MULTISPECIFIC ANTIGEN-BINDING MOLECULE WITH IMPROVED INTERNALIZATION CHARACTERISTICS
20230076417 · 2023-03-09
Inventors
- Bart De Goeij (Utrecht, NL)
- Joost MELIS (Utrecht, NL)
- Tom Vink (Utrecht, NL)
- Hendrik TEN NAPEL (Utrecht, NL)
- Esther Breij (Utrecht, NL)
- David Satijn (Utrecht, NL)
- Paul Parren (Utrecht, NL)
Cpc classification
C07K16/2842
CHEMISTRY; METALLURGY
C07K2317/66
CHEMISTRY; METALLURGY
A61K47/6851
HUMAN NECESSITIES
C07K2317/24
CHEMISTRY; METALLURGY
A61P43/00
HUMAN NECESSITIES
A61K47/6879
HUMAN NECESSITIES
A61K47/6803
HUMAN NECESSITIES
A61K47/6849
HUMAN NECESSITIES
C07K16/2896
CHEMISTRY; METALLURGY
C07K2317/92
CHEMISTRY; METALLURGY
International classification
A61P35/00
HUMAN NECESSITIES
A61K47/68
HUMAN NECESSITIES
Abstract
The present invention relates to a multispecific antigen-binding molecule comprising a first antigen-binding domain and a second antigen-binding domain. The first domain specifically binds a target molecule (T), and the second domain specifically binds an internalizing effector protein (E), the second antigen-binding domain having a dissociation constant (K.sub.D) with E of between 10.sup.−9 and 10.sup.−8 M. The multispecific antigen-binding molecule is useful in a method for treating and/or preventing a cancer.
Claims
1. A multispecific antigen-binding molecule comprising a first antigen-binding domain and a second antigen-binding domain, wherein the first antigen-binding domain specifically binds a target molecule (T) and the second antigen-binding domain specifically binds an internalizing effector protein (E), and wherein the second antigen-binding domain has a dissociation constant K.sub.D value with E of between 10.sup.−9 and 10.sup.−8 M.
2-6. (canceled)
7. The multispecific antigen-binding molecule according to claim 1, wherein E is a cell surface-expressed molecule that is internalized into the cell.
8. The multispecific antigen-binding molecule according to claim 7, wherein the multispecific antigen-binding molecule is internalized into the cell by way of binding to E only in the presence of the target molecule (T).
9. (canceled)
10. The multispecific antigen-binding molecule according to claim 1, which (a) upon binding to E internalizes more efficiently into cells expressing T as compared to cells not expressing T, (b) upon binding to T internalizes more efficiently into cells expressing E as compared to cells not expressing E, (c) upon binding to E is transported to the lysosomal compartment in cells expressing T, (d) upon binding to E is more efficiently transported to the lysosomal compartment in cells expressing T as compared to cells not expressing T, (e) upon binding to E is more efficiently transported to the lysosomal compartment in cells expressing T as compared to cells not expressing T, or (f) upon binding to T is more efficiently transported to the lysosomal compartment in cells expressing E as compared to cells not expressing E.
11-14. (canceled)
15. The multispecific antigen-binding molecule according to claim 1, wherein E is selected from the group consisting of CD63, MHC-I, Kremen-1, Kremen-2, LRP5, LRP6, transferrin receptor, LDLr, MAL, V-ATPase and ASGR.
16. (canceled)
17. The multispecific antigen-binding molecule according to claim 1, wherein E is a soluble ligand that is internalized into a cell via the interaction between E and an internalizing cell surface-expressed receptor molecule.
18. (canceled)
19. The multispecific antigen-binding molecule according to claim 1.
20. The multispecific antigen-binding molecule according to claim 1, wherein T is HER2.
21-28. (canceled)
29. The multispecific antigen-binding molecule according to claim 1, wherein said second antigen-binding domain has one or more mutations that modulates the affinity of the second antigen-binding domain with E, optionally wherein the mutation is a single histidine substitution.
30. (canceled)
31. (canceled)
32. The multispecific antigen-binding molecule according to claim 1, wherein said second antigen-binding domain comprises: (a) heavy chain variable region CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 3, and 4, respectively, and light chain variable region CDRs 1, 2, and 3 as provided in SEQ ID Nos: 9, 7, and 8, respectively, or (b) heavy chain variable region CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 10, and 4, respectively, and light chain variable region CDRs 1, 2, and 3 as provided in SEQ ID Nos: 6, 7, and 8, respectively, or (c) heavy chain variable region CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 11, and 4, respectively, and light chain variable region CDRs 1, 2, and 3 as provided in SEQ ID Nos: 6, 7, and 8, respectively, or (d) heavy chain variable region CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 12, and 4, respectively, and light chain variable region CDRs 1, 2, and 3 as provided in SEQ ID Nos: 6, 7, and 8, respectively.
33. (canceled)
34. (canceled)
35. The multispecific antigen-binding molecule according to claim 1, wherein the antigen-binding molecule is a tumor-associated target (T)xCD63 bispecific antibody.
36. The multispecific antigen-binding molecule according to claim 35, wherein the antigen-binding molecule is a HER2xCD63 bispecific antibody.
37. The multispecific antigen-binding molecule according to claim 1, wherein the antigen-binding molecule has an EC.sub.50 value for binding to tumor-associated target (T)-expressing cells, such as HER2 expressing cells, of lower than 5.0 μg/ml, as determined by flow cytometry.
38. (canceled)
39. The multispecific antigen-binding molecule according to claim 1, wherein the antigen-binding molecule is a bispecific antibody comprising: i) a first binding arm comprising a first heavy chain comprising a first heavy chain constant sequence (CH), said first CH comprising a first CH3 region, wherein said first CH3 region has at least one of the amino acids in a position corresponding to positions T366, L368, K370, D399, F405, Y407 or K409 of human IgG1 heavy chain substituted, and ii) a second binding arm comprising a second heavy chain comprising a second heavy chain constant sequence (CH), said second CH comprising a second CH3 region, wherein said second CH3 region has at least one of the amino acids in a position corresponding to positions T366, L368, K370, D399, F405, Y407 or K409 of human IgG1 heavy chain substituted, wherein the sequences of said first and second CH3 regions are different and are such that a heterodimeric interaction between said first and second binding arm is stronger than a homodimeric interaction of each of said first and second binding arms, and wherein said first and said second CH3 regions are not substituted in the same positions and wherein the amino acid positions are numbered according the EU-index.
40. (canceled)
41. The multispecific antigen-binding molecule according to claim 39, wherein (i) the first CH3 region has an F405L substitution and the second CH3 region has a K409R substitution, or (ii) the first CH3 region has a K409R substitution and the second CH3 region has an F405L substitution.
42. The multispecific antigen-binding molecule according to claim 1, wherein the multispecific antigen-binding molecule is conjugated to a cytotoxic moiety, a radioisotope or a drug.
43. The multispecific antigen-binding molecule according to claim 42, wherein the cytotoxic moiety is selected from the group consisting of maytansine, calicheamicin, duocarmycin, duostatin, duostatin-3, duostatin-5, rachelmycin (CC-1065), auristatin, monomethyl auristatin E, monomethyl auristatin F, doxorubicin, dolastatin, pyrrolobenzodiazepine, IGN-based toxins, alpha-amanitin, or an analog, derivative, or prodrug of any thereof.
44. The multispecific antigen-binding molecule according to claim 1, wherein binding of T and E by the multispecific antigen-binding molecule induces internalization of the multispecific antigen-binding molecule to a greater extent than the binding of T alone.
45. A bispecific antigen-binding fragment of the multispecific antigen-binding molecule according to claim 1, wherein the antigen-binding fragment is a tandem scFv, tandem scFv-Fc, scFv-Fc knobs-into-holes, scFv-Fc-scFv, F(ab′).sub.2, Fab-scFv, (Fab′ scFv).sub.2, Diabody, scDiabody, scDiabody-Fc, scDiabody-C.sub.H3, or azymetric scaffold.
46. A method of treating cancer comprising administering to a subject in need thereof an effective amount of the multispecific antigen-binding molecule according to claim 1.
47. The method according to claim 46, wherein the cancer is endometrial/cervical cancer, lung cancer, malignant melanoma, ovarian cancer, pancreatic cancer, prostate cancer, testis cancer, a soft-tissue tumor such as synovial sarcoma, breast cancer, brain tumor, leukemia, lymphoma, mastocytoma, renal cancer, uterine cervix cancer, bladder cancer, esophageal cancer, gastric cancer, or colorectal cancer.
48. A method of targeting a tumor, the method comprising administering to a subject with a tumor the multispecific antigen-binding molecule according to claim 1.
49. A pharmaceutical composition comprising the multispecific antigen-binding molecule according to claim 1.
50. (canceled)
51. A nucleic acid encoding the multispecific antigen-binding molecule according to claim 1, an expression vector comprising the nucleic acid, or a host cell comprising the nucleic acid or expression vector.
