory (CSM) B cell isolation and activation, ELISAs were carried out against the target antigens using IgG purified from donor plasma. NUNC maxisorp 384-well plates (Sigma) were coated with C. albicans overnight culture (whole cell) or 1 g/ml purified, recombinant N-terminus hyr1 protein antigen in 1PBS and incubated at 4 C. overnight. The next day, wells were washed three times with wash buffer (1PBS+0.05% Tween) using a Zoom Microplate Washer (Titertek). Wells were then blocked with block buffer (1PBS+0.05% Tween+0.5% BSA) for 1 h at room temperature with gentle shaking to inhibit non-specific binding. After three washes (as above), titrated purified IgG or IVIG in block buffer was added in duplicate, and the plates were incubated for 2 h at room temperature with gentle shaking. Wells were washed with wash buffer as above before addition of goat anti-human IgG, HRP conjugated (ThermoScientific) secondary antibody at 1:5000 dilution in blocking buffer. Plates were incubated for 45 min at room temperature with gentle shaking. To develop the ELISA, wells were washed three times with wash buffer (as above) before the addition of TMB (Thermo Scientific). Plates were incubated at room temperature for 5 min to allow the blue colour to develop and the reaction was quenched by the addition of 0.18 M sulphuric acid. The plates were then read at an OD of 450 nm on an Envision plate reader (PerkinElmer). Labstats software in Microsoft Excel was used to generate concentration-response curves for EC.sub.50 determination and donor selection for subsequent CSM B cell isolation and activation.
(58) Isolation of Class Switched Memory B Cells
(59) The PBMCs from donors who displayed a strong IgG response to the antigen of interest in the screening ELISA were taken forward for CSM B cell isolation and activation. The process of generating recombinant mAbs from a single donor's B cells to one particular antigen, beginning with the isolation of CSM B cells all the way through to expression and purification of recombinant mAbs, was termed an Activation. For each Activation, 510.sup.7 PBMCs were removed from the liquid nitrogen store and thawed by adding pre-warmed R10 media drop wise to the cells. The diluted cell suspension was then transferred into a fresh polypropylene tube containing pre-warmed R10, resulting in a final cell dilution of approximately 1:10. Benzonase nuclease HC, purity>99% (Novagen) was added at a 1:10000 dilution (to ensure any lysed cells and their components didn't interfere with the live cells), and the cells were centrifuged at 300g for 10 min at room temperature and the supernatant removed. PBMCs were then washed again in R10 before final resuspension in 1 ml R10 for PBMC cell number and viability determination.
(60) Isolation of class switched memory B cells from PBMCs was carried out by magnetic bead separation using a Switched Memory B cell isolation kit with Pre-Separation Filters and LS columns (MACS Miltenyi Biotec) according to manufacturer's instructions. In brief, counted PBMCs were incubated with a cocktail of biotin-conjugated antibodies against CD2, CD14, CD16, CD36, CD43, CD235a (glycophorin A), IgM and IgD. Cells were then washed and incubated with anti-biotin microbeads. Following another wash step, the suspension was passed through a Pre-Separation Filter (to remove cell aggregates) before applying it to an LS column where the magnetically labelled cells were retained in the column and the unlabelled CSM B cells passed through and could be collected in the flow-through for determination of cell number and viability.
(61) Activation of CSM B Cells
(62) To activate CSM B cells and promote antibody secretion into the supernatant, a mixture of cytokines, mAb, TLR agonist and a supplement were added to the R10 media (see above) to make complete R10 media. CSM B cells were resuspended in complete R10 media at 56 cells/ml and then plated out at 90 l/well (5 cells/well) in ThermoFisher Matrix 384 well plates using a Biomek FX (Beckman Coulter). Cells were incubated at 37 C. 5% CO.sub.2 for seven days. On day 7, 30 l/well of supernatant was removed and replaced with 30 l fresh complete R10. On day 13, all the supernatant was harvested from all plates and screened against the antigen of interest via ELISA. B cell activation and culturing was monitored by measuring IgG1 concentrations in B cell supernatants at day 7 and day 13.
(63) B Cell Supernatant Screen Against Target Antigens Via ELISA
(64) For B cell supernatant screening against target antigens, NUNC maxisorp 384-well plates (Sigma) were coated with C. albicans overnight culture (whole cell) or 1 g/ml purified, recombinant N-terminus hyr1 protein antigen in 1PBS and incubated at 4 C. overnight. Wells were washed three times with wash buffer using a Zoom Microplate Washer (Titertek) as above before incubation with blocking buffer for 1 h at room temperature with gentle shaking. After another three washes (as above), B cell supernatant was added and the plates incubated for 2 h at room temperature with gentle shaking. Wells were washed with wash buffer as above before addition of goat anti-human IgG, HRP conjugated (ThermoScientific) secondary antibody at 1:5000 dilution in blocking buffer and incubation for 45 min at room temperature with gentle shaking. ELISAs were developed and plates read at an OD of 450 nm on an Envision plate reader (PerkinElmer).
(65) Positive hits were defined as wells with an OD.sub.450 reading >4background. B cells in positive hit wells were resuspended in lysis buffer (ml DEPC-treated H2O (Life Technologies), 10 l 1 M Tris pH 8, 25 l RNAsin Plus RNAse Inhibitor (Promega)) and stored at 80 C.
(66) Generation of Recombinant Anti-Hyr1 and Anti-Whole Cell IgG1 mAbs: Amplification of VH, V-C and V-C GenescDNA Synthesis and PCR
(67) A schematic of the cloning protocol is shown in
(68) Prior to cDNA synthesis, B cell lysates were thawed and diluted 1:5, 1:15 and 1:25 in nuclease-free H.sub.2O (Life Technologies) before addition of oligodT.sub.20 (50 M) (Invitrogen, Life Technologies) and incubation at 70 C. for 5 min. Reverse transcription and the first PCR reaction (RT-PCR) were done sequentially using the QIAGEN OneStep RT-PCR kit according to manufacturer's instructions. For this step and the subsequent nested PCR step, amplification of the variable domain of human Ig heavy chain genes (VH), the variable and constant domains of human Ig kappa light chain genes (V-C) and the variable and constant domains of human Ig lambda light chain genes (V-C), were done in separate reactions. In brief, a reaction mixture was prepared containing QIAGEN OneStep RT-PCR Buffer 5x, dNTPs (10 mM), gene-specific forward and reverse primer mixes (10 M), QIAGEN OneStep RT-PCR Enzyme Mix and nuclease-free H.sub.2O. Reaction mixture was then added to wells of a 96-well PCR plate before addition of neat or diluted (1:5, 1:15, 1:25) B cell lysate as the template, resulting in a final reaction volume of 50 l/well. The following cycling conditions were used for the RT-PCR reaction; 50 C. for 30 min, 95 C. for 15 min then 35-40 cycles of (94 C. for 1 min, 55 C. for 1 min and 72 C. for 1 min) with a final extension at 72 C. for 10 min.
(69) Amplification of VH, V-C and V-C GenesNested PCR Reaction
(70) Nested PCR reactions were carried out using the PCR products from the RT-PCR reaction as the template, nested gene-specific primers based on Smith et al. (36) and Platinum PCR SuperMix High-Fidelity (Invitrogen, Life Technologies). A total of 27 forward primers specific for the VH framework 1 (FW1) sequence were used together with two reverse primers specific for the framework 4 (FW4) region of the VH gene. For nested PCR of the V-C gene, a mixture of 18 forward primers specific for human V FW1 sequence were used with a reverse primer specific to the human kappa constant region 3 end. For amplification of the V-C gene, a mixture of 31 forward primers specific for human V FW1 sequences were used together with a reverse primer that was placed at the 3 end of the human lambda constant region. The primers used to generate the PCR fragments in these nested PCR reactions contained 15 bp extensions which were complementary to the target downstream pTT5 expression vector. Reaction mixtures containing Platinum PCR SuperMix High Fidelity, gene-specific forward primer mix (10 M) and gene specific reverse primer mix (10 M) was added to wells in a 96-well PCR plate before addition of cDNA template. Amplification of VH genes, V-C genes and V-C genes, were done in separate reactions. After the nested PCR reaction, samples were analysed via agarose gel electrophoresis and positive hits identified and taken forward for downstream InFusion cloning with pTT5 mammalian expression vector.
