COMPOSITIONS AND METHODS OF USING SAME FOR REDUCING RESISTANCE TO MOSQUITO LARVICIDES
20170051285 ยท 2017-02-23
Inventors
- Nitzan PALDI (MOSHAV BAR GIORA, IL)
- Humberto Freire BONCRISTIANI JUNIOR (Odenton, MD, US)
- Eyal MAORI (Rishon-LeZion, IL)
- Avital WEISS (Karkur, IL)
- Emerson Soares BERNARDES (Sao Paulo, BR)
Cpc classification
A01K2227/706
HUMAN NECESSITIES
C12N15/8245
CHEMISTRY; METALLURGY
C12N15/113
CHEMISTRY; METALLURGY
C12N15/1138
CHEMISTRY; METALLURGY
C12N15/827
CHEMISTRY; METALLURGY
C12N2320/32
CHEMISTRY; METALLURGY
A01K2217/07
HUMAN NECESSITIES
C12N15/8218
CHEMISTRY; METALLURGY
C12N15/8261
CHEMISTRY; METALLURGY
C12N2320/35
CHEMISTRY; METALLURGY
C12N15/8243
CHEMISTRY; METALLURGY
A01N25/002
HUMAN NECESSITIES
C12N15/8271
CHEMISTRY; METALLURGY
International classification
C12N15/113
CHEMISTRY; METALLURGY
Abstract
A method of enhancing larvicide susceptibility in a mosquito larva is provided. The method comprising introducing into the mosquito larva an isolated nucleic acid agent comprising a nucleic acid sequence which specifically reduces the expression of at least one larvicide resistance gene product of the larva, thereby enhancing larvicide susceptibility in said mosquito larva.
Claims
1. A method of enhancing larvicide susceptibility in a mosquito larva, the method comprising introducing into the mosquito larva an isolated nucleic acid agent comprising a nucleic acid sequence which specifically reduces the expression of at least one larvicide resistance gene product of the larva, thereby enhancing larvicide susceptibility in said mosquito larva.
2. A method of enhancing larvicide and/or adulticide susceptibility in a mosquito, the method comprising introducing into a mosquito larva an isolated nucleic acid agent comprising a nucleic acid sequence which specifically reduces the expression of at least one larvicide and/or adulticide resistance gene product of the mosquito, thereby enhancing larvicide and/or adulticide susceptibility in the mosquito when a pupa or an adult mosquito.
3. The method of claim 1, wherein said larvicide resistance gene is selected from the group consisting of SEQ ID NOs: 1-111, 114-165, 193-202.
4. The method of claim 1, wherein said larvicide resistance gene is selected from the genes in Tables 1A-B.
5. The method of claim 1, wherein said enhanced larvicide susceptibility is enhanced as compared to identical mosquito larva not receiving said isolated nucleic acid agent and optionally wherein said enhanced susceptibility is expressed as reduced LD.sub.50 for said larvicide.
6. (canceled)
7. The method of claim 1, wherein said mosquito is a mosquito capable of transmitting a disease to a mammalian organism.
8-9. (canceled)
10. The method of claim 1, wherein the mosquito larvae are of the genus Aedes.
11-13. (canceled)
14. The method of claim 1, wherein said introducing comprises feeding, spraying, soaking or injecting.
15. The method of claim 1, wherein said introducing comprises soaking said larva with said isolated nucleic acid agent for about 12-48 hours.
16. (canceled)
17. The method of claim 1, wherein said introducing comprises feeding said larva with said isolated nucleic acid agent for about 48-96 hours.
18. The method of claim 1, wherein said mosquito larva carries an infection selected from the group consisting of a viral infection, a nematode infection, a protozoa infection and a bacterial infection.
19. An isolated nucleic acid agent comprising a nucleic acid sequence which specifically reduces the expression of at least one mosquito larvicide resistance gene product of a mosquito larva.
20. The isolated nucleic acid agent of claim 19, wherein said larvicide resistance gene is selected from the group consisting of the genes in Tables 1A-B.
21. The isolated nucleic acid agent of claim 19, wherein said larvicide resistance gene is selected from the group consisting of AAEL013279 (Seq ID NO: 16); AAEL001626 (Seq ID NO: 28); AAEL005772 (Seq ID NO: 40); AAEL012357 (Seq ID NO: 112), AAEL014445 (Seq ID NO: 102), AAEL008297 (Seq ID NO: 193), AAEL010379 (Seq ID NO: 194), AAEL007823 (Seq ID NO: 195), AAEL007698 (Seq ID NO: 196), AAEL005112 (Seq ID NO: 197), AAEL003446 (Seq ID NO: 198), AAEL007815 (Seq ID NO: 199), AAEL002202 (Seq ID NO: 200), AAEL009124 (Seq ID NO: 201) and Cytochrome p450 (CYP9J26) (Seq ID NO: 202).
22. The isolated nucleic acid agent of claim 19, wherein said larvicide resistance gene is selected from the group consisting of AAEL008297 (Seq ID NO: 193), AAEL010379 (Seq ID NO: 194), AAEL007823 (Seq ID NO: 195), AAEL007698 (Seq ID NO: 196), AAEL005112 (Seq ID NO: 197), AAEL003446 (Seq ID NO: 198), AAEL007815 (Seq ID NO: 199), AAEL002202 (Seq ID NO: 200), AAEL009124 (Seq ID NO: 201) and Cytochrome p450 (CYP9J26) (Seq ID NO: 202).
23. The isolated nucleic acid agent of claim 19, wherein said nucleic acid sequence reduces the expression of two mosquito larvicide resistance genes.
24. The isolated nucleic acid agent of claim 23, wherein said two mosquito larvicide resistance genes comprise a sodium channel gene and a P-glycoprotein gene.
25. A composition comprising at least one nucleic acid agent which specifically reduces the expression of two mosquito larvicide resistance genes.
26. The isolated nucleic acid agent of claim 24, wherein said larvicide resistance gene comprise a sodium channel gene as set forth in SEQ ID NO: 193 and a P-glycoprotein gene as set forth in SEQ ID NO: 194.
27. The isolated nucleic acid agent of claim 26, wherein said nucleic acid agent is a dsRNA comprising SEQ ID NO: 187 and a dsRNA SEQ ID NO: 184.
28. The isolated nucleic acid agent of claim 19, wherein said isolated nucleic acid agent is a dsRNA.
29. (canceled)
30. The isolated nucleic acid agent of claim 28, wherein said dsRNA is effected at a dose of 0.001-1 g/L for soaking or at a dose of 1 pg to 10 g/larvae for feeding.
31. The isolated nucleic acid agent of claim 28, wherein said dsRNA is naked dsRNA.
32. The isolated nucleic acid agent of claim 28, wherein said dsRNA comprises a carrier.
33. The isolated nucleic acid agent of claim 32, wherein said carrier comprises a Polyethylenimine (PEI).
34-38. (canceled)
39. A nucleic acid construct comprising a nucleic acid sequence encoding the isolated nucleic acid agent of claim 19.
40. The nucleic acid construct of claim 39, further comprising a regulatory element active in plant cells.
41. A cell of a mosquito larva ingestible organism comprising the isolated nucleic acid agent of claim 19.
42. The cell of claim 41, wherein said mosquito-larva-ingestible organism is an algae.
43. (canceled)
44. A composition comprising the cell of claim 41 and an insecticidally acceptable carrier.
45. (canceled)
46. The composition of claim 44, wherein said composition is formulated in a semi-solid form.
47. The composition of claim 46, wherein said semi-solid form comprises agarose.
48. The composition of claim 44, further comprising a mosquito larvicide and/or adulticide.
49-50. (canceled)
51. The composition of claim 44, further comprising mosquito larva feed.
52. The method of claim 1, wherein said isolated nucleic acid agent further comprises a cell penetrating agent.
53. A solution comprising the cell of claim 41 for soaking mosquito larvae.
54. A mosquito or mosquito larva comprising at least one exogenous isolated nucleic acid agent comprising a nucleic acid sequence which specifically reduces the expression of at least mosquito larvicide resistance gene product.
55-58. (canceled)
59. The method of claim 1, wherein said isolated nucleic acid agent is comprised in a cell.
60. The method of claim 2, wherein said isolated nucleic acid agent is comprised in a cell.
Description
BRIEF DESCRIPTION OF THE SEVERAL VIEWS OF THE DRAWINGS
[0085] Some embodiments of the invention are herein described, by way of example only, with reference to the accompanying drawings. With specific reference now to the drawings in detail, it is stressed that the particulars shown are by way of example and for purposes of illustrative discussion of embodiments of the invention. In this regard, the description taken with the drawings makes apparent to those skilled in the art how embodiments of the invention may be practiced.
[0086] In the drawings:
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DESCRIPTION OF SPECIFIC EMBODIMENTS OF THE INVENTION
[0107] The present invention, in some embodiments thereof, relates to isolated nucleic acid agents, and, more particularly, but not exclusively, to the use of same for enhancing susceptibility to larvicidal compounds in mosquito larvae and adults.
[0108] The principles and operation of the present invention may be better understood with reference to the drawings and accompanying descriptions.
[0109] Before explaining at least one embodiment of the invention in detail, it is to be understood that the invention is not necessarily limited in its application to the details set forth in the following description or exemplified by the Examples. The invention is capable of other embodiments or of being practiced or carried out in various ways. Also, it is to be understood that the phraseology and terminology employed herein is for the purpose of description and should not be regarded as limiting.
[0110] It is understood that any Sequence Identification Number (SEQ ID NO) disclosed in the instant application can refer to either a DNA sequence or a RNA sequence, depending on the context where that SEQ ID NO is mentioned, even if that SEQ ID NO is expressed only in a DNA sequence format or a RNA sequence format. For example, SEQ ID NO: 184 is expressed in a DNA sequence format (e.g., reciting T for thymine), but it can refer to either a DNA sequence that corresponds to an endo 1,4 beta gluconase nucleic acid sequence, or the RNA sequence of an RNA molecule nucleic acid sequence. Similarly, though some sequences are expressed in a RNA sequence format (e.g., reciting U for uracil), depending on the actual type of molecule being described, it can refer to either the sequence of a RNA molecule comprising a dsRNA, or the sequence of a DNA molecule that corresponds to the RNA sequence shown. In any event, both DNA and RNA molecules having the sequences disclosed with any substitutes are envisioned.
[0111] Mosquitoes pose an important threat to human and animal health. Mosquitoes are vectors for numerous pathogens, including viruses, bacteria, protozoa and nematodes. One method of controlling mosquito populations is directed at eliminating mosquito larvae, which are more vulnerable to eradication efforts than adult mosquitoes due to larvae being an aquatic, surface-dwelling stage of the mosquito life cycle, feeding predominately on algae.
[0112] However, due to the vast numbers and rapid turnover of arthropod populations, even effective insecticides, including larvicides and adulticides, create selection pressure for insecticide-resistant mosquito and mosquito larval phenotypes. Introduction of novel insecticides, larvicides and adulticides both, initiates the cycle of selection and development of resistance, with the inevitable impairment or even complete loss of lethality of the insecticide.
[0113] While reducing the present invention to practice, the present inventors have uncovered that feeding dsRNA to mosquito larvae, wherein the dsRNA specifically downregulates an expression of a mosquito gene, wherein a product of the mosquito gene participates in resistance of the larva, or adult mosquito to an larvicide insecticide, results in mosquito larvae and mosquitoes more susceptible to the lethal effects of the larvicide insecticide and eradication therewith, reducing the effective dosage and increasing the effective life expectancy of the larvicides, and reducing the need for frequent introduction of novel insecticides/larvicides.
[0114] Specifically, the present inventors have shown that soaking mosquito L1 or L3 larvae in dsRNA targeting specific genes (e.g. P-glycoprotein, sodium channel, Ago-3) or feeding the larvae with agarose cubes containing dsRNA efficiently decreases gene expression (
[0115] Moreover, the present inventors have illustrated that feeding mosquito larvae with dsRNA targeting specific genes for two to four days (via agarose cubes, until they reach pupa stage) with or without previous soaking with dsRNA for 24 hours (e.g. sodium channel, PgP, ago-3 and Cytochrome p450) efficiently decreases gene expression (
[0116] As is shown hereinbelow and in the Examples section which follows, the present inventors have uncovered that downregulating genes which are involved in larvicide resistance in a mosquito, e.g. genes responsible for enhanced esterase activity; enhanced glutatione-S-transferase activity; enhanced p450 monoxygenase activity, genes responsible for modification of acetylcholinesterase; modification of the GABA receptors; and modification of the sodium channels, can be effective in enhancing the mosquito larval and adult susceptibility to insecticides (larvicide/adulticides), and consequently reducing transmission of mosquito-borne pathogens to humans and animals.
[0117] Thus, according to one aspect of the present invention there is provided a method of enhancing larvicide susceptibility in a mosquito larva, the method comprising introducing into the mosquito larva an isolated nucleic acid agent comprising a nucleic acid sequence which specifically reduces the expression of at least one larvicide resistance gene product of the larva, thereby enhancing larvicide susceptibility in the mosquito larva.
