METHOD FOR CONSTRUCTING L-VALINE PRODUCING STRAIN, L-VALINE PRODUCING STRAIN AND USE THEREOF
20260028652 ยท 2026-01-29
Inventors
Cpc classification
C12N15/74
CHEMISTRY; METALLURGY
C12P13/08
CHEMISTRY; METALLURGY
C12Y402/01009
CHEMISTRY; METALLURGY
C12N9/1022
CHEMISTRY; METALLURGY
International classification
C12P13/08
CHEMISTRY; METALLURGY
C12N15/74
CHEMISTRY; METALLURGY
Abstract
The present invention provides a method for constructing an L-valine production strain, the L-valine production strain, and use thereof. According to the method for constructing the L-valine-producing strain, a 2,3-butanediol- or acetoin-producing strain is used as a starting strain, and genetic engineering modification is performed on the strain to improve the L-valine yield thereof. The present invention provides a new thought and way for efficient production of L-valine, and obtains a new production strain for efficiently producing L-valine. The L-valine-producing strain obtained in the present invention requires a simple culture medium and has low fermentation substrate and culture costs; meanwhile, the strain has a high L-valine yield and has a single product component easy to separate.
Claims
1. A method for constructing an L-valine producing strain, comprising genetically engineering a 2,3-butanediol or acetoin producing strain as a starting strain to increase L-valine production thereof.
2. The method according to claim 1, wherein the strain is subjected to the following engineering: 1) increasing the synthesis of -acetolactate; and 2) introducing an exogenous L-valine biosynthetic pathway.
3. The method according to claim 1, wherein the starting strain is selected from microorganisms of the genera Klebsiella, Enterobacter, Bacillus, Corynebacterium and Vibrio.
4. The method according to claim 3, wherein the starting strain is selected from Klebsiella oxytoca, Enterobacter cloacae, Escherichia coli, Vibrio natriegens, Corynebacterium glutamicum and Bacillus licheniformis.
5. The method according to claim 2, wherein the increasing the synthesis of -acetolactate comprises: i) inhibiting the synthesis of acetoin and/or 2,3-butanediol; and/or ii) inhibiting the synthesis of acetic acid, formic acid, ethanol, succinic acid and/or lactic acid.
6. The method according to claim 5, wherein the inhibiting the synthesis of acetoin and/or 2,3-butanediol comprises knocking out or knocking down one or more of the following coding genes in the starting strain: an -acetolactate decarboxylase coding gene budA, a 2,3-butanediol dehydrogenase coding gene budC and a glycerol dehydrogenase coding gene gldA.
7. The method according to claim 5, wherein the inhibiting the synthesis of acetic acid, formic acid, ethanol, succinic acid and/or lactic acid comprises knocking out or knocking down one or more of the following coding genes in the starting strain: a pyruvate oxidase coding gene pox, a phosphotransacetylase coding gene pta, a fumarate reductase subunit A coding gene frdA, a lactate dehydrogenase coding gene ldh, a pyruvate formate lyase coding gene pflB and an ethanol dehydrogenase coding gene adhE.
8. The method according to claim 2, wherein the introducing an exogenous L-valine biosynthetic pathway comprises introducing coding sequences of one or more of the following genes into the starting strain: a dihydroxyacid dehydratase gene, an L-leucine dehydrogenase gene and an acetohydroxyacid isomeroreductase gene.
9. The method according to claim 8, wherein the introducing an exogenous L-valine biosynthetic pathway comprises introducing coding sequence of one or more of the following genes into the starting strain: a dihydroxyacid dehydratase gene puDHT, a dihydroxyacid dehydratase gene dhaD, a dihydroxyacid dehydratase gene ilvD, an L-leucine dehydrogenase gene bcd, and an acetohydroxyacid isomeroreductase cofactor preference mutant protein gene ilvC.sup.M.
10. The method according to claim 2, wherein the engineering further comprises optimizing L-valine synthetic flux and/or enhancing L-valine efflux in the starting strain.
11. The method according to claim 10, wherein the optimizing L-valine synthetic flux and/or enhancing L-valine efflux in the starting strain comprises introducing coding sequences of one or more of the following genes into the starting strain: the acetohydroxyacid isomeroreductase cofactor preference mutant protein gene ilvC.sup.M, a branched-chain amino acid transporter gene brnFE, a branched-chain amino acid transporter gene ygaZH, an -acetolactate synthase gene alsS, an -acetolactate synthase gene budB, an acetohydroxyacid isomeroreductase gene ilvC, a dihydroxyacid dehydratase gene dhaD, and a dihydroxyacid dehydratase gene ilvD.
