Aβ protofibril binding antibodies
09573994 · 2017-02-21
Assignee
Inventors
Cpc classification
A61P9/10
HUMAN NECESSITIES
C07K2317/94
CHEMISTRY; METALLURGY
C07K2317/24
CHEMISTRY; METALLURGY
A61P21/00
HUMAN NECESSITIES
A61P25/28
HUMAN NECESSITIES
International classification
A61K39/395
HUMAN NECESSITIES
Abstract
The present invention relates to the amyloid beta peptide (A) and more specifically to antibodies binding to A protofibrils and their use in therapy and/or prophylactic treatment of Alzheimer's disease and other disorders associated with A protein aggregation. Further the invention may relate to diagnosis of such diseases as well as monitoring of disease progression by use of the antibodies of the invention. Further, the invention may relate to veterinary use of the antibodies of the invention.
Claims
1. An antibody or antigen binding fragment thereof having affinity against A protofibrils, wherein the antibody or antigen binding fragment thereof has a variable light chain according to SEQ ID NO: 8, wherein x.sub.1 (Xaa at position 17 of SEQ ID NO:8) is selected from A, D, E and Q, or a functional analogue thereof; x.sub.2 (Xaa at position 79 of SEQ ID NO:8) is selected from R, T, K, A and G, or a functional analogue thereof; x.sub.3 (Xaa at position 82 of SEQ ID NO:8) is selected from R, S, C, G and N, or a functional analogue thereof; y.sub.1 (Xaa at position 13 of SEQ ID NO:8) is selected from V and A; y.sub.2 (Xaa at position 21 of SEQ ID NO:8) is selected from I and V; y.sub.3 (Xaa at position 81 of SEQ ID NO:8) is selected from S and Q; y.sub.4 (Xaa at position 84 of SEQ ID NO:8) is selected from E and D; and optionally a variable heavy chain according to SEQ ID NO: 14, wherein z.sub.1 (Xaa at position 37 of SEQ ID NO:14) is selected from V and I; z.sub.2 (Xaa at position 38 of SEQ ID NO:14) is selected from R and Q; and z.sub.3 (Xaa at position 40 of SEQ ID NO:14) is selected from A, N and T; with the exception for the combination x.sub.1=A, x.sub.2=R and x.sub.3=R.
2. The antibody or antigen binding fragment according to claim 1, wherein x.sub.1 is selected from A, D, E and Q; x.sub.2 is selected from R, T, K, A and G; x.sub.3 is selected from R, S, C, G and N; y.sub.1 is selected from V and A; y.sub.2 is selected from I and V; y.sub.3 is selected from S and Q; and y.sub.4 is selected from E and D; with the exception for the combination x.sub.1=A, x.sub.2=R and x.sub.3=R.
3. The antibody or antigen binding fragment according to claim 1, wherein x.sub.1 is D; x.sub.2 is T; x.sub.3 is R; y.sub.1 is selected from V and A; y.sub.2 is selected from V and I; y.sub.3 is selected from Q and S; y.sub.4 is selected from D and E; z.sub.1 is V; z.sub.2 is R; and z.sub.3 is selected from N, T and A; with exclusion of the combination wherein y.sub.1 is V, y.sub.2 is I, y.sub.3, is S, y.sub.4 is E, z.sub.1 is V, z.sub.2 is R and z.sub.3 is A.
4. An antibody or antigen binding fragment thereof, according to claim 1, comprising a variable light chain comprising the amino acid sequence as set out in SEQ ID NO: 9; and a variable heavy chain comprising the amino acid sequence as set out in SEQ ID NO: 15.
5. An antibody or antigen binding fragment thereof, according to claim 1, comprising a variable light chain comprising the amino acid sequence as set out in SEQ ID NO: 10; and a variable heavy chain comprising the amino acid sequence as set out in SEQ ID NO: 15.
6. An antibody or antigen binding fragment thereof, according to claim 1, comprising a variable light chain comprising the amino acid sequence as set out in SEQ ID NO: 11; and a variable heavy chain comprising the amino acid sequence as set out in SEQ ID NO: 15.
7. An antibody or antigen binding fragment thereof, according to claim 1, comprising a variable light chain comprising the amino acid sequence as set out in SEQ ID NO: 12; and a variable heavy chain comprising the amino acid sequence as set out in SEQ ID NO: 15.
8. An antibody or antigen binding fragment thereof, according to claim 1, comprising a variable light chain comprising the amino acid sequence as set out in SEQ ID NO: 9; and a variable heavy chain comprising the amino acid sequence as set out in SEQ ID NO: 16.
9. An antibody or antigen binding fragment thereof, according to claim 1, comprising a variable light chain comprising the amino acid sequence as set out in SEQ ID NO: 10; and a variable heavy chain comprising the amino acid sequence as set out in SEQ ID NO: 16.
10. An antibody or antigen binding fragment thereof, according to claim 1, comprising a variable light chain comprising the amino acid sequence as set out in SEQ ID NO: 11; and a variable heavy chain comprising the amino acid sequence as set out in SEQ ID NO: 16.
11. The antibody or antigen binding fragment according to claim 1, wherein the antibody or the antigen binding fragment comprises an IgG heavy chain constant region.
12. A pharmaceutical composition comprising the antibody or antigen binding fragment according to claim 2, together with a pharmaceutically acceptable excipient and/or diluent.
13. A method of reducing the amount of A protofibrils in a subject, comprising administering to said subject a therapeutically effective amount of the antibody or antigen binding fragment according to claim 2.
14. The method according to claim 13, wherein the subject is a veterinary subject.
15. A method for treatment of Alzheimer's disease or another disorder associated with A protein aggregation in a subject having said disease or disorder, comprising administering to said subject a therapeutically effective amount of the antibody or antigen binding fragment according to claim 2.
16. A method for treatment of Down syndrome (DS) in a subject comprising administering to said subject a therapeutically effective amount of the antibody or antigen binding fragment according to claim 2.
17. A method for measuring the amount of A protofibrils and/or aggregated A protein in a person, comprising contacting the person's tissue or body fluid, in vivo or in vitro, with the antibody or antigen binding fragment according to claim 2 and measuring the amount of antibody or antigen binding fragment bound to said A protofibrils and/or aggregated A protein.
18. A method for diagnosis of Alzheimer's disease in a person having or at risk of developing the disease, comprising contacting the person's tissue or body fluid, in vivo or in vitro, with the antibody or antigen binding fragment according to claim 2, or a fragment thereof, and measuring the amount of said antibody or antigen binding fragment bound to aggregated A protein.
19. A method for diagnosis of Down syndrome (DS) in a person, comprising contacting the person's tissue or body fluid, in vivo or in vitro, with the antibody or antigen binding fragment according to claim 2, and measuring the amount of said antibody or antigen binding fragment bound to aggregated A protein.
20. An antibody or antigen binding fragment thereof having affinity against A protofibrils, wherein the antibody or antigen binding fragment thereof comprises a variable light chain comprising the amino acid sequence as set out in SEQ ID NO: 12 and a variable heavy chain comprising the amino acid sequence as set out in SEQ ID NO: 16.
21. The antibody according to claim 20, wherein the antibody or antigen binding fragment thereof comprises an IgG heavy chain constant region.
22. A pharmaceutical composition comprising the antibody or antigen binding fragment thereof according to claim 20, together with a pharmaceutically acceptable excipient and/or diluent.
23. A method of reducing the amount of A protofibrils in a subject, comprising administering to said subject a therapeutically effective amount of the antibody or antigen binding fragment thereof according to claim 20.
24. A method for treatment of Alzheimer's disease or another disorder associated with A protein aggregation in a subject having said disease or disorder, comprising administering to said subject a therapeutically effective amount of the antibody or antigen binding fragment thereof according to claim 20.
25. A method for treatment of Alzheimer's disease in a subject having Alzheimer's disease, comprising administering to said subject a therapeutically effective amount of the antibody or antigen binding fragment thereof according to claim 20.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1)
(2)
(3)
(4)
(5)
(6)
(7)
(8)
(9)
(10)
(11)
(12) The mutations A17D, R79T and R82S, represent positions in the BAN2401 antibody, wherein amino acids in positions 17, 79 and 82 are mutated in the variable light chain.
