Automated specimen processing systems and methods
12332154 ยท 2025-06-17
Assignee
Inventors
- Timothy James Durrant (Camberwell, AU)
- Matthew Ketterer (Oro Valley, AZ, US)
- Michael Schurig (Tucson, AZ, US)
- Jorge Nicholas Quijada (Oro Valley, AZ, US)
- John Douglas Willems, JR. (Tucson, AZ, US)
Cpc classification
B01L9/52
PERFORMING OPERATIONS; TRANSPORTING
Y10T436/112499
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
International classification
Abstract
The disclosure presents systems and methods for processing a specimen slide using a specimen processing system. Specimen slides may sequentially be ejected from a slide carrier towards a label reader to determine an appropriate processing protocol for the slides. A cracking element may be engaged with the slide carrier prior to ejecting the slide, in order to break or crack any residual adhesive bond between edges of a slide and walls of the carrier. The specimen slides may be horizontally aligned and resting on a corresponding plurality of flat shelves, enabling even spacing via gravitational forces. The slides are therefore evenly spaced, enabling damage-free ejection of slides, and proper positioning for additional operations including scanning, viewing, heating, washing, and other processing. The label reader may process scanned information from the label of the slide to determine one or more attributes of the slide, and to generate an order or sequence of operations to be thereafter performed on the slide.
Claims
1. A method for processing a specimen, the method comprising: cracking an adhesive bond between a slide and a slide carrier with a cracking element by contacting the cracking element with at least one wall of the slide carrier with a force sufficient to crack the adhesive bond, wherein the cracking element has a cracking surface and is coupled to an actuator, and wherein the cracking element is movable by the actuator between a first position located adjacent to but not in contact with the at least one wall of the slide carrier and a second position in contact with the at least one wall of the slide carrier but not in contact with the slide; ejecting the slide from the slide carrier using a slide ejector, wherein the slide carrier comprises a plurality of evenly spaced flat shelves coupled to the at least one wall, wherein each evenly spaced flat shelf of the plurality of evenly spaced flat shelves is configured to support a slide in a substantially horizontal position relative to the ground, and wherein the slide is ejected with the slide ejector while in the substantially horizontal position; reading a label of the slide using a label reader; and utilizing a processor for determining one or more processes to be performed on the slide based on the label read by the label reader.
2. The method of claim 1, further comprising retrieving the one or more processes from a memory that is communicatively coupled to the processor.
3. The method of claim 1, wherein the one or more processes include one or more of pre-treatment of paraffin embedded samples, deparaffinizing, antigen retrieval, drying, washing, staining, immunohistochemistry protocols, in situ hybridization protocols, visualization, microscopy, imaging, or other analysis.
4. The method of claim 1, further comprising returning the slide to the slide carrier.
5. The method of claim 1, wherein the cracking element comprises a cracking surface.
6. The method of claim 1, wherein the slide ejector comprises an ejector element coupled to a drive mechanism for ejecting the slide from the slide carrier.
7. The method of claim 6, wherein the ejector element is movable between a first position and a second position, wherein in the first position an elongate portion of the ejector element is located proximal to a first end of a first slide supported within the slide carrier and in a second position the elongate portion of the ejector element is in contact with the first end of the first slide supported within the slide carrier.
8. The method of claim 1, wherein the label reader comprises one of an optical sensor or a barcode scanner.
9. The method of claim 1, wherein the label comprises one or more attributes, wherein the one or more attributes include at least one of an age of the one or more slides, a specimen type disposed on the slide, and stain information.
10. The method of claim 1, wherein the determining of the one or more processes to be performed are derived from one or more databases.
11. The method of claim 1, further comprising transporting the slide to a downstream processing unit.
12. The method of claim 1, wherein the label comprises a bar code.
13. The method of claim 1, wherein the adhesive bond is a wax bond.
14. A method for processing a specimen, the method comprising: cracking an adhesive bond between a slide and a slide carrier and/or between the slide and one or more adjacent slides within the slide carrier with a cracking element by contacting the cracking element with at least one wall of the slide carrier, wherein the cracking element has a cracking surface and is coupled to an actuator, and wherein the cracking element is movable by the actuator between a first position located adjacent to but not in contact with the at least one wall of the slide carrier and a second position in contact with the at least one wall of the slide carrier but not in contact with the slide; and ejecting the slide from the slide carrier using a slide ejector, wherein the slide carrier comprises at least one wall and a plurality of evenly spaced flat shelves coupled to the at least one wall, wherein each evenly spaced flat shelf of the plurality of evenly spaced flat shelves is configured to support the slide in a substantially horizontal position relative to the ground, and wherein the slide is ejected with the slide ejector while in the substantially horizontal position.