12. The method according to claim 8, and wherein the introducing coding sequences into the starting strain comprises integrating the coding sequences into a genome of the starting strain or expressing the coding sequence in the starting strain in a plasmid form; preferably, the introducing comprises introducing a single copy or multiple copies of the coding sequences of the genes; and preferably, the coding sequences of the genes are introduced in the form of respective single gene expression fragments or in the form of tandem expression fragments of the coding sequences of the genes.
13. The method according to claim 9, wherein the dihydroxyacid dehydratase gene puDHT is derived from Paralcaligenes ureilyticus, the dihydroxyacid dehydratase gene dhaD is derived from Sulfolobus solfataricus, the dihydroxyacid dehydratase gene ilvD is derived from Escherichia coli, the L-leucine dehydrogenase gene bcd is derived from Bacillus subtilis, and the acetohydroxyacid isomeroreductase cofactor preference mutant protein gene ilvC.sup.M is derived from Escherichia coli.
14. The method according to claim 11, wherein the acetohydroxyacid isomeroreductase cofactor preference mutant protein gene ilvC.sup.M is derived from Escherichia coli, the branched-chain amino acid transporter gene brnFE is derived from Corynebacterium glutamicum, the branched-chain amino acid transporter gene ygaZH is derived from Escherichia coli, the acetohydroxyacid isomeroreductase gene ilvC is derived from Escherichia coli, the dihydroxyacid dehydratase gene dhaD is derived from Sulfolobus solfataricus, the dihydroxyacid dehydratase gene ilvD is derived from Escherichia coli, the -acetolactate synthase gene alsS is derived from Bacillus subtilis, and the -acetolactate synthase gene budB is derived from Klebsiella pneumoniae.
15. An L-valine producing strain, which is constructed by the method according to claim 1.
16. The strain according to claim 15, wherein the strain is Klebsiella oxytoca with a deposit number of CCTCC M 20221743.
17. (canceled)
18. (canceled)
19. A method for producing L-valine, comprising the following steps: 1) providing the L-valine producing strain according to claim 15; 2) culturing the strain at 30-50 C. for 10-11 hours to provide a seed; and 3) fermenting the seed with glucose as a substrate at 30-50 C., a pH value of 6.0-7.0 and a ventilation volume of 0.5-1.6 vvm to obtain L-valine.
20. The method according to claim 19, wherein in the step 3), the inoculation amount of the seed is an OD.sub.620nm value reaching 0.2-0.8; preferably, the concentration of glucose is 40-60 g/L; and preferably, the fermentation culture is a stirred culture with a stirring rate of 300-550 rpm.
Description
BRIEF DESCRIPTION OF DRAWINGS
[0036]
DETAILED DESCRIPTION
[0037] The present invention is described in detail hereafter in conjunction with specific embodiments, so as to more clearly embody the aforementioned features and advantages of the present invention. The examples described hereafter are merely preferred embodiments of the present invention and are not intended to limit the present invention in any form. Therefore, the present invention is not limited to the specific examples disclosed hereafter in the specification.
[0038] Microorganisms such as Klebsiella oxytoca can efficiently synthesize 2,3-butanediol or acetoin by metabolizing carbohydrates such as glucose, etc. (Jantama K., Metab Eng., 2015, 30: 16-26). The intermediate metabolites in the 2,3-butanediol and acetoin biosynthesis pathway include -acetolactate. In the present invention, an efficient L-valine producing strain is constructed by utilizing the characteristics of -acetolactate that can be used as a precursor for the synthesis of L-valine as well as the strong -acetolactate synthesis ability of 2,3-butanediol or acetoin producing strains, and adopting a metabolic flow redirection strategy. The present invention proposes that the synthesis efficiency of the -acetolactate should be improved, while blocking the -acetolactate from entering the 2,3-butanediol synthesis pathway, introducing an exogenous L-valine biosynthesis pathway, and redirecting the intracellular -acetolactate metabolic flow from 2,3-butanediol synthesis to the exogenous L-valine synthesis pathway, thereby achieving efficient synthesis of L-valine.
[0039] Based on the aforementioned inventive concept, the present invention provides a method for constructing an L-valine producing strain, including genetically engineering a 2,3-butanediol or acetoin producing strain as a starting strain to increase L-valine production thereof.
[0040] Further, the present invention proposes to carry out the following engineering to the strain, which can effectively improve the production of L-valine: 1) increasing the synthesis of -acetolactate; and 2) introducing an exogenous L-valine biosynthetic pathway.
[0041] The term starting strain used herein refers to a strain that has not undergone the genetic engineering described in the present invention, which may be a wild-type strain or a recombinant strain that has undergone some or certain known modification(s) previously.