[0118] As used herein the term enhancing susceptibility of a mosquito larva refers to increasing the sensitivity or reduction in tolerance of a mosquito larva to exposure to or any of the negative effects of a larvicide. Enhancing susceptibility can include, but is not limited to, reducing metabolic resistance mechanisms, reducing target site resistance mechanisms, enhancing penetration of the larvicide and reducing behavioural larvicide resistance mechanisms of the mosquito/larva. Accordingly, enhancing susceptibility of mosquitoes/larvae to larvicides reduces their damage to human health, economies, and well-being.
[0119] In some embodiments, enhanced susceptibility of the mosquito/mosquito larva to the larvicide/adulticide is a function of a reduced dosage requirement for toxicity or lethality of the larvicide, expressed as a reduction in the mean toxic dose (TD.sub.50) or mean lethal dose (LD.sub.50), that dose of the larvicide at which effective toxicity (TD) or death (LD) of 50% of a treated sample occurs. In some other embodiments, the enhanced susceptibility is a function of reduction in the exposure time to the larvicide required for toxic and/or lethal effects on the larva/mosquito. Additional and other mechanisms are conceived.
[0120] The term mosquito or mosquitoes as used herein refers to an insect of the family Culicidae. The mosquito of the invention may include an adult mosquito, a mosquito larva, a pupa or an egg thereof.
[0121] An adult mosquito is defined as any of slender, long-legged insect that has long proboscis and scales on most parts of the body. The adult females of many species of mosquitoes are blood-eating pests. In feeding on blood, adult female mosquitoes transmit harmful diseases to humans and other mammals.
[0122] A mosquito larvae is defined as any of an aquatic insect which does not comprise legs, comprises a distinct head bearing mouth brushes and antennae, a bulbous thorax that is wider than the head and abdomen, a posterior anal papillae and either a pair of respiratory openings (in the subfamily Anophelinae) or an elongate siphon (in the subfamily Culicinae) borne near the end of the abdomen.
[0123] Typically, a mosquito's life cycle includes four separate and distinct stages: egg, larva, pupa, and adult. Thus, a mosquito's life cycle begins when eggs are laid on a water surface (e.g. Culex, Culiseta, and Anopheles species) or on damp soil that is flooded by water (e.g. Aedes species). Most eggs hatch into larvae within 48 hours. The larvae live in the water feeding on microorganisms and organic matter and come to the surface to breathe. They shed their skin four times growing larger after each molting and on the fourth molt the larva changes into a pupa. The pupal stage is a resting, non-feeding stage of about two days. At this time the mosquito turns into an adult. When development is complete, the pupal skin splits and the mosquito emerges as an adult.
[0124] As used herein, the term larvicide or larvicidal activity refers to the ability of interfering with a mosquito life cycle resulting in an overall reduction in the mosquito population. The larvicidal composition acts (down-regulates gene expression) at the larval stage. The activity of the larvicidal composition may be manifested immediately (e.g., by affecting larval survival) or only at later stages, as described below. For example, the term larvicidal includes inhibition of a mosquito from progressing from one form to a more mature form, e.g., transition between various larval instars or transition from larva to pupa or pupa to adult. Further, the term larvicidal is intended to encompass, for example, anti-mosquito activity during all phases of a mosquito life cycle; thus, for example, the term includes larvicidal, ovicidal, and adulticidal activity, all of which stem from the activity at the larval stage.
[0125] It will be appreciated that a larvicide or larvicidal composition may also be effective in non-larval stages of the mosquito, and therefore may also be, for example, an adulticide or adulticidal composition. Thus, as used herein, the term larvicide encompasses both larva-specific larvicides, and non-larva-specific larvicides.
[0126] In addition the term may refer to rendering a mosquito at any stage, including adulthood, more susceptible to a pesticide as compared to the susceptibility of a mosquito of the same species and developmental stage which hasn't been treated with the larvicide.
[0127] According to one embodiment, the larvicide is selected from the group consisting of Temephos, Diflubenzuron, Methoprene, or a microbial larvicide such as Bacillus sphaericus or Bacillus thuringiensis israelensis.
[0128] According to one embodiment, the larvicide comprises an adulticide.
[0129] Exemplary adulticides include, but are not limited to, deltamethrin, malathion, naled, chlorpyrifos, permethrin, resmethrin or sumithrin.
[0130] As used herein, the term larvicidally effective is used to indicate an amount or concentration of a larvicide which is sufficient to reduce the number of mosquitoes in a geographic locus as compared to a corresponding geographic locus in the absence of the amount or concentration of the composition.
[0131] Thus the methods and compositions of some embodiments of the invention down-regulates a target larvicide resistance gene selected from the group consisting of genes:
[0132] (i) affecting larval survival when contacted with a larvicide;
[0133] (ii) interfering with metamorphosis of larval stage to adulthood contacted with a larvicide;
[0134] (iii) affecting susceptibility of an adult mosquito to an adulticide/insecticide.
[0135] As used herein the term affecting or interfering refers to a gene which plays a role in the above mentioned biological activity. According to a specific embodiment, the target gene is a non-redundant gene, that is, its activity is not compensated by another gene in a pathway. When needed, down-regulation of a plurality of genes (e.g., in a pathway) participating in at least one of the above-mentioned activities is contemplated (as further described hereinbelow). Alternatively, according to a specific embodiment, the plurality of target genes are from groups (i) and (ii), (i) and (iii), (ii) and (iii) or (i), (ii) and (iii).
[0136] According to one embodiment, the mosquitoes are of the sub-families Anophelinae and Culicinae. According to one embodiment, the mosquitoes are of the genus Culex, Culiseta, Anopheles and Aedes. Exemplary mosquitoes include, but are not limited to, Aedes species e.g. Aedes aegypti, Aedes albopictus, Aedes polynesiensis, Aedes australis, Aedes cantator, Aedes cinereus, Aedes rusticus, Aedes vexans; Anopheles species e.g. Anopheles gambiae, Anopheles freeborni, Anopheles arabiensis, Anopheles funestus, Anopheles gambiae Anopheles moucheti, Anopheles balabacensis, Anopheles baimaii, Anopheles culicifacies, Anopheles dirus, Anopheles latens, Anopheles leucosphyrus, Anopheles maculatus, Anopheles minimus, Anopheles fluviatilis s.l., Anopheles sundaicus Anopheles superpictus, Anopheles farauti, Anopheles punctulatus, Anopheles sergentii, Anopheles stephensi, Anopheles sinensis, Anopheles atroparvus, Anopheles pseudopunctipennis, Anopheles bellator and Anopheles cruzii; Culex species e.g. C. annulirostris, C. antennatus, C. jenseni, C. pipiens, C. pusillus, C. quinquefasciatus, C. rajah, C. restuans, C. salinarius, C. tarsalis, C. territans, C. theileri and C. tritaeniorhynchus; and Culiseta species e.g. Culiseta incidens, Culiseta impatiens, Culiseta inornata and Culiseta particeps.
[0137] According to one embodiment, the mosquitoes are capable of transmitting disease-causing pathogens. The pathogens transmitted by mosquitoes include viruses, protozoa, worms and bacteria.
[0138] Non-limiting examples of viral pathogens which may be transmitted by mosquitoes include the arbovirus pathogens such as Alphaviruses pathogens (e.g. Eastern Equine encephalitis virus, Western Equine encephalitis virus, Venezuelan Equine encephalitis virus, Ross River virus, Sindbis Virus and Chikungunya virus), Flavivirus pathogens (e.g. Japanese Encephalitis virus, Murray Valley Encephalitis virus, West Nile Fever virus, Yellow Fever virus, Dengue Fever virus, St. Louis encephalitis virus, and Tick-borne encephalitis virus), Bunyavirus pathogens (e.g. La Crosse Encephalitis virus, Rift Valley Fever virus, and Colorado Tick Fever virus) and Orbivirus (e.g. Bluetongue disease virus).
[0139] Non-limiting examples of worm pathogens which may be transmitted by mosquitoes include nematodes e.g. filarial nematodes such as Wuchereria bancrofti, Brugia malayi, Brugia pahangi, Brugia timori and heartworm (Dirofilaria immitis).
[0140] Non-limiting examples of bacterial pathogens which may be transmitted by mosquitoes include gram negative and gram positive bacteria including Yersinia pestis, Borellia spp, Rickettsia spp, and Erwinia carotovora.
[0141] Non-limiting examples of protozoa pathogens which may be transmitted by mosquitoes include the Malaria parasite of the genus Plasmodium e.g. Plasmodium falciparum, Plasmodium vivax, Plasmodium ovale, Plasmodium malariae, Plasmodium berghei, Plasmodium gallinaceum, and Plasmodium knowlesi.
[0142] A host may be any animal upon which the mosquito feeds and/or to which a mosquito is capable of transmitting a disease-causing pathogen. Non-limiting examples of hosts are mammals such as humans, domesticated pets (e.g. dogs and cats), wild animals (e.g. monkeys, rodents and wild cats), livestock animals (e.g. sheep, pigs, cattle, and horses), avians such as poultry (e.g. chickens, turkeys and ducks) and other animals such as crustaceans (e.g. prawns and lobsters), snakes and turtles.
[0143] According to one embodiment, the mosquito comprises a female mosquito being capable of transmitting a disease to a mammalian organism (e.g. an animal or human). According to another embodiment the female mosquito is pathogenically infected.
[0144] Non-limiting examples of mosquitoes and the pathogens which they transmit include species of the genus Anopheles (e.g. Anopheles gambiae) which transmit malaria parasites as well as microfilariae, arboviruses (including encephalitis viruses) and some species also transmit Wuchereria bancrofti; species of the genus Culex (e.g. C. pipiens) which transmit West Nile virus, filariasis, Japanese encephalitis, St. Louis encephalitis and avian malaria; species of the genus Aedes (e.g. Aedes aegypti, Aedes albopictus and Aedes polynesiensis) which transmit nematode worm pathogens (e.g. heartworm (Dirofilaria immitis)), arbovirus pathogens such as Alphaviruses pathogens that cause diseases such as Eastern Equine encephalitis, Western Equine encephalitis, Venezuelan equine encephalitis and Chikungunya disease; Flavivirus pathogens that cause diseases such as Japanese encephalitis, Murray Valley Encephalitis, West Nile fever, Yellow fever, Dengue fever, and Bunyavirus pathogens that cause diseases such as LaCrosse encephalitis, Rift Valley Fever, and Colorado tick fever.
[0145] According to one embodiment, pathogens that may be transmitted by Aedes aegypti are Dengue virus, Yellow fever virus, Chikungunya virus and heartworm (Dirofilaria immitis).
[0146] According to one embodiment, pathogens that may be transmitted by Aedes albopictus include West Nile Virus, Yellow Fever virus, St. Louis Encephalitis virus, Dengue virus, and Chikungunya fever virus.
[0147] According to one embodiment, pathogens that may be transmitted by Anopheles gambiae include malaria parasites of the genus Plasmodium such as, but not limited to, Plasmodium falciparum, Plasmodium vivax, Plasmodium ovale, Plasmodium malariae, Plasmodium berghei, Plasmodium gallinaceum, and Plasmodium knowlesi.
[0148] Enhancing susceptibility of a mosquito to a larvicide is achieved by downregulating an expression of at least one mosquito larvicide resistance gene.
[0149] As used herein, the term mosquito gene refers to any gene whose product is involved in larvicide tolerance and/or sensitivity. According to one embodiment, the mosquito gene is essential for an effect of the larvicide.
[0150] As used herein, the phrase gene product refers to an RNA molecule or a protein.
[0151] According to one embodiment, the mosquito gene product is one which is essential for the larvicide's effect upon encounter with the mosquito/larva. Downregulation of such a gene product would typically result in enhanced susceptibility, reduced tolerance and/or enhanced toxicity/lethality within the mosquito/larva.
[0152] Typically, larvicide, adulticide or insecticide resistance in the larva/mosquito results from changes in larvicide metabolism, changes in larvicide target site, barriers to penetration of the larvicide and alteration of behavior, often leading to reduced exposure to the larvicide. Best known are metabolic and target site resistance.
[0153] Thus, according to some embodiments, there is provided a method of enhancing larvicide susceptibility in a mosquito larva, the method comprising introducing into the mosquito larva an isolated nucleic acid agent comprising a nucleic acid sequence which specifically reduces the expression of at least one larvicide resistance gene product of the larva, thereby enhancing larvicide susceptibility in the mosquito larva.
[0154] It will be appreciated that introducing the agent into the mosquito larva can have an effect on later stages of mosquito life cyclesuch as pupa/adult, etc. Thus, introducing the nucleic acid agent of the present invention into a larva can effectively enhance susceptibility of, for example, a pupa or adult mosquito to larvicide and/or adulticide. Thus, according to some embodiments, there is provided a method of enhancing larvicide and/or adulticide susceptibility in a mosquito, the method comprising introducing into a mosquito larva an isolated nucleic acid agent comprising a nucleic acid sequence which specifically reduces the expression of at least one larvicide or adulticide resistance gene product of the mosquito, thereby enhancing larvicide or adulticide susceptibility in the adult when a pupa or an adult mosquito.
[0155] Metabolic resistance involves the sequestration, metabolism, and/or detoxification of the insecticide, largely through the overproduction of specific enzymes such as carboxylesterases (efficient against organophosphate and carbamate insecticides), glutathione-S-transferases or GSTs (efficient against organophosphates, organochlorine, and pyrethroid insecticides) and cytochrome P450-dependent monoxygenases (efficient against most insecticide types, frequently in conjunction with other enzymes). The overproduction of these enzymes may be achieved via gene amplification and/or gene expression via modifications in the promoter region or mutations in trans-acting regulatory genes. In addition, in some mosquito species, carboxylesterase resistance to the insecticide malathion has been associated with a qualitative change in the enzyme.