(71) pTT5 Mammalian Expression Vector Preparation
(72) The pTT5 mammalian expression used for mAb expression (licensed from the National Research Council of Canada (NRCC)) (53). The pTT5 vector plasmid contained an IgG1 heavy chain gene in the multiple cloning site so digestion to generate the heavy chain (HC) backbone for downstream sub cloning of VH was done by double digestion using FastDigest Restriction enzymes (Thermo Scientific) with BssHII before the leader sequence of the VH region and SalI restriction after the FW4 of the VH domain. This yielded the heavy chain constant region in the vector backbone. For double digestion of the vector to generate the light chain (LC) backbone, the whole IgG1 heavy chain gene was with BssHII and BamHI astDigest Restriction enzymes (Thermo Scientific) to generate the vector ready for insertion of either -C or V-C. Digestion reactions to generate HC and LC backbones were carried out separately. Following confirmation of digestion, samples were run on a 1% agarose gel and bands were excised from the gel and purified using the QIAquick Gel Extraction kit (QIAGEN). DNA was quantified on a NanoVue Plus Spectrophotometer (GE Healthcare). To prevent vector self-ligation, the 3- and 5-termini of the linearized plasmids were dephosphorylated using FastAP Thermosensitive Alkaline phosphatase (Thermo Scientific). Reaction mixtures were cleaned up using the MinElute Reaction Cleanup Kit (QIAGEN) and then run on a 1% agarose gel. Bands corresponding to dephosphorylated HC and LC backbones were excised from the gel and purified using the QIAQuick Gel Extraction kit (QIAGEN) as above. Dephosphorylated linearized vector DNA was quantified on a NanoVue Plus spectrophotometer (GE Healthcare).
(73) In-Fusion Cloning
(74) The In-Fusion HD Cloning Kit (Clontech, USA) was used to clone the IgG VH, V-C and V-C genes into a pTT5 mammalian expression vector. To avoid the need for nested PCR product purification before cloning, cloning enhancer (Clontech, USA) was added to each nested PCR product in a 96-well PCR plate and incubated at 37 C. for 15 min, then 80 C. for 15 min. The cloning enhancer-treated PCR product was then added to the In-Fusion Enzyme Premix and linearized vector DNA (5-10 ng). Reactions were made up to 10 l with nuclease-free H.sub.2O and incubated for 15 min at 50 C. Samples were then either stored at 20 C. or placed on ice before transformation of Stellar Competent cells (Clontech). For transformation, 2 l of each In-Fusion reaction mixture was added to cells in a 96-well plate format, and left on ice for 30 min before heat shock at 42 C. for 40 sec and then returning to ice for 2 min. Cells were then recovered in SOC medium (Clontech, USA) with gentle shaking at 37 C. for 45-60 min before plating out onto LB agar plates (1% (w/v) tryptone, 0.5% (w/v) yeast extract, 1% (w/v) NaCl, 1.5% (w/v) agar) containing 100 g/ml ampicillin. Plates were incubated at 37 C. overnight and single colonies picked the next day.
(75) Plasmid DNA Generation for Transfection
(76) Following transformation, 8-16 single colonies per initial hit well for VH, V and V were picked and used to inoculate 2TY media containing 100 g/ml ampicillin in a Greiner deep well, 96-well plate (Sigma). VH, V and V plates were set up separately with the same plate layout to facilitate visual screening. Cells were grown at 37 C., 200 rpm overnight, and glycerol stocks were made the following day and stored at 80 C. To ensure accurate tracking of DNA sequences for downstream sequencing and transfections, each well inoculated by a single colony was given a unique ID based on the colony's original hit well and its position in the deep well 96 well plate following transformations. To obtain plasmid DNA for gene sequencing and small scale mammalian transfections, DNA minipreps from the overnight cultures were carried out in a 96-well plate format using the EPmotion (Eppendorf), according to manufacturer's instructions. DNA not taken for gene sequencing was stored at 20 C. until required for small scale transfections. Sequence data was analysed for CDR diversity and comparisons to germline sequences and used to identify clones to take forward for small scale transfection.
(77) Small Scale Expression of Recombinant mAbs
(78) Following VH, V and V gene sequencing, a file was generated containing all possible VH and V/V combinations resulting from the original hit wells from the primary ELISA screen. Automated mixing of the native heavy and light chain DNA pairing combinations (1.5 g of HC plasmid DNA and 1.5 g of LC plasmid DNA) into a new 96-well plate was facilitated through a HAMILTON MICROLAB Starline liquid handling platform (Life Science robotics, Hamilton Robotics). Subsequent mixed DNA was used for small scale transient transfection of 3 ml of suspension cultured Expi293F cells (Life Technologies, USA) at a density of 2.510.sup.6 cells/ml in 24-well tissue culture plates using the Expifectamine 293 Transfection kit (Life Technologies, USA) in accordance with manufacturer's instructions. Expi293F cells were maintained in pre-warmed (37 C.) sterile Expi293 expression media (Invitrogen) without antibiotics at 37 C., 7% CO.sub.2, 120 rpm shaking. Supernatants were harvested on day 6 and recombinant mAb expression was quantified using anti-human IgG Fc sensors on an Octet QK.sup.e (ForteBio, CA, USA) for identification of mAbs to upscale.
(79) Large Scale Expression, Purification and QC of Recombinant mAbs
(80) For downstream large scale mammalian transfections, where a greater amount of DNA was required, DNA was prepared using a QIAGEN Plasmid Maxi Kit (QIAGEN, USA) according to manufacturer's instructions with typical yields of 1.5 g/l.
(81) For large scale mAb expression, 100 g of total DNA (50 g of HC plasmid DNA and 50 g LC plasmid DNA) was used to transiently transfect 100 ml of suspension cultured Expi293F cells (Life Technologies, USA) at a density of 2.510.sup.6 cells/ml using the Expifectamine 293 Transfection Kit (Life Technologies, USA) in accordance with the manufacturer's instructions. Supernatants were harvested on day 6 and recombinant mAb expression was quantified as above using an Octet QK.sup.e (ForteBio). Recombinant mAbs were purified via affinity based Fast Protein Liquid Chromatography using HiTrap Protein A HP columns on an KTA (GE Healthcare) and eluted in 20 mM citric acid, 150 nM NaCl (pH2.5) before neutralisation with 1 M Tris buffer (pH8). Purified mAbs were dialysed in PBS overnight and IgG concentration was quantified on a NanoVue Spectrophotometer (GE Healthcare).
(82) All purified recombinant mAbs were quality control checked via SDS-PAGE gel analysis using 4-12% Bis-Tris SDS-PAGE gels under reducing and non-reducing conditions to confirm mass, analytical size exclusion chromatography (SEC) to check for protein aggregation/degradation and analytical mass spectrometry to confirm the amino acid sequence identity of each mAb. Purified recombinant mAbs were also tested for functionality by binding to target antigen/whole cell via ELISA.
(83) ELISA with Purified Recombinant mAbs
(84) For confirmation of binding to target as purified recombinant mAbs an ELISA was carried out using the protocol for B cell supernatant screen. The only change was that titrated purified recombinant mAb was added in place of B cell supernatant.