[0042] The term exogenous as used herein when referring to genes, coding sequences, proteins, enzymes, etc., refers to a substance that does not belong to the starting strain in a natural state. For example, an exogenous gene refers to a gene introduced from outside into a starting strain. The exogenous gene may be a gene already present in the genome of the strain or a gene not present in the genome of the strain. For example, as desired, a gene already present in the genome of the starting strain can be introduced from outside into the genome of the starting strain to overexpress the gene.
[0043] Preferably, the starting strain is selected from microorganisms of the genera Klebsiella, Enterobacter, Bacillus and Vibrio. More preferably, the starting strain is selected from Klebsiella oxytoca, Enterobacter cloacae, Escherichia coli, Vibrio natriegens, Corynebacterium glutamicum and Bacillus licheniformis.
[0044] In some specific preferred embodiments, the starting strain is selected from Klebsiella oxytoca PDL-0, Enterobacter cloacae SDM, Escherichia coli BL21/pET-RABC, Bacillus licheniformis 10-1-A, Corynebacterium glutamicum ATCC13032/pEKEx2-als, aldB, P.sub.tuf-butA and Vibrio natriegens ATCC14048/pET-RABC.
[0045] The present invention can increase the synthesis of -acetolactate by inhibiting the synthesis of acetoin and/or 2,3-butanediol and/or inhibiting the synthesis of by-products such as acetic acid, formic acid, ethanol, succinic acid, lactic acid, etc. A specific preferred embodiment for inhibiting the synthesis of acetoin and/or 2,3-butanediol includes knocking out or knocking down one or more of the following coding genes in the starting strain: an -acetolactate decarboxylase coding gene budA, a 2,3-butanediol dehydrogenase coding gene budC and a glycerol dehydrogenase coding gene gldA. A specific preferred embodiment for inhibiting the synthesis of acetic acid, formic acid, ethanol, succinic acid and/or lactic acid includes knocking out or knocking down one or more of the following coding genes in the starting strain: a pyruvate oxidase coding gene pox, a phosphotransacetylase coding gene pta, a fumarate reductase subunit A coding gene frdA, a lactate dehydrogenase coding gene ldh, a pyruvate formate lyase coding gene pflB and an ethanol dehydrogenase coding gene adhE.
[0046] Unless otherwise specified, the lactate dehydrogenase coding gene ldh described herein refers to a D-lactate dehydrogenase coding gene ldhD and/or an L-lactate dehydrogenase coding gene ldhL.
[0047] The term inhibit as used herein refers to that the function of the object of inhibition is completely lost or reduced compared with that before the inhibition is implemented.
[0048] The term knockout or knockdown as used herein refers to the loss or weakening of the function of a selected gene by genetic engineering means, including those commonly used in the art, e.g. inserting, substituting or deleting one or more nucleic acid fragments in the selected gene.
[0049] Preferably, the introducing an exogenous L-valine biosynthetic pathway includes introducing coding sequences of one or more of the following genes into the starting strain: a dihydroxyacid dehydratase gene, an L-leucine dehydrogenase gene and an acetohydroxyacid isomeroreductase gene. In some specific preferred embodiments, the coding sequences of one or more of the following genes are introduced into the starting strain: a dihydroxyacid dehydratase gene puDHT, a dihydroxyacid dehydratase gene dhaD, a dihydroxyacid dehydratase gene ilvD, an L-leucine dehydrogenase gene bcd, and an ilvD.sup.M.
[0050] In some specific preferred embodiments, the dihydroxyacid dehydratase gene puDHT is derived from Paralcaligenes ureilyticus, the dihydroxyacid dehydratase gene dhaD is derived from Sulfolobus solfataricus, the dihydroxyacid dehydratase gene ilvD is derived from Escherichia coli, the L-leucine dehydrogenase gene bcd is derived from Bacillus subtilis, and the acetohydroxyacid isomeroreductase cofactor preference mutant protein gene ilvC.sup.M is derived from Escherichia coli.
[0051] Preferably, the dihydroxyacid dehydratase gene puDHT, the dihydroxyacid dehydratase gene ilvD or the dihydroxyacid dehydratase gene dhaD is inserted into a gene site of the lactate dehydrogenase gene ldh of the starting strain. Preferably, the L-leucine dehydrogenase gene bcd is inserted into the gene site of the ethanol dehydrogenase gene adhE of the starting strain. Preferably, the acetohydroxyacid isomeroreductase cofactor preference mutant protein gene ilvC.sup.M is inserted into a gene site of the -acetolactate decarboxylase gene budA of the starting strain. In this way, the synthesis of 2,3-butanediol/acetoin can be inhibited or blocked, the synthesis of -acetolactate is increased, and redirection of the -acetolactate metabolic flux into the L-valine synthesis pathway is realized. Moreover, in the present invention an exogenous gene is inserted into the site of the knocked-out gene, which can satisfy the expression of the target gene as much as possible without affecting other genes.