52. (canceled)
53. (canceled)
Description
DESCRIPTION OF THE FIGURES
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DETAILED DESCRIPTION OF THE INVENTION
[0061] In one aspect, the present invention relates to a multispecific antigen-binding molecule comprising a first antigen-binding domain and a second antigen-binding domain, wherein the first domain specifically binds a target molecule (T), and wherein the second domain specifically binds an internalizing effector protein (E), and wherein the second antigen-binding domain has a dissociation constant K.sub.D value with E of between 10.sup.−9 and 10.sup.−8 M.
[0062] To provide tumor specificity of the multispecific antigen-binding molecule of the present invention, in absence of the first antigen-binding domain, the second domain which specifically binds to the internalizing effector protein (E), may advantageously not bind or only bind with low affinity and subsequently not internalize or at least internalize to a significant lesser degree. It has been found by the present inventors that a multispecific antigen-binding molecule wherein the second antigen-binding domain has a dissociation constant K.sub.D value with E of between 10.sup.−9 and 10.sup.−8 M fulfills these criteria.
[0063] The target molecule (T), preferably a tumor-associated target molecule, may be a protein, polypeptide, lipid or other macromolecule. In a preferred embodiment, the target molecule is a protein. In another embodiment, the target molecule, preferably a tumor-associated target molecule is a polypeptide. In some embodiments, T is a cell surface-expressed target protein or target polypeptide. In other embodiments, T is a soluble target protein or target polypeptide, preferably one that interacts with a cell surface receptor. Target binding by the multispecific antigen-binding molecule may take place extracellularly or on the cell surface.
[0064] In one embodiment, the target molecule is a cell surface-expressed receptor. In a preferred embodiment, the target molecule is a tyrosine kinase receptor, preferably a transmembrane tyrosine kinase receptor. In another embodiment, the target molecule is a membrane-bound ligand.
[0065] In other embodiments, the multispecific antigen-binding molecule, preferably bispecific antigen-binding molecule, binds E on the cell surface or inside the cell.
[0066] It is particularly preferred that the target molecule is a tumor-associated antigen, such as a tumor-associated protein or polypeptide. Advantageously, the tumor-associated antigen is an antigen that is not ordinarily internalized or is poorly internalized. Preferably, the tumor-associated antigen is an antigen that shows inefficient routing to the lysosomal compartment.
[0067] The internalizing effector protein (E) may be tumor-associated or tumor-specific. In other embodiments, the internalizing effector protein (E) may be expressed on or in tumor as well as non-tumor cells.
[0068] The internalizing effector protein (E) is a protein that is capable of being internalized into a cell or that otherwise participates in or contributes to internalization. In some embodiments, the internalizing effector protein is a protein that undergoes transcytosis; i.e. the protein is internalized on one side of a cell and transported to the other side of the cell. Preferably, the internalizing effector protein is a membrane protein or a soluble extracellular protein that binds a membrane-bound receptor. In a preferred embodiment, the internalizing effector protein is a protein that shows efficient routing to the lysosomal compartment of the cell.
[0069] Binding of the second domain to the internalizing effector protein advantageously results in internalization of the multispecific antigen-binding molecule and the target molecule associated therewith into the cell. In a preferred embodiment, the internalizing effector protein is a membrane-associated protein with at least one extracellular domain or region, the protein being internalized, and preferably processed via an intracellular degradative and/or recycling pathway. Specific examples of internalizing effector proteins that are directly internalized into a cell include, e.g., CD63, MHC-I (e.g., HLA-B27), Kremen-1 , Kremen-2, LRP5, LRP6, LRP8, transferrin receptor, LDL-receptor, LDL-related protein 1 receptor, ASGR1 , ASGR2, amyloid precursor protein-like protein-2 (APLP2), apelin receptor (APLNR), MAL (Myelin And Lymphocyte protein, VIP17), IGF2R, vacuolar-type H+ ATPase, diphtheria toxin receptor, folate receptor, glutamate receptors, glutathione receptor, leptin receptors, scavenger receptors (e.g., SCARA1-5, SCARB1-3, CD36). In a preferred embodiment, the internalizing effector protein E is a cell surface internalizing receptor. In a preferred embodiment, the internalizing effector protein E is CD63.
[0070] In a preferred embodiment, the multispecific antigen-binding molecule comprises i) a first binding arm which comprises the first antigen-binding domain and ii) a second binding arm which comprises the second antigen-binding domain.
[0071] It is particularly preferred that the multispecific antigen-binding molecule is a bispecific antigen-binding molecule.
[0072] In one embodiment of the present invention, the second antigen-binding domain has a dissociation constant K.sub.D value with E higher than 10.sup.−9 and lower than 10.sup.−8 M. According to another embodiment, the second antigen-binding domain has a dissociation constant K.sub.D with E of between 2.0×10.sup.−9 and 9.0×10.sup.−9 M. According to another embodiment, the second antigen-binding domain has a dissociation constant K.sub.D with E of between 2.0×10.sup.−9 and 7.3×10.sup.−9 M.
[0073] According to another embodiment, E is a cell surface-expressed molecule that is internalized, preferably directly internalized, into the cell. Preferably, the multispecific antigen-binding molecule is internalized into the cell by way of binding to E only in the presence of the target molecule (T). It is also preferred that the multispecific antigen-binding molecule is internalized into the cell by way of binding to E only when the first domain is specifically bound to the target molecule (T).
[0074] In one embodiment, the multispecific antigen-binding molecule, upon binding to E, internalizes more efficiently into cells expressing T as compared to cells not expressing T.
[0075] In another embodiment, the multispecific antigen-binding molecule, upon binding to T, internalizes more efficiently into cells expressing E as compared to cells not expressing E.
[0076] In another embodiment, the multispecific antigen-binding molecule, upon binding to E, is transported to the lysosomal compartment in cells expressing T.
[0077] In another embodiment, the multispecific antigen-binding molecule, upon binding to E, is more efficiently transported to the lysosomal compartment in cells expressing T as compared to cells not expressing T.
[0078] In another embodiment, the multispecific antigen-binding molecule, upon binding to T, is more efficiently transported to the lysosomal compartment in cells expressing E as compared to cells not expressing E.
[0079] According to another embodiment, E is selected from the group consisting of CD63, MHC-I, Kremen-1, Kremen-2, LRP5, LRP6, transferrin receptor, LDLr, MAL, V-ATPase and ASGR. In a preferred embodiment, E is CD63.
[0080] According to another embodiment, E is a soluble ligand that is internalized into a cell via the interaction between E and an internalizing cell surface-expressed receptor molecule.
[0081] According to another embodiment, T is a cell surface-expressed target molecule. In a particularly preferred embodiment, T is a tumor-associated antigen. The internalization-enhancing strategy of the present invention may thus involve combining a tumor-associated target antigen with the internalizing capacities of an antigen such as CD63. In particular, bispecific antibodies that bind to both CD63 and a tumor-associated target may be useful in therapeutic settings in which specific targeting and enhanced internalization of an antibody-drug-conjugate is desired. According to one embodiment, T is HER2.
[0082] According to another embodiment, the first and/or the second antigen-binding domain comprises at least one antibody variable region, preferably at least two antibody variable regions.
[0083] According to some embodiments, the multispecific antigen-binding molecule is a multispecific antibody, preferably a bispecific antibody, or a multispecific, preferably bispecific, antibody fragment or recombinantly engineered part thereof. In a particularly preferred embodiment, the multispecific antigen-binding molecule is a bispecific antibody. A bispecific antibody may be employed to use internalization enhancing properties of one antigen by binding to the same with one arm, and bind a target molecule, such as a tumor-associated target molecule, with the other arm of the bispecific antibody. Such a bispecific antibody may then be loaded with a cytotoxic conjugate to induce cell death upon internalization of the ADC.
[0084] In one embodiment, the antibody is a bispecific antibody, comprising (i) a first antibody comprising a first antigen-binding domain specifically binding a target molecule (T) as defined herein, and (ii) a second antibody comprising a second antigen-binding domain specifically binding an internalizing effector protein (E) as defined herein.
[0085] In a preferred embodiment, the multispecific antigen-binding molecule is a bispecific antibody comprising a first binding arm comprising the first antigen-binding domain and a second binding arm comprising said second antigen-binding domain. Advantageously, said first antigen-binding domain comprises a first heavy chain variable sequence (VH) and a first light chain variable sequence (VL), and said second antigen-binding domain comprises a second heavy chain variable sequence (VH) and a second light chain variable sequence (VL) and wherein said variable sequences each comprises three CDR sequences, CDR1, CDR2 and CDR3.
[0086] In a preferred embodiment, (i) said first binding arm comprises a first heavy chain comprising a first heavy chain variable sequence (VH) and a first heavy chain constant sequence (CH), and a first light chain comprising a first light chain variable sequence (VL) and a first light chain constant sequence (CL), and (ii) said second binding arm comprises a second heavy chain comprising a second heavy chain variable sequence (VH) and a second heavy chain constant sequence (CH), and a second light chain comprising a second light chain variable sequence (VL) and a second light chain constant sequence (CL).