(13) With BAN2401 is meant a humanized monoclonal antibody of the mouse antibody mAb158 comprising a variable light chain with an amino acid sequence as set out in SEQ ID NO: 7 and a variable heavy chain as set out in SEQ ID NO: 13. Both BAN2401 and mAb158 and their characteristics, including VL-CDR1-3 and VH-CDR1-3 are described in EP2004688. BAN2401 is excluded from the present invention.
(14) With the following abbreviations is meant: BAN2401: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 7; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 13. A17D: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 19 and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 13. A17D/R79T: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 20 and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 13. A17D/R79T/R82S: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 21 and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 13. A17D/R82S: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 22 and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 13. A17D/R79T_DI 1: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 9; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 15. A17D/R79T_DI 2: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 10; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 15. A17D/R79T_DI 3: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 11; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 15. A17D/R79T_DI 4: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 12; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 15. A17D/R79T_DI 5: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 9; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 16. A17D/R79T_DI 6: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 10; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 16. A17D/R79T_DI 7: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 11; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 16. A17D/R79T_DI 8: an antibody comprising a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 12; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 16.
(15) An antibody, or an antigen binding fragment thereof, according to the present invention comprises, in the light variable chain, in position 17 (Kabat position 17) the amino acid A, D, E, Q or a functional analogue, in position 79 (Kabat position 74) amino acid R, T, K, A, G or a functional analogue and in position 82 (Kabat position 77) amino acid R, S, C, G, N or a functional analogue. A functional analogue is an amino acid providing a lower pI value of the antibody compared to A (position 17) resp. R (position 79 and 82) without negatively affecting the binding to the antigen.
(16) The amino acid sequences in the present disclosure are represented as follows:
(17) SEQ ID NO: 1: variable heavy chain VH-CDR1 of BAN2401.
(18) SEQ ID NO: 2: variable heavy chain VH-CDR2 of BAN2401.
(19) SEQ ID NO: 3: variable heavy chain VH-CDR3 of BAN2401.
(20) SEQ ID NO: 4: variable light chain VL-CDR1 of BAN2401.
(21) SEQ ID NO: 5: variable light chain VL-CDR2 of BAN2401.
(22) SEQ ID NO: 6: variable light chain VL-CDR3 of BAN2401.
(23) SEQ ID NO: 7: variable light chain of BAN2401.
(24) SEQ ID NO: 8: generic variable light chain sequence in antibodies of the invention.
(25) SEQ ID NO: 9: specific variable light chain sequence in antibodies of the invention.
(26) SEQ ID NO: 10: specific variable light chain sequence in antibodies of the invention.
(27) SEQ ID NO: 11: specific variable light chain sequence in antibodies of the invention.
(28) SEQ ID NO: 12: specific variable light chain sequence in antibodies of the invention.
(29) SEQ ID NO: 13: variable heavy chain of BAN2401.
(30) SEQ ID NO: 14: generic variable heavy chain sequence in antibodies of the invention.
(31) SEQ ID NO: 15: specific variable heavy chain sequence in antibodies of the invention.
(32) SEQ ID NO: 16: specific variable heavy chain sequence in antibodies of the invention.
(33) SEQ ID NO: 17: specific variable heavy chain sequence in antibodies of the invention.
(34) SEQ ID NO: 18: specific variable heavy chain sequence in antibodies of the invention.
(35) SEQ ID NO: 19: specific variable light chain sequence in antibodies of the invention.
(36) SEQ ID NO: 20: specific variable light chain sequence in antibodies of the invention.
(37) SEQ ID NO: 21: specific variable light chain sequence in antibodies of the invention.
(38) SEQ ID NO: 22: specific variable light chain sequence in antibodies of the invention.
(39) SEQ ID NO: 23: amino acid sequence of human IgG1 constant region comprised in antibodies of the invention.
(40) SEQ ID NO: 24: amino acid sequence of human K chain constant region comprised in antibodies of the invention.
(41) The variable light chain (SEQ ID NO: 7) of BAN2401 and the antibodies of the invention comprises the three CDR-sequences (VL-CDR1-3):
(42) TABLE-US-00002 VL-CDR1: SEQIDNO:4 RSSQSIVHSNGNTYLE VL-CDR2: SEQIDNO:5 KVSNRFS VL-CDR3: SEQIDNO:6 FQGSHVPPT
and the variable heavy chain (SEQ ID NO: 13) of BAN2401 and the antibodies of the invention, comprises the three CDR-sequences (VH-CDR1-3):
(43) TABLE-US-00003 VH-CDR1: SEQIDNO:1 SFGMH VH-CDR2: SEQIDNO:2 YISSGSSTIYYGDTVKG VH-CDR3: SEQIDNO:3 EGGYYYGRSYYTMDY
(44) According to one aspect of the invention, antibodies binding to A protofibrils are provided, having the following CDR sequence combinations:
(45) TABLE-US-00004 VH-CDR1: SEQIDNO:1 SFGMH VH-CDR2: SEQIDNO:2 YISSGSSTIYYGDTVKG VH-CDR3: SEQIDNO:3 EGGYYYGRSYYTMDY VL-CDR1: SEQIDNO:4 RSSQSIVHSNGNTYLE VL-CDR2: SEQIDNO:5 KVSNRFS VL-CDR3: SEQIDNO:6 FQGSHVPPT
and comprising the variable light chain with SEQ ID NO: 8, wherein x.sub.1 is A, D, E, Q or a functional analogue, x.sub.2 is R, T, K, A, G or a functional analogue and x.sub.3 is R, S, C, G, N or a functional analogue, with the exception for the combination x.sub.1=A, x.sub.2=R and x.sub.3=R.
(46) A functional analogue is an amino acid providing a lower pI value of the antibody compared to A (x.sub.1) resp. R (x.sub.2 and x.sub.3) without negatively affecting the binding to the antigen.
(47) The variable heavy chain has the amino acid sequence presented in SEQ ID NO: 14, comprising the z.sub.1, z.sub.2 and z.sub.3 in any combination and wherein
(48) z.sub.1 is selected from V and I;
(49) z.sub.2 is selected from R and Q; and
(50) z.sub.3 is selected from A, N and T;
(51) with the exception for the combination z.sub.1=V, z.sub.2=R and z.sub.3=A.
(52) It should be pointed out that based on this teaching, the identification of a functional analogue to the specific amino acids defined above for each of the positions is easily done by a person skilled in the art, as methods for introducing an amino acid in a specific position in accordance with the present invention, as well as testing the resulting product, e.g. with regard to affinity for A protofibrils and other characteristics of importance, are disclosed, see below.
(53) Accordingly, in one aspect of the invention there is provided an antibody, or antigen binding fragment thereof having affinity against A protofibrils, wherein the antibody, or antigen binding fragment thereof has a variable light chain according to SEQ ID NO: 8, wherein
(54) x.sub.1 is selected from A, D, E and Q, or a functional analogue thereof;
(55) x.sub.2 is selected from R, T, K, A and G, or a functional analogue thereof;
(56) x.sub.3 is selected from R, S, C, G and N, or a functional analogue thereof;
(57) y.sub.1 is selected from V and A;
(58) y.sub.2 is selected from I and V;
(59) y.sub.3 is selected from S and Q;
(60) y.sub.4 is selected from E and D; and optionally
(61) a variable heavy chain according to SEQ ID NO: 14, wherein
(62) z.sub.1 is selected from V and I;
(63) z.sub.2 is selected from R and Q; and
(64) z.sub.3 is selected from A, N and T;
(65) with the exception for the combination x.sub.1=A, x.sub.2=R and x.sub.3=R.
(66) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein
(67) x.sub.1 is selected from A, D, E and Q;
(68) x.sub.2 is selected from R, T, K, A and G;
(69) x.sub.3 is selected from R, S, C, G and N;
(70) y.sub.1 is selected from V and A;
(71) y.sub.2 is selected from I and V;
(72) y.sub.3 is selected from S and Q;
(73) y.sub.4 is selected from E and D; and
(74) a variable heavy chain according to SEQ ID NO: 14, wherein
(75) z.sub.1 is selected from V and I;
(76) z.sub.2 is selected from R and Q; and
(77) z.sub.3 is selected from A, N and T;
(78) with the exception for the combination x.sub.1=A, x.sub.2=R and x.sub.3=R.