[0052] The method of the present invention further includes optimizing L-valine synthesis flux and/or enhancing L-valine efflux in the starting strain, thereby obtaining an engineered strain that can more efficiently produce L-valine.
[0053] Preferably, the optimizing L-valine synthetic flux and/or enhancing L-valine efflux in the starting strain includes introducing coding sequences of one or more of the following genes into the starting strain: the acetohydroxyacid isomeroreductase cofactor preference mutant protein gene ilvC.sup.M, a branched-chain amino acid transporter gene brnFE, a branched-chain amino acid transporter gene ygaZH, an acetohydroxyacid isomeroreductase gene ilvC, a dihydroxyacid dehydratase gene dhaD, a dihydroxyacid dehydratase gene ilvD, an -acetolactate synthase gene alsS, an -acetolactate synthase gene budB.
[0054] In the case of Klebsiella oxytoca, preferably, the aforementioned dihydroxyacid dehydratase gene puDHT introduced into the starting strain is replaced by the dihydroxyacid dehydratase gene dhaD) and/or the dihydroxyacid dehydratase gene ilvD, thereby optimizing the source of the dihydroxyacid dehydratase and further improving the synthesis of L-valine.
[0055] In the step of optimizing the synthetic flux and enhancing the efflux, preferably, the acetohydroxyacid isomeroreductase cofactor preference mutant protein gene ilvC.sup.M is derived from Escherichia coli, the branched-chain amino acid transporter gene brnFE is derived from Corynebacterium glutamicum, the branched-chain amino acid transporter gene ygaZH is derived from Escherichia coli, the acetohydroxyacid isomeroreductase gene ilvC is derived from Escherichia coli, the dihydroxyacid dehydratase gene dhaD is derived from Sulfolobus solfataricus, the dihydroxyacid dehydratase gene ilvD is derived from Escherichia coli, the -acetolactate synthase gene alsS is derived from Bacillus subtilis, and the -acetolactate synthase gene budB is derived from Klebsiella pneumoniae.
[0056] In the step of optimizing the synthetic flux and enhancing the efflux, preferably, the acetohydroxyacid isomeroreductase cofactor preference mutant protein gene ilvC.sup.M and/or the acetohydroxyacid isomeroreductase gene ilvC are inserted into the site of glycerol dehydrogenase gene gldA of the starting strain. In this way, the copy number of the acetohydroxyacid isomeroreductase can be increased, thereby further improving the synthesis of L-valine. Preferably, the branched-chain amino acid transporter gene brnFE is inserted into the site of pyruvate formate lyase gene pflB of the starting strain. In this way, the L-valine efflux can be enhanced. Preferably, the -acetolactate synthase gene alsS is inserted into the site of 2,3-butanediol dehydrogenase gene budC of the starting strain. In this way, the synthesis efficiency of -acetolactate can be further improved, thereby further optimizing the L-valine synthesis flux.
[0057] In the case of Enterobacter cloacae, preferably, a gene tandem expression plasmid of the acetohydroxyacid isomeroreductase gene ilvC, the branched-chain amino acid transporter gene brnFE and the -acetolactate synthase gene alsS is constructed. In this way, the L-valine synthesis flux can be optimized, and the L-valine efflux can be enhanced.
[0058] The introducing the target gene coding sequence into the starting strain as described in the present invention includes integrating the target gene coding sequence into the genome of the starting strain or expressing the target gene coding sequence in the starting strain in the form of a plasmid. Depending on the desired expression strength of the inserted gene, a single copy or multiple copies of the coding sequence of the gene can be introduced into the starting strain.
[0059] The introduced coding sequences of the genes can be introduced into the starting strain in the forms of respective single gene expression fragments, and also can be introduced into the starting strain in the form of a tandem expression fragment of the gene coding sequence.