[0087] According to another embodiment, the first binding arm is derived from a chimeric antibody or from a humanized antibody or from a human antibody. According to another embodiment, the second binding arm is derived from a chimeric antibody or from a humanized antibody or from a human antibody. Accordingly, in one embodiment the first binding arm is derived from a human antibody and the second binding arm is derived from a humanized antibody or from a chimeric antibody.
[0088] It is preferred that the multispecific antigen-binding molecule of the present invention is a bispecific antibody, wherein the bispecific antibody is a full-length antibody, preferably an IgG1 antibody.
[0089] In a preferred embodiment, the multispecific antigen-binding molecule of the invention is isolated. An “isolated multispecific antigen-binding molecule” as used herein, is intended to refer to a multispecific antigen-binding molecule, such as a bispecific antibody, which is substantially free of other antigen-binding molecules or antibodies having different antigenic specificities. Moreover, an isolated multispecific antigen-binding molecule may be substantially free of other cellular material and/or chemicals.
[0090] According to another embodiment, said second antigen-binding domain has one or more mutations that modulate the affinity of the second antigen-binding domain with E. In another embodiment, said second antigen-binding domain is derived from an antibody having one or more mutations in the VH and/or VL that modulates the affinity of the second antigen-binding domain with E. It is preferred that the affinity is modulated such that the second antigen-binding domain has a dissociation constant K.sub.D value with E of between 10.sup.−9 and 10.sup.−8 M.
[0091] According to another embodiment, said antibody has one or more mutations in the anti-CD63 Fab region that modulates the affinity of the second antigen-binding domain with E, where E is CD63. According to another embodiment, the mutation is a single amino acid substitution, preferably a single amino acid histidine substitution.
[0092] According to another embodiment, said one or more mutations in the VH and/or VL is an amino acid substitution, preferably a histidine substitution, at position 54 of the VL according to SEQ ID No. 5 of Table 1 below, or at positions 71, 72 and/or 74 of the VH according to SEQ ID No. 1 of Table 1 below. For example, anti-CD63-N74H has an asparagine to histidine mutation at position 74 of the heavy chain according to SEQ ID No. 1, anti-CD63-LN54H has an asparagine to histidine mutation at position 54 of the light chain according to SEQ ID No. 5. According to another embodiment, the second antigen-binding domain is selected such that it binds target E with a K.sub.D within the preferred affinity range.
[0093] In a preferred embodiment, said amino acid substitution, preferably a histidine substitution is at position 74 of the VH according to SEQ ID No. 1. In a preferred embodiment, the mutation is N74H of the VH according to SEQ ID No. 1.
[0094] In a preferred embodiment said second domain, preferably as part of said second binding arm, comprises: [0095] a) VH CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 3, and 4, respectively, and VL CDRs 1, 2, and 3 as provided in SEQ ID Nos: 9, 7, and 8, respectively, or [0096] b) VH CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 10, and 4, respectively, and VL CDRs 1, 2, and 3 as provided in SEQ ID Nos: 6, 7, and 8, respectively, or [0097] c) VH CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 11, and 4, respectively, and VL CDRs 1, 2, and 3 as provided in SEQ ID Nos: 6, 7, and 8, respectively, or [0098] d) VH CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 12, and 4, respectively, and VL CDRs 1, 2, and 3 as provided in SEQ ID Nos: 6, 7, and 8, respectively.
[0099] In a particularly preferred embodiment, said second domain, preferably as part of said second binding domain, comprises VH CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 12, and 4, respectively, and VL CDRs 1, 2, and 3 as provided in SEQ ID Nos: 6, 7, and 8, respectively.
[0100] According to another embodiment, said multispecific antigen-binding molecule comprises a mutated Fab region of a CD63-specific monoclonal antibody. According to another embodiment, said multispecific antigen-binding molecule comprises a mutated Fab region of CD63-specific monoclonal Ab 2192. According to another embodiment, said multispecific antigen-binding molecule comprises an antigen-binding region specific for CD63 selected from a hybridoma or phage-display library.
[0101] According to another embodiment, said first and second antigen-binding domains are each a pair of an antibody heavy chain variable domain and an antibody light chain variable domain.
[0102] The bispecific antigen-binding molecule may preferably further comprise antibody constant regions.
[0103] According to another embodiment, the antigen-binding molecule is a tumor-associated target (T)xCD63 bispecific antibody. In a preferred embodiment, the (T)xCD63 bispecific antibody is conjugated to a cytotoxic drug. In one embodiment the (T)xCD63 bispecific antibody is conjugated to duostatin-3. In one embodiment the (T)xCD63 bispecific antibody is conjugated to duostatin-3 and the anti-CD63 binding domain, which is the second binding domain, comprises VH CDRs 1, 2, and 3 as provided in SEQ ID Nos: 2, 12, and 4, respectively, and VL CDRs 1, 2, and 3 as provided in SEQ ID Nos: 6, 7, and 8, respectively. In particular, tumor-associated target (T)xCD63 bispecific antibody-drug conjugates (ADC) are useful in therapeutic settings in which specific targeting and enhanced internalization of the antibody-drug-conjugate is desired. It has been found by the inventors that the (T)xCD63 bispecific ADCs of the present invention are more efficient in killing cells expressing target T when compared to targeting only the tumor-associated antigen using a monospecific ADC. Such ADCs are found to be more potent in eradicating tumor cells in vitro and in animal models than prior art bispecific ADCs.
[0104] The (T)xCD63 bispecific ADCs of the present invention are found to be advantageous by enhancing the internalization of the ADC by being able to bind both the tumor-associated target and the potent internalizing characteristics of the CD63 antigen, thereby inducing stronger killing of cells by more efficient payload delivery inside the targeted cells. To tailor to the need of increasing efficacy of antibodies targeting various tumor-antigens, a narrow range of surprisingly efficient CD63 affinity variants (spanning a range of CD63 affinities) was found to enhance efficacy of the bispecific ADCs.
[0105] According to another embodiment, the antigen-binding molecule is a HER2xCD63 bispecific antibody.
[0106] According to another embodiment, the antigen-binding molecule has an EC.sub.50 value for binding to tumor-associated target (T)-expressing cells, such as HER2-expressing cells, of lower than 5.0 μg/ml, such as lower than 4.0 μg/ml, such as lower than 3.0 μg/ml, such as lower than 2.0 μg/ml, such as lower than 1.0 μg/ml, such as lower than 0.9 μg/ml, such as lower than 0.8 μg/ml, such as lower than 0.7 μg/ml, such as lower than 0.6 μg/ml, such as lower than 0.5 μg/ml, such as lower than 0.4 μg/ml, such as lower than 0.3 μg/ml, such as lower than 0.2 μg/ml, such as lower than 0.1 μg/ml, such as lower than 0.05 μg/ml, such as lower than 0.01 μg/ml, as determined by flow cytometry.
[0107] In another preferred embodiment, the binding of T and E by the multispecific antigen-binding molecule induces internalization of the multispecific antigen-binding molecule to a greater extent than the binding of T by the first domain alone. Similarly, the binding of T and E by the multispecific drug-conjugated antibodies of the present invention preferably induces cytotoxicity to a greater extent than the binding of T by the first domain alone.
[0108] In another preferred embodiment, the binding of T and E by the multispecific, preferably bispecific, antigen-binding molecule induces internalization of the multispecific antigen-binding molecule to a greater extent than the corresponding bivalent monospecific antibody binding T. Similarly, the binding of T and E by the multispecific, preferably bispecific, drug-conjugated antibodies of the present invention preferably induces cytotoxicity to a greater extent than the than the corresponding bivalent monospecific ADC binding T.
[0109] According to another embodiment, the K.sub.D value is determined by biolayer interferometry at 30° C. In another embodiment, K.sub.D is determined by biolayer interferometry at 30° C. and a pH of between 7.2 and 7.5, such as between 7.3 and 7.4, such as pH 7.4. In another embodiment, K.sub.D is determined by biolayer interferometry at 30° C. at 1000 RPM shaker speed. In another embodiment, K.sub.D is determined by biolayer interferometry using an Octet system, such as Octet HTX (ForteBio).
[0110] In a preferred embodiment, the antigen-binding molecule is a bispecific antibody comprising: [0111] i) a first binding arm comprising a first heavy chain comprising a first heavy chain constant sequence (CH), said first CH comprising a first CH3 region, and [0112] ii) a second binding arm comprising a second heavy chain comprising a second heavy chain constant sequence (CH), said second CH comprising a second CH3 region, [0113] wherein the sequences of said first and second CH3 regions are different and are such that a heterodimeric interaction between said first and second binding arm is stronger than a homodimeric interaction of each of said first and second binding arms.
[0114] Preferably, in said first heavy chain CH3 region at least one of the amino acids in a position corresponding to positions T366, L368, K370, D399, F405, Y407 or K409 of human IgG1 heavy chain has been substituted, and in said second heavy chain CH3 region at least one of the amino acids in a position corresponding to positions T366, L368, K370, D399, F405, Y407 or K409 of human IgG1 heavy chain has been substituted, wherein said first and said second heavy chains are not substituted in the same positions and wherein the amino acid positions are numbered according the EU-index.