[0156] In contrast, target site resistance is achieved by point mutations that render the actual targets of an insecticide less sensitive to the active ingredient. Most insecticides developed to date are neurotoxic and are directed to either acetylcholinesterase, c-aminobutyric acid (GABA) receptors, or sodium channels. Acetylcholinesterase is the target of organophosphorous and carbamate insecticides, the GABA receptors are the main targets of cyclodiene (organochlorine) insecticides, and the sodium channels are the targets of pyrethroid and organochlorine insecticides. Mutations in all three of these can confer resistance.
[0157] Thus, according to one embodiment, the larvicide resistance gene product is associated with metabolic larvicide resistance, such as, but not limited to a carboxylesterase gene, a glutathione-S-transferase (or GST) gene and a cytochrome P450-dependent monoxygenase gene.
[0158] In another embodiment, the larvicide resistance gene product is associated with penetration larvicide resistance, such as, but not limited to a mosquito larva or mosquito cuticle-associated gene, such as, but not limited to, a chitin gene or a chitin metabolism gene.
[0159] In yet another embodiment, mosquito larvicide resistance gene products that may be downregulated according to another aspect of the present invention are target-site-related genes, including, but are not limited to enhancing the sensitivity of acetylcholinesterase, c-aminobutyric acid (GABA) receptors, or sodium channels to organophosphor and carbamate larvicides, cyclodiene (organochlorine) larvicides, and pyrethroid and organochlorine larvicides, respectively.
[0160] Tables 1A-B, below, provides a partial list of mosquito genes associated with larvicide resistance, which can be potential targets for reduction in expression by introducing the nucleic acid agent of the invention.
TABLE-US-00001 TABLE 1A Seq ID Gene Symbol Annotation Enzymes 1 AAEL012664 prolylcarboxypeptidase, putative 2 AAEL002909 lysosomal acid lipase, putative 3 AAEL005127 ribonuclease UK114, putative 4 AAEL012636 cytochrome b5, putative 5 AAEL010276 aminomethyltransferase 6 AAEL013640 lung carbonyl reductase 7 AAEL005416 oxidase/peroxidase 8 AAEL013499 prophenoloxidase 9 AAEL003716 ribonuclease UK114, putative 10 AAEL012579 aspartate aminotransferase 11 AAEL002600 serine protease 12 AAEL005610 mitochondrial ATP synthase b chain 13 AAEL006446 trehalose-6-phosphate synthase 14 AAEL008770 proteasome subunit beta type 15 AAEL001427 short-chain dehydrogenase 16 AAEL013279 peptidyl-prolyl cis-trans isomerase (cyclophilin) 17 AAEL009875 alanine aminotransferase 18 AAEL005793 AMP dependent ligase 19 AAEL007868 ubiquinol-cytochrome c reductase complex 14 kd protein 20 AAEL008072 NADH-plastoquinone oxidoreductase 21 AAEL009324 hydroxyacyl dehydrogenase 22 AAEL008217 serine-type enodpeptidase, 23 AAEL014944 cytochrome c oxidase polypeptide 24 AAEL010819 vacuolar ATP synthase subunit H 25 AAEL010500 glutathione-s-transferase theta, gst Transport 26 AAEL005929 ATP-binding cassette transporter 27 AAEL008381 oligopeptide transporter 28 AAEL001626 zinc/iron transporter 29 AAEL012702 ATP-binding cassette sub-family A member 3, putative others 30 AAEL015515 antibacterial peptide, putative 31 AAEL002295 leucine-rich transmembrane protein 32 AAEL009556 Niemann-Pick Type C-2, putative 33 AAEL005159 latent nuclear antigen, putative 34 AAEL007325 Mob3B protein, putative 35 AAEL000679 NEDD8, putative 36 AAEL009209 galactose-specific C-type lectin, putative 37 AAEL001826 odorant-binding protein 56a, putative 38 AAEL002961 Osiris, putative 39 AAEL006830 yellow protein precursor 40 AAEL005772 odorant-binding protein 99c, putative 41 AAEL002813 coupling factor, putative 42 AAEL011090 complement component 43 AAEL012230 flagellar protein, putative Hypothetical proteins 44 AAEL011252 conserved hypothetical protein 45 AAEL014506 conserved hypothetical protein 46 AAEL003216 conserved hypothetical protein 47 AAEL003241 conserved hypothetical protein 48 AAEL007507 conserved hypothetical protein 49 AAEL003064 conserved hypothetical protein 50 AAEL010678 conserved hypothetical protein 51 AAEL000269 conserved hypothetical protein 52 AAEL006053 conserved hypothetical protein 53 AAEL008750 conserved hypothetical protein 54 AAEL010128 conserved hypothetical protein 55 AAEL002898 conserved hypothetical protein 56 AAEL007631 conserved hypothetical protein 57 AAEL003479 conserved hypothetical protein 58 AAEL013777 conserved hypothetical protein 59 AAEL003428 conserved hypothetical protein 60 AAEL014529 conserved hypothetical protein 61 AAEL012645 conserved hypothetical protein 62 AAEL004809 conserved hypothetical protein 63 AAEL004343 conserved hypothetical protein 64 AAEL003160 conserved hypothetical protein 65 AAEL012357 conserved hypothetical protein 66 AAEL009009 conserved hypothetical protein 67 AAEL013793 conserved hypothetical protein 68 AAEL002623 conserved hypothetical protein 69 AAEL010163 conserved hypothetical protein 70 AAEL002449 conserved hypothetical protein 71 AAEL002302 conserved hypothetical protein 72 AAEL008039 conserved hypothetical protein 73 AAEL008073 conserved hypothetical protein 74 AAEL007444 conserved hypothetical protein 75 AAEL005171 conserved hypothetical protein 76 AAEL006771 conserved hypothetical protein 77 AAEL015140 conserved hypothetical protein 78 AAEL001851 conserved hypothetical protein 79 AAEL005558 conserved hypothetical protein 80 AAEL002933 conserved hypothetical protein 81 AAEL003225 conserved hypothetical protein 82 AAEL001692 conserved hypothetical protein 83 AAEL007592 conserved hypothetical protein 84 AAEL005457 conserved hypothetical protein 85 AAEL006494 conserved hypothetical protein 86 AAEL013780 conserved hypothetical protein 87 AAEL009257 conserved hypothetical protein 88 AAEL000445 conserved hypothetical protein 89 AAEL002955 conserved hypothetical protein 90 AAEL002875 conserved hypothetical protein 91 AAEL000304 conserved hypothetical protein 92 AAEL000792 conserved hypothetical protein 93 AAEL003936 conserved hypothetical protein 94 AAEL006686 conserved hypothetical protein 95 AAEL001677 conserved hypothetical protein 96 AAEL000419 conserved hypothetical protein 97 AAEL007648 conserved hypothetical protein 98 AAEL006270 conserved hypothetical protein 99 AAEL013377 conserved hypothetical protein 100 AAEL002619 conserved hypothetical protein 101 AAEL012866 conserved hypothetical protein 102 AAEL014445 conserved hypothetical protein 103 AAEL001065 conserved hypothetical protein 104 AAEL011333 conserved hypothetical protein 105 AAEL011078 conserved hypothetical protein 106 AAEL010315 conserved hypothetical protein 107 AAEL005270 conserved hypothetical protein 108 AAEL004449 conserved hypothetical protein 109 AAEL000896 conserved hypothetical protein 110 AAEL010724 conserved hypothetical protein 111 AAEL008802 conserved hypothetical protein
TABLE-US-00002 TABLE 1B SEQ ID NO Gene symbol Gene Name 114 AAEL000765 hexamerin 2 beta 115 AAEL000887 conserved hypothetical protein 116 AAEL000890 conserved hypothetical protein 117 AAEL001054 glutathione transferase 118 AAEL001807 cytochrome P450 119 AAEL002062 Betha Ftz transcription factor isoform A (nuclear receptor) 120 AAEL003102 glucosyl/glucuronosyl transferases 121 AAEL003286 alkaline phosphatase 122 AAEL003297 alkaline phosphatase 123 AAEL003317 alkaline phosphatase 124 AAEL003667 hypothetical protein 125 AAEL003986 conserved hypothetical protein 126 AAEL003986 conserved hypothetical protein 127 AAEL003986 conserved hypothetical protein 128 AAEL003986 conserved hypothetical protein 129 AAEL004088 aldo-keto reductase 130 AAEL004406 conserved hypothetical protein 131 AAEL004846 conserved hypothetical protein 132 AAEL005156 hypothetical protein 133 AAEL005546 conserved hypothetical protein 134 AAEL006627 serine-type enodpeptidase, 135 AAEL007383 secreted ferritin G subunit precursor, putative 136 AAEL007383 secreted ferritin G subunit precursor, putative 137 AAEL007383 secreted ferritin G subunit precursor, putative 138 AAEL008045 hexamerin 2 beta 139 AAEL008598 conserved hypothetical protein 140 AAEL008968 conserved hypothetical protein 141 AAEL009580 conserved hypothetical protein 142 AAEL009764 xaa-pro aminopeptidase 143 AAEL009773 geminin, putative 144 AAEL009953 Niemann-Pick Type C-2, putative 145 AAEL009954 Niemann-Pick Type C-2, putative 146 AAEL009956 conserved hypothetical protein 147 AAEL010382 aldehyde oxidase 148 AAEL011112 alcohol dehydrogenase 149 AAEL011169 hexamerin 2 beta 150 AAEL012344 lipase 1 precursor 151 AAEL012434 conserved hypothetical protein 152 AAEL012526 hypothetical protein 153 AAEL012736 ribosomal protein L15 154 AAEL012828 conserved hypothetical protein 155 AAEL013757 hexamerin 2 beta 156 AAEL013759 hexamerin 2 beta 157 AAEL013837 conserved hypothetical protein 158 AAEL014591 filamin, putative 159 AAEL014727 conserved hypothetical protein 160 AAEL014893 cytochrome P450 161 AAEL014936 sarcosine dehydrogenase 162 AAEL015119 cuticle protein, putative 163 AAEL017209 hypothetical protein 164 AAEL017453 hypothetical protein 165 AAEL017508 hypothetical protein 193 AAEL008297 194 AAEL010379 195 AAEL007823 196 AAEL007698 197 AAEL005112 198 AAEL003446 199 AAEL007815 200 AAEL002202 201 AAEL009124 202 Cytochrome p450 (CYP9J26) JF924909.1 XM_001649047.2
[0161] The present teachings contemplate the targeting of homologs and orthologs according to the selected mosquito species.
[0162] The term species homolog or homolog as used herein refers to one that has an amino acid or nucleotide homology with a given gene in a given species (e.g. at least 60% homology, at least 70% homology, at least 80%, at least 85%, at least 90%, or at least 95% homology). A method for obtaining such a species homolog is well known to one of skill in the art.
[0163] The term ortholog (also called orthologous genes) refers to genes in different species derived from a common ancestry (due to speciation). For example, in the case of the hemoglobin gene family having multigene structure, human and mouse -hemoglobin genes are orthologs, while the human -hemoglobin gene and the human -hemoglobin gene are paralogs (genes arising from gene duplication). Further, comparing human Cystatin A (a cysteine protease inhibitor) and rice Oryzacystatin, only three short amino acid motives are conserved which are believed to be critical for interaction with a protease of target, and the other portions have very low amino acid similarity. However, both belong to the superfamily of cystatin genes, and have genes of common origin, and thus, not only the cases where there are high amino acid homology, but also in cases where there are only a few common amino acids in a particular region of these protein structure, these may be called orthologs to each other. As such, orthologs usually play a similar role to that in the original species in another species.
[0164] In some embodiments, the larvicide resistance gene products include, but are not limited to sequences of AAEL013279 (Seq ID NO: 16); AAEL001626 (Seq ID NO: 28); AAEL005772 (Seq ID NO: 40); AAEL012357 (Seq ID NO: 112) and AAEL014445 (Seq ID NO: 102). According to one embodiment, the larvicide resistance gene product that is downregulated comprises any one of the nucleic acid sequences as set forth in SEQ ID NO: 1-111 (or orthologs thereof, dependent on the target of interest).
[0165] According to one embodiment, the larvicide resistance gene is selected from the group consisting of AAEL008297 (Seq ID NO: 193), AAEL010379 (Seq ID NO: 194), AAEL007823 (Seq ID NO: 195), AAEL007698 (Seq ID NO: 196), AAEL005112 (Seq ID NO: 197), AAEL003446 (Seq ID NO: 198), AAEL007815 (Seq ID NO: 199), AAEL002202 (Seq ID NO: 200), AAEL009124 (Seq ID NO: 201) and Cytochrome p450 (CYP9J26) (Seq ID NO: 202).
[0166] It will be appreciated that more than one gene may be targeted in order to optimize or maximize the larvicide susceptibility of the mosquitoes/larvae.
[0167] Thus, a combination of two or more silencing agents e.g., dsRNAs, for a single target gene or distinct genes is contemplated according to the present teachings.