[0060] In some specific embodiments, the method for constructing an L-valine producing strain of the present invention includes the following steps: [0061] (1) PCR is performed by using the genome of a 2,3-butanediol or acetoin producing strain such as Klebsiella oxytoca PDL-0, Enterobacter cloacae SDM and Bacillus licheniformis 10-1-A as a template to obtain a recombinant fragment containing upstream and downstream homologous sequences of the target gene, the recombinant fragment is ligated to a plasmid pKR6K.sub.Cm, pK18mobsacB or pKVM1 and then transferred into strains such as Klebsiella oxytoca PDL-0, Enterobacter cloacae SDM and Bacillus licheniformis 10-1-A by conjugative transfer, and single-exchange transformants are screened by an M9 inorganic salt medium containing 20% citrate in combination with resistance or directly by resistance; and double exchange is conducted under the screening stress of a sucrose lethal gene sacB or temperature-induced screening conditions, and then PCR screening is performed to obtain a strain in which the target gene is knocked out successfully. By this method, genes involved in the formation of by-products (such as acetic acid, formic acid, ethanol, succinic acid and lactic acid) are knocked out from the starting strain. [0062] (2) PCR is performed by using the genome of a 2,3-butanediol or acetoin producing strain such as Klebsiella oxytoca PDL-0, Enterobacter cloacae SDM and Bacillus licheniformis 10-1-A as a template to obtain upstream and downstream homology arm sequences containing a gene such as pox, pta, frdA, ldhD, pflB, adhE, budA, budC or gldA; PCR is performed by using a dihydroxyacid dehydratase plasmid pET28a-puDHT synthesized from a full gene as a template to obtain a puDHT sequence, and the upstream and downstream homology arm sequences of the aforementioned genes and the puDHT sequence are recombined by recombinant PCR to obtain a recombinant fragment, which is ligated to pKR6K.sub.Cm, pK18mobsacB and pKVM1, and then transferred into recombinant strains of Klebsiella oxytoca PDL-0, Enterobacter cloacae SDM and Bacillus licheniformis 10-1-A, etc. in which byproduct-related gene knockout has been completed by conjugative transfer, and single-exchange transformants are screened by an M9 inorganic salt medium containing 20% of a citrate in combination with resistance or directly by resistance; and double exchange is conducted under the screening stress of a sucrose lethal gene sacB or temperature-induced screening conditions, and then PCR screening is performed to confirmed that the gene puDHT is successfully inserted into the genomes of recombinant strains of Klebsiella oxytoca PDL-0, Enterobacter cloacae SDM and Bacillus licheniformis 10-1-A, etc. According to the aforementioned gene replacement method, other exogenous genes are inserted into the genomes of recombinant strains of Klebsiella oxytoca PDL-0, Enterobacter cloacae SDM and Bacillus licheniformis 10-1-A in which byproduct-related gene knockout has been completed; or the target gene is expressed by using a plasmid: [0063] (3) PCR is performed by using the genome of Bacillus subtilis 168 as a template to obtain the sequences of an L-leucine dehydrogenase coding gene bcd and an -acetolactate synthase coding gene alsS; PCR is performed by using the genome of Klebsiella pneumoniae as a template to obtain an -acetolactate synthase coding gene budB; PCR is performed by using the genome of Escherichia coli W3110 as a template to obtain an acetohydroxyacid isomeroreductase coding gene ilvC, an acetohydroxyacid isomeroreductase cofactor preference mutant protein coding gene ilvC.sup.M(L67E,R68F,K75E) and a dihydroxyacid dehydratase coding gene ilvD; whole gene synthesis is conducted to obtain a dihydroxyacid dehydratase coding gene puDHT derived from P. ureilyticus; whole gene synthesis is conducted to obtain a dihydroxyacid dehydratase gene dha) derived from Sulfolobus solfataricus; PCR is performed by using the genome of Corynebacterium glutamicum ATCC13869 as a template to obtain a branched-chain amino acid transporter coding gene brnFE; and PCR is performed by using the genome of Escherichia coli W3110 as a template to obtain a branched-chain amino acid transporter coding gene ygaZH. Preferably, single gene expression fragments of the aforementioned one, preferably two or more, preferably three or more, preferably four or more, preferably five or more, preferably six or more, preferably seven or more, preferably eight or more, and more preferably nine or more genes are obtained, or a gene tandem expression fragment of the aforementioned genes is obtained by recombinant PCR, then connected to linearized expression plasmids pET-28a(+), pET-22b(+), pET25b(+), pETDuet-1, pKD4, pACYCDute and pMMB66EH etc., and then transferred into recombinant strains of Klebsiella oxytoca PDL-0, Enterobacter cloacae SDM, Escherichia coli BL21/pET-RABC, Bacillus licheniformis 10-1-A and Vibrio natriureticus ATCC14048/pET-RABC by electroporation or chemical transformation.
[0064] The present invention further provides an L-valine producing strain, which is characterized in that, the strain is constructed by the method according to the present invention,
[0065] Preferably, the strain is Klebsiella oxytoca with a deposit number of CCTCC M 20221743. This strain has been deposited in the China Center for Type Culture Collection (CCTCC) on Nov. 9, 2022, at the deposit address: Wuhan University, Wuhan, China, Postal Code: 430072, and the deposit number is: CCTCC M 20221743.
[0066] The present invention further provides use of the strain of the present invention in production of L-valine.