15. The method of claim 14, wherein the adhesive bond is a wax bond.
16. A method for processing a specimen, the method comprising: obtaining a slide carrier including at least one slide having an adhesive bond between the at least one slide and the slide carrier, wherein the slide carrier comprises at least one wall and a plurality of evenly spaced flat shelves coupled to the at least one wall, wherein each evenly spaced flat shelf of the plurality of evenly spaced flat shelves is configured to support the slide in a substantially horizontal position relative to the ground; contacting the slide carrier with a force sufficient to break the adhesive bond between the at least one slide and the slide carrier by contacting the at least one wall of the slide carrier with a crackling element, wherein the cracking element has a cracking surface and is coupled to an actuator; ejecting the at least one slide having the broken adhesive bond from the slide carrier using a slide ejector, wherein the at least one slide having the broken adhesive bond is ejected while the at least one slide having the broken adhesive bond is substantially in a horizontal position; reading a label of the slide using a label reader; and utilizing a processor for determining one or more processes to be performed on the slide based on the label read by the label reader.
17. The method of claim 16, wherein the adhesive bond is a wax bond.
18. The method of claim 16, wherein the force is at least 25 Newtons.
19. The method of claim 16, wherein two or more adhesive bonds are independently broken between two or more slides and the slide carrier.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION OF THE SUBJECT DISCLOSURE
(14) The exemplary embodiments described herein include systems and methods for processing a specimen slide using a specimen processing system, described below with reference to
(15) Generally, a specimen slide may be ejected from a slide carrier towards a staging device. The specimen slide may be one of a plurality of specimen slides carried by the slide carrier, and each specimen slide may be horizontally aligned and resting on a corresponding plurality of flat surfaces or slots, enabling optimal alignment via gravitational forces, as further described herein. The slides are therefore evenly spaced, enabling damage-free ejection of slides. The optimal alignment is used to properly position the slides for additional operations including scanning, viewing, heating, washing, and other processing. The slide may be ejected using a slide ejector that engages an ejector element or finger with the slide to push the slide onto a slide holding region of the staging device. For instance, the staging device may include a standby platform and an over-travel inhibitor, and a vacuum may be drawn through the over-travel inhibitor to stop forward movement of the slide on the slide holding region. A presence of the slide may be detected on the holding region by a controller via a plurality of sensors. For instance, the presence of the slide may be detected by changes in the vacuum suction of the over-travel inhibitor, changes in pressure within the vacuum port, fluid lines and/or vacuum sources, as well as other sensors including pressure sensors, light sensors, motion sensors, etc.
(16) Once ejected, an alignment of the slide may be further corrected from a misaligned position to an aligned position using, for instance, a plurality of aligning members that are coupled to a corresponding plurality of actuators adjacent the holding region. The aligning members may engage the slide to move the slide to an aligned position and, following alignment of the slide, the actuators can move the aligning members back to a starting position and away from the aligned slide. Once properly aligned, the slide may be transported to one or more processing stations. The slide may be transported from the standby platform to, for example, a specimen processing station while maintaining alignment of the slide. A transport assembly having a transfer head may be aligned with the standby platform via a plurality of head alignment features. The transfer head may be configured to engage, pick up and transport the slide using a capture feature such as, for instance, a vacuum provided by a vacuum source.
(17) For the following description, it can be assumed that most correspondingly labeled structures across the figures (e.g., 132 and 232, etc.) possess the same characteristics and are subject to the same structure and function. If there is a difference between correspondingly labeled elements that is not pointed out, and this difference results in a non-corresponding structure or function of an element for a particular embodiment, then that conflicting description given for that particular embodiment shall govern.
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(19) Moreover, a biological specimen can include one or more biological samples. Biological samples can be a tissue sample or samples (e.g., any collection of cells) removed from a subject. The tissue sample can be a collection of interconnected cells that perform a similar function within an organism. A biological sample can also be any solid or fluid sample obtained from, excreted by, or secreted by any living organism, including, without limitation, single-celled organisms, such as bacteria, yeast, protozoans, and amoebas, multicellular organisms (such as plants or animals, including samples from a healthy or apparently healthy human subject or a human patient affected by a condition or disease to be diagnosed or investigated, such as cancer). In some embodiments, a biological sample is mountable on a microscope slide and includes, without limitation, a section of tissue, an organ, a tumor section, a smear, a frozen section, a cytology prep, or cell lines. An incisional biopsy, a core biopsy, an excisional biopsy, a needle aspiration biopsy, a core needle biopsy, a stereotactic biopsy, an open biopsy, or a surgical biopsy can be used to obtain the sample.