[0115] In another embodiment, (i) the first CH3 region has an F405L substitution and the second CH3 region has a K409R substitution, or (ii) the first CH3 region has a K409R substitution and the second CH3 region has an F405L substitution.
[0116] According to another embodiment, the multispecific antigen-binding molecule is conjugated to a cytotoxic moiety, a radioisotope, a drug, a cytokine or an RNA silencing vehicle. Preferably, the multispecific antigen-binding molecule is conjugated to a cytotoxic moiety, a radioisotope, or a drug. Preferably, the multispecific antigen-binding molecule is conjugated to a cytotoxic moiety.
[0117] The cytotoxic moiety may be selected from the group consisting of duostatin-3, duostatin-5, pyrrolobenzodiazepine or an analog or derivative thereof, IGN-based toxins or an analog or derivative thereof, alpha-amanitin or an analog or derivative thereof, dolastatin or an analog or derivative thereof, taxol; cytochalasin B; gramicidin D; ethidium bromide; emetine; mitomycin; etoposide; tenoposide; vincristine; vinblastine; colchicin; doxorubicin; daunorubicin; dihydroxy anthracin dione; a tubulin-inhibitor such as maytansine or an analog or derivative thereof; mitoxantrone; mithramycin; actinomycin D; 1-dehydrotestosterone; a glucocorticoid; procaine; tetracaine; lidocaine; propranolol ; puromycin; calicheamicin or an analog or derivative thereof an antimetabolite such as methotrexate, 6 mercaptopurine, 6 thioguanine, cytarabine, fludarabin, 5 fluorouracil, decarbazine, hydroxyurea, asparaginase, gemcitabine, or cladribine; an alkylating agent such as mechlorethamine, thioepa, chlorambucil, melphalan, carmustine (BSNU), lomustine (CCNU), cyclophosphamide, busulfan, dibromomannitol, streptozotocin, dacarbazine (DTIC), procarbazine, mitomycin C, cisplatin, carboplatin, duocarmycin A, duocarmycin SA, rachelmycin (CC-1065), or an analog or derivative thereof; an antibiotic such as dactinomycin, bleomycin, daunorubicin, doxorubicin, idarubicin, mithramycin, mitomycin, mitoxantrone, plicamycin, anthramycin (AMC)) ; an antimitotic agent such as an auristatin or an analog or derivative thereof, monomethyl auristatin E or F or an analog or derivative thereof; diphtheria toxin and related molecules such as diphtheria A chain and active fragments thereof and hybrid molecules, ricin toxin such as ricin A or a deglycosylated ricin A chain toxin, cholera toxin, a Shiga-like toxin such as SLT I, SLT II, SLT IIV, LT toxin, C3 toxin, Shiga toxin, pertussis toxin, tetanus toxin, soybean Bowman-Birk protease inhibitor, Pseudomonas exotoxin, alorin, saporin, modeccin, gelanin, abrin A chain, modeccin A chain, alpha-sarcin, Aleurites fordii proteins, dianthin proteins, Phytolacca americana proteins such as PAPI, PAPII, and PAP S, momordica charantia inhibitor, curcin, crotin, sapaonaria officinalis inhibitor, gelonin, mitogellin, restrictocin, phenomycin, and enomycin toxins; ribonuclease (RNase); DNase I, Staphylococcal enterotoxin A; pokeweed antiviral protein; diphtherin toxin, Pseudomonas endotoxin and RNAi (i.e., siRNA, shRNA conjugated to an antibody or delivered in a nanoparticle).
[0118] According to another embodiment, the cytotoxic moiety is selected from the group consisting of maytansine, calicheamicin, duocarmycin, duostatin, duostatin-3, duostatin-5, rachelmycin (CC-1065), auristatin, monomethyl auristatin E, monomethyl auristatin F, doxorubicin, dolastatin, pyrrolobenzodiazepine, IGN-based toxins, alpha-amanitin, or an analog, derivative, or prodrug of any thereof.
[0119] In one embodiment, the cytotoxic moiety, drug or radioisotope is linked to said antibody, or fragment thereof, with a cleavable linker, such as N-succinimydyl 4-(2-pyridyldithio)-pentanoate (SSP), maleimidocaproyl-valine-citrulline-p-aminobenzyloxycarbonyl (mc-vc-PAB) or AV-1 K-lock valine-citrulline.
[0120] The term “cleavable linker” as used herein, refers to a subset of linkers that are catalyzed by specific proteases in the targeted cell or in the tumor microenvironment, resulting in release of the cytotoxic agent. Examples of cleavable linkers are linkers based on chemical motifs including disulfides, hydrazones or peptides. Another subset of cleavable linker, adds an extra linker motif between the cytotoxic agent and the primary linker, i.e. the site that attaches the linker-drug combination to the antibody. In some embodiments, the extra linker motif is cleavable by a cleavable agent that is present in the intracellular environment (e.g. within a lysosome or endosome or caveola). The linker can be, e.g. a peptidyl linker that is cleaved by an intracellular peptidase or protease enzyme, including but not limited to, a lysosomal or endosomal protease. In some embodiments, the peptidyl linker is at least two amino acids long or at least three amino acids long. Cleaving agents can include cathepsins B and D and plasmin, all of which are known to hydrolyze dipeptide drug derivatives resulting in the release of active drug inside the target cells (see e.g. Dubowchik and Walker, 1999, Pharm. Therapeutics 83:67-123). In a specific embodiment, the peptidyl linker cleavable by an intracellular protease is a Val-Cit (valine-citrulline) linker or a Phe-Lys (phenylalanine-lysine) linker (see e.g. U.S. Pat. No. 6,214,345, which describes the synthesis of doxorubicin with the Val-Cit linker). An advantage of using intracellular proteolytic release of the therapeutic agent is that the agent is typically attenuated when conjugated and the serum stabilities of the conjugates are typically high.
[0121] In another embodiment, the cytotoxic agent, drug or radioisotope is linked to said antibody, or fragment thereof, with a non-cleavable linker, such as succinimidyl-4(N-maleimidomethyl)cyclohexane-1-carboxylate (MCC) or maleimidocaproyl (MC).
[0122] The term “noncleavable linker” as used herein, refers to a subset of linkers which, in contrast to cleavable linkers, do not comprise motifs that are specifically and predictably recognized by intracellular or extracellular proteases. Thus, ADCs based on non-cleavable linkers are not released or cleaved form the antibody until the complete antibody-linker-drug complex is degraded in the lysosomal compartment. Examples of a non-cleavable linker are thioethers. In yet another embodiment, the linker unit is not cleavable and the drug is released by antibody degradation.
[0123] In a particularly preferred embodiment, the binding of T and E by the multispecific antigen-binding molecule induces internalization of the multispecific antigen-binding molecule to a greater extent than the binding to target T alone.
[0124] In another aspect, the present invention relates to multispecific antibodies generated by using technologies or formats such as but not limited to: DuoBody, CrossMab, Triomab, kih IgG common LC, DVD-Ig, 2 in 1-IgG, IgG-scFv, bi-Nanobody, BiTE, TandAbs, DART, DART-Fc, scFv-HSA-scFv, orthoFab-IgG, tetravalent Tv-IgGs, dock-and-lock (DNL) formats such as DNL-Fab3, or fragments such as tandem scFv, tandem scFv-Fc, knob-into-hole IgGs, scFv-Fc knobs-into-holes, scFv-Fc-scFv, F(ab′)2, Fab-scFv, (Fab′scFv)2, Diabody, scDiabody, scDiabody-Fc, scDiabody-CH3, or Azymetric scaffold.
[0125] In another aspect, the present invention relates to a bispecific antibody fragment of the multispecific antigen-binding molecule, wherein the antibody fragment is a tandem scFv, tandem scFv-Fc, scFv-Fc knobs-into-holes, scFv-Fc-scFv, F(ab′).sub.2, Fab-scFv, (Fab′scFv).sub.2, Diabody, scDiabody, scDiabody-Fc, scDiabody-C.sub.H3.
[0126] In another aspect, the present invention relates to the multispecific antigen-binding molecule or the bispecific antibody fragment for use in a method for treating and/or preventing a cancer. The subject treated in such method is preferably a human individual in need of such treatment, such as a cancer patient. In one embodiment, the cancer is breast cancer, including primary, metastatic, and refractory breast cancer.
[0127] In some embodiments, the cancer is endometrial/cervical cancer, lung cancer, malignant melanoma, ovarian cancer, pancreatic cancer, prostate cancer, testis cancer, a soft-tissue tumor such as synovial sarcoma, breast cancer, brain tumor, leukemia, lymphoma, mastocytoma, renal cancer, uterine cervix cancer, bladder cancer, esophageal cancer, gastric cancer, or colorectal cancer.