(79) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein the light chain comprises a combination of mutations selected from:
(80) x.sub.1 and (y.sub.1 and/or y.sub.2);
(81) x.sub.1 and (y.sub.1 and/or y.sub.2) and x.sub.2 and (y.sub.3 and/or y.sub.4);
(82) x.sub.1 and (y.sub.1 and/or y.sub.2) and x.sub.2 and x.sub.3 and (y.sub.3 and/or y.sub.4);
(83) x.sub.1 and (y.sub.1 and/or y.sub.2) and x.sub.3 and (y.sub.3 and/or y.sub.4);
(84) x.sub.2 (y.sub.3 and/or y.sub.4);
(85) x.sub.2 and x.sub.3 and (y.sub.3 and/or y.sub.4); and
(86) x.sub.3 and (y.sub.3 and/or y.sub.4);
(87) with the exception for the combination x.sub.1=A, x.sub.2=R and x.sub.3=R.
(88) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein the variable light chain comprises one or more mutations, selected from:
(89) x.sub.1 is D and (y.sub.1 and/or y.sub.2);
(90) x.sub.1 is D and (y.sub.1 and/or y.sub.2), x.sub.2 is T and (y.sub.3 and/or y.sub.4);
(91) x.sub.1 is D and (y.sub.1 and/or y.sub.2), x.sub.2 is T, x.sub.3 is S and (y.sub.3 and/or y.sub.4);
(92) x.sub.1 is D and (y.sub.1 and/or y.sub.2) and x.sub.3 is S and (y.sub.3 and/or y.sub.4);
(93) x.sub.2 is T (y.sub.3 and/or y.sub.4);
(94) x.sub.2 is T and x.sub.3 is S and (y.sub.3 and/or y.sub.4); and
(95) x.sub.3 is S and (y.sub.3 and/or y.sub.4);
(96) wherein y.sub.1 is V or A and y.sub.2 is V or I, with exclusion of the combination y.sub.1=V and y.sub.2=I; y.sub.3 is S or Q and y.sub.4 is E or D with exclusion of the combination y.sub.3=S and y.sub.4=E.
(97) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein y.sub.1 is A, y.sub.2 is V, y.sub.3 is Q and y.sub.4 is D.
(98) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein
(99) x.sub.1 is D;
(100) x.sub.2 is T;
(101) x.sub.3 is R;
(102) y.sub.1 is selected from V and A;
(103) y.sub.2 is selected from V and I;
(104) y.sub.3 is selected from Q and S;
(105) y.sub.4 is selected from D and E;
(106) z.sub.1 is V;
(107) z.sub.2 is R; and
(108) z.sub.3 is selected from N, T and A;
(109) with exclusion of the combination wherein y.sub.1 is V, y.sub.2 is I, y.sub.3, is S, y.sub.4 is E, z.sub.1 is V, z.sub.2 is R and z.sub.3 is A.
(110) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein
(111) x.sub.1 is D;
(112) x.sub.2 is T;
(113) x.sub.3 is R;
(114) y.sub.1 is V;
(115) y.sub.2 is V;
(116) y.sub.3 is Q;
(117) y.sub.4 is E;
(118) z.sub.1 is V;
(119) z.sub.2 is R; and
(120) z.sub.3 is N.
(121) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein
(122) x.sub.1 is D;
(123) x.sub.2 is T;
(124) x.sub.3 is R;
(125) y.sub.1 is V;
(126) y.sub.2 is V;
(127) y.sub.3 is S;
(128) y.sub.4 is D;
(129) z.sub.1 is V;
(130) z.sub.2 is R; and
(131) z.sub.3 is N.
(132) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein
(133) x.sub.1 is D;
(134) x.sub.2 is T;
(135) x.sub.3 is R;
(136) y.sub.1 is A;
(137) y.sub.2 is I;
(138) y.sub.3 is Q;
(139) y.sub.4 is E;
(140) z.sub.1 is V;
(141) z.sub.2 is R; and
(142) z.sub.3 is N.
(143) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein
(144) x.sub.1 is D;
(145) x.sub.2 is T;
(146) x.sub.3 is R;
(147) y.sub.1 is A;
(148) y.sub.2 is I;
(149) y.sub.3 is S;
(150) y.sub.4 is D;
(151) z.sub.1 is V;
(152) z.sub.2 is R; and
(153) z.sub.3 is N.
(154) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein
(155) x.sub.1 is D;
(156) x.sub.2 is T;
(157) x.sub.3 is R;
(158) y.sub.1 is V;
(159) y.sub.2 is V;
(160) y.sub.3 is Q;
(161) y.sub.4 is E;
(162) z.sub.1 is V;
(163) z.sub.2 is R; and
(164) z.sub.3 is T.
(165) In one embodiment of this aspect, there is provided an antibody, or an antigen binding fragment thereof, wherein
(166) x.sub.1 is D;
(167) x.sub.2 is T;
(168) x.sub.3 is R;
(169) y.sub.1 is V;
(170) y.sub.2 is V;
(171) y.sub.3 is S;
(172) y.sub.4 is D;
(173) z.sub.1 is V;
(174) z.sub.2 is R; and
(175) z.sub.3 is T.
(176) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein
(177) x.sub.1 is D;
(178) x.sub.2 is T;
(179) x.sub.3 is R;
(180) y.sub.1 is A;
(181) y.sub.2 is I;
(182) y.sub.3 is Q;
(183) y.sub.4 is E;
(184) z.sub.1 is V;
(185) z.sub.2 is R; and
(186) z.sub.3 is T.
(187) In one aspect of this embodiment, there is provided an antibody, or an antigen binding fragment thereof, wherein
(188) x.sub.1 is D;
(189) x.sub.2 is T;
(190) x.sub.3 is R;
(191) y.sub.1 is A;
(192) y.sub.2 is I;
(193) y.sub.3 is S;
(194) y.sub.4 is D;
(195) z.sub.1 is V;
(196) z.sub.2 is R; and
(197) z.sub.3 is T.
(198) According to one aspect of the invention, each mutation x.sub.1-x.sub.3 is combined with one or more additional mutations y.sub.1-y.sub.4:
(199) when x.sub.1 is not A, the mutations y.sub.1 and/or y.sub.2 are introduced;
(200) when x.sub.2 is not R and/or x.sub.3 is not R, the mutations y.sub.3 and/or y.sub.4 are introduced; providing variable light chains comprising the following combinations of mutants compared to SEQ ID NO: 7:
(201) x.sub.1 and (y.sub.1 and/or y.sub.2); or
(202) x.sub.1 and (y.sub.1 and/or y.sub.2) and x.sub.2 and (y.sub.3 and/or y.sub.4); or
(203) x.sub.1 and (y.sub.1 and/or y.sub.2) and x.sub.2 and x.sub.3 and (y.sub.3 and/or y.sub.4); or
(204) x.sub.1 and (y.sub.1 and/or y.sub.2) and x.sub.3 and (y.sub.3 and/or y.sub.4); or
(205) x.sub.2 and (y.sub.3 and/or y.sub.4); or
(206) x.sub.2 and x.sub.3 and (y.sub.3 and/or y.sub.4); or
(207) x.sub.3 and (y.sub.3 and/or y.sub.4);
(208) wherein the parameters x and y are as defined above.
(209) In one embodiment, the light chain (SEQ ID NO: 8) of an antibody, or an antigen binding fragment thereof according to the invention comprises only one or more of the mutations x.sub.1-x.sub.3 in the light variable chain (using N-terminal numbering): A17D (x.sub.1), R79T (x.sub.2) and R82S (x.sub.3):
(210) A17D; or
(211) A17D and R79T; or
(212) A17D and R79T and R82S; or
(213) A17D and R82S; or
(214) R79T; or
(215) R79T and R82S; or
(216) R82S;
(217) wherein y.sub.1 is V, y.sub.2 is I, y.sub.3 is S and y.sub.4 is E (no changes compared to SEQ ID NO: 7).