[0067] By utilizing the L-valine producing strain of the present invention for fermentation, L-valine can be efficiently obtained. Under the conditions of a fermentation volume of 5 liters and a fermentation time of 30-56 hours, the production can reach 45.1-122.0 g/L, the production intensity can reach 1.41-2.18 g/L/h, and the yield can reach 0.246-0.587 g/g.
[0068] In a preferred embodiment, the engineered strain of Klebsiella oxytoca of the present invention is utilized to produce L-valine. Under the conditions of a fermentation volume of 5 liters and a fermentation time of 56 hours, the production can reach 122.0 g/L and the yield can reach 0.587 g/g. The engineered strain of Enterobacter cloacae of the present invention is utilized to produce L-valine. Under the conditions of a fermentation volume of 5 liters and a fermentation time of 44 hours, the production of the L-valine can reach 94.3 g/L, the production intensity of the L-valine can reach 2.14 g/L/h, and the yield of the L-valine can reach 0.499 g/g. The engineered strain of Bacillus licheniformis of the present invention is utilized to produce L-valine. Under the conditions of a fermentation volume of 5 liters and a fermentation time of 32 hours, the production of the L-valine can reach 45.1 g/L, the production intensity of the L-valine can reach 1.41 g/L/h, and the yield of the L-valine can reach 0.246 g/g.
[0069] The present invention further provides a method for producing L-valine, including the following steps: [0070] 1) providing the L-valine producing strain of the present invention; [0071] 2) culturing the strain at 30-50 C. for 10-11 hours to provide a seed; and [0072] 3) fermenting the seed with glucose as a substrate at 30-50 C., a pH value of 6.0-7.0 and a ventilation volume of 0.5-1.6 vvm to obtain L-valine,
[0073] Preferably, in the step 3), the inoculation amount of the seed is an OD.sub.620nm value reaching 0.2-0.8.
[0074] Preferably, the concentration of glucose is 40-60 g/L.
[0075] Preferably, the fermentation culture is stirred culture. In fermentation production, the stirring speed can be adjusted according to the dissolved oxygen and is also related to the volume of a fermentation tank. Preferably, the stirring rate is 300-550 revolutions per minute (rpm).
[0076] In some specific embodiments of the present invention, fermentation production of L-valine using the Klebsiella oxytoca constructed by the present invention includes the following steps: [0077] (1) Plate culture: the recombinant strain of Klebsiella oxytoca is streaked onto an LB medium containing 1.6-1.8% (w/v) agar and cultured at 371 C. for 101 hours; [0078] (2) Seed culture: under sterile conditions, a single colony is picked from the plate in the step (1) with a tip of a sterile pipette, then inoculated into 5 mL of an LB liquid medium, and cultured with oscillating in a shaker at 371 C. for 101 hours; and then inoculated into 50 mL of a LB liquid medium at an inoculation amount of 1% (v/v) and cultured with oscillating in a shaker at 371 C. for 101 hours; [0079] (3) fermentation tank culture with glucose as a substrate: under sterile conditions, the bacterial solution obtained in the step (2) was taken and inoculated into a fermentation medium containing 50-60 g/L of glucose at an inoculation amount of 10% (v/v). The fermentation conditions are as follows: a culture temperature of 371 C., a culture manner of stirring culture, a stirring rotation speed of 50050 revolutions per minute, a ventilation volume of 1.60.1 vvm, a pH maintained at 6.80.1 by adjusting with ammonia water, and among the fermentations, samples are taken every 4 hours to detect OD.sub.620nm and the concentration of glucose in the fermentation sample. Glucose dry powder is added according to the glucose concentration to maintain the glucose concentration at 40-50 g/L. At the same time, the fermentation samples are subjected to high performance liquid chromatography analysis to determine the concentration of L-valine in the fermentation broth. When glucose is not consumed any more, fermentation is stopped and L-valine is obtained from the fermentation broth.
[0080] In some specific embodiments of the present invention, fermentation production of L-valine using the Enterobacter cloacae constructed by the present invention includes the following steps: [0081] (1) Plate culture: the recombinant Enterobacter cloacae strain is streaked onto an LB medium containing agar in a mass-volume ratio of 1.6-1.8% and cultured at 301 C. for 101 hours; [0082] (2) Seed culture: under sterile conditions, a single colony is picked from the plate in the step (1) with a tip of a sterile pipette, then inoculated into 5 mL of an LB liquid medium, and cultured with oscillating in a shaker at 301 C. for 101 hours; and then inoculated into 50 mL of a LB liquid medium at an inoculation amount of 1% (v/v) and cultured with oscillating in a shaker at 301 C. for 101 hours; [0083] (3) fermentation tank culture with glucose as a substrate: under sterile conditions, the bacterial solution obtained in the step (2) was taken and inoculated into a fermentation medium containing 50-60 g/L of glucose at an inoculation amount of 5% (v/v). The fermentation conditions are as follows: a culture temperature of 301 C., a culture manner of stirring culture, a stirring rotation speed of 50050 revolutions per minute, a ventilation volume of 1.00.1 vvm, a pH maintained at 7.00.1 by adjusting with ammonia water, and among the fermentations, samples are taken every 4 hours to detect OD.sub.620nm and the concentration of glucose in the fermentation sample. Glucose dry powder is added according to the glucose concentration to maintain the glucose concentration at 40-50 g/L. At the same time, the fermentation samples are subjected to high performance liquid chromatography analysis to determine the concentration of L-valine in the fermentation broth. When glucose is not consumed any more, fermentation is stopped and L-valine is obtained from the fermentation broth.