(20) The protective housing 120 inhibits, limits, or substantially prevents contaminants from entering an internal processing environment. The protective housing 120 can include a cover 146 that can be opened to access internal components, including, without limitation, imaging devices (e.g., label scanners, barcode readers, cameras, etc.), robotic components (e.g., robotic arms), transport devices (e.g., conveyors, actuators, etc.), fluidic components, specimen processing stations, slide platens, mixing components (e.g., mixing wells, reagent trays, etc.), slide carrier handling components, opposable carrier handling components, dryers, pressurization devices (e.g., pumps, vacuum devices, etc.), or the like. The parking station 124 includes a row of bays. A slide carrier in the form of a basket is positioned in a left bay 148. Each bay can be configured to receive other types of slide carriers, such as racks, baskets, trays, or other types of carriers suitable for carrying slides before, during, or after specimen processing. The illustrated parking station 124 includes 12 bays separated by dividers. The number of bays, positions of bays, bay orientations, and bay configurations can be selected based on the types of slide carriers to be used.
(21) The loading station 130 includes a receiving opening 150 through which a user can load an opposable carrier. The opposable carrier can be a magazine that holds a stack of opposable elements. In other embodiments, the opposable carriers can be cartridges, or other portable structures for carrying opposables. The parking stations 140, 142 each include a row of bays. Each bay can hold one or more containers, including bulk reagent containers, bottles, bag-in-box reagent containers, or the like. The parking station 142 can hold bulk liquid containers that provide liquids used in larger volumes, such as wash solutions. Empty containers in the parking stations 140, 142 can be conveniently replaced with full containers. Fluid movement into, out of, and within specimen processing stations can be controlled by a fluidics module that includes, for example, pumps, valves, and filters. A pneumatics module can supply pressurized air and generate vacuums to perform various slide processing operations and to move fluids throughout the system 100. Waste can be delivered to a waste drawer 143. The waste drawer 143 holds waste containers 149A, 149B (see
(22) A controller 144 can command system components and can generally include, without limitation, one or more computers, central processing units, processing devices, microprocessors, digital signal processors (DSPs), application-specific integrated circuits (ASICs), readers, and the like. To store information, the controller 144 can include, without limitation, one or more storage elements, such as volatile memory, non-volatile memory, read-only memory (ROM), random access memory (RAM), or the like. The stored information can include heating programs, optimization programs, tissue preparation programs, calibration programs, indexing programs, mixing programs, or other executable programs.
(23) Moreover, as described herein, reading or scanning a label or barcode of each slide may trigger software-generated staining protocols and other operations according to predetermined sequences.
(24) For instance, optimization programs can be executed to optimize performance (e.g., enhance heating, reduce excess reagent consumption, increase productivity, enhance processing consistency, or the like) based on an identifier or attribute of the slides in the carrier. The processing may be optimized by determining, for example, an optimum schedule to (1) increase processing speeds, (2) reduce the time of heating or cooling cycles, (3) increase throughput (e.g., increase the number of slides processed in a certain length of time), and/or (4) reduce reagent waste. In some embodiments, the controller 144 determines loading sequences for loading the specimen processing stations to reduce processing times and to determine loading sequences of the dispensers. This saves time because fluids can be dispensed onto the next specimen-bearing slide as soon as a specimen-bearing slide is removed from the specimen processing station. In some embodiments, the controller 144 determines sequences for mixing and dispensing reagent using the mixing station 165.
(25) The controller can receive slide information from a reader (not shown) that obtains slide information (e.g., a target processing temperature, a target processing temperature range, replenishing rate, etc.) from a label of a slide. With the target processing temperature or target processing temperature range and a total evaporation rate, the controller 144 can determine a target range of equilibrium volumes. The controller 144 can receive additional information such as a total evaporation rate, look-up tables, temperature set points, duty cycles, power settings, environmental information such as ambient temperatures and/or humidity, processing protocols, etc. A processor on the controller or reader may be programmed to read a label or barcode of a slide and communicate with a data server or other similar device in order to retrieve information from a database based on the label. The memory can store different instructions for different processes, including contacting the specimen with a wash, applying a reagent (e.g., a stain) to the specimen, heating and cooling the slide to one or more target temperatures for different processes, etc. The controller may receive the information and execute a plurality of instructions stored in the memory that enable various components of the automated specimen processing system to perform operations that are optimized for the slide based on the label.