(85) Immunofluorescence Imaging of Anti-Hyr1 and Anti-Whole Cell mAbs Binding to Fungal Cells
(86) Indirect immunofluorescence was performed using purified recombinant mAbs. A single Candida colony was used to inoculate 10 ml YPD medium and incubated at 30 C., 200 rpm overnight. Overnight cultures were diluted 1:1333 in milliQ water and then added to a poly-L-lysine coated glass slide (Thermo Scientific, Menzel-Glser) and incubated for 30 min at room temperature to allow for adherence of yeast cells to the slide. To induce filamentation, cells were incubated in pre-warmed RPMI+10% FCS at 37 C. for 90 min-2 h (this step was omitted for staining of yeast cells), after which they were washed in Dulbecco's Phosphate Buffered Saline (DPBS) and fixed with 4% paraformaldehyde. Cells were washed again and blocked with 1.5% normal goat serum (Life Technologies) before staining with an anti-Candida mAb at 1-10 g/ml for 1 h at room temperature. After three PBS washes, cells were stained with Alexa Fluor 488 goat anti-human IgG antibody (Life Technologies) at a 1:400 dilution and incubated at room temperature for 1 h in the dark. For additional staining of fungal cell wall chitin, Calcofluor White (CFW) was added at 25 g/ml and cells were incubated for 10 min at room temperature in the dark and washed with DPBS. Slides were left to air dry before adding one drop of Vectashield mounting medium (Vector Labs) and applying a 20 mm20 mm coverslip to the slide. Cells were imaged in 3D on an UltraViEW VoX spinning disk confocal microscope (Nikon, Surrey, UK).
(87) Preparation of Human Monocyte-Derived Macrophages
(88) Human monocyte-derived macrophages were isolated from the blood of healthy volunteers. In brief, the PBMC layer was isolated as described above and was then washed and re suspended in DMEM medium (Lonza, Slough, UK) supplemented with 200 U/ml penicillin/streptomycin antibiotics (Invitrogen, Paisley, UK) and 2 mM L-glutamine (Invitrogen, Paisley, UK). Serum was separated from blood using standard methods and heat-inactivated at 56 C. for 20 min before use. Monocytes were isolated from PBMCs via positive selection using CD14 microbeads (MACS, Miltenyi Biotec) according to manufacturer's instructions. PBMCs were incubated with MicroBeads conjugated to monoclonal anti-human CD14 antibodies. Cells were then washed and run through an LS column in a magnetic field causing the CD14.sup.+ cells to be retained in the column and the unlabelled cells to run through. The CD14.sup.+ cells were then eluted and resuspended in supplemented DMEM containing 10% donor-specific serum, for determination of cell count and viability. Monocytes were then plated out at a density of 1.210.sup.5 cells/well in an 8-well glass based imaging dish (Ibidi, Munich, Germany) and incubated at 37, 5% CO.sub.2 for 7 days. Cells were used in imaging experiments on day 7. Immediately prior to phagocytosis experiments, supplemented DMEM was replaced with pre-warmed supplemented CO.sub.2-independent media (Gibco, Invitrogen, Paisley, UK) containing 1 M LysoTracker Red DND-99 (Invitrogen, Paisley, UK). LysoTracker Red is a fluorescent dye that stains acidic compartments in live cells, enabling tracking of these cells during phagocytosis and phagolysosome maturation.
(89) Preparation of J774.1 Mouse Macrophage Cell Line
(90) J774.1 macrophages (ECACC, HPA, Salisbury, UK) were maintained in tissue culture flasks in DMEM medium (Lonza, Slough, UK) supplemented with 10% (v/v) FCS (Biosera, Ringmer, UK), 200 U/ml penicillin/streptomycin antibiotics (Invitrogen, Paisley, UK) and 2 mM L-glutamine (Invitrogen, Paisley, UK) and incubated at 37 C., 5% CO.sub.2. For phagocytosis assays, macrophages were seeded in 300 l supplemented DMEM at a density of 110.sup.5 cells/well in an 8-well glass based imaging dish (Ibidi, Munich, Germany) and incubated overnight at 37 C., 5% CO.sub.2. Immediately prior to phagocytosis experiments, supplemented DMEM was replaced with 300 l pre-warmed supplemented CO.sub.2-independent media (Gibco, Invitrogen, Paisley, UK) containing 1 M LysoTracker Red DND-99 (Invitrogen, Paisley, UK).
(91) Preparation of Fluorescein Isothiocyanate (FITC)-Stained C. albicans
(92) C. albicans colonies were grown in YPD medium and incubated at 30 C., 200 rpm overnight. Live C. albicans cells were stained for 10 min at room temperature in the dark with 1 mg/ml FITC (Sigma, Dorset, UK) in 0.05 M carbonate-bicarbonate buffer (pH 9.6) (BDH Chemicals, VWR International, Leicestershire, UK). Following the 10 min incubation, in phagocytosis assays using C. albicans FITC-labelled yeast, the cells were washed three times in 1PBS to remove any residual FITC and finally re-suspended in 1PBS or 1PBS containing purified anti-Candida mAb at 1-50 g/ml. For assays where pre-germinated C. albicans was to be added to immune cells, cells were washed and re-suspended in supplemented CO.sub.2-independent media with or without anti-Candida mAb at 1-50 g/ml and incubated at 37 C. with gentle shaking for 45 min.
(93) Live Cell Video Microscopy Phagocytosis Assays
(94) Phagocytosis assays were performed using our standard protocol with modifications (42, 43, 54). Following pre-incubation with/without anti-Candida mAb, live FITC-stained wild type C. albicans (CAI4-CIp10) yeast or hyphal cells were added to LysoTracker Red DND-99-stained J774.1 murine macrophages or human monocyte-derived macrophages in an 8-well glass based imaging dish (Ibidi) at a multiplicity of infection (MOI) of 3. Video microscopy was performed using an UltraVIEW VoX spinning disk confocal microscope (Nikon, Surrey, UK) in a 37 C. chamber and images were captured at 1 min intervals over a 3 h period. At least three independent experiments were performed for each antibody and at least 2 videos were analysed from each experiment using Volocity 6.3 imaging analysis software (Improvision, PerkinElmer, Coventry, UK). Twenty five macrophages were selected at random from each experiment and analysed individually at 1 min intervals over a 3 h period. Measurements taken included: C. albicans uptakedefined as the number of C. albicans cells taken up by an individual phagocyte over the 3 h period; C. albicans rate of engulfmentdefined as the time point at which cell-cell contact was established until the time point at which C. albicans was fully engulfed (a fungal cell was considered to have been fully ingested when its FITC-fluorescent signal was lost, indicating that the fungal cell was now inside the phagocyte and not merely bound to the phagocyte cell surface) and finally Volocity 6.3 imaging analysis software was used to measure the distance travelled, directionality and velocity of macrophages at 1 min intervals during the first hour of the assay which provided a detailed overview of macrophage migration towards C. albicans cells.
(95) Mean values and standard deviations were calculated. One- or two-way ANOVA followed by Bonferroni multiple comparison tests or unpaired, two-tailed t tests were used to determine statistical significance.
(96) Systemic Candidiasis Infection Model
(97) A well-established three-day model of disseminated candidiasis was employed to assess the efficacy of anti-Candida mAbs in vivo (44, 52). On day 0, 3.210.sup.5 C. albicans SC5314 yeast cells were pre-incubated at RI with 7.5 mg/kg purified recombinant anti-Candida mAb for 60 min to allow binding of the antibody to the Candida cell surface before administration intravenously via the lateral tail vein. Assessment of disease progression was carried out by observation and weighing on successive days from day 0 up to and including day 3, at which point the animals were culled and the kidneys harvested for analysis of fungal burden. Fungal burdens were quantitated by homogenising the organ, and plating out serial dilutions on Sabouraud dextrose agar plates (1% mycological peptone (w/v), 4% glucose (w/v), 2% agar (w/v)) before incubation at 35 C. overnight. Colonies were counted the next day and fungal burden expressed as log CFU per gram of infected organ. An overall disease outcome score devised from the combination of 3-day weight loss and kidney burden data was also generated to assess disease progression.