(218) According to a further embodiment, mutations y.sub.1-y.sub.4 are introduced providing any one of the following combinations:
(219) A17D and (y.sub.1 and/or y.sub.2);
(220) A17D and (y.sub.1 and/or y.sub.2) and R79T and (y.sub.3 and/or y.sub.4);
(221) A17D and (y.sub.1 and/or y.sub.2) and R79T and R82S and (y.sub.3 and/or y.sub.4);
(222) A17D and (y.sub.1 and/or y.sub.2) and R82S (y.sub.3 and/or y.sub.4);
(223) R79T (y.sub.3 and/or y.sub.4);
(224) R79T and R82S and (y.sub.3 and/or y.sub.4);
(225) R82S and (y.sub.3 and/or y.sub.4);
(226) wherein y.sub.1 is V or A and y.sub.2 is V or I, with exclusion of the combination y.sub.1=V and y.sub.2=1, y3 is S or Q and y.sub.4 is E or D, with exclusion of the combination y.sub.3=S and Y.sub.4=E.
(227) Further specific combinations are disclosed in SEQ ID NOS: 9-12.
(228) The heavy, variable chain (VH) of antibodies according to the present invention has the amino acid sequence SEQ ID NO: 14, wherein z.sub.1 is V or I, z.sub.2 is R or Q and z.sub.3 is A, N or T, e.g. SEQ ID NO: 15-18.
(229) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain selected from an amino acid sequence as set out in any one of SEQ ID NOS: 9-12.
(230) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable heavy chain selected from an amino acid sequence as set out in any one of SEQ ID NOS: 15-18.
(231) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain selected from an amino acid sequence as set out in any one of SEQ ID NOS: 9-12; and a variable heavy chain selected from an amino acid sequence as set out in any one of SEQ ID NOS: 15-18.
(232) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 9; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 15.
(233) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 10; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 15.
(234) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 11; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 15.
(235) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 12; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 15.
(236) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 9; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 16.
(237) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 10; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 16.
(238) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 11; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 16.
(239) In one embodiment of this aspect, there is provided an antibody or an antigen binding fragment thereof, wherein the antibody or antigen binding fragment comprises a variable light chain comprising an amino acid sequence as set out in SEQ ID NO: 12; and a variable heavy chain comprising an amino acid sequence as set out in SEQ ID NO: 16.
(240) In one embodiment, the antibody or antigen binding fragment according to the present invention, comprises a heavy chain constant region selected from the group consisting of IgG1, IgG2, IgG3, IgG4, IgM, IgA and IgE constant regions or any allelic variation thereof as discussed in Kabat et al. (Kabat, E. A., et al. (1991) Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242), included herein by reference. Any of such sequences may be used in the present invention. In a more preferred embodiment, the antibody heavy chain constant region is IgG1. The amino acid sequence of human IgG1 constant region is known in the art and set out in SEQ ID NO: 23.
(241) In one embodiment, the antibody or antigen binding fragment according to the present invention comprises a light chain constant region selected from the group consisting of - and -chain constant regions or any allelic variation thereof as discussed in Kabat et al. (Kabat, E. A., et al. (1991) Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242), included herein by reference. Any of such sequences may be used in the present invention. In a more preferred embodiment, the antibody light chain constant region is K. The amino acid sequence of human K chain constant region is known in the art and set out in SEQ ID: 24.
(242) In one embodiment, the antigen binding fragment according to the present invention is a Fab fragment, or a F(ab).sub.2 fragment or a single chain Fv fragment.
(243) Antibodies or antigen binding fragments according to the invention can comprise any combination of the variable light and heavy chains defined above.
(244) According to one aspect of the invention there is provided improved antibodies, or antigen binding fragments with high affinity for A protofibrils for use in therapy e.g. by administration of one or more antibodies, or antigen binding fragments according to the invention to a patient having or at risk of developing Alzheimer's disease and other disorders associated with A protein aggregation, such as traumatic brain injury (TBI), dementia with Lewy body (DLB), Down syndrome (DS), Amyotrophic lateral sclerosis (ALS), Frontotemporal dementia, tauopathies, systemic amyloidosis, atherosclerosis and Parkinson's disease dementia (PDD). A suitable dose may vary within broad ranges, e.g. from 0.01 to 100 mg/kg/dose, depending on the medical indication and the patient's status, the route of administration, e.g. i.v., s.c., infusion or by local administration, in addition to the frequency chosen, e.g. single dose, daily, weekly, quarterly or even less frequent administration.
(245) In one aspect, there is provided an antibody, or an antigen binding fragment thereof of the invention, for use in therapy.
(246) In one aspect, there is provided an antibody, or an antigen binding fragment thereof of the invention, for use in treatment and/or prophylaxis of Alzheimer's disease and other disorders associated with A protein aggregation. Typically, such other disorders may be selected from traumatic brain injury (TBI), Lewy body dementia (LBD), Down syndrome (DS), Amyotrophic lateral sclerosis (ALS), Frontotemporal dementia, tauopathies, systemic amyloidosis, atherosclerosis and Parkinson's disease dementia (PDD).
(247) In one aspect, there is provided use of an antibody, or an antigen binding fragment thereof of the invention, in the manufacture of a medicament useful in the treatment and/or prophylaxis of Alzheimer's disease and other disorders associated with A protein aggregation. Typically, such other disorders may be selected from traumatic brain injury (TBI), Lewy body dementia (LBD), Down syndrome (DS), Amyotrophic lateral sclerosis (ALS), Frontotemporal dementia, tauopathies, systemic amyloidosis, atherosclerosis and Parkinson's disease dementia (PDD).
(248) In one aspect, there is provided a method of reducing amount of A protofibrils in persons, comprising administering to the person a therapeutically effective amount of an antibody, or an antigen binding fragment thereof of the invention.
(249) In one aspect, there is provided a method for treatment and/or prophylaxis of Alzheimer's disease and other disorders associated with A protein aggregation in a subject having or at risk of developing the disease, comprising administering to the person a therapeutically effective amount of an antibody, or an antigen binding fragment thereof, of the invention. Typically, such other disorders may be selected from traumatic brain injury (TBI), Lewy body dementia (LBD), Down syndrome (DS), Amyotrophic lateral sclerosis (ALS), Frontotemporal dementia, tauopathies, systemic amyloidosis, atherosclerosis and Parkinson's disease dementia (PDD).
(250) A subject is typically a mammal, such as a human. Other mammals represent such mammals, where veterinary use/treatment/propfylaxis would apply.
(251) In one aspect, there may be provided a method for measuring amount of A protofibrils and/or aggregated A protein in a person, comprising contacting the person's tissue or body fluid, in vivo or in vitro, with a labeled antibody, or an antigen binding fragment thereof of the invention and measuring the amount of antibodies, or antigen binding fragments bound to said A protofibrils and/or aggregated A protein. The antibodies or antigen binding fragments could be labeled with a radioactive ligand such as I.sup.131, C.sup.11, C.sup.14, H.sup.3, F.sup.18, or Gallium.sup.68, but not limited to these radioisotopes, for detection purposes.
(252) In one aspect, there may be provided a method for diagnosis of Alzheimer's disease and other disorders associated with A protein aggregation, such as traumatic brain injury (TBI), dementia with Lewy body (DLB), Down syndrome (DS), Amyotrophic lateral sclerosis (ALS), Frontotemporal dementia, tauopathies, systemic amyloidosis, atherosclerosis and Parkinson's disease dementia (PDD), in persons having or at risk of developing the disease comprising contacting the person's tissue or body fluid, in vivo or in vitro, with an antibody of the invention, or an antigen binding fragment thereof, and measuring the amount of antibody or antigen binding fragment bound to aggregated protein. Typically, said other disorders are associated with A protein aggregation may be selected from traumatic brain injury (TBI), dementia with Lewy body (DLB), Down syndrome (DS), Amyotrophic lateral sclerosis (ALS), Frontotemporal dementia, tauopathies, systemic amyloidosis, atherosclerosis and Parkinson's disease dementia (PDD). Typically, a person's body fluid or tissue would be analysed in vivo or in vitro (in a sample taken from the patient) by contact with a preparation of one or more antibodies or antigen binding fragments of the invention and the amount of antibodies or antigen binding fragments bound to A protofibrils would be measured. Quantification of protofibrils would be used in diagnosis of diseases mentioned above, follow up of various treatments as well as in the development of new medicines. Optionally, the antibodies or antigen binding fragments thereof, in such a preparation, would be labelled with an agent, which would be detected and measured by any of the techniques known in the art, e.g. analysis by ELISA, Biacore and/or imaging with SPECT, PET, MRI. The antibodies or antigen binding fragments could be labeled with a radioactive ligand such as I.sup.131, C.sup.11, C.sup.14, H.sup.3, F.sup.18 or Gallium.sup.68, but not limited to these radioisotopes, for detection purposes.