[0128] The effective dosages and the dosage regimens for the multispecific antigen-binding molecule depend on the cancer to be treated. An exemplary, non-limiting range for a therapeutically effective amount of a bispecific antibody of the present invention is about 0.1-100 mg/kg, such as about 0.1-50 mg/kg, for example about 0.1-20 mg/kg, such as about 0.1-10 mg/kg, for instance about 0.5, about such as 0.3, about 1, about 3, about 5, or about 8 mg/kg.
[0129] In some embodiments, the multispecific antigen-binding molecule may be administered prophylactically in order to reduce the risk of developing cancer, delay the onset of the occurrence of an event in cancer progression, or in an adjuvant setting, and/or to reduce the risk of recurrence when a cancer is in remission.
[0130] In one embodiment, the method for treating or preventing a cancer comprises administration of a therapeutically effective amount of the multispecific antigen-binding molecule of the present invention and at least one additional therapeutic agent to a subject in need thereof. In some embodiments, such an additional therapeutic agent may be selected from an antimetabolite, such as methotrexate, 6-mercaptopurine, 6-thioguanine, cytarabine, fludarabine, 5-fluorouracil, decarbazine, hydroxyurea, asparaginase, gemcitabine or cladribine. In other embodiments, such an additional therapeutic agent may be selected from an alkylating agent, such as mechlorethamine, thioepa, chlorambucil, melphalan, carmustine (BSNU), lomustine (CCNU), cyclophosphamide, busulfan, dibromomannitol, streptozotocin, dacarbazine (DTIC), procarbazine, mitomycin C, cisplatin and other platinum derivatives, such as carboplatin. In other embodiments, such an additional therapeutic agent may be selected from an anti-mitotic agent, such as taxanes, for instance docetaxel, and paclitaxel, and vinca alkaloids, for instance vindesine, vincristine, vinblastine, and vinorelbine. In other embodiments, such an additional therapeutic agent may be selected from a topoisomerase inhibitor, such as topotecan or irinotecan, or a cytostatic drug, such as etoposide and teniposide. In other embodiments, such an additional therapeutic agent may be selected from a growth factor inhibitor, such as an inhibitor of ErbB1 (EGFR) (such as an EGFR antibody, e.g. zalutumumab, cetuximab, panitumumab or nimotuzumab or other EGFR inhibitors, such as gefitinib or erlotinib), another inhibitor of ErbB2 (HER2/neu) (such as a HER2 antibody, e.g. trastuzumab, trastuzumab-DMI or pertuzumab) or an inhibitor of both EGFR and HER2, such as lapatinib). In other embodiments, such an additional therapeutic agent may be selected from a tyrosine kinase inhibitor, such as imatinib or lapatinib.
[0131] In another aspect, the present invention relates to the multispecific antigen-binding molecule for use in a method of targeting a tumor in a subject, the method comprising administering to the subject the multispecific antigen-binding molecule. Tumors which may be targeted in accordance with the present invention include malignant and non-malignant tumors. Malignant (including primary and metastatic) tumors which may be treated include, but are not limited to, those occurring in the adrenal glands; bladder; bone; breast; cervix; endocrine glands (including thyroid glands, the pituitary gland, and the pancreas); colon; rectum; heart; hematopoietic tissue; kidney; liver; lung; muscle; nervous system; brain; eye; oral cavity; pharynx; larynx; ovaries; penis; prostate; skin (including melanoma); testicles; thymus; and uterus. Examples of such tumors include apudoma, choristoma, branchioma, malignant carcinoid syndrome, carcinoid heart disease, carcinoma (e.g., Walker, basal cell, basosquamous, Brown-Pearce, ductal, Ehrlich tumor, in situ, Krebs 2, Merkel cell, mucinous, non-small cell lung, oat cell, papillary, scirrhous, bronchiolar, bronchogenic, squamous cell, and transitional cell), plasmacytoma, melanoma, chondroblastoma, chondroma, chondrosarcoma, fibroma, fibrosarcoma, giant cell tumors, histiocytoma, lipoma, liposarcoma, mesothelioma, myxoma, myxosarcoma, osteoma, osteosarcoma, Ewing's sarcoma, synovioma, adenofibroma, adenolymphoma, carcinosarcoma, chordoma, mesenchymoma, mesonephroma, myosarcoma, ameloblastoma, cementoma, odontoma, teratoma, thymoma, trophoblastic tumor, adenocarcinoma, adenoma, cholangioma, cholesteatoma, cylindroma, cystadenocarcinoma, cystadenoma, granulosa cell tumor, gynandroblastoma, hepatoma, hidradenoma, islet cell tumor, Leydig cell tumor, papilloma, Sertoli cell tumor, theca cell tumor, leiomyoma, leiomyosarcoma, myoblastoma, myoma, myosarcoma, rhabdomyoma, rhabdomyosarcoma, ependymoma, ganglioncuroma, glioma, mcdulloblastoma, meningioma, neurilemnnoma, neuroblastoma, neuroepithelioma, neurofibroma, neuroma, paraganglioma, paraganglioma nonchromaffin, angiokeratoma, angiolymphoid hyperplasia with eosinophilia, angioma sclerosing, angiomatosis, glomangioma, hemangioendothelioma, hemangioma, hemangiopericytoma, hemangiosarcoma, lymphangioma, lymphangiomyorna, lymphangiosarcoma, pinealoma, carcinosarcoma, chondrosarcoma, cystosarcoma phyllodes, fibrosarcoma, hemangiosarcoma, leiomyosarcoma, leukosarcoma, liposarcoma, lymphangiosarcoma, myosarcoma, myxosarcoma, ovarian carcinoma, rhabdomyosarcoma, sarcoma (e.g., Ewing's experimental, Kaposi's, and mast-cell), neoplasms and for other such cells. The administration may include intradermal, intramuscular, intraperitoneal, intravenous, subcutaneous, intranasal, epidural, and oral routes.
[0132] Similarly, the invention relates to a method for killing a tumor cell expressing a tumor-associated target molecule, such as HER2, comprising administration, to an individual in need thereof, of an effective amount of the multispecific antigen-binding molecule, such as a bispecific antibody, of the present invention, such as an antibody drug-conjugate (ADC).
[0133] In one embodiment, said tumor cell is involved in a form of cancer selected from the group consisting of: breast cancer, prostate cancer, non-small cell lung cancer, bladder cancer, ovarian cancer, gastric cancer, colorectal cancer, esophageal cancer and squamous cell carcinoma of the head & neck, cervical cancer, pancreatic cancer, testis cancer, malignant melanoma, and a soft-tissue cancer (e.g. synovial sarcoma).
[0134] In yet another aspect, the present invention relates to a pharmaceutical composition comprising the multispecific antigen-binding molecule as an active ingredient. Advantageously, such pharmaceutical composition is formulated with suitable excipients, such as antioxidants, anti-bacterial agents, chelating agents, buffering agents, coloring agents, flavoring agents, diluting agents, emulsifying agents and/or suspending agents. The pharmaceutical composition may be administered by infusion, by bolus injection, by absorption through epithelial or mucocutaneous linings. In some embodiments, the pharmaceutical composition of the present invention may comprise one or more additional pharmaceutically active ingredients, such cytotoxic substances or anti-cancer drugs.
[0135] In another aspect, the present invention relates to a method of treatment of a disease comprising administering the multispecific antigen-binding molecule of the present invention or the pharmaceutical composition of the present invention to a subject in need thereof.
[0136] In another aspect, the present invention relates to nucleic acids, such as DNA molecules, encoding a multispecific antigen-binding molecule according to the present invention. The nucleic acid may encode heavy and light chains of bispecific antigen-binding molecule, such as an antibody, of the present invention.
[0137] In another aspect, the present invention relates to an expression vector, or a set of expression vectors, containing said nucleic acid and being capable of expressing said nucleic acid in prokaryotic or eukaryotic host cell lines. The heavy and light chain of the antibody may be encoded by the same vector or by different vectors depending on the bispecific antibody technology used. Such expression vectors may be used for recombinant production of antibodies of the invention.
[0138] An expression vector in the context of the present invention may be any suitable vector, including chromosomal, non-chromosomal, and synthetic nucleic acid vectors (a nucleic acid sequence comprising a suitable set of expression control elements). Examples of such vectors include derivatives of SV40, bacterial plasmids, phage DNA, baculovirus, yeast plasmids, vectors derived from combinations of plasmids and phage DNA, and viral nucleic acid (RNA or DNA) vectors. In one embodiment, the antibody-encoding nucleic acids are comprised in a naked DNA or RNA vector, including, for example, a linear expression element, a compacted nucleic acid vector, a plasmid vector such as pBR322, pUC 19/18, or pUC 118/119, a “midge” minimally-sized nucleic acid vector, or as a precipitated nucleic acid vector construct, such as a CaPO4-precipitated construct.
[0139] In another aspect, the present invention relates to prokaryotic or eukaryotic host cell lines comprising said vectors. A host cell is a cell into which the expression vector has been introduced, i.e. the expression vector encoding a homodimeric monospecific precursor molecules when Duobody technology is used to generate the bispecific antigen-binding molecule, of the present invention. or the single host cells comprising nucleic acids encoding the bispecific molecules of the invention. Recombinant host cells include, for example, transfectomas, such as CHO cells, HEK293 cells, NS/0 cells, and lymphocytic cells.