(98) Enzymatic Modification of Candida albicans Cell Wall
(99) For proteinase K treatment, single colonies of Candida were inoculated into 10 ml YPD medium and incubated at 30 C., 200 rpm overnight. Cultures were diluted in milliQ water and then adhered on poly-L-lysine coated glass slides. To induce filamentation, cells were incubated in pre-warmed RPMI+10% FCS at 37 C. for 90 min-2 h. Slides were washed with DPBS and cells were treated with 50 g/ml proteinase K at 37 C. for 1 h. For Endo-H and zymolyase 20T treatments, C. albicans overnight yeast cells were washed and resuspended in DPBS. Filamentous cells were induced as above. Cells were washed in DPBS and resuspended in Glycobuffer and Endoglycosidase H (10 U/l; NEB) or Buffer S and Zymolyase 20T (50 U/g wet cells; MPBIO) at 37 C. for 2 h. Cells were then washed in DPBS and fixed with 4% paraformaldehyde, washed and blocked with 1.5% normal goat serum (Life Technologies) before staining with an anti-Candida mAb at 1 g/ml for 1 h at room temperature. After 3 washes with DPBS, cells were stained with Alexa Fluor 488 goat anti-human IgG antibody (Life Technologies) at a 1:400 dilution and incubated at room temperature for 1 h prior to imaging in 3D on an UltraVIEW VoX spinning disk confocal microscope (Nikon, Surrey, UK).
(100) Preparation of Human Monocyte-Derived Macrophages
(101) Human macrophages were derived from monocytes isolated from the blood of healthy volunteers. PBMCs were resuspended in Dulbecco's Modified Eagle's Medium (DMEM) (Lonza, Slough, UK) supplemented with 200 U/ml penicillin/streptomycin antibiotics (Invitrogen, Paisley, UK) and 2 mM L-glutamine (Invitrogen, Paisley, UK). Serum isolated from blood was heat inactivated for 20 min at 56 C. PBMCs were seeded at 610.sup.5 in 300 l/well supplemented DMEM medium containing 10% autologous human serum, onto an 8-well glass based imaging dish (Ibidi, Munich, Germany) and incubated at 37 C. with 5% CO.sub.2 for 1 h 45 min to facilitate monocyte adherence to the glass surface. Floating lymphocytes in the supernatant were aspirated and the same volume of fresh pre-warmed supplemented DMEM containing 10% autologous human serum added to the well. Cells were incubated at 37 C., 5% CO.sub.2 for 7 days with media changed on days 3 and 6. Cells were used in imaging experiments on day 7. Supplemented DMEM was replaced with pre-warmed supplemented CO.sub.2-independent media containing 1 M LysoTracker Red DND-99 (Invitrogen) immediately prior to phagocytosis experiments.
(102) Counterimmunoelectrophoresis
(103) Agar gels were prepared (Veronal buffer+0.5% (w/v) purified agar+0.5% (w/v) LSA agarose+0.05% (w/v) sodium azide, pH 8.2) and wells were cut out using a cutter. Into one column of wells, 10 l of neat anti-Candida mAb was added. The same volume of antigen (crude C. albicans yeast or hyphal preparation (following glass bead disruption of cells and 1 min centrifugation at 13000 rpm to generate disrupted cell wall/glass bead slurry and cell supernatant antigenic preparations)) was added to the second column of wells and gels were placed into an electrophoresis tank containing veronal buffer. Gels were oriented so that the antibody wells were lined up alongside the anode and the antigen wells alongside the cathode due to antibody migration towards the cathode via electroendosmosis and antigen migration towards the anode due to lower isoelectric points than the buffer pH. The gels were run at 100V for 90 min before removal and immersion in saline-trisodium citrate overnight. The following day the gels were rinsed with water and covered with moistened filter paper and left to dry in an oven for 2 h. Once dried, the filter paper was moistened and removed and the gels put back into the oven for a further 15 min to dry completely. Gels were then immersed in Buffalo black solution (0.05% (v/v) Buffalo black, 50% (v/v) distilled water, 40% (v/v) methylated spirit, 10% (v/v) acetic acid) for 10 min before destaining in destaining solution (45% (v/v) industrial methylated spirits, 10% (v/v) acetic acid, 45% (v/v) distilled water) for 10 min. Gels were then dried and examined for the formation of precipitin lines. The results are shown in
(104) High-Pressure Freezing (HPF) of Samples for Immunogold Labelling of C. albicans Cells with Anti-Candida mAbs for Transmission Electron Microscopy (TEM).