(253) According to a further aspect of the invention a pharmaceutical composition is prepared, comprising an effective amount of one or more of the antibodies or antigen binding fragment thereof according to the invention. A medical composition comprising an antibody according to the invention may comprise, in addition to an effective amount of the antibody, other components known for use in such preparations, e.g. buffers, components for preservation and stability.
(254) In another aspect there may be provided an antibody of the invention, for veterinary use. Typically, said veterinary use would include treatment and/or prophylaxis of disorders associated with A protein aggregation.
(255) According to a further aspect of the invention there may be provided therapy utilizing antibodies according to the invention in combination with symptomatic treatments, such as acetylcholine esterase inhibitors, NMDA antagonists and 5HT6 inhibitors.
(256) Combination with other disease modifying treatments, such as -secretase inhibitors (GSI), -secretase modulators (GSM), -secretase (BACE) inhibitors, BACE modulators, vaccines, other antibodies, drugs targeting tau or neuroinflammatory processes, antihypertensives, etc., offers additional possibilities for efficient therapy.
(257) Combination with nutrition products may offer additional possibilities for efficient therapy.
(258) In one aspect, there is provided a pharmaceutical composition comprising an antibody of the invention, together with pharmaceutically acceptable excipient and/or diluents, said composition further may comprise an additional, therapeutic agent. Typically, said additional therapeutic agent may be selected from acetylcholine esterase inhibitors, NMDA antagonists, 5HT6 inhibitors, GSI, GSM, BACE inhibitors, BACE modulators, vaccines, other antibodies, drugs targeting tau or neuroinflammatory processes, antihypertensives and a nutrition product. The composition may be provided as a single or sequential dose.
(259) The present invention will be illustrated by a number of non-limiting examples:
Example 1
Production of Antibodies and Methods Used
(260) Production of Reference Antibody
(261) The reference antibody BAN2401 was produced according to previously described methods in EP2004688.
(262) Production of the Antibodies of the Invention
(263) The antibodies of the invention were produced by transient and/or stable production in Chinese Hamster Ovary (CHO) cells using the CHOK1SV GS and CHOK1SV GS-KO Xceed expression systems (Lonza), respectively. The following mutants were produced by transient transfection using the CHOK1SV GS-KO Xceed expression system: A17D, A17D/R79T and A17D/R79T/R82S. The following mutants were produced by both transient and stable transfection using the CHOK1SV GS-KO Xceed expression system: A17D/R79T_DI 1, A17D/R79T_DI 2, A17D/R79T_DI 3, A17D/R79T_DI 4, A17D/R79T_DI 5, A17D/R79T_DI 6, A17D/R79T_DI 7 and A17D/R79T_DI 8. The A17D/R82S mutant was produced by stable transfection using the CHOK1SV GS expression system.
(264) Sequences of the light and heavy chain encoding regions of the mutants were synthesized by using conventional methods.
(265) For transient transfections in the CHOK1SV GS-KO Xeed expression system, light chain encoding regions were sub-cloned into the pXC-17.4 vector and heavy chain encoding regions into the pXC-18.4 vector. Expression cultures were harvested 6 days post-transfection and clarified by centrifugation and sterile filtration. The clarified cell culture supernatants were subjected to purification using Protein A chromatography. Eluted antibody was provided in PBS (pH 7.4). The products were further purified by preparative Size Exclusion Chromatography (SEC) to remove aggregates. The monomer peak collected was thereafter analysed by analytical SEC, and aggregate levels were determined to be below 2% for all products.
(266) Stable expression in the CHOK1SV GS-KO Xeed system was performed essentially according to the manufacturer's recommendations. In brief, the two vectors containing the light and heavy chains (pXC-17.4 and pXC-18.4) were ligated into one double gene vector containing both genes. CHOK1SV GS-KO cells were transfected by electroporation with the linearized double gene vector. Screening of clones and productivity screening of death cultures were analyzed by ELISA. Productions were performed with CD-CHO medium supplemented with 15% Feed A and 15% Feed B (Life Technologies). Supernatants were harvested by centrifugation and sterile filtration. The clarified cell culture supernatants were purified using Protein G chromatography and buffer exchanged to Dulbecco's PBS (Gibco).
(267) For stable transfection using the CHOK1SV GS expression system (Lonza), the heavy chain gene was ligated into the pEE6.4 vector and the light chain gene in pEE12.4 vector. The two vectors were ligated to form a double gene vector. CHOK1SV cells were transfected by electroporation with the linearized double gene vector. In essence, transfections were performed according to the manufacturer's recommendations. Screening of clones and productivity screening of death cultures were analyzed by ELISA. Productions were performed with CD-CHO medium supplemented with 15% Feed A and 15% Feed B (Life Technologies). Supernatants were harvested by centrifugation and sterile filtration. The clarified cell culture supernatants were purified using Protein G chromatography and buffer exchanged to Dulbecco's PBS (Gibco). Product quality analysis by Size Exclusion HPLC and SDS-PAGE were carried out using purified material of all mutants produced.
(268) Target Binding Analysis by Inhibition ELISA
(269) The binding characteristics towards A protofibrils and A monomers of the antibodies of the invention compared to BAN2401 were analyzed using an inhibition ELISA in which antibodies were pre-incubated in solution with A protofibrils or A monomers and then transferred to A coated ELISA plates, as described in Tucker et. al. J Alzheimers Dis. 2015; 43(2):575-88. doi: 10.3233/JAD-140741. PubMed PMID: 25096615, and references cited therein.
(270) Pharmacokinetic Studies in Wild Type Mice
(271) 8-10 weeks old female C57BL/6 mice were grouped and given single intravenous (i.v.) injections of BAN2401 or antibodies of the invention at a dosage of 10 mg/kg. Plasma from all animals was collected at time points varying from 30 minutes to 29 days post injection and used for measurements of antibody concentrations and subsequent calculations of pharmacokinetic (PK) parameters. Mice were sacrificed at the terminal plasma collection time point.
(272) Pharmacokinetic Studies in Rats
(273) 8 weeks old female Sprague Dawley rats were grouped and given single i.v. injections of BAN2401 or antibodies of the invention at a dosage of 10 mg/kg. Plasma from all animals was collected at time points varying from 30 minutes to 29 days post injection and used for measurements of antibody concentrations and subsequent calculations of PK parameters. Rats were sacrificed at the terminal plasma collection time point.
(274) Pharmacokinetic Studies in Monkeys
(275) Male cynomolgus monkeys were grouped (N=3) and subjected to single i.v. infusions of 5 mg/kg BAN2401 or 10 mg/kg of the antibodies of the invention. Serum from all animals was collected at time points varying from 5 minutes to 28 days post injection and used for measurements of antibody concentrations. Serum levels of BAN2401 and the antibodies of the invention were determined by ELISA. Biotinylated A1-42 protofibrils were added to an avidin immobilized microplate for coating. After blocking, monkey serum samples were added to the wells. After washing away any unbound substances, alkaline Phosphatase (AP) labeled goat anti-human IgG was added to the wells. Following a wash to remove any unbound reagents, p-nitrophenylphosphate, a substrate for AP, was added to the wells. The reaction was stopped with sodium hydroxide solution and absorbance was measured at 405 nm and 492 nm. Absorbance at 492 nm was subtracted from that at 405 nm. Values were translated to concentrations by means of a standard curve and used for subsequent calculations of PK parameters.
(276) Direct ELISA for Measurement of A Antibodies
(277) Levels of BAN2401 and antibodies of the invention in cell culture media, purified antibody product, and plasma collected in the mouse and rat PK studies were measured by direct ELISA for measurement of anti-A antibodies. Samples were serially diluted and incubated in microtiter plate wells coated with A1-40 to allow for BAN2401 and the antibodies of the invention to bind. Horse radish peroxidase (HRP)-conjugated goat anti-human IgG was utilized as detection antibody and TMB, a substrate for HRP, was added. The reaction was stopped by addition of 2M H.sub.2SO.sub.4, which results in a yellow color that is measured at 450 nm. The method was employed in a quantitative manner, where OD.sub.450 values are translated into concentrations by means of a standard curve.