[0168] Thus, for example, a combination of dsRNA targeting the genes AAEL002202 and AAEL003446 is contemplated herein. Alternatively, a combination of dsRNA targeting the genes AAEL005112 and AAEL007815 is contemplated. Alternatively, a combination of dsRNA targeting the genes AAEL008297 and AAEL010379 is contemplated. When referring to targeting together it is understood that the larvae may be administered two silencing agents, e.g., dsRNAs, concomitantly or subsequently to one another (e.g. hours or days apart).
[0169] As used herein, the term downregulates an expression or downregulating expression refers to causing, directly or indirectly, reduction in the transcription of a desired gene, reduction in the amount, stability or translatability of transcription products (e.g. RNA) of the gene, and/or reduction in translation of the polypeptide(s) encoded by the desired gene.
[0170] Downregulating expression of a larvicide or adulticide resistance gene product of a mosquito can be monitored, for example, by direct detection of gene transcripts (for example, by PCR), by detection of polypeptide(s) encoded by the gene (for example, by Western blot or immunoprecipitation), by detection of biological activity of polypeptides encode by the gene (for example, catalytic activity, ligand binding, and the like), or by monitoring changes in the mosquitoes (for example, reduced LD.sub.50 or TD.sub.50 of a larvicide on the larva/mosquito etc). Additionally or alternatively downregulating expression of a pathogen resistance gene product may be monitored by measuring larvicide levels (e.g. molecules or larvicide activity etc.) in the mosquitoes as compared to wild type (i.e. control) mosquitoes/larvae not treated by the agents of the invention.
[0171] Thus, according to some aspects of the invention there is provided an isolated nucleic acid agent comprising a nucleic acid sequence which specifically downregulates the expression of at least one mosquito larvicide resistance gene product.
[0172] According to one embodiment, the agent is a polynucleotide agent, such as an RNA silencing agent.
[0173] As used herein, the term RNA silencing agent refers to an RNA which is capable of inhibiting or silencing the expression of a target gene. In certain embodiments, the RNA silencing agent is capable of preventing complete processing (e.g, the full translation and/or expression) of an mRNA molecule through a post-transcriptional silencing mechanism. RNA silencing agents include noncoding RNA molecules, for example RNA duplexes comprising paired strands, as well as precursor RNAs from which such small non-coding RNAs can be generated. Exemplary RNA silencing agents include dsRNAs such as siRNAs, miRNAs and shRNAs. In one embodiment, the RNA silencing agent is capable of inducing RNA interference. In another embodiment, the RNA silencing agent is capable of mediating translational repression.
[0174] In some embodiments of the invention, the nucleic acid agent is a double stranded RNA (dsRNA). As used herein the term dsRNA relates to two strands of anti-parallel polyribonucleic acids held together by base pairing. The two strands can be of identical length or of different lengths provided there is enough sequence homology between the two strands that a double stranded structure is formed with at least 80%, 90%, 95% or 100% complementarity over the entire length. According to an embodiment of the invention, there are no overhangs for the dsRNA molecule. According to another embodiment of the invention, the dsRNA molecule comprises overhangs. According to other embodiments, the strands are aligned such that there are at least 1, 2, or 3 bases at the end of the strands which do not align (i.e., for which no complementary bases occur in the opposing strand) such that an overhang of 1, 2 or 3 residues occurs at one or both ends of the duplex when strands are annealed.
[0175] It will be noted that the dsRNA can be defined in terms of the nucleic acid sequence of the DNA encoding the target gene transcript, and it is understood that a dsRNA sequence corresponding to the coding sequence of a gene comprises an RNA complement of the gene's coding sequence, or other sequence of the gene which is transcribed into RNA.
[0176] The inhibitory RNA sequence can be greater than 90% identical, or even 100% identical, to the portion of the target gene transcript. Alternatively, the duplex region of the RNA may be defined functionally as a nucleotide sequence that is capable of hybridizing with a portion of the target gene transcript under stringent conditions (e.g., 400 mM NaCl, 40 mM PIPES pH 6.4, 1 mM EDTA, 60 degrees C. hybridization for 12-16 hours; followed by washing). The length of the double-stranded nucleotide sequences complementary to the target gene transcript may be at least about 18, 19, 21, 25, 50, 100, 200, 300, 400, 491, 500, 550, 600, 650, 700, 750, 800, 900, 1000 or more bases. In some embodiments of the invention, the length of the double-stranded nucleotide sequence is approximately from about 18 to about 1000, about 18 to about 750, about 18 to about 510, about 18 to about 400, about 18 to about 250 nucleotides in length.
[0177] The term corresponds to as used herein means a polynucleotide sequence homologous to all or a portion of a reference polynucleotide sequence. In contradistinction, the term complementary to is used herein to mean that the complementary sequence is homologous to all or a portion of a reference polynucleotide sequence. For example, the nucleotide sequence TATAC corresponds to a reference sequence TATAC and is complementary to a reference sequence GTATA.
[0178] The present teachings relate to various lengths of dsRNA, whereby the shorter version i.e., x is shorter or equals 50 bp (e.g., 17-50), is referred to as siRNA or miRNA. Longer dsRNA molecules of 51-600 are referred to herein as dsRNA, which can be further processed for siRNA molecules. According to some embodiments, the nucleic acid sequence of the dsRNA is greater than 15 base pairs in length. According to yet other embodiments, the nucleic acid sequence of the dsRNA is 19-25 base pairs in length, 30-100 base pairs in length, 100-250 base pairs in length or 100-500 base pairs in length. According to still other embodiments, the dsRNA is 500-800 base pairs in length, 700-800 base pairs in length, 300-600 base pairs in length, 350-500 base pairs in length or 400-450 base pairs in length. In some embodiments, the dsRNA is 400 base pairs in length. In some embodiments, the dsRNA is 750 base pairs in length.
[0179] The term siRNA refers to small inhibitory RNA duplexes (generally between 17-30 basepairs, but also longer e.g., 31-50 bp) that induce the RNA interference (RNAi) pathway. Typically, siRNAs are chemically synthesized as 21mers with a central 19 bp duplex region and symmetric 2-base 3-overhangs on the termini, although it has been recently described that chemically synthesized RNA duplexes of 25-30 base length can have as much as a 100-fold increase in potency compared with 21mers at the same location. The observed increased potency obtained using longer RNAs in triggering RNAi is theorized to result from providing Dicer with a substrate (27mer) instead of a product (21mer) and that this improves the rate or efficiency of entry of the siRNA duplex into RISC.
[0180] It has been found that position of the 3-overhang influences potency of a siRNA and asymmetric duplexes having a 3-overhang on the antisense strand are generally more potent than those with the 3-overhang on the sense strand (Rose et al., 2005). This can be attributed to asymmetrical strand loading into RISC, as the opposite efficacy patterns are observed when targeting the antisense transcript.
[0181] The strands of a double-stranded interfering RNA (e.g., a siRNA) may be connected to form a hairpin or stem-loop structure (e.g., a shRNA). Thus, as mentioned the RNA silencing agent of some embodiments of the invention may also be a short hairpin RNA (shRNA).
[0182] The term shRNA, as used herein, refers to an RNA agent having a stem-loop structure, comprising a first and second region of complementary sequence, the degree of complementarity and orientation of the regions being sufficient such that base pairing occurs between the regions, the first and second regions being joined by a loop region, the loop resulting from a lack of base pairing between nucleotides (or nucleotide analogs) within the loop region. The number of nucleotides in the loop is a number between and including 3 to 23, or 5 to 15, or 7 to 13, or 4 to 9, or 9 to 11. Some of the nucleotides in the loop can be involved in base-pair interactions with other nucleotides in the loop. Examples of oligonucleotide sequences that can be used to form the loop include 5-UUCAAGAGA-3 (Brummelkamp, T. R. et al. (2002) Science 296: 550, SEQ ID NO: 1) and 5-UUUGUGUAG-3 (Castanotto, D. et al. (2002) RNA 8:1454, SEQ ID NO: 2). It will be recognized by one of skill in the art that the resulting single chain oligonucleotide forms a stem-loop or hairpin structure comprising a double-stranded region capable of interacting with the RNAi machinery.
[0183] As used herein, the phrase microRNA (also referred to herein interchangeably as miRNA or miR) or a precursor thereof refers to a microRNA (miRNA) molecule acting as a post-transcriptional regulator. Typically, the miRNA molecules are RNA molecules of about 20 to 22 nucleotides in length which can be loaded into a RISC complex and which direct the cleavage of another RNA molecule, wherein the other RNA molecule comprises a nucleotide sequence essentially complementary to the nucleotide sequence of the miRNA molecule.
[0184] Typically, a miRNA molecule is processed from a pre-miRNA or as used herein a precursor of a pre-miRNA molecule by proteins, such as DCL proteins, present in any plant cell and loaded onto a RISC complex where it can guide the cleavage of the target RNA molecules.
[0185] Pre-microRNA molecules are typically processed from pri-microRNA molecules (primary transcripts). The single stranded RNA segments flanking the pre-microRNA are important for processing of the pri-miRNA into the pre-miRNA. The cleavage site appears to be determined by the distance from the stem-ssRNA junction (Han et al. 2006, Cell 125, 887-901, 887-901).
[0186] As used herein, a pre-miRNA molecule is an RNA molecule of about 100 to about 200 nucleotides, preferably about 100 to about 130 nucleotides which can adopt a secondary structure comprising an imperfect double stranded RNA stem and a single stranded RNA loop (also referred to as hairpin) and further comprising the nucleotide sequence of the miRNA (and its complement sequence) in the double stranded RNA stem. According to a specific embodiment, the miRNA and its complement are located about 10 to about 20 nucleotides from the free ends of the miRNA double stranded RNA stem. The length and sequence of the single stranded loop region are not critical and may vary considerably, e.g. between 30 and 50 nucleotides in length. The complementarity between the miRNA and its complement need not be perfect and about 1 to 3 bulges of unpaired nucleotides can be tolerated. The secondary structure adopted by an RNA molecule can be predicted by computer algorithms conventional in the art such as mFOLD. The particular strand of the double stranded RNA stem from the pre-miRNA which is released by DCL activity and loaded onto the RISC complex is determined by the degree of complementarity at the 5 end, whereby the strand which at its 5 end is the least involved in hydrogen bounding between the nucleotides of the different strands of the cleaved dsRNA stem is loaded onto the RISC complex and will determine the sequence specificity of the target RNA molecule degradation. However, if empirically the miRNA molecule from a particular synthetic pre-miRNA molecule is not functional (because the wrong strand is loaded on the RISC complex), it will be immediately evident that this problem can be solved by exchanging the position of the miRNA molecule and its complement on the respective strands of the dsRNA stem of the pre-miRNA molecule. As is known in the art, binding between A and U involving two hydrogen bounds, or G and U involving two hydrogen bounds is less strong that between G and C involving three hydrogen bounds.
[0187] Naturally occurring miRNA molecules may be comprised within their naturally occurring pre-miRNA molecules but they can also be introduced into existing pre-miRNA molecule scaffolds by exchanging the nucleotide sequence of the miRNA molecule normally processed from such existing pre-miRNA molecule for the nucleotide sequence of another miRNA of interest. The scaffold of the pre-miRNA can also be completely synthetic. Likewise, synthetic miRNA molecules may be comprised within, and processed from, existing pre-miRNA molecule scaffolds or synthetic pre-miRNA scaffolds. Some pre-miRNA scaffolds may be preferred over others for their efficiency to be correctly processed into the designed microRNAs, particularly when expressed as a chimeric gene wherein other DNA regions, such as untranslated leader sequences or transcription termination and polyadenylation regions are incorporated in the primary transcript in addition to the pre-microRNA.
[0188] According to the present teachings, the dsRNA molecules may be naturally occurring or synthetic.
[0189] In some embodiments, the dsRNA is provided dsRNA, without additional agents (for example, transfection agents).
[0190] According to a specific embodiment, the nucleic acid agent is provided to the mosquito in a configuration devoid of a heterologous promoter for driving recombinant expression of the dsRNA (exogenous), rendering the nucleic acid molecule of the instant invention a naked molecule. The nucleic acid agent may still comprise modifications that may affect its stability and bioavailability (e.g., PNA).
[0191] The term recombinant expression refers to an expression from a nucleic acid construct.
[0192] As used herein devoid of a heterologous promoter for driving expression of the dsRNA means that the molecule doesn't include a cis-acting regulatory sequence (e.g., heterologous) transcribing the dsRNA. As used herein the term heterologous refers to exogenous, not-naturally occurring within a native cell of the mosquito or in a cell in which the dsRNA is fed to the larvae or mosquito (such as by position of integration, or being non-naturally found within the cell).
[0193] The nucleic acid agent can be further comprised within a nucleic acid construct comprising additional regulatory elements. Thus, according to some embodiments of aspects of the invention there is provided a nucleic acid construct comprising isolated nucleic acid agent comprising a nucleic acid sequence which specifically reduces the expression of at least one plant pathogen resistance gene product.
[0194] The dsRNA can be a mixture of long and short dsRNA molecules such as, dsRNA, siRNA, siRNA+dsRNA, siRNA+miRNA, or a combination of same.