(105) C. albicans yeast and hyphal cell samples were prepared by high-pressure freezing using an EMPACT2 high-pressure freezer and rapid transport system (Leica Microsystems Ltd., Milton Keynes, United Kingdom). Using a Leica EMAFS2, cells were freeze-substituted in substitution reagent (1% (w/v) OsO4 in acetone) before embedding in Spurr resin and polymerizing at 60 C. for 48 h. A Diatome diamond knife on a Leica UC6 ultramicrotome was used to cut ultrathin sections which were then mounted onto nickel grids. Sections on nickel grids were blocked in blocking buffer (PBS+1% (w/v) BSA and 0.5% (v/v) Tween20) for 20 min before incubation in incubation buffer (PBS+0.1% (w/v) BSA) for 5 min3. Sections were then incubated with anti-Candida mAb (5 g/ml) for 90 min before incubation in incubation buffer for 5 min a total of 6 times. mAb binding was detected by incubation with Protein A gold 10 nm conjugate (Aurion) (diluted 1:40 in incubation buffer) for 60 min before another six 5 min washes in incubation buffer followed by three 5 min washes in PBS and three 5 min washes in water. Sections were then stained with uranyl acetate for 1 min before three 2 min washes in water and then left to dry. TEM images were taken using a JEM-1400 Plus using an AMT UltraVUE camera. The results are shown in
(106) TABLE-US-00002 TABLE S1 Clinical isolates and strains Strain name Genotype Reference CA14 + Clp10 ura3::imm434/ura3::imm434 Brand et al. 2004 (NGY152) RPS1/rps1::URA3 hyr1 hyr1::hisG/hyr1: Bailey et al. 1996 hisG-URA-3-hisG hyr1 + HYR1 hyr1::hisG/hyr1::hisG/ Belmonte RPS1/rps1::HYR1 (unpublished) tup1 tup1::hisG/tup1:: Fonzi & Irwin 1993 hisG-URA3-hisG C. albicans Clinical isolate Gillum et al. 1984 SC5314 C. glabrata Clinical isolate Odds et al. 2007 SCS71182B C. tropicalis Clinical isolate Clinical isolate from AM2005/0546 Aberdeen C. lusitaniae Clinical isolate Odds et al. 2007 SCS211362H C. krusei Clinical isolate Odds et al. 2007 SCS71987M C. parapsilosis Clinical isolate Rudek 1978 ATCC22019 C. dubliniensis Clinical isolate Moran et al. 1998 CD36 A. fumigatus Clinical isolate Netea et al. 2003 V05-27 C. auris Clinical isolate Satoh et al. 2009 CBS 109131 C. haemulonii Clinical isolate Khan et al. 2007 CBS 51491 C. neoformans H99 mating type Nielsen et al. 2003 KN99 C. gattii R265 Clinical isolate Fyfe et al. 2002 P. carinii Isolated from rat lung tissue M167-6 M. dermatis CBS Sugita et al. 2002 CBS 9169 M. circinelloides CBS Li et al. 2011 CBS 277.49
(107) TABLE-US-00003 TABLES2 RecombinantHyr1proteinaminoacidsequence. Theleadersequenceisunderlinedandthe6xHistagisinitalics, andisfollowedbythelinkerG.Hyr1protein aminoacids63-350makeuptheremainderofthesequence. Recombinantprotein Aminoacidsequence antigenname (aminoacids63-350) SEQIDNO: RecombinantHyr1N- METDTLLLWVLLLWVPGSTGGSGHHHHHHG 1 terminusfragment EVEKGASLFIKSDNGPVLALNVALSTLVRP VINNGVISLNSKSSTSFSNFDIGGSSFTNN GEIYLASSGLVKSTAYLYAREWTNNGLIVA YQNQKAAGNIAFGTAYQTITNNGQICLRHQ DFVPATKIKGTGCVTADEDTWIKLGNTILS VEPTHNFYLKDSKSSLIVHAVSSNQTFTVH GFGNGNKLGLTLPLTGNRDHFRFEYYPDTG ILQLRAAALPQYFKIGKGYDSKLFRIVNSR GLKNAVTYDGPVPNNEIPAVCLIPCTNGPS APESESDLNTPTTSSIGT
(108) TABLE-US-00004 TABLE S3 Purified recombinant human IgG1 mAbs generated using the single B cell technology. Antibody Yield (mg) Target AB-120 12 Hyr1 protein AB-121 28.5 Hyr1 protein AB-122 67.9 Hyr1 protein AB-123 67.3 Hyr1 protein AB-124 38.9 Hyr1 protein AB-118 7.5 C. albicans whole cell AB-119 13.5 C. albicans whole cell AB-126 60.9 C. albicans whole cell AB-127 24.5 C. albicans whole cell AB-129 2.3 C. albicans whole cell AB-130 1.1 C. albicans whole cell AB-131 24.1 C. albicans whole cell AB-132 9.3 C. albicans whole cell AB-133 19 C. albicans whole cell AB-134 7.7 C. albicans whole cell AB-135 16.5 C. albicans whole cell AB-139 12.2 C. albicans whole cell AB-140 19.5 C. albicans whole cell
(109) TABLE-US-00005 TABLEVH SEQ AB VH ID name VHFW1 CDR1 VHFW2 VHCDR2 VHFW3 VHCDR3 VHFW4 NO: 06- VH3 QVTLKESGGGLVQPG RTY WVRQDPG RLDEVGRLT RFTISRDNAKNILYLQMN DLSGSADY WGQGTLV 2 AB- GSLRLSCVASGFTF WMH KGLVWVS SYADSVNG SLRAEDTGVYYCAR TVSS 119 06- VH3 EVQLVESGGGLVQPG SNY WVRQVPG RINEDGSVT RFTISRDNAKNTLYLQM DLCGERDD WGQGTLV 3 AB- GSLRLSCSASQFIL WVH EGLVWVS SYADSVKG NSLRVDDTAVYYCVR SVSS 118 06- VH1 EVQLVQSGGGLVQPG TSY WVRQAPG VITGNVGTS RFTISRDNSKKTVSLQM TRYDFSSGYY WGQGTLV 4 AB- GSLGLSCAASGFIF AMT KGLEWVS YYADSVKG NSLRAEDTAIYYCVK FDD SVSS 120 06- VH3 EVQLVESGGILVQPG SDY WVRQAPG NIKQDGSEK RVTISRDNAQNSVFLQM DGYTFGPATT WGRGTLV 5 AB- GSLRLSCAASGFTF WMN KGLEWVA YYVDSLRG HSLSVEDTAVYYCAR ELDH SVSS 121 06- VH3 EVQLVQSGGGLAQPG DDF WVRQPPG GLTINNGGSI RFTISRDNAKNSLFLQM GLSGGTMAPF WGQGTMV 6 AB- RSLRLSCAASGFGF AMH KGLEWVS DYAGSVRG NSLRAEDTALYYCAK DI SVSS 122 06- VH3 