(278) Calculations of PK Parameters by Non-Compartmental Analysis
(279) Individual terminal half-life calculations were performed using a non-compartmental model with the Phoenix WinNonLin 6.3 software (Pharsight). Area under the curve (AUC.sub.0-inf) calculations were performed with Phoenix WinNonLin using the lin-up log-down method. Group means and standard deviations of AUCs and terminal half-lives were calculated using GraphPad Prism (v 6.04).
(280) Statistical Analyses
(281) Statistical analyses of group means of individually determined terminal half-lives and AUCs were performed using the GraphPad Prism software (v. 6.04). One-way ANOVA followed by Bonferroni's multiple comparisons post-test was used in the studies. Tests were performed at significance levels * P<0.05, ** P<0.01, *** P<0.001 and **** P<0.0001.
Example 2
Target Binding Characterization
(282) A-Protofibrils Binding Preserved in A17D, A17D/R79T, A17D/R82S and A17D/R79T/R82S Compared to BAN2401
(283) The target binding profiles of the antibodies of the invention were analyzed next to BAN2401 (control) by inhibition ELISA as described in Example 1 (inhibition ELISA). Results are presented in
Example 3
Pharmacokinetic Profile of Antibodies in Mice
(284) Pharmacokinetic Study of BAN2401, A17D, A17D/R79T, A17D/R82S, A17D/R79T/R82S in Wild-Type Mice
(285) In order to study the pharmacokinetic profile of the antibodies of the invention in wild-type mice, 8-10 weeks old C57BL/6 female mice were dosed with single i.v. injections of 10 mg/kg BAN2401 (N=8), A17D (N=7), A17D/R79T (N=6), A17D/R82S (N=8) or A17D/R79T/R82S (N=7). Animals were bled after 0.5 h, 2 days, 7 days, 14 or 15 days, and 28 or 29 days and levels of BAN2401 and antibodies of the invention were analysed by ELISA using A1-40 for capture and HRP-coupled goat-anti-human IgG for detection as described in Example 1 (direct ELISA). A17D/R82S was administered in a study started at a separate occasion compared to the other antibodies. However, plasma samples from the two different studies were analyzed by ELISA at the same time to avoid inter-assay variation.
(286) As shown in the time vs concentration graphs in
(287) TABLE-US-00005 TABLE 1 Plasma PK parameters of BAN2401, A17D, A17D/R79T, A17D/R82S and A17D/R79T/R82S in mice. Half-life and AUC.sub.0-inf for all antibodies were calculated individually for all animals by non-compartmental analysis using Phoenix WinNonlin 6.3 (Pharsight) and subjected to statistical analysis by one-way ANOVA followed by Bonferroni's Multiple Comparisons post-test. Mean AUC.sub.0-inf values and mean terminal half-lives are shown in the table. Statistical differences in terminal half-life and AUC.sub.0-inf between BAN2401 and the mutants are indicated in the table, where *** denotes p < 0.001, and ****p < 0.0001. Antibody AUC.sub.0-inf (mg*h/ml) Terminal half-life (days) BAN2401 3.7 4.5 A17D 23.3**** 8.7*** A17D/R79T 40.2**** 10.7**** A17D/R82S 37.9**** 11.1**** A17D/R79T/R82S 41.0**** 10.9****
Example 4
Pharmacokinetic Profile of Antibodies in Rat
(288) Pharmacokinetic Study of BAN2401, A17D, A17D/R79T and A17D/R79T/R82S in Rats
(289) In order to study the pharmacokinetic profile of the antibodies of the invention in rats, 8 weeks old female Sprague Dawley rats were dosed with single i.v. injections of 10 mg/kg BAN2401 (N=3), A17D (N=4), A17D/R79T (N=6) or A17D/R79T/R82S (N=5). Animals were bled after 0.5 h, 2 h, 7 h, 24 h, 2 days, 4 days, 7 days, 14 days and 29 days post injection. Levels of BAN2401 and antibodies of the invention were analysed by ELISA using A1-40 for capture and HRP-coupled goat-anti-human IgG for detection as described in Example 1 (direct ELISA). The rapid reduction of BAN2401 levels in plasma of wild-type mice during the first 48 hours post administration leading to low exposure (
(290) TABLE-US-00006 TABLE 2 Plasma PK parameters of BAN2401, A17D, A17D/R79T and A17D/R79T/ R82S in rats. Half-lives and AUC.sub.0-inf values for all antibodies were calculated individually for all animals by non-compartmental analysis using Phoenix WinNonlin 6.3 (Pharsight) and subjected to statistical analysis by one-way ANOVA followed by Bonferroni's Multiple Comparisons post-test. Mean AUC.sub.0-inf values and mean terminal half-lives of BAN2401, A17D, A17D/R79T and A17D/R79T/R82S calculated are shown in the table. Statistical differences in terminal half-life and AUC.sub.0-inf between BAN2401 and the mutants are indicated in the table, where ** denotes P < 0.01. Antibody AUC.sub.0-inf (mg*h/ml) Terminal half-life (days) BAN2401 31.1 10.2 A17D 38.0 10.9 A17D/R79T 47.6** 12.8 A17D/R79T/R82S 36.6 11.2
Example 5
Deimmunization
(291) Ex Vivo Whole Protein T Cell Assay of BAN2401, A17D, A17D/R79T and A17D/R79T/R82S
(292) In order to evaluate whether mutations introduced in the antibodies of the invention had led to an increased risk for an immunogenic response in humans, A17D, A17D/R79T and A17D/R79T/R82S were analyzed next to BAN2401 by an ex vivo whole protein T cell activation assay. The EpiScreen time course T cell assay measures the capacity of an antibody to induce CD4+ T cell responses (Antitope Ltd, Cambridge, UK). The samples were tested against CD8+ depleted peripheral blood mononucleated cells (PBMC) from a cohort of 25 healthy donors (Donor 1-25, Table 3) with a broad HLA-diversity. The ability of the antibodies to induce CD4+ T cell responses was measured by proliferation and IL-2 secretion.
(293) Results from the study indicated that the overall potential risk of immunogenicity was low for BAN2401 and borderline low for A17D with 8% and 12% of donors responding positively, respectively (Table 3). Analysis of A17D/R79T and A17D/R79T/R82S revealed unexpectedly somewhat higher risks of immunogenicity, as the combined frequency of proliferation and IL-2 secretion was 24% and 20% of the study cohort, respectively.
(294) TABLE-US-00007 TABLE 3 Summary of healthy donor T cell proliferation and IL-2 ELISpot responses for BAN2401, A17D, A17D/R79T and A17D/R79T/R82S. Positive T cell responses for proliferation are indicated with a P and positive ELISpot responses are indicated with an E. Borderline responses are indicated (*). Correlation is expressed as the percentage of proliferation responses also positive in the ELISpot assay. To be considered a response in one donor, both the proliferation and ELISpot assays have to be positive. Humanized A33 (Welt S et al., Clin Cancer Res. 2003 April; 9(4): 1347-53., 2003), which is a therapeutic antibody control with a known mean immunogenicity of 32% in the clinic, typically stimulates 20-30% of donors to respond positively in the T cell proliferation assay. Phytohaemagglutinin (PHA) and Keyhole Limpet Hemocyanin (KLH) are potent antigens used as positive controls. BAN2401 A17D A17D/R79T A17D/R79T/R82S A33 KLH PHA Donor 1 PE PE PE Donor 2 PE P*E PE PE PE Donor 3 E* PE PE Donor 4 PE PE Donor 5 PE PE Donor 6 PE PE Donor 7 PE PE Donor 8 PE PE PE PE Donor 9 PE PE Donor 10 PE PE Donor 11 E PE Donor 12 P* PE Donor 13 PE PE PE Donor 14 PE PE PE PE PE Donor 15 P PE PE Donor 16 PE P P P E PE PE Donor 17 PE PE PE PE PE Donor 18 PE PE Donor 19 PE PE PE PE PE PE Donor 20 PE PE Donor 21 P PE* P P PE PE Donor 22 E PE Donor 23 PE PE PE Donor 24 E PE PE PE Donor 25 PE PE Proliferation % 12 16 32 28 24 92 100 ELISpot % 8 12 28 24 24 96 100 Proliferation 8 12 24 20 20 88 100 and ELISpot % Correlation % 67 75 75 71 83 96 100
T-Cell Epitope Screening of BAN2401 in Silico
(295) To further address the immunogenicity risk inferred by the mutations and to find relevant positions to deimmunize, BAN2401, A17D, A17D/R79T, A17D/R82S and A17D/R79T/R82S were subjected to in silico T cell epitope screening. Variable region sequences of BAN2401, A17D, A17D/R79T, A17D/R82S and A17D/R79T/R82S were provided to Antitope Ltd (Cambridge, UK) for analysis by their proprietary in silico technologies iTope and TCED. Non-germline promiscuous MHC class II binding sequences were identified in both the heavy chains and the light chains of the antibodies analyzed. BLAST search analysis of the TCED revealed two partial matches to previously identified epitopes in the database of peptides with known immunogenicity ex vivo.