[0140] In another embodiment the present invention relates to anti-idiotypic antibodies raised against the multispecific antigen-binding molecule of the invention as defined above. An anti-idiotypic (Id) antibody is an antibody which recognizes unique determinants generally associated with the antigen-binding site of an antibody. An Id antibody may be prepared by immunizing an animal with the multispecific antigen-binding molecule, such as a bispecific antibody as describe above to which an anti-Id is being prepared. The immunized animal typically can recognize and respond to the idiotypic determinants of the immunizing bispecific antibody by producing an antibody to these idiotypic determinants (the anti-Id antibody).
[0141] In one embodiment the anti-idiotypic antibody is used for detecting the level of a multispecific antigen-binding molecule as defined above, in a sample.
EXAMPLES
Example 1
Antibody Generation, Site-Directed Mutagenesis and Duostatin-3 Conjugation
[0142] Cloning and production of the human HER2 antibody IgG1-153 has been described elsewhere; de Goeij B.E.C.G. MAbs, 2014. 6(2): p. 392-402. The variable domain heavy and light chain regions of the mouse monoclonal CD63 antibody 2192 (see Table 1 below, SEQ ID Nos. 1 and 5) were obtained from hybridoma 2.19 (Metzelaar M. J. Virchows Arch B Cell Pathol Incl Mol Pathol, 1991. 61(4): p. 269-77), by 5′-RACE of the variable regions from hybridoma-derived RNA and sequencing. Variable regions were cloned in the mammalian expression vector pcDNA3.3 (Invitrogen) containing the relevant human light chain constant domains (codon optimized, Invitrogen) with the relevant human heavy chain constant domain mutations (K409R or F405L). The human-mouse chimeric CD63 antibody was referred to as wild type IgG1-CD63. IgG1-CD63 antibody mutations were introduced in the variable domains either by site directed mutagenesis or direct gene synthesis, with the aim to generate a panel of IgG1-CD63 affinity variants. The amino acid mutations were indicated in the antibody names (i.e. anti-CD63-N74H has an asparagine to histidine mutation at amino acid position 74 of the heavy chain (SEQ ID No. 1, Table 1), anti-CD63-LN54H has a asparagine to histidine mutation at position 54 of the light chain, as numbered in SEQ ID No. 5, Table 1. Antibodies were produced by co-transfection of heavy chain and light chain vectors and transient expression in HEK-293 freestyle cells (Invitrogen) as described by Vink T. Methods, 2014. 65(1): p. 5-10. Bispecific antibodies (Duobody) were made by controlled Fab-arm exchange as described by Labrijn A.F. Nat Protoc, 2014. 9(10): p. 2450-63. The HIV gp120-specific human antibody IgG1-b12 was included as isotype control, see; Parren P.W.H.I. AIDS, 1995. 9(6): p. F1-6.
[0143] Duostatin-3 conjugated antibodies were generated by covalent conjugation of valine-citrulline-duostatin-3 (Duo3) on antibody lysine groups of IgG1-HER2-F405L and IgG1-b12-F405L as described by de Goeij B.E.C.G. Mol Cancer Ther. 2015. 14(5):1130-40. The bispecific ADCs bsHER2xCD63-Duo3 and bsHER2xb12-Duo3 were generated by Fab-arm exchange of the Duo3-conjugated antibody IgG1-HER2-F405L-Duo3 with unconjugated IgG1-CD63-K409R or IgG1-b12-K409R. The bispecific ADC bsCD63xb12-Duo3 was generated by Fab-arm exchange of IgG1-b12-F405L-Duo3 with IgG1-CD63-K409R. All bispecific ADCs had a DAR of 1. To generate control ADCs with a DAR of 1, IgG1-HER2-F405L-Duo3 and IgG1-b12-F405L-Duo3 were Fab-arm exchanged with IgG1-HER2-K409R and IgG1-b12-K409R, to generate IgG1-HER2-Duo3 and IgG1 b12-Duo3, respectively. The DAR of the ADCs was determined by hydrophobic interaction chromatography (HIC).
TABLE-US-00001 TABLE 1 Heavy chain variable region (VH), light chain variable region (VL) and CDR sequences of the anti-CD63 antibody 2192 SEQ ID No: 1 VH 2192 20 30 40 50 Amino acid | | | | positions EVQLQQSGPE LVKPGASVKM SCKASGYTFT SYVMHWVRQT 20-143 60 70 80 90 | | | | PGQGLEWIGY ITPYNDGTKY NEKFKGKATL TSDKSSSTAY 100 110 120 130 | | | | MELSSLTSED SAVYYCVGGD NYYYAMDYWG QGTSVTVSAA 140 | STKG SEQ ID No: 2 VH 2192, CDR1 GYTFTSYV SEQ ID No: 3 VH 2192, CDR2 ITPYNDGT SEQ ID No: 4 VH 2192, CDR3 VGGDNYYYAMDY SEQ ID No: 5 VL2192 21 30 40 50 Amino acid | | | | positions NIMVTQSPS SLAVSAGEKV TMSCKSSQSV LYSSNQKNYL 21-134 60 70 80 90 | | | | AWYQQKPGQS PKLLIYWAST RVSGVPDRFT GSGSGTDFTL 100 110 120 130 | | | | TISRVQAEDL AVYYCHQYFS SFTFGSGTKL EIKRT SEQ ID No: 6 VL2192, CDR1 QSVLYSSNQKNY SEQ ID No: 7 VL2192, CDR2 WAS SEQ ID No: 8 VL2192, CDR3 HQYFSSFT SEQ ID No: 9 LN54H mutation QSVLYSSHQKNY in VL CDR1 SEQ ID No: 10 T71H mutation in IHPYNDGT VH CDR2 SEQ ID No: 11 P72H mutation in ITHYNDGT VH CDR2 SEQ ID No: 12 N74H mutation in ITPYHDGT VH CDR2
Example 2
CD63 Binding ELISA
[0144] To improve efficacy of ADCs, a bispecific ADC was generated that specifically binds to a target protein (T) with one Fab-arm, while its second Fab-arm binds an effector protein (E), that facilitates internalization and lysosomal delivery of the cytotoxic payload. The resulting bsADC should induce cytotoxicity in cells that express both T and E. Some cytotoxicity may also be induced in cells that express T but not E, whereas the bsADC should not induce cytotoxicity in cells that express E but not TCD63 is used as effector protein (E). To ensure tumor specificity of the bsAb, the anti-CD63 arm (E) of the bsAb should preferably not bind and internalize in the absence of the tumor-specific arm (T) or only do this to a very limited degree. A panel of IgG1-CD63 variants with mutations in the variable region was generated as described supra. The IgG1-CD63 antibody variants were screened for binding to soluble CD63 with ELISA. In short, ELISA plates (Greiner) were coated overnight at 4° C. with 0.8 μg/mL goat anti-human IgG (Jackson). The plates were blocked with 2% chicken serum and incubated with 1 μg/mL histidine-mutated variants of anti-CD63 mAb 2192. Serially diluted (1-0.0005 μg/mL) recombinant human CD63 (Creative Biomart) was added followed by 1 μg/mL mouse anti-poly-histidine-biotin (R&D). The reaction was visualized using ABTS and stopped with oxalic acid. Fluorescence at 405 nm was measured and depicted using GraphPad Prism 6 software.
[0145] As seen in
Example 3
CD63 Affinity Measurements
[0146] The binding kinetics of anti-CD63 antibodies to recombinant human CD63 second extracellular domain (Ala 103-Val 203) fused with a polyhistidine tag at the C-terminus and a signal peptide at the N-terminus (Creative BioMart) was assessed using label-free Bio-Layer Interferometry on an Octet HTX (ForteBio). Wt IgG1-CD63 or affinity variants thereof were immobilized for 1000 s on Anti-Human IgG Fc Capture Biosensors (ForteBio) at 1 μg/mL. Association and dissociation kinetics of human His-tagged CD63 (100 nM, 50 nM, 25 nM and 12.5 nM, concentrations were calculated using the predicted molecular weight of 13 kDa) were determined in Sample Diluent (ForteBio), using an association time of 1000 s, a dissociation time of 2000 s and a shaker speed of 1000 rpm at 30° C. Data traces were corrected using a reference sensor exposed to Sample Diluent only during the association and dissociation steps, the Y-axis was aligned to baseline and Inter-step correction as well as Savitzky-Golay filtering were applied. The association rate constant K.sub.on (1/Ms), dissociation rate constant K.sub.dis (1/s) and equilibrium dissociation constant K.sub.D (M) were determined with ForteBio Data Analysis Software v8.1, using the 1:1 model and a global full fit. A dissociation time of 1000 s was used for the calculation of the K.sub.D, except for the affinity variants T71, P72, N74, Y121, LV49 and LY51 for which a dissociation time of 200 s was used.