[0084] In some specific embodiments of the present invention, fermentation production of L-valine using the Bacillus licheniformis constructed by the present invention includes the following steps: [0085] (1) Plate culture: the recombinant Bacillus licheniformis strain is streaked onto an LB medium containing agar in a mass-volume ratio of 1.6-1.8% and cultured at 501 C. for 101 hours; [0086] (2) Seed culture: under sterile conditions, a single colony is picked from the plate in the step (1) with a tip of a sterile pipette, then inoculated into 5 mL of an LB liquid medium, and cultured with oscillating in a shaker at 501 C. for 101 hours; and then inoculated into 50 mL of an LB liquid medium at an inoculation amount of 1% (v/v) and cultured with oscillating in a shaker at 501 C. for 101 hours; [0087] (3) fermentation tank culture with glucose as a substrate: under sterile conditions, the bacterial solution obtained in the step (2) was taken and inoculated into a fermentation medium containing 50-60 g/L of glucose at an inoculation amount of 5% (v/v). The fermentation conditions are as follows: a culture temperature of 501 C., a culture manner of stirring culture, a stirring rotation speed of 50050 revolutions per minute, a ventilation volume of 1.00.1 vvm, a pH maintained at 7.00.1 by adjusting with ammonia water, and among the fermentations, samples are taken every 4 hours to detect OD.sub.620nm and the concentration of glucose in the fermentation sample. Glucose dry powder is added according to the glucose concentration to maintain the glucose concentration at 40-50 g/L. At the same time, the fermentation samples are subjected to high performance liquid chromatography analysis to determine the concentration of L-valine in the fermentation broth. When glucose is not consumed any more, fermentation is stopped and L-valine is obtained from the fermentation broth.
[0088] In the aforementioned method for producing L-valine, the fermentation conditions of Klebsiella oxytoca are preferably: a culture temperature of 37 C., an inoculum amount of 10% (v/v), a culture manner of stirring culture, a stirring rotation speed of 500 revolutions per minute, a ventilation volume of 1.6 vvm, and a pH maintained at 6.8 by adjusting with ammonia water; the fermentation conditions of Enterobacter cloacae are preferably: a culture temperature of 30 C., an inoculum amount of 5% (v/v), a culture manner of stirring culture, a stirring rotation speed of 500 revolutions per minute, a ventilation volume of 1.0 vvm, and a pH maintained at 7.0 by adjusting with ammonia water; and the fermentation conditions of Bacillus licheniformis are preferably: a culture temperature of 50 C., an inoculum amount of 5% (v/v), a culture manner of stirring culture, a stirring rotation speed of 500 revolutions per minute, a ventilation volume of 1.0 vvm, and a pH maintained at 7.0 by adjusting with ammonia water.
[0089] A method for detecting the substrate glucose during the fermentation process can be carried out employing methods known in the art. For example, after the sample is appropriately diluted, it is measured using a biosensor analyzer SBA-40D (available from Biology Institute of Shandong Academy of Sciences). The determination principle is to utilize the immobilized glucose oxidase membrane to specifically determine the glucose content.
[0090] A method for detecting the fermentation product L-valine can be carried out employing methods known in the art. For example, the sample is diluted to an appropriate concentration, and centrifuged at 12,000 rpm for 1 min, and 400 L of the supernatant is taken, added with 200 L of a 0.1 M PITC-acetonitrile solution and 200 L of a 1 M triethylamine-acetonitrile solution, mixed well, and allowed to stand at room temperature with protection from light for 1 h. Then, the mixture is added with 800 L of n-hexane, vortexed under shaking for 1 min, and allowed to stand at room temperature with protection from light for 10 min. The liquid at the lower layer is taken, filtered through a 0.22 m filter membrane, and detected for L-valine through a liquid phase. The specific liquid phase detection conditions are as follows:
[0091] The model of the used liquid chromatograph is Agilent 1100, and the model of the chromatographic column is ZORBAX SB-C18 (2504.6 mm, Agilent, USA); the detector is a diode array (UV-Vis) detector; the detection wavelength is 254 nm; the mobile phase A is a 7.6% NaAc-7% acetonitrile aqueous solution (pH 6.5), and the mobile phase B is a 80% acetonitrile aqueous solution. Different proportions of the mobile phases A and B are used for gradient elution, specifically as follows: 0-7% of B for 0-11 min; 7-12% of B for 11-13.9 min; 12-15% of B for 13.9-14 min; 15-34% of B for 14-29 min; 100% of B for 29-37 min; 0% of B for 37-45 min; a flow rate of 0.6 mL/min; a column temperature of 40 C.; an injection volume of 5 L; and an analysis time of 45 min.