[0195] The nucleic acid agent is designed for specifically targeting a target gene of interest (e.g. a mosquito pathogen resistance gene). It will be appreciated that the nucleic acid agent can be used to downregulate one or more target genes (e.g. as described in detail above). If a number of target genes are targeted, a heterogenic composition which comprises a plurality of nucleic acid agents for targeting a number of target genes is used. Alternatively the plurality of nucleic acid agents is separately formulated. According to a specific embodiment, a number of distinct nucleic acid agent molecules for a single target are used, which may be used separately or simultaneously (i.e., co-formulation) applied.
[0196] For example, in order to silence the expression of an mRNA of interest, synthesis of the dsRNA suitable for use with some embodiments of the invention can be selected as follows. First, the mRNA sequence is scanned including the 3 UTR and the 5 UTR. Second, the mRNA sequence is compared to an appropriate genomic database using any sequence alignment software, such as the BLAST software available from the NCBI server (wwwdotncbidotnlmdotnihdotgov/BLAST/). Putative regions in the mRNA sequence which exhibit significant homology to other coding sequences are filtered out.
[0197] Qualifying target sequences are selected as template for dsRNA synthesis. Preferred sequences are those that have as little homology to other genes in the genome to reduce an off-target effect.
[0198] It will be appreciated that the RNA silencing agent of some embodiments of the invention need not be limited to those molecules containing only RNA, but further encompasses chemically-modified nucleotides and non-nucleotides.
[0199] According to one embodiment, the dsRNA is selected from the group consisting of SEQ ID NOs: 184-192, 203.
[0200] The dsRNA may be synthesized using any method known in the art, including either enzymatic syntheses or solid-phase syntheses. These are especially useful in the case of short polynucleotide sequences with or without modifications as explained above. Equipment and reagents for executing solid-phase synthesis are commercially available from, for example, Applied Biosystems. Any other means for such synthesis may also be employed; the actual synthesis of the oligonucleotides is well within the capabilities of one skilled in the art and can be accomplished via established methodologies as detailed in, for example: Sambrook, J. and Russell, D. W. (2001), Molecular Cloning: A Laboratory Manual; Ausubel, R. M. et al., eds. (1994, 1989), Current Protocols in Molecular Biology, Volumes I-III, John Wiley & Sons, Baltimore, Md.; Perbal, B. (1988), A Practical Guide to Molecular Cloning, John Wiley & Sons, New York; and Gait, M. J., ed. (1984), Oligonucleotide Synthesis; utilizing solid-phase chemistry, e.g. cyanoethyl phosphoramidite followed by deprotection, desalting, and purification by, for example, an automated trityl-on method or HPLC.
[0201] Although the instant teachings mainly concentrate on the use of dsRNA which is not comprised in or transcribed from an expression vector (naked), the present teachings also contemplate an embodiment wherein the nucleic acid agent is ligated into a nucleic acid construct comprising additional regulatory elements. Thus, according to some embodiments of the invention there is provided a nucleic acid construct comprising an isolated nucleic acid agent comprising a nucleic acid sequence.
[0202] For transcription from an expression cassette, a regulatory region (e.g., promoter, enhancer, silencer, leader, intron and polyadenylation) may be used to modulate the transcription of the RNA strand (or strands). Therefore, in one embodiment, there is provided a nucleic acid construct comprising the nucleic acid agent. The nucleic acid construct can have polynucleotide sequences constructed to facilitate transcription of the RNA molecules of the present invention operably linked to one or more promoter sequences functional in a mosquito cell. The polynucleotide sequences may be placed under the control of an endogenous promoter normally present in the mosquito genome. The polynucleotide sequences of the present invention, under the control of an operably linked promoter sequence, may further be flanked by additional sequences that advantageously affect its transcription and/or the stability of a resulting transcript. Such sequences are generally located upstream of the promoter and/or downstream of the 3 end of the expression construct. The term operably linked, as used in reference to a regulatory sequence and a structural nucleotide sequence, means that the regulatory sequence causes regulated expression of the linked structural nucleotide sequence. Regulatory sequences or control elements refer to nucleotide sequences located upstream, within, or downstream of a structural nucleotide sequence, and which influence the timing and level or amount of transcription, RNA processing or stability, or translation of the associated structural nucleotide sequence. Regulatory sequences may include promoters, translation leader sequences, introns, enhancers, stem-loop structures, repressor binding sequences, termination sequences, pausing sequences, polyadenylation recognition sequences, and the like.
[0203] It will be appreciated that the nucleic acid agents can be delivered to the mosquito larva in a variety of ways.
[0204] According to one embodiment, the composition of some embodiments comprises cells, which comprise the nucleic acid agent.
[0205] As used herein the term cell or cells refers to a mosquito larva ingestible cell, for example, a cell of a mosquito larva ingestible organism. Mosquito larva ingestible organism can be a unicellular mosquito larva ingestible organism, or a multi-cellular mosquito larva ingestible organism.
[0206] Examples of such cells include, but are not limited to, cells of phytoplankton (e.g., algae), fungi (e.g., Legendium giganteum), bacteria, and zooplankton such as rotifers.
[0207] Specific examples include, bacteria (e.g., cocci and rods), filamentous algae and detritus.
[0208] The choice of the cell or organism may depend on the target larvae.
[0209] Analyzing the gut content of mosquitoes and larvae may be used to elucidate their preferred diet. The skilled artisan knows how to characterize the gut content. Typically the gut content is stained such as by using a fluorochromatic stain, 4,6-diamidino-2-phenylindole or DAPI.
[0210] Cells of particular interest are the prokaryotes and the lower eukaryotes, such as fungi. Illustrative prokaryotes, both Gram-negative and Gram-positive, include Enterobacteriaceae; Bacillaceae; Rhizobiceae; Spirillaceae; Lactobacillaceae; and phylloplane organisms such as members of the Pseudomonadaceae.
[0211] An exemplary list includes Bacillus spp., including B. megaterium, B. subtilis; B. cereus, Bacillus thuringiensis, Escherichia spp., including E. coli, and/or Pseudomonas spp., including P. cepacia, P. aeruginosa, and P. fluorescens.
[0212] Among eukaryotes are fungi, such as Phycomycetes and Ascomycetes, which includes yeast, such as Schizosaccharomyces; and Basidiomycetes, Rhodotorula, Aureobasidium, Sporobolomyces, Saccharomyces spp., and Sporobolomyces spp.
[0213] According to a specific embodiment, the cell is an algal cell.
[0214] Various algal species can be used in accordance with the teachings of the invention since they are a significant part of the diet for many kinds of mosquito larvae that feed opportunistically on microorganisms as well as on small aquatic animals such as rotifers.
[0215] Examples of algae that can be used in accordance with the present teachings include, but are not limited to, blue-green algae as well as green algae.
[0216] According to a specific embodiment, the algal cell is a cyanobacterium cell which is in itself toxic to mosquitoes as taught by Marten 2007 Biorational Control of Mosquitoes. American mosquito control association Bulletin No. 7.
[0217] Specific examples of algal cells which can be used in accordance with the present teachings are provided in Marten, G. G. (1986) Mosquito control by plankton management: the potential of indigestible green algae. Journal of Tropical Medicine and Hygiene, 89: 213-222, and further listed infra.
Green Algae
[0218] Actinastrum hantzschii, Ankistrodesmus falcatus, Ankistrodesmus spiralis, Aphanochaete elegans, Chlamydomonas sp., Chlorella ellipsoidea, Chlorella pyrenoidosa, Chlorella variegate, Chlorococcum hypnosporum, Chodatella brevispina, Closterium acerosum, Closteriopsis acicularis, Coccochloris peniocystis, Crucigenia lauterbornii, Crucigenia tetrapedia, Coronastrum ellipsoideum, Cosmarium botrytis, Desmidium swartzii, Eudorina elegans, Gloeocystis gigas, Golenkinia minutissima, Gonium multicoccum, Nannochloris oculata, Oocystis marssonii, Oocystis minuta, Oocystis pusilla, Palmella texensis, Pandorina morum, Paulschulzia pseudovolvox, Pediastrum clathratum, Pediastrum duplex, Pediastrum simplex, Planktosphaeria gelatinosa, Polyedriopsis spinulosa, Pseudococcomyxa adhaerans, Quadrigula closterioides, Radiococcus nimbatus, Scenedesmus basiliensis, Spirogyra pratensis, Staurastrum gladiosum, Tetraedron bitridens, Trochiscia hystrix.
Blue-Green Algae
[0219] Anabaena catenula, Anabaena spiroides, Chroococcus turgidus, Cylindrospermum licheniforme, Bucapsis sp. (U. Texas No. 1519), Lyngbya spiralis, Microcystis aeruginosa, Nodularia spumigena, Nostoc linckia, Oscillatoria lutea, Phormidium faveolarum, Spinilina platensis.
Other
[0220] Compsopogon coeruleus, Cryptomonas ovata, Navicula pelliculisa.
[0221] The nucleic acid agent is introduced into the cells. To this end cells are typically selected exhibiting natural competence or are rendered competent, also referred to as artificial competence.
[0222] Competence is the ability of a cell to take up nucleic acid molecules e.g., the nucleic acid agent, from its environment.
[0223] A number of methods are known in the art to induce artificial competence.
[0224] Thus, artificial competence can be induced in laboratory procedures that involve making the cell passively permeable to the nucleic acid agent by exposing it to conditions that do not normally occur in nature. Typically the cells are incubated in a solution containing divalent cations (e.g., calcium chloride) under cold conditions, before being exposed to a heat pulse (heat shock).
[0225] Electroporation is another method of promoting competence. In this method the cells are briefly shocked with an electric field (e.g., 10-20 kV/cm) which is thought to create holes in the cell membrane through which the nucleic acid agent may enter. After the electric shock the holes are rapidly closed by the cell's membrane-repair mechanisms.
[0226] Yet alternatively or additionally, cells may be treated with enzymes to degrade their cell walls, yielding. These cells are very fragile but take up foreign nucleic acids at a high rate.
[0227] Exposing intact cells to alkali cations such as those of cesium or lithium allows the cells to take up nucleic acids. Improved protocols use this transformation method, while employing lithium acetate, polyethylene glycol, and single-stranded nucleic acids. In these protocols, the single-stranded molecule preferentially binds to the cell wall in yeast cells, preventing double stranded molecule from doing so and leaving it available for transformation.
[0228] Enzymatic digestion or agitation with glass beads may also be used to transform cells.
[0229] Particle bombardment, microprojectile bombardment, or biolistics is yet another method for artificial competence. Particles of gold or tungsten are coated with the nucleic acid agent and then shot into cells.
[0230] Astier C R Acad Sci Hebd Seances Acad Sci D. 1976 Feb. 23; 282(8):795-7, which is hereby incorporated by reference in its entirety, teaches transformation of a unicellular, facultative chemoheterotroph blue-green Algae, Aphanocapsa 6714. The recipient strain becomes competent when the growth reaches its second, slower, exponential phase.
[0231] Vazquez-Acevedo M.sup.1Mitochondrion. 2014 Feb. 21. pii: S1567-7249(14)00019-1. doi: 10.1016/j.mito.2014.02.005, which is hereby incorporated by reference in its entirety, teaches transformation of algal cells e.g., Chlamydomonas reinhardtii, Polytomella sp. and Volvox carteri by generating import-competent mitochondria.
[0232] According to a specific embodiment the composition of the invention comprises an RNA binding protein.
[0233] According to a specific embodiment, the dsRNA binding protein (DRBP) comprises any of the family of eukaryotic, prokaryotic, and viral-encoded products that share a common evolutionarily conserved motif specifically facilitating interaction with dsRNA. Polypeptides which comprise dsRNA binding domains (DRBDs) may interact with at least 11 bp of dsRNA, an event that is independent of nucleotide sequence arrangement. More than 20 DRBPs have been identified and reportedly function in a diverse range of critically important roles in the cell. Examples include the dsRNA-dependent protein kinase PKR that functions in dsRNA signaling and host defense against virus infection and DICER.
[0234] Alternatively or additionally, an siRNA binding protein may be used as taught in U.S. Pat. Application No. 20140045914, which is herein incorporated by reference in its entirety.
[0235] According to a specific embodiment the RNA binding protein is the p19 RNA binding protein. The protein may increase in vivo stability of an siRNA molecule by coupling it at a binding site where the homodimer of the p19 RNA binding proteins is formed and thus protecting the siRNA from external attacks and accordingly, it can be utilized as an effective siRNA delivery vehicle.
[0236] According to a specific embodiment, the target-oriented peptide is located on the surface of the siRNA binding protein.
[0237] According to specific embodiments of the invention, whole cell preparations, cell extracts, cell suspensions, cell homogenates, cell lysates, cell supernatants, cell filtrates, or cell pellets of cell cultures of cells comprising the nucleic acid agent can be used.
[0238] The composition of some embodiments of the invention may further comprise at least one of a surface-active agent, an inert carrier vehicle, a preservative, a humectant, a feeding stimulant, an attractant, an encapsulating agent, a binder, an emulsifier, a dye, an ultra-violet protector, a buffer, a flow agent or fertilizer, micronutrient donors.
[0239] According to a specific embodiment, the cells are formulated by any means known in the art. The methods for preparing such formulations include, e.g., desiccation, lyophilization, homogenization, extraction, filtration, encapsulation centrifugation, sedimentation, or concentration of one or more cell types.