EVQLLESGGGVVQPG SNY WVRQAPG VVWFDGSY RFTISRDNSKSTLYLQM PIMTSAFDI WGPGTMV 7 AB- RSLRLSCAASGFTF GMH KGLEWVA KYYTDSVKG NSLRAEDTAVYYCVS SVSS 123 06- VH3 EVQLVESGGGVVQPG SNY WVRQAPG VVWLDGSY RFTISRDNSKSTLYLQM PIMTSAFDI WGPGTMV 8 AB- RSLRLSCAASGFTF GMH KGLEWVA KYYTGSVKG NSLRAEDTAAYYCVS TVSS 124 06- VH3 EVQLVESGGGLAQPG AGN WVRQAPG AIGGSDDRT RFTISRDKSKNTLSLQM DIWRWAFDY WGQGTLV 9 AB- GSLRLSCEASGFHL AMA KGLEWVA DYADSVKG NSLRVEDTAVYYCAK SVSS 126 06- VH3 EVQLVESGGGLVNPG SNY WVRQAPG SISRSGDYIY RSTISRDNAKNSLFLQM DWGRLGYCSS WGQGTRV 10 AB- GSLRLSCAASGFTF AMN KGLEWVS YADSLKG NSLRAEDSAVYYCAR NNCPDAFDV SVSS 127 06- VH3 QVQLVESGGGLVQPG SNY WVRQVPG RINEDGSVT RFTISRDNAKNTLYLQM DLCGERDD WGQGTLV 11 AB- GSLRLSCSASQFIL WVH EGLVWVS SYADSVKG NSLRVDDTAVYYCVR TVSS 129 06- VH3 QLQLQESGGGLVQPG SNY WVRQVPG RINEDGSVT RFTISRDNAKNTLYLQM DLCWERDD WGQGTLV 12 AB- 3GSLRLSCSASQFIL WVH EGLVWVS SYADSVKG NSLRVDDTAVYYCVR SVSS 130 06- VH3 QVQLVQSGGGVVQPG KISI WVRQAPG AMSYDGFSK RLTISRDSSTNTLYLEMN EAYTSGRAGC WGQGVLV 13 AB- GSLRLSCAASPFTF LH KGLEWVS YYADSVKG SLRFEDTALYFCAR FNP SVSS 131 06- VH3 QVLKESGGGVVQPGG ETSI WVRQAPG AMSYDGFSK RLTISRDSSTNTLYLEMN EAYTSGRAGC WGQGVLV 14 AB- SLRLSCAASPFTF LH KGLEWVS YYADSVKG SLRFEDTALYFCAR FDP SVSS 132 06- VH3 EVQLVESGGGLVQPG NTY WVRQAPG RINEDGTTIS RFTISRDNAENTLYLQM DFTGPFDS WGQGTLV 15 AB- GSLRVSCAASGFTL WMH KGLVWVS YADSVRG HSLRAEDTGVYYCAR SVSS 133 06- VH3 QLQLQESGGGLVQPG SSH WVRQAPG SISISGGDTF RFTIFRDNSKNTVYLQM ETSPNDY WGQGTLV 16 AB- GSLRLSCVVSGFTF AMS KGLEWVS YADSVRG NSLRAEDTAVYYCAT SVSS 134 06- VH3 EVQLVETGGGLVQPG SSH WVRQAPG SISISGGDTF RFTIFRDNSKNTVYLQM ETSPNDY WGQGTLV 17 AB- GSLRLSCVVSGFTF AMS KGLEWVS YADSVRG NSLRAEDTAVYYCAT TVSS 135 06- VH3 EVQLVESGGGLVQPG NTY WVRQAPG RINEDGTTIS RFTISRDNAENTLYLQM DFTGPFDS WGQGTLV 18 AB- GSLRVSCAASGFTL WMH KGLVWVS YADSVRG HSLRAEDTGVYYCAR SVSS 139 06- VH3 EVQLVESGGGLVQPG NTY WVRQAPG RINEDGTTIS RFTISRDNAENTLYLQM DFTGPFDS WGQGTLV 19 AB- GSLRVSCAASGFTL WMH KGLVWVS YADSVRG HSLRAEDTGVYYCAR SVSS 140
(110) TABLE-US-00006 TABLEVL SEQ AB VL ID name VLFW1 VLCDR1 VLFW2 CDR2 VLFW3 VLCDR3 VLFW4 NO: 06-AB- VK2 DVVLTQSPLFLPVT RSSQSLLHS WYLQKPGQS SVFN GVPDRFSGSGSGTDFTL MQALEPPYT FGQGTKLE 20 119 PGEPASISC RGHTSLH PHLLIY RAS KISRVEAEDVGVYYC IK 06-AB- VK2 DIVMTQSPLSLPVT RSSQSLLHR WYLQKPGQS LGSN GVPDRFSGSGSGTDFTL MQGLQTPY FGQGTKLE 21 118 PGEAASISC NGKTFFA PQILIY RAS KISRVEAEDVGIYYC T IK 06-AB- VK1 DIVMTQSPSSVSAS RASQGISRW WYQQKPGEA AASS GVPSRFSGSGSGTDFTL QQANSFPIT FGQGTRL 22 120 VGDKVTITC LA PELLIY LQS TISSLQPEDFATYYC QIK 06-AB- VL3 QLVLTQPPSVSVSP SGDELRNKY WYQQKSGQS QDNN GIPERFSGSQSGDTATLT QAWVSQTL FGGGTKLT 23 121 GQTASITC TS PVLVIY RPS ISGTQAVDEADYYC V VL 06-AB- VL3 QAGLTQPPSVSVA GGNNIGSKH WYQQKPGQA DDSD GVPERFSGSNSGNTATL QVWDRSSD FGGGTRLT 24 122 PGQTATIPC VH PVAVVY RPS TISSVEAGDEADYYC HFWL VL 06-AB- VL2 QLVLTQPPSASGS TGTSSDVGG WYQHHPGKA EVSQ GVPDRFSGSKSGNTASL SSYAGSVVL FGGGTKLT 25 123 PGQSVTISC SNFVS PKLMIY RPS TVSGLQADDEADYYC VL 06-AB- VL2 QLVLTQPPSASGS TGTSSDVGG WYQHHPGKA EVSQ GVPDRFSGSKSGNTASL SSYAGSVVL FGGGTKLT 26 124 PGQSVTISC SNFVS PKLMIY RPS TVSGLQADDEADYYC VL 06-AB- VK3 DIVMTQSPATLSLS WASQYINTY WYQHKPGQA DASK GIPARFSGSGSGTDFTLT QQGSNWPL FGQGTRL 27 126 PGERATLSC VN PRLLIY RAT ISSLEPEDFAVYYC T EIK 06-AB- VK1 EIVMTQSPSFVSAS RASQDISNW WYQQKPGKA ASSN GVPSRFSGSGSGTDFAL QQENSFPY FGQGTKLE 28 127 VGDRVTITC LV PKLLIY LQS TIISLQPEDFATYYC T IK 06-AB- VK2 VIWMTQSPLSLPVT RSSQSLLHR WYLQKPGQS LGSN GVPDRFSGSGSGTDFTL MQGLQTPY FGQGTKLE 29 129 PGEAASISC NGRTFFA PQILIY RAF KISRVEAEDVGIYYC T IK 06-AB- VK2 VIWMTQSPLSLPVT RSSQSLLHR WYLQKPGQS LGSN GVPDRFSGSGSGTDFTL MQGLQTPY FGQGTKLE 30 130 PGEAASISC NGRTFFA PQILIY RAF KISRVEAEDVGIYYC T IK 06-AB- VK1 DIVMTQTPSTQSAS RASQSISIWL WYQQKPGKA DAST GVPSRFSGSGSGTEFTL QRYNDYPP FGPGTKVE 31 131 VGDRVTITC A PKLLIH LES TISSLQPDDSATYYC T IK 06-AB- VK1 EIVMTQSPSTQSAS RASQSISIWL WYQQKPGKA DAST GVPSRFSGSGSGTEFTL QRYNDYPP FGPGTKVE 32 132 VGDRVTITC A PKLLIH LES TISSLQPDDSATYYC T IK 06-AB- VL1 QSVLTQPPSVSGT SGSNSNAG WYQQVPGTA KNNQ GVPDRFSGSKSGTSASL IVWDGSLSG FGTGTKVT 33 133 PGQRVTISC RDYVS PKLLIY RPS AISGLRSEDDGDYYC YV VL 06-AB- VL7 SYELTQPSSLTVSP GLSSGAVTS WFQQKPGQA DTSR WTPARFSGSLLGGKAAL LLACNGACV FGGGTKLT 34 134 GGTVTLTC GHYPY PKTLIF KHS TLSGAQPEDDADYYC VL 06-AB- VL7 SYELTQPSSLTVSP GLSSGAVTS WFQQKPGQA DTSR WTPARFSGSLLGGKAAL LLACNGACV FGGGTKLT 35 135 GGTVTLTC GHYPY PKTLIF KHS TLSGAQPEDDADYYC VL 06-AB- VL1 QSVLTQPPSVSGT SGSNSNVG WYQQVPGTA KNNR GVPDRFSGSKSGTSASL IVWDGSLSG FGTGTKVT 36 139 PGQRVTISC RDYVS PKLLIY RPS AISGLRSEDDGDYYC YV VL 06-AB- VL1 QLVLTQPPSVSGT SGSNSNVG WYQQVPGTA KNNQ GVPDRFSGSKSGTSASL IVWDGSLSG FGTGTKVT 37 140 PGQRVTISC RDYVS PKLLIY RPS AISGLRSEDDGDYYC YV VL