[0147] A broad range of Ab-affinities was measured ranging from 3.6×10.sup.−10-2.7×10.sup.−8 M for the different anti-CD63 antibody variants (see
TABLE-US-00002 TABLE 2 K.sub.D (M) k.sub.on (1/Ms) k.sub.Off (1/s) WT 5.4 × 10−.sup.10 2.0 × 10.sup.5 1.1 × 10.sup.−4 Y46 7.8 × 10.sup.−10 2.0 × 10.sup.5 1.6×10.sup.−4 Y79 6.7 × 10.sup.−10 2.1 × 10.sup.5 1.4 × 10.sup.−4 Y127 5.4 × 10.sup.−10 2.0 × 10.sup.5 1.1 × 10.sup.−4 LQ47 3.7 × 10.sup.−10 1.8 × 10.sup.5 6.7 × 10.sup.−5 LS52 3.6 × 10.sup.−10 1.7 × 10.sup.5 6.3 × 10.sup.−5 T71 7.3 × 10.sup.−9 1.5 × 10.sup.5 1.1 × 10.sup.−3 P72 3.3 × 10.sup.−9 1.7 × 10.sup.5 5.7 × 10.sup.−4 N74 4.1 × 10.sup.−9 1.7 × 10.sup.5 6.9 × 10.sup.−4 LN54 2.0 × 10.sup.−9 1.9 × 10.sup.5 3.9 × 10.sup.−4 G76 1.7 × 10.sup.−8 2.2 × 10.sup.4 3.8 × 10.sup.−4 Y121 2.0 × 10.sup.−8 7.0 × 10.sup.4 1.4 × 10.sup.−3 LV49 2.7 × 10.sup.−8 3.7 × 10.sup.4 2.0 × 10.sup.−3 LY51 2.0 × 10.sup.−8 9.8 × 10.sup.4 1.9 × 10.sup.−3
Example 4
Cytotoxicity of Affinity Variants of bsCD63xHER2-Duo3 ADCs and Affinity Variants of Monovalent bsCD63xb12-Duo3 ADCs Using HCC1954, SK-OV-3 and Colo205 Cells
[0148] Binding of the bsADC to tumor cells expressing both the target protein (T) and the effector protein (E), should preferentially result in cytotoxicity. However, in absence of tumor-associated target protein (T), the bsADC should preferably not induce cytotoxicity. A number of bsADCs were generated targeting CD63 (E) and HER2 (T), using the different anti-CD63 affinity variants. The same anti-CD63 affinity variants were also used to generate bsADCs targeting CD63 and HIV gp120. HIV gp120 is a viral protein that is not expressed on the tested tumor cells. Therefore bsADCs targeting CD63 and gp120 (i.e. bsADCs containing binding domains derived from a CD63 antibody and the gp120-specific antibody IgG1-b12), can only bind to CD63, which reflects the activity of the ADC on normal tissue that lacks expression of T.
[0149] Cytotoxicity of the bsADCs was tested using HCC1954, SK-OV-3 and Colo205 cells. Cells were seeded in 96-well tissue culture plates (5,000 cells/well) and incubated for 6 hours at 37° C. Serially diluted ADCs (10-0.0005 μg/mL) were added and the cells were incubated for 4 days at 37° C. Cell viability was assessed using CellTiter-GLO (Promega), according to the manufacturer's guidelines. The percentage of viable cells was depicted as a percentage relative to untreated cells (0% cell death) and staurosporin-treated cells (100% cell death). Percentage viable cells=(RFU ADC treated cells−RFU staurosporin-treated cells)×100/(RFU untreated cells−RFU staurosporin-treated cells)
[0150] RFU=Relative Fluorescence Units
[0151]
TABLE-US-00003 TABLE 3 IC50 values HCC1954 HCC1954 SKOV3 SKOV3 Colo205 Colo205 IC50 (μg/mL) IC50 (μg/mL) IC50 (μg/mL) IC50 (μg/mL) IC50 (μg/mL) IC50 (μg/mL) b12x . . . HER2x . . . b12x . . . HER2x . . . b12x . . . HER2x . . . WT 0.424 0.009 0.815 0.017 2.610 0.416 HER2xb12 — 0.172 — 0.762 — 10.000 CD63 variant↓: Y46 0.900 0.016 1.370 0.045 5.643 0.754 Y79 0.420 0.008 0.930 0.021 3.407 0.432 Y127 0.664 0.017 1.079 0.061 1.889 0.472 LQ47 0.753 0.017 1.112 0.048 2.432 0.587 LS52 0.662 0.018 1.129 0.047 2.248 0.567 T71 4.886 0.030 3.803 0.115 10.000 2.228 P72 0.920 0.014 1.719 0.028 10.000 1.402 N74 1.350 0.017 1.988 0.037 3.927 1.346 LN54 1.547 0.013 3.354 0.021 10.000 1.689 V52 10.000 0.088 0.869 0.265 10.000 10.000 G76 10.000 0.104 3.057 0.351 1.415 10.000 Y121 10.000 0.073 5.463 0.259 10.000 10.000 LV49 1.646 0.065 1.398 0.314 10.000 10.000 LY51 5.274 0.069 4.522 0.207 10.000 10.000
[0152] BsADCs in
[0153] To conclude, CD63 antibodies depicted in
Example 5
Lysosomal Co-Localization of Affinity Variants of Monovalent bsCD63xb12 ADCs
[0154] A confocal microscopy experiment was performed to confirm that CD63xb12 bispecific antibodies with reduced affinity for CD63 show less internalization and lysosomal transport. SK-OV-3 cells were cultured on glass coverslips (Thermo Fisher Scientific) at 37° C. for 16 hours. Antibody (2 and 10 μg/mL) was added and cells were incubated for 16 hours at 37° C. Cells were fixed, permeabilized and incubated 45 min with goat anti-human IgG1-FITC (Jackson) to stain for human IgG and mouse anti-human CD107a-APC (BD) to stain for lysosomes. Coverslips were mounted (Calbiochem) on microscope slides and imaged with a Leica SPE-II confocal microscope (Leica Microsystems) equipped with LAS-AF software. 12-bit grayscale TIFF images were analyzed for co-localization using MetaMorph® software (Molecular Devices). Co-localization was depicted as arbitrary units [AU] representing the total pixel intensity of antibody overlapping with the lysosomal marker LAMP1. This value was divided by the total pixel intensity of LAMP1, to correct for differences in cell density between different images.
[0155] As seen in
Example 6
Binding of bsHER2xCD63.SUB.N74H .to SK-OV-3 Cells as Determined by Flow Cytometry
[0156] Based on its ability to induce cytotoxicity with low IC50 value as bsCD63xHER2-ADC, while inducing limited cytotoxicity as bsCD63xb12-ADC, clone anti-CD63-N74H was selected for further analysis. The binding of bsHER2xCD63.sub.N74H to HER2 positive SK-OV-3 cells was tested using flow cytometry (FACS Canto II, BD Biosciences). Serially diluted antibodies were incubated 30 minutes at 4° C. with SK-OV-3 cells. Antibody binding was detected using a Phycoerythrin-conjugated goat-anti-human IgG antibody (Jackson) and samples were analyzed on a flow cytometer. IgG1-b12 was used as isotype control antibody. The resulting data shown in
[0157] As seen in
Example 7
mAb-FITC Accumulation Assay with bsHER2xCD63.SUB.N74H .and bsCD63.SUB.N74H.xb12 on Whole Blood Cells
[0158] To demonstrate that bsHER2xCD63.sub.N74H does not bind to, and accumulate in, healthy tissues that do not express the model tumor antigen HER2, bsHER2xCD63.sub.N74H and monovalent and bivalent control antibodies were conjugated with FITC. Their accumulation was investigated in granulocytes and thrombocytes of healthy donors that do not express HER2. Whole blood samples from healthy donors were collected in Heparin tubes. Whole blood was diluted 1:2 in RPMI-1640 supplemented with 10% heat-inactivated cosmic calf serum. Anti-CD63 antibodies were conjugated with FITC (Thermo Scientific) according to manufacturer's instruction and added to whole blood cells at final concentration of 10 μg/mL.
[0159] Following 1 hour incubation at 4° C. or 3 and 16 hours incubation at 37° C., erythrocytes were lysed by incubating 15 minutes at 4° C. with erythrocyte lysis buffer (155 mM NH.sub.4Cl, 10 mM KHCO.sub.3 and 0.1 mM EDTA at pH 7.4). Fluorescence intensities of FITC were measured on a flow cytometer (BD). Granulocytes were gated using mouse anti-human CD66b-PerCP-Cy5.5 (BD) and thrombocytes were gated using mouse anti-human CD62-APC (BD).