[0240] Additionally, the composition may be supplemented with larval food (food bait) or with excrements of farm animals, on which the mosquito larvae feed.
[0241] In one embodiment, the composition comprises an oil flowable suspension. For example, in some embodiments, oil flowable or aqueous solutions may be formulated to contain lysed or unlysed cells, spores, or crystals.
[0242] In a further embodiment, the composition may be formulated as a water dispersible granule or powder.
[0243] In yet a further embodiment, the compositions of the present invention may also comprise a wettable powder, spray, emulsion, colloid, aqueous or organic solution, dust, pellet, or colloidal concentrate. Dry forms of the compositions may be formulated to dissolve immediately upon wetting, or alternatively, dissolve in a controlled-release, sustained-release, or other time-dependent manner.
[0244] Alternatively or additionally, the composition may comprise an aqueous solution. Such aqueous solutions or suspensions may be provided as a concentrated stock solution which is diluted prior to application, or alternatively, as a diluted solution ready-to-apply. Such compositions may be formulated in a variety of ways. They may be employed as wettable powders, granules or dusts, by mixing with various inert materials, such as inorganic minerals (silicone or silicon derivatives, phyllosilicates, carbonates, sulfates, phosphates, and the like) or botanical materials (powdered corncobs, rice hulls, walnut shells, and the like).
[0245] The formulations may include spreader-sticker adjuvants, stabilizing agents, other pesticidal additives, or surfactants. Liquid formulations may be employed as foams, suspensions, emulsifiable concentrates, or the like. The ingredients may include Theological agents, surfactants, emulsifiers, dispersants, or polymers.
[0246] As mentioned, the dsRNA of the invention may be administered as a naked dsRNA. Alternatively, the dsRNA of the invention may be conjugated to a carrier known to one of skill in the art, such as a transfection agent e.g. PEI or chitosan or a protein/lipid carrier.
[0247] The compositions may be formulated prior to administration in an appropriate means such as lyophilized, freeze-dried, microencapsulated, desiccated, or in an aqueous carrier, medium or suitable diluent, such as saline or other buffer. Suitable agricultural carriers can be solid, semi-solid or liquid and are well known in the art. The term agriculturally-acceptable carrier covers all adjuvants, e.g., inert components, dispersants, surfactants, tackifiers, binders, etc. that are ordinarily used in pesticide formulation technology.
[0248] According to one embodiment, the composition is formulated as a semi-solid such as in agarose (e.g. agarose cubes).
[0249] As mentioned, the nucleic acid agents can be delivered to the mosquito larva in various ways. Thus, administration of the composition to the mosquito larva may be carried out using any suitable or desired manual or mechanical technique for application of a composition comprising a nucleic acid agent, including but not limited to spraying, soaking, brushing, dressing, dripping, dipping, coating, spreading, applying as small droplets, a mist or an aerosol.
[0250] According to one embodiment, the composition is administered to the larvae by soaking or by spraying.
[0251] According to one embodiment, the composition is administered to the larvae by feeding.
[0252] Feeding the larva with the composition can be effected for about 2 hours to 120 hours, about 2 hours to 108 hours, about 2 hours to 96 hours, about 2 hours to 84 hours, about 2 hours to 72 hours, for about 2 hours to 60 hours, about 2 hours to 48 hours, about 2 hours to 36 hours, about 2 hours to 24 hours, about 2 hours to 12 hours, 12 hours to 24 hours, about 24 hours to 36 hours, about 24 hours to 48 hours, about 36 hours to 48 hours, for about 48 hours to 60 hours, about 60 hours to 72 hours, about 72 hours to 84 hours, about 84 hours to 96 hours, about 96 hours to 108 hours, or about 108 hours to 120 hours.
[0253] According to a specific embodiment, the composition is administered to the larvae by feeding for 48-96 hours.
[0254] According to one embodiment, feeding the larva with the composition is affected until the larva reaches pupa stage.
[0255] According to one embodiment, prior to feeding the larva with dsRNA, the larvae are first soaked with dsRNA.
[0256] Soaking the larva with the composition can be effected for about 2 hours to 96 hours, about 2 hours to 84 hours, about 2 hours to 72 hours, for about 2 hours to 60 hours, about 2 hours to 48 hours, about 2 hours to 36 hours, about 2 hours to 24 hours, about 2 hours to 12 hours, 12 hours to 96 hours, about 12 hours to 84 hours, about 12 hours to 72 hours, for about 12 hours to 60 hours, about 12 hours to 48 hours, about 12 hours to 36 hours, about 12 hours to 24 hours, or about 24 hours to 48 hours.
[0257] According to a specific embodiment, the composition is administered to the larvae by soaking for 12-24 hours.
[0258] Thus, for example, larvae (e.g. first, second, third or four instar larva, e.g. third instar larvae) are first treated (in groups of about 100 larvae) with dsRNA at a dose of about 0.001-5 g/L (e.g. 0.2 g/L), in a final volume of about 3 mL of dsRNA solution in autoclaved water. After soaking in the dsRNA solutions for about 12-48 hours (e.g. for 24 hrs) at 25-29 C. (e.g. 27 C.), the larvae are transferred into containers so as not to exceed concentration of about 200-500 larvae/1500 mL (e.g. 300 larvae/1500 mL) of chlorine-free tap water, and provided with food containing dsRNA (e.g. agarose cubes containing 300 g of dsRNA, e.g. 1 g of dsRNA/larvae). The larva are fed once a day until they reach pupa stage (e.g. for 2-5 days, e.g. four days). Larvae are also fed with additional food requirements, e.g. 2-10 mg/100 mL (e.g. 6 mg/100 mL) lab dog/cat diet suspended in water.
[0259] Feeding the larva can be effected using any method known in the art. Thus, for example, the larva may be fed with agarose cubes, chitosan nanoparticles, oral delivery or diet containing dsRNA.
[0260] Chitosan nanoparticles: A group of 15-20 3rd-instar mosquito larvae are transferred into a container (e.g. 500 ml glass beaker) containing 50-1000 ml, e.g. 100 ml, of deionized water. One sixth of the gel slices that are prepared from dsRNA (e.g. 32 g of dsRNA) are added into each beaker. Approximately an equal amount of the gel slices are used to feed the larvae once a day for a total of 2-5 days. e.g. four days (see Insect Mol Biol. 2010 19(5):683-93).
[0261] Oral delivery of dsRNA: First instar larvae (less than 24 hrs old) are treated in groups of 10-100, e.g. 50, in a final volume of 25-100 l of dsRNA, e.g. 75 l of dsRNA, at various concentrations (ranging from 0.01 to 5 g/l, e.g. 0.02 to 0.5 g/l-dsRNAs) in tubes e.g. 2 mL microfuge tube (see J Insect Sci. 2013; 13:69).
[0262] Diet containing dsRNA: larvae are fed a single concentration of 1-2000 ng dsRNA/mL, e.g. 1000 ng dsRNA/mL, diet in a diet overlay bioassay for a period of 1-10 days, e.g. 5 days (see PLoS One. 2012; 7(10): e47534).
[0263] Diet containing dsRNA: Newly emerged larvae are starved for 1-12 hours, e.g. 2 hours, and are then fed with a single drop of 0.5-10 l, e.g. 1 l, containing 1-20 g, e.g. 4 g, dsRNA (1-20 g of dsRNA/larva, e.g. 4 g of dsRNA/larva) (see Appl Environ Microbiol. 2013 August; 79(15):4543-50). Thus, according to a specific embodiment, the composition may be applied to standing water. The mosquito larva may be soaked in the water for several hours (1, 2, 3, 4, 5, 6 hours or more) to several days (1, 2, 3, 4 days or more) with or without the use of transfection reagents or dsRNA carriers.
[0264] Alternatively, the mosquito larva may be sprayed with an effective amount of the composition (e.g. via an aqueous solution).
[0265] If needed, the composition may be dissolved, suspended and/or diluted in a suitable solution (as described in detail above) before use.
[0266] The nucleic acid compositions of the invention may be employed in the method of the invention singly or in combination with other compounds, including, but not limited to, pesticides.
[0267] Compositions of the invention can be used to control (e.g. exterminate) mosquitoes. Such an application comprises administering to larvae of the mosquitoes an effective amount of the composition which renders an adult stage of the mosquitoes lethally susceptible to a pathogen, thereby controlling (e.g. exterminating) the mosquitoes.
[0268] Thus, regardless of the method of application, the amount of the active component(s) are applied at a effective amount for a larval stage of the mosquito to be lethally susceptible to a larvicide, which will vary depending on factors such as, for example, the specific mosquito to be controlled, the type of larvicide, the water source to be treated, the environmental conditions, and the method, rate, and quantity of application of the composition.
[0269] The concentration of the composition that is used for environmental, systemic, or foliar application will vary widely depending upon the nature of the particular formulation, means of application, environmental conditions, and degree of biocidal activity.
[0270] Exemplary concentrations of dsRNA in the composition (e.g. for soaking) include, but are not limited to, about 1 pg-10 g of dsRNA/l, about 1 pg-1 g of dsRNA/l, about 1 pg-0.1 g of dsRNA/l, about 1 pg-0.01 g of dsRNA/l, about 1 pg-0.001 g of dsRNA/l, about 0.001 g-10 g of dsRNA/l, about 0.001 g-5 g of dsRNA/l, about 0.001 g-1 g of dsRNA/l, about 0.001 g-0.1 g of dsRNA/l, about 0.001 g-0.01 g of dsRNA/l, about 0.01 g-10 g of dsRNA/l, about 0.01 g-5 g of dsRNA/l, about 0.01 g-1 g of dsRNA/l, about 0.01 g-0.1 g of dsRNA/l, about 0.1 g-10 g of dsRNA/l, about 0.1 g-5 g of dsRNA/l, about 0.5 g-5 g of dsRNA/l, about 0.5 g-10 g of dsRNA/l, about 1 g-5 g of dsRNA/l, or about 1 g-10 g of dsRNA/l.
[0271] When formulated as a feed, the dsRNA may be effected at a dose of 1 pg/larvae-1000 g/larvae, 1 pg/larvae-500 g/larvae, 1 pg/larvae-100 g/larvae, 1 pg/larvae-10 g/larvae, 1 pg/larvae-1 g/larvae, 1 pg/larvae-0.1 g/larvae, 1 pg/larvae-0.01 g/larvae, 1 pg/larvae-0.001 g/larvae, 0.001-1000 g/larvae, 0.001-500 g/larvae, 0.001-100 g/larvae, 0.001-50 g/larvae, 0.001-10 g/larvae, 0.001-1 g/larvae, 0.001-0.1 g/larvae, 0.001-0.01 g/larvae, 0.01-1000 g/larvae, 0.01-500 g/larvae, 0.01-100 g/larvae, 0.01-50 g/larvae, 0.01-10 g/larvae, 0.01-1 g/larvae, 0.01-0.1 g/larvae, 0.1-1000 g/larvae, 0.1-500 g/larvae, 0.1-100 g/larvae, 0.1-50 g/larvae, 0.1-10 g/larvae, 0.1-1 g/larvae, 1-1000 g/larvae, 1-500 g/larvae, 1-100 g/larvae, 1-50 g/larvae, 1-10 g/larvae, 10-1000 g/larvae, 10-500 g/larvae, 10-100 g/larvae, 10-50 g/larvae, 50-1000 g/larvae, 50-500 g/larvae, 50-400 g/larvae, 50-300 g/larvae, 100-500 g/larvae, 100-300 g/larvae, 200-500 g/larvae, 200-300 g/larvae, or 300-500 g/larvae.
[0272] The mosquito larva food containing dsRNA may be prepared by any method known to one of skill in the art. Thus, for example, cubes of dsRNA-containing mosquito food may be prepared by first mixing 10-500 g, e.g. 300 g of dsRNA with 3 to 300 g, e.g. 10 g of a transfection agent e.g. Polyethylenimine 25 kDa linear (Polysciences) in 10-500 L, e.g. 200 L of sterile water. Alternatively, 2 different dsRNA (10-500 g, e.g. 150 g of each) plus 3 to 300 g, e.g. 30 g of Polyethylenimine may be mixed in 10-500 L, e.g. 200 L of sterile water. Alternatively, cubes of dsRNA-containing mosquito food may be prepared without the addition of transfection reagents. Then, a suspension of ground mosquito larval food (1-20 grams/100 mL e.g. 6 grams/100 mL) may be prepared with 2% agarose (Fisher Scientific). The food/agarose mixture can then be heated to 53-57 C., e.g. 55 C., and 10-500 L, e.g. 200 L of the mixture can then be transferred to the tubes containing 10-500 L, e.g. 200 L of dsRNA+PEI or dsRNA only. The mixture is then allowed to solidify into a gel. The solidified gel containing both the food and dsRNA can be cut into small pieces (approximately 1-10 mm, e.g. 1 mm, thick) using a razor blade, and can be used to feed mosquito larvae in water.
[0273] According to some embodiments, the nucleic acid agent is provided in amounts effective to reduce or suppress expression of at least one mosquito gene product. As used herein a suppressive amount or an effective amount refers to an amount of dsRNA which is sufficient to downregulate (reduce expression of) the target gene by at least 20%, 30%, 40%, 50%, or more, say 60%, 70%, 80%, 90% or more even 100%.