Antibody Sequences and Seq ID No.s
(111) TABLE-US-00007 TABLEA AntibodyAB119 06-AB- SEQ 119 Sequence IDNO: VHFW1 QVTLKESGGGLVQPGGSLRLSCVASGFTF 38 VHCDR1 RTYVVMH 39 VHFW2 WVRQDPGKGLVWVS 40 VHCDR2 RLDEVGRLTSYADSVNG 41 VHFW3 RFTISRDNAKNILYLQMNSLRAEDTGVYYCAR 42 VHCDR3 DLSGSADY 43 VHFW4 WGQGTLVTVSS 44 VLFW1 DVVLTQSPLFLPVTPGEPASISC 45 VLCDR1 RSSQSLLHSRGHTSLH 46 VLFW2 WYLQKPGQSPHLLIY 47 VLCDR2 SVFNRAS 48 VLFW3 GVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC 49 VLCDR3 MQALEPPYT 50 VLFW4 FGQGTKLEIK 51
(112) TABLE-US-00008 TABLEB AntibodyAB118 06-AB- SEQ 118 Sequence IDNO: VHFW1 EVQLVESGGGLVQPGGSLRLSCSASQFIL 52 VHCDR1 SNYWVH 53 VHFW2 WVRQVPGEGLVWVS 54 VHCDR2 RINEDGSVTSYADSVKG 55 VHFW3 RFTISRDNAKNTLYLQMNSLRVDDTAVYYCVR 56 VHCDR3 DLCGERDD 57 VHFW4 WGQGTLVSVSS 58 VLFW1 DIVMTQSPLSLPVTPGEAASISC 59 VLCDR1 RSSQSLLHRNGKTFFA 60 VLFW2 WYLQKPGQSPQILIY 61 VLCDR2 LGSNRAS 62 VLFW3 GVPDRFSGSGSGTDFTLKISRVEAEDVGIYYC 63 VLCDR3 MQGLQTPYT 64 VLFW4 FGQGTKLEIK 65
(113) TABLE-US-00009 TABLEC AntibodyAB120 06-AB- SEQ 120 Sequence IDNO: VHFW1 EVQLVQSGGGLVQPGGSLGLSCAASGFIF 66 VHCDR1 TSYAMT 67 VHFW2 WVRQAPGKGLEWVS 68 VHCDR2 VITGNVGTSYYADSVKG 69 VHFW3 RFTISRDNSKKTVSLQMNSLRAEDTAIYYCVK 70 VHCDR3 TRYDFSSGYYFDD 71 VHFW4 WGQGTLVSVSS 72 VLFW1 DIVMTQSPSSVSASVGDKVTITC 73 VLCDR1 RASQGISRWLA 74 VLFW2 WYQQKPGEAPELLIY 75 VLCDR2 AASSLQS 76 VLFW3 GVPSRFSGSGSGTDFTLTISSLQPEDFATYYC 77 VLCDR3 QQANSFPIT 78 VLFW4 FGQGTRLQIK 79
(114) TABLE-US-00010 TABLED AntibodyAB121 06-AB- SEQ 121 Sequence IDNO: VHFW1 EVQLVESGGTLVQPGGSLRLSCAASGFTF 80 VHCDR1 SDYWMN 81 VHFW2 WVRQAPGKGLEWVA 82 VHCDR2 NIKQDGSEKYYVDSLRG 83 VHFW3 RVTISRDNAQNSVFLQMHSLSVEDTAVYYCAR 84 VHCDR3 DGYTFGPATTELDH 85 VHFW4 WGRGTLVSVSS 86 VLFW1 QLVLTQPPSVSVSPGQTASITC 87 VLCDR1 SGDELRNKYTS 88 VLFW2 WYQQKSGQSPVLVIY 89 VLCDR2 QDNNRPS 90 VLFW3 GIPERFSGSQSGDTATLTISGTQAVDEADYYC 91 VLCDR3 QAWVSQTLV 92 VLFW4 FGGGTKLTVL 93
(115) TABLE-US-00011 TABLEE AntibodyAB122 06-AB- SEQ 122 Sequence IDNO: VHFW1 EVQLVQSGGGLAQPGRSLRLSCAASGFGF 94 VHCDR1 DDFAMH 95 VHFW2 WVRQPPGKGLEWVS 96 VHCDR2 GLTWNGGSIDYAGSVRG 97 VHFW3 RFTISRDNAKNSLFLQMNSLRAEDTALYYCAK 98 VHCDR3 GLSGGTMAPFDI 99 VHFW4 WGQGTMVSVSS 100 VLFW1 QAGLTQPPSVSVAPGQTATIPC 101 VLCDR1 GGNNIGSKHVH 102 VLFW2 WYQQKPGQAPVAVVY 103 VLCDR2 DDSDRPS 104 VLFW3 GVPERFSGSNSGNTATLTISSVEAGDEADYYC 105 VLCDR3 QVWDRSSDHFWL 106 VLFW4 FGGGTRLTVL 107
(116) TABLE-US-00012 TABLEF AntibodyAB123 06-AB- SEQID 123 Sequence NO: VHFW1 EVQLLESGGGVVQPGRS 108 LRLSCAASGFTF VHCDR1 SNYGMH 109 VHFW2 WVRQAPGKGLEWVA 110 VHCDR2 VVWFDGSYKYYTDSVKG 111 VHFW3 RFTISRDNSKSTLYLQM 112 NSLRAEDTAVYYCVS VHCDR3 PIMTSAFDI 113 VHFW4 WGPGTMVSVSS 114 VLFW1 QLVLTQPPSASGSPGQS 115 VTISC VLCDR1 TGTSSDVGGSNFVS 116 VLFW2 WYQHHPGKAPKLMIY 117 VLCDR2 EVSQRPS 118 VLFW3 GVPDRFSGSKSGNTASL 119 TVSGLQADDEADYYC VLCDR3 SSYAGSVVL 120 VLFW4 FGGGTKLTVL 121
(117) TABLE-US-00013 TABLEG AntibodyAB124 06-AB- SEQID 124 Sequence NO: VHFW1 EVQLVESGGGVVQPGRS 122 LRLSCAASGFTF VHCDR1 SNYGMH 123 VHFW2 WVRQAPGKGLEWVA 124 VHCDR2 VVWLDGSYKYYTGSVKG 125 VHFW3 RFTISRDNSKSTLYLQM 126 NSLRAEDTAAYYCVS VHCDR3 PIMTSAFDI 127 VHFW4 WGPGTMVTVSS 128 VLFW1 QLVLTQPPSASGSPGQS 129 VTISC VLCDR1 TGTSSDVGGSNFVS 130 VLFW2 WYQHHPGKAPKLMIY 131 VLCDR2 EVSQRPS 132 VLFW3 GVPDRFSGSKSGNTASL 133 TVSGLQADDEADYYC VLCDR3 SSYAGSVVL 134 VLFW4 FGGGTKLTVL 135
(118) TABLE-US-00014 TABLEH AntibodyAB126 06-AB- SEQID 126 Sequence NO: VHFW1 EVQLVESGGGLAQPGGS 136 LRLSCEASGFHL VHCDR1 AGNAMA 137 VHFW2 WVRQAPGKGLEWVA 138 VHCDR2 AIGGSDDRTDYADSVKG 139 VHFW3 RFTISRDKSKNTLSLQM 140 NSLRVEDTAVYYCAK VHCDR3 DIWRWAFDY 141 VHFW4 WGQGTLVSVSS 142 VLFW1 DIVMTQSPATLSLSPGE 143 RATLSC VLCDR1 WASQYINTYVN 144 VLFW2 WYQHKPGQAPRLLIY 145 VLCDR2 DASKRAT 146 VLFW3 GIPARFSGSGSGTDFTL 147 TISSLEPEDFAVYYC VLCDR3 QQGSNWPLT 148 VLFW4 FGQGTRLEIK 149
(119) TABLE-US-00015 TABLEI AntibodyAB127 06-AB- SEQID 127 Sequence NO: VHFW1 EVQLVESGGGLVNPGGS 150 LRLSCAASGFTF VHCDR1 SNYAMN 151 VHFW2 WVRQAPGKGLEWVS 152 VHCDR2 SISRSGDYIYYADSLKG 153 VHFW3 RSTISRDNAKNSLFLQM 154 NSLRAEDSAVYYCAR VHCDR3 DWGRLGYCSSNNCPDAF 155 DV VHFW4 WGQGTRVSVSS 156 VLFW1 EIVMTQSPSFVSASVGD 157 RVTITC VLCDR1 RASQDISNWLV 158 VLFW2 WYQQKPGKAPKLLIY 159 VLCDR2 ASSNLQS 160 VLFW3 GVPSRFSGSGSGTDFAL 161 TIISLQPEDFATYYC VLCDR3 QQENSFPYT 162 VLFW4 FGQGTKLEIK 163
(120) TABLE-US-00016 TABLEJ AntibodyAB129 06-AB- SEQID 129 Sequence NO: VHFW1 QVQLVESGGGLVQPGGS 164 LRLSCSASQFIL VHCDR1 SNYWVH 165 VHFW2 WVRQVPGEGLVWVS 166 VHCDR2 RINEDGSVTSYADSVKG 167 VHFW3 RFTISRDNAKNTLYLQM 168 NSLRVDDTAVYYCVR VHCDR3 DLCGERDD 169 VHFW4 WGQGTLVTVSS 170 VLFW1 VIWMTQSPLSLPVTPGE 171 AASISC VLCDR1 RSSQSLLHRNGRTFFA 172 VLFW2 WYLQKPGQSPQILIY 173 VLCDR2 LGSNRAF 174 VLFW3 GVPDRFSGSGSGTDFTL 175 KISRVEAEDVGIYYC VLCDR3 MQGLQTPYT 176 VLFW4 FGQGTKLEIK 177