[0160]
Example 8
Confocal Microscopy, Lysosomal Co-Localization of bsHER2xCD63N74H Followed Over Time
[0161] The internalization and lysosomal co-localization of bsHER2xCD63N74H was followed over time. SK-OV-3 cells (20.000) were grown on glass coverslips (Thermo Fisher Scientific) at 37° C. for 16 hours. One hour prior to antibody treatment, cells were pre-incubated with 50 pg/mL leupeptin (Sigma) to block lysosomal activity. Antibody (5 or 1 μg/mL) was added and cells were incubated for 1, 3, or 16 hours at 37° C. Cells were fixed, permeabilized, and incubated 45 min with goat anti-human IgG1-FITC (Jackson) to stain for human IgG and mouse anti-human CD107a-APC (BD) to stain for lysosomes. Hoechst (Molecular Probes, 1:10.000) was added to stain the nucleus (5 minutes at RT). Coverslips were mounted (Calbiochem) on microscope slides and imaged with a Leica SPE-II confocal microscope (Leica Microsystems) equipped with LAS-AF software. 12-bit grayscale TIFF images were analyzed for co-localization using MetaMorph® software (Molecular Devices). Co-localization was depicted as arbitrary units [AU] representing the total pixel intensity of antibody overlapping with the lysosomal marker LAMP1. This value was divided by the total pixel intensity of LAMP1, to correct for differences in cell density between different images. Total IgG staining was depicted as the total pixel intensity of FITC, divided by the total pixel intensity of LAMP1.
[0162] The grey bars in
Example 9
BsHER2xCD63.SUB.N74H .Induces Downmodulation of HER2
[0163] Using a HER2 downmodulation ELISA it was investigated if the strong lysosomal targeting observed with bsHER2xCD63.sub.N74H, also resulted in increased downmodulation of the targeted antigen. AU565, SK-OV-3 and Colo 205 cells were seeded (1 million cells/flask) in T25 flasks (Greiner) and incubated overnight at 37° C. to obtain a confluent monolayer. Antibodies were added (10 μg/mL) and cells were cultured for another 3 days at 37° C., washed and lysed. Total protein levels were quantified using bicinchoninic acid (BCA) protein assay reagent (Pierce), according to manufacturer's instruction. Next, ELISA plates (Greiner) were coated with 1 μg/mL rabbit anti-human HER2 (Cell Signaling Technology), blocked with 2% chicken serum (Hyclone) and incubated with 50 μL cell lysate. Goat anti-human HER2-biotin (R&D, 50 ng/mL) was added to detect HER2, followed by streptavidin-poly-HRP (Sanquin, 100 ng/mL). The reaction was visualized using ABTS and stopped with oxalic acid. Fluorescence at 405 nm was measured and the amount of HER2 was expressed as a percentage relative to untreated cells.
[0164] The total amount of HER2 protein in tumor cell lines with different expression levels of HER2; AU565 (500,000 HER2/cell,
Example 10
Cytotoxicity Induced by Duostatin-3 Conjugated ADCs
[0165] Cells were seeded in 96-well tissue culture plates (5,000 cells/well) and left to adhere for 6 hours at 37° C. Serially diluted ADCs (10-0.0005 μg/mL) were added and the cells were incubated another for 3 days at 37° C. Cell viability was assessed using CellTiter-GLO (Promega), according to the manufacturer's guidelines. The percentage of viable cells was depicted as a percentage relative to untreated cells.
[0166] As seen in
[0167] The monovalent bsHER2xb12 killed a similar percentage of cells as compared to IgG1-HER2-Duo3, but with a ˜10 fold reduced IC.sub.50 value. Cytotoxicity induced by bsHER2xCD63.sub.N74H-Duo3 ( ) on HCC1954 cells was equal to IgG1-HER2-Duo3. However on cells with lower copy numbers of HER2 (SK-OV-3 and to lesser extend Colo205), bsHER2xCD63.sub.N74H-Duo3 induced much more cytotoxicity as compared to ADCs only targeting HER2 (see
Example 11
Anti-Tumor Effect of bsHER2xCD63.SUB.N74H.-ADC on SK-OV-3 Tumor Xenografts
[0168] The anti-tumor effect of bsHER2xCD63.sub.N74H-ADC was investigated on SK-OV-3 tumor xenografts. 6-11 week old female SCID mice (C.B-17/IcrPrkdc-scid/CRL) were purchased from Charles River. Subcutaneous tumors were induced by inoculation of 5×10.sup.6 SK-OV-3 cells in the right flank of the mice. Tumor volumes were calculated from digital caliper measurements as 0.52×length×width.sup.2 (mm.sup.3). When tumors reached 200-400 mm.sup.3, mice were grouped into groups of 7 mice with equal tumor size distribution and mAbs were injected intraperitoneally (8 mg/kg). During the study, blood samples were collected into heparin-containing tubes to confirm the presence of human IgG in plasma. IgG levels were quantified using a nephelometer (Siemens Healthcare). Mice that did not show human IgG in plasma were excluded from the analysis.
[0169] As shown in
Example 12
Binding of bsBeta1xCD63.SUB.N74H .to SK-OV-3 Cells Detected with Flow Cytometry
[0170] It was investigated if a low affinity binding-domain directed against E can be used to enhance internalization and lysosomal targeting of other tumor antigens as well. Integrins have been described to rely on clustering for their internalization. Therefore a monovalent integrin antibody is expected to show minimal internalization and lysosomal targeting and may therefore represent a suitable model system to test if internalization can be enhanced in a bispecific format targeting T and E. To this end, antibody huK20 that targets the integrin Beta-1 was selected. The sequence of antibody huK20 was obtained from WO1996/008564 and cloned and produced as described in Example 1 thereof.
[0171] Binding of the IgG1-Beta1 antibody, a monovalent control bsBeta1xb12 and the bispecific antibody bsBeta1xCD63.sub.N74H to SK-OV-3 was investigated using flow cytometry (FACS Canto II, BD Biosciences). Serially diluted antibodies were incubated 30 minutes at 4° C. with SK-OV-3 cells. Following, antibody binding was detected using a Phycoerythrin-conjugated goat-anti-human IgG antibody (Jackson) and samples were analyzed on a flow cytometer. IgG1-b12 was used as isotype control antibody.
[0172] As seen in
Example 13
Lysosomal Co-Localization of bsBeta1xCD63.SUB.N74H .Measured with Confocal Microscopy
[0173] To investigate if dual targeting of integrin Beta-1 and CD63 results in increased lysosomal co-localization of bsBeta1xCD63.sub.N74H, a confocal microscopy experiment was performed with tumor cell lines that have different copy numbers of integrin Beta-1 on the plasma membrane. 20.000 SK-OV-3, NCl-H1975 and MDA-MB-468 cells were grown on glass coverslips (Thermo Fisher Scientific) at 37° C. for 4 hours. One hour prior to antibody treatment, cells were pre-incubated with 50 μg/mL leupeptin (Sigma) to block lysosomal activity. Antibody (2, 0.4, and 0.08 μg/mL) was added and cells were incubated for 16 hours at 37° C. Cells were fixed, permeabilized, and incubated 45 min with goat anti-human IgG1-FITC (Jackson) to stain for human IgG and mouse anti-human CD107a-APC (BD) to stain for lysosomes. Hoechst (Molecular Probes, 1:10.000) was added to stain the nucleus (5 minutes at RT). Coverslips were mounted (Calbiochem) on microscope slides and imaged with a Leica SPE-II confocal microscope (Leica Microsystems) equipped with LAS-AF software. 12-bit grayscale TIFF images were analyzed for co-localization using MetaMorph® software (Molecular Devices). Co-localization was depicted as arbitrary units [AU] representing the total pixel intensity of antibody overlapping with the lysosomal marker LAMP1. This value was divided by the total pixel intensity of LAMP1, to correct for differences in cell density between different images.
[0174] As seen in
Example 14
Confocal Microscopy, Internalization and Lysosomal Co-Localization of bsBeta1xCD63.SUB.N74H .Followed Over Time
[0175] To better understand the internalization and lysosomal co-localization kinetics of bsBeta1xCD63.sub.N74H, the internalization and lysosomal co-localization of bsBeta1xCD63.sub.N74H was followed over time. SK-OV-3 cells (20.000) were grown on glass coverslips (Thermo Fisher Scientific) at 37° C. for 16 hours. One hour prior to antibody treatment, cells were pre-incubated with 50 μg/mL leupeptin (Sigma) to block lysosomal activity. Antibody (2 μg/mL) was added and cells were incubated for 1, 3, or 16 hours at 37° C. Cells were fixed, permeabilized, and incubated 45 min with goat anti-human IgG1-FITC (Jackson) to stain for human IgG and mouse anti-human CD107a-APC (BD) to stain for lysosomes. Hoechst (Molecular Probes, 1:10.000) was added to stain the nucleus (5 minutes at RT). Coverslips were mounted (Calbiochem) on microscope slides and imaged with a Leica SPE-II confocal microscope (Leica Microsystems) equipped with LAS-AF software. 12-bit grayscale TIFF images were analyzed for co-localization using MetaMorph® software (Molecular Devices). Co-localization was depicted as arbitrary units [AU] representing the total pixel intensity of antibody overlapping with the lysosomal marker LAMP1, divided by the total pixel intensity of LAMP1. Total IgG staining was depicted as the total pixel intensity of FITC, divided by the total pixel intensity of LAMP1.
[0176] The grey bars in