(296) Ex Vivo T Cell Epitope Mapping of BAN2401, A17D, A17D/R79T, A17D/R82S and A17D/R79T/R82S
(297) In order to verify the immunogenicity risk inferred by the new mutations and to identify positions to deimmunize, 44 peptides (15-mers) derived from variable regions of BAN2401, A17D, A17D/R79T, A17D/R82S and A17D/R79T/R82S were assessed for the presence of CD4+ T cell epitopes using EpiScreen T cell epitope mapping technology (Antitope Ltd, Cambridge, UK). The peptides were chosen to cover all the potential T cell epitopes identified by the in silico screen and also the two regions covering the areas of the A17D substitution and the R79T and R82S substitutions (including peptides with or without mutations).
(298) The peptides were tested against a cohort of 11 human donors selected from the Episcreen whole antibody analysis described in the previous section. T cell responses were measured for each donor against each peptide using a proliferation assay that measures .sup.3[H]-thymidine incorporation. The results identified the presence of three potential T cell epitopes in the sequences (Epitope 1, 5 and 8). Epitope 1 present in the heavy chain was considered weak. Epitope 5 including the A17D mutation was weak and no donor responses were observed to the related peptide of the wild-type BAN2401 sequence. Epitope 8 was the most significant epitope based upon frequency of T cell responses and was identified in the peptides of antibodies A17D/R79T, A17D/R82S and A17D/R79T/R82S but not in wild-type BAN2401 or A17D.
(299) The data from the ex vivo T cell epitope mapping supported the conclusion from the whole antibody time course T cell assay that A17D/R79T and A17D/R79T/R82S are associated with an increased overall risk of immunogenicity. In addition, also A17D/R82S (not included in the whole antibody T cell assay) appeared to have increased risk of immunogenicity due to the R82S mutation in Epitope 8.
(300) Deimmunization of Peptides Identified as Potential T Cells Epitopes by Ex Vivo T Cell Epitope Mapping
(301) In general, deimmunization is achieved by changing a single amino acid in one of the important anchoring positions (p1, p4, p6, p7 and p9 of a 9-mer) of the potential MHC class II binding peptide. Specific deimmunizing mutations in the three epitopes identified in the ex vivo peptide mapping (Epitope 1, 5 and 8) described above were chosen. The substitutions were chosen based on anticipated reduced binding affinity of the peptide to the binding pocket of the MHC class II molecule. Two deimmunizing substitutions were tested for each peptide that had been indicated as potentially immunogenic, and these peptides were analyzed alongside with the original peptides of BAN2401, A17D, A17D/R79T, A17D/R82S and A17D/R79T/R82S using the Episcreen peptide mapping technology.
(302) T cell responses were measured for each donor against each peptide using a proliferation assay that measures .sup.3[H]-thymidine incorporation. The results from this study confirmed the earlier findings, but all epitopes (Epitope 1, 5 and 8) were considered weak in this study (Table 4). Nevertheless, all deimmunizing substitutions successfully reduced the risk of immunogenicity for the peptides covering the three epitopes compared to the original peptides, with no or very few T cell responders (Table 4). This indicates that the chosen substitutions were effective and that the deimmunizations were successful.
(303) TABLE-US-00008 TABLE4 Deimmunizationresultsatpeptidelevelofepitopesidentifiedasimmunogenicusing theEpiScreen Tcellepitopemappingtechnology.Shownarethepeptidesderivedfrom BAN2401andtheantibodiesoftheinventionthatwereidentifiedasimmunogenic,andthe samepeptideswithdeimmunizationsubstitutionsintroduced(underlined).Half-life improvingmutationsareshowninbold.Alldeimmunizedpeptidesweretestedintheexvivo Tcellassayandtheresultsareshownintherightmostcolumn(donorresponsefrequency). Epitope Antibodyofpeptideorigin Response area anddeimmunizationsubstitutions Peptide frequency(%) 1. BAN2401andantibodiesoftheinvention* SFGMHWVRQAPGKGL 12 A.fwdarw.N SFGMHWVRQNPGKGL 0 A.fwdarw.T SFGMHWVRQTPGKGL 4 5. Allantibodiesoftheinvention(A17Dmutation) PVTPGDPASISCRSS 16 I.fwdarw.V PVTPGDPASVSCRSS 0 V.fwdarw.A PATPGDPASISCRSS 0 8. A17D/R79T(R79Tmutation) SGSGTDFTLTISRVE 16 S.fwdarw.Q SGSGTDFTLTIQRVE 4 E.fwdarw.D SGSGTDFTLTISRVD 4 8. A17D/R79T(R79Tmutation) GTDFTLTISRVEAED 20 S.fwdarw.Q GTDFTLTIQRVEAED 0 E.fwdarw.D GTDFTLTISRVDAED 0 8. A17D/R79T/R82S(R79T/R82Smutations) SGSGTDFTLTISSVE 12 S.fwdarw.Q SGSGTDFTLTIQSVE 0 E.fwdarw.D SGSGTDFTLTISSVD 0 8. A17D/R79T/R82S(R79T/R82Smutations) GTDFTLTISSVEAED 16 S.fwdarw.Q GTDFTLTIQSVEAED 0 E.fwdarw.D GTDFTLTISSVDAED 0 8. A17D/R82S(R82Smutation) SGSGTDFTLRISSVE 12 S.fwdarw.Q SGSGTDFTLRIQSVE 0 E.fwdarw.D SGSGTDFTLRISSVD 4 8. A17D/R82S(R82Smutation) GTDFTLRISSVEAED 16 S.fwdarw.Q GTDFTLRIQSVEAED 4 E.fwdarw.D GTDFTLRISSVDAED 4 *Non-deimmunized antibodies
Design and Production of Deimmunized Variants of A17D/R79T
(304) Eight deimmunized variants of A17D/R79T were designed based on the results from the T cell epitope mapping and peptide deimmunization described above. In all three epitopes identified as potentially immunogenic, deimmunization mutations shown to reduce immunogenicity in the ex vivo T cells epitope mapping were introduced in the combinations indicated in Table 5.