(121) TABLE-US-00017 TABLEK AntibodyAB130 06-AB- SEQID 130 Sequence NO: VHFW1 QLQLQESGGGLVQPGGS 178 LRLSCSASQFIL VHCDR1 SNYWVH 179 VHFW2 WVRQVPGEGLVWVS 180 VHCDR2 RINEDGSVTSYADSVKG 181 VHFW3 RFTISRDNAKNTLYLQM 182 NSLRVDDTAVYYCVR VHCDR3 DLCWERDD 183 VHFW4 WGQGTLVSVSS 184 VLFW1 VIWMTQSPLSLPVTPGE 185 AASISC VLCDR1 RSSQSLLHRNGRTFFA 186 VLFW2 WYLQKPGQSPQILIY 187 VLCDR2 LGSNRAF 188 VLFW3 GVPDRFSGSGSGTDFTL 189 KISRVEAEDVGIYYC VLCDR3 MQGLQTPYT 190 VLFW4 FGQGTKLEIK 191
(122) TABLE-US-00018 TABLEL AntibodyAB131 06-AB- SEQID 131 Sequence NO: VHFW1 QVQLVQSGGGVVQPGGS 192 LRLSCAASPFTF VHCDR1 KTSILH 193 VHFW2 WVRQAPGKGLEWVS 194 VHCDR2 AMSYDGFSKYYADSVKG 195 VHFW3 RLTISRDSSTNTLYLEM 196 NSLRFEDTALYFCAR VHCDR3 EAYTSGRAGCFNP 197 VHFW4 WGQGVLVSVSS 198 VLFW1 DIVMTQTPSTQSASVGD 199 RVTITC VLCDR1 RASQSISIWLA 200 VLFW2 WYQQKPGKAPKLLIH 201 VLCDR2 DASTLES 202 VLFW3 GVPSRFSGSGSGTEFTL 203 TISSLQPDDSATYYC VLCDR3 QRYNDYPPT 204 VLFW4 FGPGTKVEIK 205
(123) TABLE-US-00019 TABLEM AntibodyAB132 06-AB- SEQID 132 Sequence NO: VHFW1 QVLKESGGGVVQPGGSL 206 RLSCAASPFTF VHCDR1 ETSILH 207 VHFW2 WVRQAPGKGLEWVS 208 VHCDR2 AMSYDGFSKYYADSVKG 209 VHFW3 RLTISRDSSTNTLYLEM 210 NSLRFEDTALYFCAR VHCDR3 EAYTSGRAGCFDP 211 VHFW4 WGQGVLVSVSS 212 VLFW1 EIVMTQSPSTQSASVGD 213 RVTITC VLCDR1 RASQSISIWLA 214 VLFW2 WYQQKPGKAPKLLIH 215 VLCDR2 DASTLES 216 VLFW3 GVPSRFSGSGSGTEFTL 217 TISSLQPDDSATYYC VLCDR3 QRYNDYPPT 218 VLFW4 FGPGTKVEIK 219
(124) TABLE-US-00020 TABLEN AntibodyAB133 06-AB- SEQID 133 Sequence NO: VHFW1 EVQLVESGGGLVQPGGS 220 LRVSCAASGFTL VHCDR1 NTYWMH 221 VHFW2 WVRQAPGKGLVWVS 222 VHCDR2 RINEDGTTISYADSVRG 223 VHFW3 RFTISRDNAENTLYLQM 224 HSLRAEDTGVYYCAR VHCDR3 DFTGPFDS 225 VHFW4 WGQGTLVSVSS 226 VLFW1 QSVLTQPPSVSGTPGQR 227 VTISC VLCDR1 SGSNSNAGRDYVS 228 VLFW2 WYQQVPGTAPKLLIY 229 VLCDR2 KNNQRPS 230 VLFW3 GVPDRFSGSKSGTSASL 231 AISGLRSEDDGDYYC VLCDR3 IVWDGSLSGYV 232 VLFW4 FGTGTKVTVL 233
(125) TABLE-US-00021 TABLEO AntibodyAB134 06-AB- SEQID 134 Sequence NO: VHFW1 QLQLQESGGGLVQPGGS 234 LRLSCVVSGFTF VHCDR1 SSHAMS 235 VHFW2 WVRQAPGKGLEWVS 236 VHCDR2 SISISGGDTFYADSVRG 237 VHFW3 RFTIFRDNSKNTVYLQM 238 NSLRAEDTAVYYCAT VHCDR3 ETSPNDY 239 VHFW4 WGQGTLVSVSS 240 VLFW1 SYELTQPSSLTVSPGGT 241 VTLTC VLCDR1 GLSSGAVTSGHYPY 242 VLFW2 WFQQKPGQAPKTLIF 243 VLCDR2 DTSRKHS 244 VLFW3 WTPARFSGSLLGGKAAL 245 TLSGAQPEDDADYYC VLCDR3 LLACNGACV 246 VLFW4 FGGGTKLTVL 247
(126) TABLE-US-00022 TABLEP AntibodyAB135 06-AB- SEQID 135 Sequence NO: VHFW1 EVQLVETGGGLVQPGGS 248 LRLSCVVSGFTF VHCDR1 SSHAMS 249 VHFW2 WVRQAPGKGLEWVS 250 VHCDR2 SISISGGDTFYADSVRG 251 VHFW3 RFTIFRDNSKNTVYLQM 252 NSLRAEDTAVYYCAT VHCDR3 ETSPNDY 253 VHFW4 WGQGTLVTVSS 254 VLFW1 SYELTQPSSLTVSPGGT 255 VTLTC VLCDR1 GLSSGAVTSGHYPY 256 VLFW2 WFQQKPGQAPKTLIF 257 VLCDR2 DTSRKHS 258 VLFW3 WTPARFSGSLLGGKAAL 259 TLSGAQPEDDADYYC VLCDR3 LLACNGACV 260 VLFW4 FGGGTKLTVL 261
(127) TABLE-US-00023 TABLEQ AntibodyAB139 06-AB- SEQID 139 Sequence NO: VHFW1 EVQLVESGGGLVQPGGS 262 LRVSCAASGFTL VHCDR1 NTYWMH 263 VHFW2 WVRQAPGKGLVWVS 264 VHCDR2 RINEDGTTISYADSVRG 265 VHFW3 RFTISRDNAENTLYLQM 266 HSLRAEDTGVYYCAR VHCDR3 DFTGPFDS 267 VHFW4 WGQGTLVSVSS 268 VLFW1 QSVLTQPPSVSGTPGQR 269 VTISC VLCDR1 SGSNSNVGRDYVS 270 VLFW2 WYQQVPGTAPKLLIY 271 VLCDR2 KNNRRPS 272 VLFW3 GVPDRFSGSKSGTSASL 273 AISGLRSEDDGDYYC VLCDR3 IVWDGSLSGYV 274 VLFW4 FGTGTKVTVL 275
(128) TABLE-US-00024 TABLER AntibodyAB140 06-AB- SEQID 140 Sequence NO: VHFW1 EVQLVESGGGLVQPGGS 276 LRVSCAASGFTL VHCDR1 NTYWMH 277 VHFW2 WVRQAPGKGLVWVS 278 VHCDR2 RINEDGTTISYADSVRG 279 VHFW3 RFTISRDNAENTLYLQM 280 HSLRAEDTGVYYCAR VHCDR3 DFTGPFDS 281 VHFW4 WGQGTLVSVSS 282 VLFW1 QLVLTQPPSVSGTPGQR 283 VTISC VLCDR1 SGSNSNVGRDYVS 284 VLFW2 WYQQVPGTAPKLLIY 285 VLCDR2 KNNQRPS 286 VLFW3 GVPDRFSGSKSGTSASL 287 AISGLRSEDDGDYYC VLCDR3 IVWDGSLSGYV 288 VLFW4 FGTGTKVTVL 289
(129) TABLE-US-00025 TABLEVH-CDR3-mod (Variant SEQ of Lightor ID SEQID HeavyCDR3 NO: NO:) 06-AB-118.HeavyC101A DLAGERDD 290 57 06-AB-118.HeavyC101S DLSGERDD 291 57 06-AB-127.HeavyWY DWGRLGYWSSNNY 292 155 PDAFDV 06-AB-127.HeavyAA DWGRLGYASSNNA 293 155 PDAFDV 06-AB-131.HeavyW EAYTSGRAGWFNP 294 197 06-AB-131.HeavyA EAYTSGRAGAFNP 295 197 06-AB-132.HeavyW EAYTSGRAGWFDP 296 211 06-AB-132.HeavyA EAYTSGRAGAFDP 297 211 06-AB-129.HeavyW DLWGERDD 298 169 06-AB-129.HeavyA DLAGERDD 299 169
(130) TABLE-US-00026 TABLEVL-CDR3-mod 06-AB-134.LightYW LLAYNGAWV 300 246 06-AB-134.LightAA LLAANGAAV 301 246 06-AB-135.LightYW LLAYNGAWV 302 260 06-AB-135.LightAA LLAANGAAV 303 260
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