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(27) In operation, a user can load slide carriers carrying specimen-bearing slides into the empty bays of the parking station 124 of
(28) The specimen return mechanism 157 can load specimen-bearing slides into a slide carrier. The loaded slide carriers can be transported to the parking station 124. If the slide carriers are compatible with an automated coverslipper, the slide carriers may be transported from the parking station 124 to an automated coverslipper for coverslipping. Alternatively, the slides can be manually coverslipped. The coverslipped slides can be analyzed using optical equipment, e.g., a microscope or other optical devices. For instance, coverslipped slides may be ejected from the slide carrier to a label reader for a determination of how to process the slide, and subsequently guided back into the slide carrier for subsequent processing. Moreover, any adhesion caused by wax melting during heating of the slide, whether performed external to the system or within the system, may be broken by cracker elements prior to ejection of slides, as further described herein.
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(30) The carrier receiver 220 of
(31) Referring again to
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(33) Referring again to
(34) To protect the specimens, the lowermost slide in the slide carrier 170 can be ejected first. By starting with the lowermost slide, the specimen(s) on the vertically adjacent slide can be facing away from the head 360 and therefore protected. If the head 360 is vertically misaligned with the slide to be removed, the head 360 may strike the bottom of the vertically adjacent slide without dislodging the specimen(s) on the upper surface of the vertically adjacent slide. After removing the lowermost slide, the lowermost slide left in the slide carrier 170 can be removed. This process can be repeated until the slide carrier 170 is empty. Other indexing sequences can be used to remove or scan the slides.
(35) The empty slide carrier 170 can be returned to the loading position (
(36) In exemplary embodiments, the slide may be ejected onto a staging device coupled to a label reader or scanner. The label reader or scanner may process scanned information from a label of the slide. The scanned information may be used to confirm that the expected slide has been ejected, for instance, in the case where the label reader is a component of the slide/arc transfer module 160 in
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(39) In exemplary embodiments, a cracking element may be engaged with the slide carrier prior to ejecting the slide, in order to break or crack the residual adhesive bond between edges of a slide and walls of the carrier described in the Background. For instance, a cracking element that is significantly wider than the ejector element may be actuated towards the slide rack to breaks or crack bonds between one or more slides in the slide rack. The wide ejector element may be sufficiently sized to crack the adhesive bond of all the slides within a rack, or any number of slides within the rack. Then, a narrow ejector element may be engaged to eject a single slide among the plurality of cracked slides having their bonds broken.
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(41) Subsequent to the cracking operation,
(42) It generally takes a force of approximately 25 Newtons to break a single slide free of its wax bond. Although pushing multiple slides away from this adhesive bond ensures that the slides are evenly spaced and properly aligned due to gravity, this requires a large amount of force. For instance, breaking the bonds of 20 slides (i.e. an entire SAKURA rack) would be 500 Newtons, or approximately 112 lbs. of force. Such a force may be higher than desirable for the actuators and other components of the system. Therefore, cracking elements of different thicknesses or widths may be used to break these bonds prior to ejecting the slides. Moreover, different actuating mechanisms may be employed to crack the bond versus ejecting slides. For instance, in some exemplary embodiments, cracking element 346 may be coupled to a motor-driven actuator, while elongate member 340 may be coupled to a pneumatic actuator.
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(45) The foregoing disclosure of the exemplary embodiments of the present subject disclosure has been presented for purposes of illustration and description. It is not intended to be exhaustive or to limit the subject disclosure to the precise forms disclosed. Many variations and modifications of the embodiments described herein will be apparent to one of ordinary skill in the art in light of the above disclosure. The scope of the subject disclosure is to be defined only by the claims appended hereto, and by their equivalents.
(46) Further, in describing representative embodiments of the present subject disclosure, the specification may have presented the method and/or process of the present subject disclosure as a particular sequence of steps. However, to the extent that the method or process does not rely on the particular order of steps set forth herein, the method or process should not be limited to the particular sequence of steps described. As one of ordinary skill in the art would appreciate, other sequences of steps may be possible. Therefore, the particular order of the steps set forth in the specification should not be construed as limitations on the claims. In addition, the claims directed to the method and/or process of the present subject disclosure should not be limited to the performance of their steps in the order written, and one skilled in the art can readily appreciate that the sequences may be varied and still remain within the spirit and scope of the present subject disclosure.