[0274] Testing the efficacy of gene silencing can be effected using any method known in the art. For example, using quantitative RT-PCR measuring gene knockdown. Thus, for example, ten to twenty larvae from each treatment group can be collected and pooled together. RNA can be extracted therefrom and cDNA syntheses can be performed. The cDNA can then be used to assess the extent of RNAi by measuring levels of gene expression using qRT-PCR.
[0275] Reagents of the present invention can be packed in a kit including the nucleic acid agent (e.g. dsRNA), instructions for administration of the nucleic acid agent, construct or composition to mosquito larva.
[0276] Compositions of some embodiments of the invention may, if desired, be presented in a pack or dispenser device, which may contain one or more dosage forms containing the active ingredient. The pack may, for example, comprise metal or plastic foil, such as a blister pack. The pack or dispenser device may be accompanied by instructions for administration to the mosquito larva.
[0277] As used herein the term about refers to 10%.
[0278] The terms comprises, comprising, includes, including, having and their conjugates mean including but not limited to.
[0279] The term consisting of means including and limited to.
[0280] The term consisting essentially of means that the composition, method or structure may include additional ingredients, steps and/or parts, but only if the additional ingredients, steps and/or parts do not materially alter the basic and novel characteristics of the claimed composition, method or structure.
[0281] As used herein, the singular form a, an and the include plural references unless the context clearly dictates otherwise. For example, the term a compound or at least one compound may include a plurality of compounds, including mixtures thereof.
[0282] Throughout this application, various embodiments of this invention may be presented in a range format. It should be understood that the description in range format is merely for convenience and brevity and should not be construed as an inflexible limitation on the scope of the invention. Accordingly, the description of a range should be considered to have specifically disclosed all the possible subranges as well as individual numerical values within that range. For example, description of a range such as from 1 to 6 should be considered to have specifically disclosed subranges such as from 1 to 3, from 1 to 4, from 1 to 5, from 2 to 4, from 2 to 6, from 3 to 6 etc., as well as individual numbers within that range, for example, 1, 2, 3, 4, 5, and 6. This applies regardless of the breadth of the range.
[0283] Whenever a numerical range is indicated herein, it is meant to include any cited numeral (fractional or integral) within the indicated range. The phrases ranging/ranges between a first indicate number and a second indicate number and ranging/ranges from a first indicate number to a second indicate number are used herein interchangeably and are meant to include the first and second indicated numbers and all the fractional and integral numerals therebetween.
[0284] As used herein the term method refers to manners, means, techniques and procedures for accomplishing a given task including, but not limited to, those manners, means, techniques and procedures either known to, or readily developed from known manners, means, techniques and procedures by practitioners of the chemical, pharmacological, biological, biochemical and medical arts.
[0285] As used herein, the term treating includes abrogating, substantially inhibiting, slowing or reversing the progression of a condition, substantially ameliorating clinical or aesthetical symptoms of a condition or substantially preventing the appearance of clinical or aesthetical symptoms of a condition.
[0286] It is appreciated that certain features of the invention, which are, for clarity, described in the context of separate embodiments, may also be provided in combination in a single embodiment. Conversely, various features of the invention, which are, for brevity, described in the context of a single embodiment, may also be provided separately or in any suitable subcombination or as suitable in any other described embodiment of the invention. Certain features described in the context of various embodiments are not to be considered essential features of those embodiments, unless the embodiment is inoperative without those elements.
[0287] Various embodiments and aspects of the present invention as delineated hereinabove and as claimed in the claims section below find experimental support in the following examples.
EXAMPLES
[0288] Reference is now made to the following examples, which together with the above descriptions, illustrate the invention in a non limiting fashion.
[0289] Generally, the nomenclature used herein and the laboratory procedures utilized in the present invention include molecular, biochemical, microbiological and recombinant DNA techniques. Such techniques are thoroughly explained in the literature. See, for example, Molecular Cloning: A laboratory Manual Sambrook et al., (1989); Current Protocols in Molecular Biology Volumes I-III Ausubel, R. M., ed. (1994); Ausubel et al., Current Protocols in Molecular Biology, John Wiley and Sons, Baltimore, Md. (1989); Perbal, A Practical Guide to Molecular Cloning, John Wiley & Sons, New York (1988); Watson et al., Recombinant DNA, Scientific American Books, New York; Birren et al. (eds) Genome Analysis: A Laboratory Manual Series, Vols. 1-4, Cold Spring Harbor Laboratory Press, New York (1998); methodologies as set forth in U.S. Pat. Nos. 4,666,828; 4,683,202; 4,801,531; 5,192,659 and 5,272,057; Cell Biology: A Laboratory Handbook, Volumes I-III Cellis, J. E., ed. (1994); Current Protocols in Immunology Volumes I-III Coligan J. E., ed. (1994); Stites et al. (eds), Basic and Clinical Immunology (8th Edition), Appleton & Lange, Norwalk, Conn. (1994); Mishell and Shiigi (eds), Selected Methods in Cellular Immunology, W. H. Freeman and Co., New York (1980); available immunoassays are extensively described in the patent and scientific literature, see, for example, U.S. Pat. Nos. 3,791,932; 3,839,153; 3,850,752; 3,850,578; 3,853,987; 3,867,517; 3,879,262; 3,901,654; 3,935,074; 3,984,533; 3,996,345; 4,034,074; 4,098,876; 4,879,219; 5,011,771 and 5,281,521; Oligonucleotide Synthesis Gait, M. J., ed. (1984); Nucleic Acid Hybridization Hames, B. D., and Higgins S. J., eds. (1985); Transcription and Translation Hames, B. D., and Higgins S. J., Eds. (1984); Animal Cell Culture Freshney, R. I., ed. (1986); Immobilized Cells and Enzymes IRL Press, (1986); A Practical Guide to Molecular Cloning Perbal, B., (1984) and Methods in Enzymology Vol. 1-317, Academic Press; PCR Protocols: A Guide To Methods And Applications, Academic Press, San Diego, Calif. (1990); Marshak et al., Strategies for Protein Purification and CharacterizationA Laboratory Course Manual CSHL Press (1996); all of which are incorporated by reference as if fully set forth herein. Other general references are provided throughout this document. The procedures therein are believed to be well known in the art and are provided for the convenience of the reader. All the information contained therein is incorporated herein by reference.
Example 1
Materials and Experimental Procedures
[0290] Mosquito Maintenance
[0291] Mosquitoes were taken from an Ae. aegypti colony of the Rockefeller strain or from a mosquito field population of Ae. aegypti isolated from urban area of Rio de Janeiro, Brazil. Both lineages were reared continuously in the laboratory at 28 C. and 70-80% relative humidity. Adult insects were maintained in a 10% sucrose solution, and the adult females were fed with sheep blood for egg laying. The larvae were reared on dog/cat food unless stated otherwise.
[0292] Introducing dsRNA into a Mosquito Larvae
[0293] Two different approaches were evaluated for treatment with dsRNA according to the larvicides Temephos or Diflubenzuron:
[0294] 1. Soaking with Naked dsRNA and Bioassay with Temephos
[0295] First (L1), Second (L2) or Third (L3) instar larvae were treated (in groups of 100 larvae) in a final volume of 3 mL of autoclaved water with sodium channel (AAEL008297), PgP (AAEL010379), Ago3 (AAEL007823), and Aub (AAEL007698) dsRNA (0.5 g/L), or AAEL005112, AAEL003446, AAEL007815 and AAEL002202 dsRNA (0.1 g/L). The control group was kept in 3 ml sterile water only. Larvae were soaked in the dsRNA solutions for 24 hours at 27 C., and were then transferred into new containers (200 larvae/1000 mL of chlorine-free tap water), which were also maintained at 27 C., and provided 6 mg/mL lab dog/cat diet (Purina Mills) suspended in water as a source of food on a daily basis. After soaking procedure, the larvae were reared until third instar and divided in 6 replicas with 10-20 larvae in each cup (final volume of 100 mL) or were divided immediately after soaking. Six replicas were treated with the lethal concentration 50 (0.00573 ppm) of temephos and 2 replicas with ethanol only (control group). Mortality was recorded after 24 and 48 hours. See Flowcharts 1 and 2 (
[0296] 2. Larvae Feeding with Food-Containing dsRNA and Bioassay with Diflubenzuron
[0297] Third instar larvae (in groups of 10 larvae) were exposed to one concentration (2.5 g/L) of diflubenzuron pestanal (Sigma) in a final volume of 100 mL of chlorine-free tap water. From the beginning of diflubenzuron treatment, larvae were fed with agarose cubes containing 20 g of dsRNA once a day for a total of 4 days. The plastic cups were covered with a nylon mesh in order to avoid adult escape. The evaluations were performed every other day by recording the mortality of the larvae and the number of emerged adults per replication as previously described [Mulla et al. (2003) J. Vect. Ecol. 28, 2:241-54]. The test was terminated when all the larvae became pupae in the control group. The inhibition of emergence (%) was calculated according to the following formula: 100-100(T/C) where T is percent emergence in treated groups and C is percent emergence in control groups [Mulla et al. (1974) Proc. Papers Calif. Mosq. Contr. Assoc. 42: 175-176]. Mortality was recorded every other day during 2 weeks. See Flowchart 3 (
[0298] Preparation of Mosquito Larval Food Containing dsRNA
[0299] Cubes of dsRNA-containing mosquito food were prepared as follows: First, 20 g of dsRNA were mixed with 10 g of Polyethylenimine 25 kDa linear (Polysciences) in 50 L of sterile water. Alternatively, 2 different dsRNA (20 g of each) plus 20 g of Polyethylenimine were mixed in 50 L of sterile water. Then, a suspension of ground mosquito larval food (6 grams/100 mL) was prepared with 2% agarose (Fisher Scientific). The food/agarose mixture was heated to 55 C. and 50 L of the mixture was then transferred to the tubes containing 50 L of dsRNA+PEI or water only (control). The mixture was then allowed to solidify into a gel. The solidified gel containing both the food and dsRNA was cut into small pieces (approximately 1 mm thick) using a razor blade, which were then used to feed mosquito larvae in water.
[0300] RNA Isolation and dsRNA Production
[0301] Total RNA was extracted from groups of five Ae. aegypti fourth instar larvae and early adult male/female Ae. aegypti, using TRIzol (Invitrogen, Carlsbad, Calif., USA) according to the manufacturer's instructions. RNA was treated with amplification grade DNase I (Invitrogen) and 1 g was used to synthesize cDNA using a First Strand cDNA Synthesis kit (Invitrogen). The cDNA served as template DNA for PCR amplification of gene fragments using the primers listed in Table 2 (below). PCR products were purified using a QIAquick PCR purification kit (Qiagen). The MEGAscript RNAi kit (Ambion) was then used for in vitro transcription and purification of dsRNAs (see Flowchart 4,
TABLE-US-00003 TABLE2 qPCRprimersforlarvicidetargets Targetgene Accessionnumber qPCRprimers(5-3) P-glycoprotein XM_001654442.1 F:GCGCGCTCGTTCAGTATTTA AAEL010379 (SEQIDNO:166) R:ACACCCGTTACGGCACAATA (SEQIDNO:167) Argonaute-3 XM_001652895.1 F:TCGGCATTCGTAGCTTCGTT AAEL007823 (SEQIDNO:168) R:GCAGCTGACAGTTTGCCTTC (SEQIDNO:169) AuB F:CAGAATCCCAGACCCGGAAC AAEL007698 (SEQIDNO:170) R:TTGGCGAAACCGTACCTTGA (SEQIDNO:171) Sodiumchannel XM_001653136.1 F:CTGGAGTCGGTGAGCGAAA AAEL008297 (SEQIDNO:172) R:TACGTATCGTAAACGCGCTC (SEQIDNO:173) Alphaesterase XM_001650322.1 F:CGCCGGATGAAGATCAACTG AAEL005112 (SEQIDNO:174) R:TTTCATCGTTTTACACGAAAGTAGT (SEQIDNO:175) AAEL003446 XM_001663587.1 F:TGCAAGCTGCTGATGGAGC (SEQIDNO:176) R:TCACCAATAGTAATGAGGGTATCCA (SEQIDNO:177) Cytochromep450 XM_001652879.1 F:CCTAGAGTTAGCCAAGGGCG AAEL007815 (SEQIDNO:178) R:CATGTCCAGGAAGGCCACTT (SEQIDNO:179) AAEL002202 XM_001654908.1 F:TCACTATCGCCATCCTTGCAT (SEQIDNO:180) R:GCCACTACATCATGGGCGTA (SEQIDNO:181) AAEL009124 XM_001653624.1 F:CCCTGTTCTCACCTCGGAAG (SEQIDNO:182) R:CGGCACTAGCCGTAAACTG (SEQIDNO:183)
TABLE-US-00004 TABLE 3 dsRNA sequences Target gene Accession number dsRNA sequence P-glycoprotein XM_001654442.1 SEQ ID NO: 184 AAEL010379 Argonaute-3 XM_001652895.1 SEQ ID NO: 185 AAEL007823 AuB SEQ ID NO: 186 AAEL007698 Sodium channel KC107440.1 SEQ ID NO: 187 AAEL008297 XM_001653136.1 Alpha esterase SEQ ID NO: 188 AAEL005112 AAEL003446 SEQ ID NO: 189 AAEL007815 SEQ ID NO: 190 AAEL002202 SEQ ID NO: 191 AAEL009124 SEQ ID NO: 192
[0302] qPCR Analysis
[0303] Approximately 1000 ng first-strand cDNA obtained as described previously was used as template. The qPCR reactions were performed using SYBR Green PCR Master Mix (Applied Biosystems) following the manufacturer's instructions. Briefly, approximately 50 ng/l cDNA and gene-specific primers (600 nM) were used for each reaction mixture. qPCR conditions used were 10 min at 95 C. followed by 35 cycles of 15 s at 94 C., 15 s at 54 C. and 60 s at 72 C. The ribosomal protein S7 and tubulin were used as the reference gene to normalize expression levels amongst the samples. Raw quantification cycle (Cq) values normalized against those of the tubulin and S7 standards were then used to calculate the relative expression levels in samples using the 2.sup.Ct method previously described [Livak & Schmittgen (2001) Methods. 25(4):402-8]. Results (meanSD) are representative of at least two independent experiments performed in triplicate.