(305) TABLE-US-00009 TABLE 5 Summary of the eight deimmunized variants of the double mutant A17D/R79T. Deimmunization mutations for the epitopes 1, 5 and 8, chosen and functionally verified in the ex vivo T cell assay on peptide level, are indicated for the specific antibodies. N-terminal numbering has been used. VH = variable heavy chain, VL = variable light chain. Deimmu- Deimmu- Deimmu- nization nization nization A17D/R79T in epitope in epitope in epitope variants 1 (VH) 5 (VL) 8 (VL) A17D/R79T _DI 1 A40N I21V S81Q A17D/R79T _DI 2 A40N I21V E84D A17D/R79T _DI 3 A40N V13A S81Q A17D/R79T _DI 4 A40N V13A E84D A17D/R79T _DI 5 A40T I21V S81Q A17D/R79T _DI 6 A40T I21V E84D A17D/R79T _DI 7 A40T V13A S81Q A17D/R79T _DI 8 A40T V13A E84D
Example 6
Target Binding Characterization of Deimmunized Antibodies
(306) A-Protofibril Binding Preserved in Eight Deimmunized Variants of A17D/R79T (A17D/R79T_DI 1-8) Compared to BAN2401
(307) The target binding profiles of the eight deimmunized variants of A17D/R79T (A17D/R79T_DI 1-8) were analyzed next to BAN2401 (control) by inhibition method described in Example 1 (Inhibition ELISA). Results are presented in
Example 7
Pharmacokinetic Profile of Deimmunized Antibodies in Mice
(308) Pharmacokinetic Study of BAN2401, A17D/R79T and Eight Deimmunized Variants of A17D/R79T (A17D/R79T_DI 1-8) in Wild-Type Mice
(309) In order to compare the PK profiles of the eight variants of deimmunized A17D/R79T (A17D/R79T_DI 1-8) to the PK profile of BAN2401 and A17D/R79T in wild-type mice, 8-10 weeks old C57BL/6 female mice were grouped (N=5) and subjected to single i.v. injections of 10 mg/kg antibody. Animals were bled after 0.5 h, 2 days, 7 days, 14 days and 28 days and levels of BAN2401 and antibodies of the invention were analysed by ELISA using A1-40 for capture and HRP-coupled goat-anti-human IgG for detection as described in Example 1 (direct ELISA). As shown in the time vs concentration graph in
(310) TABLE-US-00010 TABLE 6 Plasma PK parameters of BAN2401, A17D/R79T and deimmunized variants of A17D/R79T (A17D/R79T_DI 1-8) in mice. Half-life and AUC.sub.0-inf for all antibodies were calculated individually for all animals by non-compartmental analysis using Phoenix WinNonlin 6.3 (Pharsight) and subjected to statistical analysis by one-way ANOVA followed by Bonferroni's Multiple Comparisons post-test. Mean AUC.sub.0-inf and mean terminal half-lives are shown in the table. Statistical differences in terminal half-life and AUC.sub.0-inf between BAN2401 and the mutants are indicated in the table, where * denotes P < 0.05, **P < 0.01, ***P < 0.001 and ****P < 0.0001. Antibody AUC.sub.0-inf (mg* h/ml) Terminal half-life (days) BAN2401 3.6 3.5 A17D/R79T 38.0**** 10.7** A17D/R79T_DI 1 42.3**** 13.0*** A17D/R79T_DI 2 40.4**** 10.5** A17D/R79T_DI 3 44.9**** 12.6*** A17D/R79T_DI 4 43.7**** 12.7*** A17D/R79T_DI 5 32.6**** 10.4* A17D/R79T_DI 6 33.4**** 12.2*** A17D/R79T_DI 7 41.7**** 14.1**** A17D/R79T_DI 8 43.8**** 10.0*
Example 8
Pharmacokinetic Profile of Deimmunized Antibodies in Rat
(311) Pharmacokinetic Profiles of BAN2401, A17D/R79T and Eight Deimmunized Variants of A17D/R79T (A17D/R79T DI 1-8) in Rats
(312) In order to compare the PK profiles of the eight variants of deimmunized A17D/R79T (A17D/R79T_DI 1-8) to the PK profile of BAN2401 and A17D/R79T in rats, 8 weeks old female Sprague Dawley rats were grouped (N=5) and subjected to single i.v. injections of 10 mg/kg antibody. Animals were bled after 0.5 h, 2 days, 7 days, 14 days and 28 days and levels of BAN2401 and antibodies of the invention were analysed by ELISA using A1-40 for capture and HRP-coupled goat-anti-human IgG for detection (Example 1, direct ELISA).
(313) As shown in
(314) TABLE-US-00011 TABLE 7 Plasma PK parameters of BAN2401, A17D/R79T and deimmunized variants of A17D/R79T (A17D/R79T_DI 1-8) in rats. Half-life and AUC.sub.0-inf for all antibodies were calculated individually for all animals by non-compartmental analysis using Phoenix WinNonlin 6.3 (Pharsight) and subjected to statistical analysis by one-way ANOVA followed by Bonferroni's Multiple Comparison post-test. Mean AUCs and mean terminal half-lives are shown in the table. Statistical differences in terminal half-life and AUC between BAN2401 and antibodies of the invention are indicated in the table, where * denotes P < 0.05 and **P < 0.01. Antibody AUC.sub.0-inf (mg*h/ml) Terminal half-life (days) BAN2401 35.1 10.2 A17D/R79T 48.6** 11.0 A17D/R79T_DI 1 47.3** 13.3* A17D/R79T_DI 2 33.7 11.8 A17D/R79T_DI 3 43.1 11.7 A17D/R79T_DI 4 47.3** 11.7 A17D/R79T_DI 5 44.1 11.6 A17D/R79T_DI 6 39.6 11.3 A17D/R79T_DI 7 35.6 11.8 A17D/R79T_DI 8 40.9 10.6
Example 9
Pharmacokinetic Profile of Deimmunized Antibodies in Monkey
(315) Pharmacokinetic Profiles of BAN2401, A17D/R79T_DI 3, A17D/R79T_DI 4 and A17D/R79T_DI 8 in Cynomolgus Monkeys.
(316) In order to compare the PK profiles of A17D/R79T_DI 3, A17D/R79T_DI 4 and A17D/R79T_DI 8 to the PK profile of BAN2401 in monkeys, male cynomolgus monkeys were grouped (N=3) and subjected to single i.v. infusions of 5 mg/kg BAN2401 or 10 mg/kg of the antibodies of the invention. BAN2401 injected monkeys were bled after 5 min, 1 h, 2 h, 8 h, 24 h, 2 days, 4 days, 7 days, 14 days, 21 days and 28 days post administration, whereas the monkeys injected with the antibodies of the invention were bled after 5 min, 2 h, 8 h, 24 h, 3 days, 7 days, 14 days, 21 days and 28 days. Plasma concentration of the administered antibodies were analysed by ELISA as described in Example 1 (direct ELISA). The PK profiles are shown as time vs concentration graphs in
(317) TABLE-US-00012 TABLE 8 Plasma PK parameters of BAN2401, A17D/R79T_DI 3, A17D/R79T_DI 4 and A17D/R79T_DI 8 in cynomolgus monkeys. Terminal half-life and AUC.sub.0-inf for all antibodies were calculated by non-compartment analysis using Phoenix WinNonlin 6.3 (Pharsight). PK parameters from BAN2401 shown here is from a separate study in which BAN2401 was administered by i.v. infusion at a dose of 5 mg/kg BAN2401. To simplify AUC comparisons between BAN2401 and the antibodies of the invention dose adjusted mean AUC.sub.0-inf and mean terminal half-life values are shown in the table. Dose corrected AUC.sub.0-inf Antibody (mg*h/ml) per (mg/kg) Terminal half-life (days) BAN2401 5.3 12.0 A17D/R79T_DI 3 6.1 12.0 A17D/R79T_DI 4 6.5 12.6 A17D/R79T_DI 8 7.1 17.2
Example 10
Simple Allometric ScalingMouse, Rat and Monkey to Man
(318) In order to predict human half-life of the antibodies of the invention (here shown for A17D/R79T_DI 3, A17D/R79T_DI 4 and A17D/R79T_DI 8), 2-comparmental modeling and simple allometric scaling were performed. A 2-compartmental model was applied to plasma PK profiles of BAN2401 and the antibodies of the invention using Phoenix WinNonlin 6.3 (Pharsight), in order to estimate clearance (CL) and volume (V) values in mouse rat and monkey. CL and V values were plotted versus body weight and simple allometric scaling was applied (Deng et al. mAbs 2011: 3(1): p. 61-66. doi:10.4161/mabs.3.1.13799). Terminal half-life was calculated following the equation:
(319)
(320) In simple allometric scaling of volume or clearance, the values of the estimated parameters in preclinical species are plotted versus body weight. The constant and the exponent from the regression line are used to predict V and CL in man at a body weight of 70 kg. Both the exponent (which should preferably be around 0.85 for clearance and 1 for volume) and the adherence to the regression line are measures of confidence of the estimate of the specific parameters in man.
(321) As shown in
(322) The antibodies of the invention show a linear correlation of CL among species with a more confident allometric scaling, and they behave like other therapeutic IgG1s, such as bevacizumab, omalizumab and trastuzumab, as described in Deng et al, Expert Opin. Drug Metab. Toxicol 8(2) (2012): p. 141-160, with half-lives in man of about 15-30 days. In contrast to BAN2401, with a suboptimal PK profile in mouse and man deviating from many other therapeutic IgG1s, the antibodies of the present invention have been engineered resulting in normalized PK profiles in mouse. They show PK profiles and half-lives in mouse, rat and cynomolgus similar to other therapeutic IgG1s with half-lives in man of about 15-30 days. This finding would suggest that the prolonged half-life of the antibodies of the invention in mice will translate to man.