Results
Characterization of Temephos Resistance in a Field Population (Rio De Janeiro) of Aedes aegypti Mosquitoes
[0304] Susceptibility tests were carried out according to the methodology proposed by the World Health Organization (WHO). In order to characterize the status of Temephos resistance in Ae. aegypti (Rio de Janeiro) strain, the present inventors first determined the lethal concentration LC99 (concentration able to kill 99% of the larvae) using the susceptible strain (Rockfeller) (see
Comparison of Gene Expression Profile Between Temephos-Resistant and Susceptible Ae. aegypti Strains
[0305] In order to compare the expression pattern of genes related to insecticide resistance, 3.sup.rd-instar larvae from resistant (Rio de JaneiroRJ) or susceptible (Rockfeller-Rock) strains were first treated with LC50 of Temephos during 6 hours. Then larvae were collected and RNA extracted for qPCR analysis. As seen in
Effect of dsRNA Treatment on Susceptibility of Ae. aegypti Larvae to Temephos
[0306] In the first approach, First instar larvae (Rio de Janeiro strain) were soaked with dsRNA against P-glycoprotein, Sodium channel, AAEL007815 and AAEL005112 for 24 hours. Temephos bioassay was then carried out when larvae reached Third instar stage (2-3 days after soaking). A decrease in mRNA expression level for P-glycoprotein was detected (
[0307] The present inventors also tested soaking using third instar larvae for 24 hours. After soaking, larvae were immediately treated with Temephos and mortality was recorded. A reduction in the mRNA levels was detected for Sodium channel and Ago-3 after treatment with Temephos (
[0308] Soakings tests using targets AAEL005112, AAEL003446, AAEL007815 and AAEL002202 in L1 and L3 larvae, followed by Temephos treatment as described above, were also examined (data not show).
Effect of dsRNA Treatment on Susceptibility of Ae. aegypti Larvae to Diflubenzuron
[0309] Diflubenzuron affects larval development and, therefore, induces larvae mortality by a different mechanism in comparison to Temephos. Using a different approach to delivery of dsRNA, mosquito third instar larvae were fed with dsRNA (or a mix of two dsRNAs) during treatment with Diflubenzuron. As can be seen in
Example 2
Materials and Experimental Procedures
[0310] Mosquito Maintenance
[0311] Mosquitoes were taken from an Ae. aegypti colony of the Rockefeller strain or from a mosquito field population of Ae. aegypti isolated from urban area of Rio de Janeiro, Brazil. Both lineages were reared continuously in the laboratory at 28 C. and 70-80% relative humidity. Adult mosquitoes were maintained in a 10% sucrose solution, and the adult females were fed with sheep blood for egg laying. The larvae were reared on dog/cat food unless stated otherwise.
[0312] Introducing dsRNA into a Mosquito Larvae
[0313] Three different approaches were evaluated for treatment with dsRNA:
[0314] A) Soaking with Naked dsRNA
[0315] Third instar larvae were treated (in groups of 100 larvae) in a final volume of 3 mL of dsRNA solution in autoclaved water (0.5 g/L for sodium channel (AAEL008297), PgP (AAEL010379) and Ago3 (AAEL007823) dsRNA, or 0.1 g/L for CYP9J26 (JF924909.1). The control group was kept in 3 ml sterile water only. Larvae were soaked in the dsRNA solutions for 24 hr at 27 C., and then transferred into new containers (300 larvae/1500 mL of chlorine-free tap water), which were also maintained at 27 C., and were provided 6 mg/100 mL lab dog/cat diet (Purina Mills) suspended in water as a source of food on a daily basis. As pupae developed, they were transferred to individual vials to await eclosion and sex sorting. For bioassays purpose only females up to five days old were used. See
[0316] B) Soaking with Naked dsRNA Plus Additional Larvae Feeding with Food-Containing dsRNA
[0317] After soaking in the dsRNA solutions for 24 hr at 27 C., the larvae were transferred into new containers (300 larvae/1500 mL of chlorine-free tap water), and were provided agarose cubes containing 300 g of dsRNA once a day for a total of four days. The larvae were reared until adult stage. For bioassays purpose only females up to five days old are used. See
[0318] C) Larvae Feeding with Food-Containing dsRNA Only
[0319] Third instar larvae were fed (in groups of 300 larvae) in a final volume of 1500 mL of chlorine-free tap water with agarose cubes containing 300 g of dsRNA once a day for a total of four days. The larvae were reared until adult stage. For bioassays purpose only females up to five days old are used. See
[0320] Bioassay with Pyrethroid
[0321] CDC Bottle Bioassays
[0322] Bottles were prepared following the Brogdon and McAllister (1998) protocol [Brogdon and McAllister (1998) Emerg Infect Dis 4:605-613]. Fifteen-twenty non-blood-fed females from each site were introduced in 250 mL glass bottles impregnated with different concentrations of deltamethrin (Sigma-Aldrich) in 1 ml acetone. Each test consisted of four impregnated bottles and one control bottle. The control bottle contained acetone with no insecticide. At least three tests were conducted for each insecticide and population. Immediately prior to use, all insecticide solutions were prepared fresh from stock solutions. At 15, 30 and 45 min intervals, the number of live and dead mosquitoes in each bottle was recorded. The mortality criteria included mosquitoes with difficulties flying or standing on the bottle's surface. Mosquitoes that survived the appropriate dose for insecticide were considered to be resistant [Brogdon and McAllister (1998), supra].
[0323] Preparation of Mosquito Larval Food Containing dsRNA
[0324] Cubes of dsRNA-containing mosquito food were prepared as follows: First, 300 g of dsRNA were mixed with 30 g of Polyethylenimine 25 kD linear (Polysciences) in 200 L of sterile water. Then, a suspension of ground mosquito larval food (6 grams/100 mL) was prepared with 2% agarose (Fisher Scientific). The food/agarose mixture was heated to 55 C. and 200 L of the mixture was then transferred to the tubes containing 200 L of dsRNA+PEI or water only (control). The mixture was then allowed to solidify into a gel. The solidified gel containing both the food and dsRNA was cut into small pieces (approximately 1 mm thick) using a razor blade, which were then used to feed mosquito larvae in water.
[0325] RNA Isolation and dsRNA Production
[0326] Total RNA was extracted from groups of five Ac. aegypti fourth instar larvae and early adult male/female Ac. aegypti, using TRIzol (Invitrogen, Carlsbad, Calif., USA) according to the manufacturer's instructions. RNA was treated with amplification grade DNase I (Invitrogen) and 1 g was used to synthesize cDNA using a First Strand cDNA Synthesis kit (Invitrogen). The cDNA served as template DNA for PCR amplification of gene fragments using the primers listed in Table 4, below. PCR products were purified using a QIAquick PCR purification kit (Qiagen). The MEGAscript RNAi kit (Ambion) was then used for in vitro transcription and purification of dsRNAs. See Flowchart 4,
TABLE-US-00005 TABLE4 qPCRprimersanddsRNAsequencesforadulticidetargets Accession dsRNA Targetgene number sequence qPCRprimers(5-3) P-glycoprotein XM_001654442.1 SEQIDNO: F:GCGCGCTCGTTCAGTATTTA (AAEL010379) 184 (SEQIDNO:166) R:ACACCCGTTACGGCACAATA (SEQIDNO:167) Argonaute-3 XM_001652895.1 SEQIDNO: F:TCGGCATTCGTAGCTTCGTT (AAEL007823) 185 (SEQIDNO:168) R:GCAGCTGACAGTTTGCCTTC (SEQIDNO:169) Cytochromep450 JF924909.1 SEQIDNO: F:CCGTTTGGTATCGGCCCAAG (CYP9J26) XM_001649047.2 203 (SEQIDNO:204) JF924909.1 R:GTCTTTGCGCCTCGGACG (SEQIDNO:205) Sodiumchannel KC107440.1 SEQIDNO: F:CTGGAGTCGGTGAGCGAAA (AAEL008297) XM_001653136.1 187 (SEQIDNO:172) R:TACGTATCGTAAACGCGCTC (SEQIDNO:173)
[0327] qPCR Analysis
[0328] Approximately 1000 ng first-strand cDNA obtained as described previously was used as template. The qPCR reactions were performed using SYBR Green PCR Master Mix (Applied Biosystems) following the manufacturer's instructions. Briefly, approximately 50 cDNA and gene-specific primers (600 nM) were used for each reaction mixture. qPCR conditions used were 10 min at 95 C. followed by 35 cycles of 15 s at 94 C., 15 s at 54 C. and 60 s at 72 C. The ribosomal protein S7 and tubulin were used as the reference gene to normalize expression levels amongst the samples. Raw quantification cycle (Cq) values normalized against those of the tubulin and S7 standards were then used to calculate the relative expression levels in samples using the 2.sup.Ct method [Livak & Schmittgen, (2001) Methods. 25(4):402-8.). Results (meanSD) are representative of at least two independent experiments performed in triplicate.
Results
Characterization of Insecticide Resistance Using Two Different Strains of Aedes aegypti Mosquitoes
[0329] Vector control strategies employed for Aedes control are mainly anti-larval measures, source reduction and use of adulticides (pyrethroids). Pyrethroids are a major class of insecticides, which show low mammalian toxicity and fast knockdown activity. Unfortunately, the intensive use of pyrethroids, including their indirect use in agriculture, has led to reports of reduced efficacy. One of the mechanisms of resistance in insects against pyrethroids is knockdown resistance (kdr) which is conferred by mutation(s) in the target site, the voltage gated sodium channel (VGSC). Several kdr mutations have been reported in many insects of agricultural and medical importance including Ae. aegypti. In Ae. Aegypti, eleven non-synonymous mutations at nine different loci have been reported [Med Vet Ent 17: 87-94; Insect Mol Biol 16: 785-798; Insect Biochem Mol Biol 39: 272-278], amongst which mutations at three loci, i.e., Iso1011 (IRM/V) and Val1016 (VRG/I) in domain II and F1534 (FRC) in domain III are most commonly reported as contributing to pyrethroid resistance.
[0330] Using a population of mosquitoes that shows increased pyrethroid resistance, the present inventors target (during larval stage) several genes associated with resistance to pyrethroid in order to break resistance to insecticide at the adult stage.
[0331] A diagnostic dosage (DD) was established for the insecticide using the Rockfeller reference susceptible Ae. aegypti strain and a resistance threshold (RT), time in which 98-100% mortality was observed in the Rockfeller strain, was then calculated. Using the DD (2 g/mL of deltamethrin) (
[0332] To further confirm the resistance status of the Rio de Janeiro strain, the kdr mutations reported as contributing to pyrethroid resistance were assessed. In
Silencing of Sodium Channel During Larval Development Increases the Susceptibility of Adult Mosquitoes to Pyrethroid
[0333] Using the first approach (soaking with naked dsRNA), mosquito larvae (RJ strain) were treated with three different dsRNA: Ago3, P-glycoprotein and Sodium channel. Treatment with dsRNA against sodium channel increased substantially the susceptibility of mosquitoes to the insecticide (
[0334] In order to test the second approach (soaking with naked dsRNA plus additional larvae feeding with food-containing dsRNA), mosquito larvae (L3) were first soaked with dsRNA (sodium channel, 0.5 g/L) for 24 hours. Then, larvae were treated 4 times with food-containing dsRNA and reared until adult stage. Although there was no obvious advantage in using this approach when compared to soaking with naked dsRNA alone, treatment with dsRNA against sodium channel increased the susceptibility of mosquitoes to deltamethrin (
[0335] This approach was also tested using dsRNA to target Cytochrome p450 (CYP9J26). As can be seen in the
[0336] It is important to note that that 24 and 48 hours after the end of dsRNA treatment, decreased mRNA levels were detected in mosquito adults that were treated with PgP, Ago3 or sodium channel dsRNA as larvae (
[0337] Although the invention has been described in conjunction with specific embodiments thereof, it is evident that many alternatives, modifications and variations will be apparent to those skilled in the art. Accordingly, it is intended to embrace all such alternatives, modifications and variations that fall within the spirit and broad scope of the appended claims.
[0338] All publications, patents and patent applications mentioned in this specification are herein incorporated in their entirety by reference into the specification, to the same extent as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated herein by reference. In addition, citation or identification of any reference in this application shall not be construed as an admission that such reference is available as prior art to the present invention. To the extent that section headings are used, they should not be construed as necessarily limiting.