[0092] The separation of L-valine from the fermentation broth can be carried out by methods known in the art.
EXAMPLES
[0093] The technical content of the present invention is further described hereafter with reference to examples. The following examples are illustrative, rather than limiting, and cannot limit the claimed scope of the present invention. The experimental methods used in the following examples are conventional methods, unless otherwise specified. The materials, reagents, plasmids, kits, strains, etc. used in the following examples can all be commercially available, unless otherwise specified.
[0094] The formula of the M9 inorganic salt medium is: 12.069 g/L of Na.sub.2HPO.sub.4.Math.12H.sub.2O, 3 g/L of KH.sub.2PO.sub.4, 0.5 g/L of NaCl, 0.5 g/L of NH.sub.4Cl, 1 mL of a 1 M MgSO.sub.4 solution, 0.3 mL of a 1 M CaCl.sub.2 solution, 10 mL of a trace element solution (100), with the pH of the medium being adjusted to 6.8, and the medium being sterilized at 121 C. for 20 minutes. The formula of the trace element solution (100) is: 5 g/L of EDTA, 0.83 g/L of FeCl.sub.3.Math.6H.sub.2O, 84 mg/L of ZnCl.sub.2, 13 mg/L of CuCl.sub.2.Math.2H.sub.2O, 10 mg/L of CoCl.sub.2.Math.2H.sub.2O, 10 mg/L of H.sub.3BO.sub.3, and 1.6 mg/L of MnCl.sub.2.Math.4H.sub.2O.
[0095] The formula of the fermentation medium for Klebsiella oxytoca is as follows: 50-60 g/L of glucose, 5 g/L of yeast powder, 10 g/L of K.sub.2HPO.sub.4, 2 g/L of NaH.sub.2PO.sub.4, 10 g/L of NH.sub.4SO.sub.4, 0.1 g/L of MgSO.sub.4.Math.7H.sub.2O, 1 mL of a 1,000 trace element solution; wherein the formula of the 1,000 trace element solution is: 3.2 g/L of CaCl.sub.2.Math.2H.sub.2O, 3.8 g/L of ZnCl.sub.2, 30 g/L of FeCl.sub.3.Math.2H.sub.2O, 11.14 g/L of MnCl.sub.2.Math.2H.sub.2O, 0.96 g/L of CuCl.sub.2.Math.2H.sub.2O, 2.64 g/L of CoCl.sub.2.Math.2H.sub.2O, 0.35 g/L of H.sub.3BO.sub.3, and 0.024 g/L of NaMoO.sub.4.Math.2H.sub.2O.
[0096] The formula of the fermentation medium for Enterobacter cloacae is the aforementioned M9 inorganic salt medium added with 5 g/L of yeast powder and a corresponding concentration of glucose (50-60 g/L).
[0097] The formula of the fermentation medium for Bacillus licheniformis is: 50-60 g/L of glucose, 12 g/L of yeast powder, 6.5 g/L of anhydrous sodium acetate (C.sub.2H.sub.3NaO.sub.2), 1 g/L of ammonium citrate (C.sub.6H.sub.17N.sub.30.sub.7), 2 g/L of K.sub.2HPO.sub.4, 0.25 g/L of MgSO.sub.4.Math.7H.sub.2O, 10 mL of a 100 trace element solution; wherein the formula of the 100 trace element solution is: 2.25 g/L of FeSO.sub.4, 0.75 g/L of ZnSO.sub.4, and 0.38 g/L of MnSO.sub.4.
Example 1: Construction of a L-valine Producing Strain Starting From a 2,3-butanediol Producing Strain Klebsiella oxytoca PDL-0
[0098] The starting strain Klebsiella oxytoca PDL-0 was a 2,3-butanediol producing strain obtained by the laboratory of the applicant in the early stage of screening. Its genome had been sequenced and it had been deposited in the China Center for Type Culture Collection on Apr. 15, 2016 with the deposit number: CCTCC NO. M 2016184. K. oxytoca PDL-0 was a gram-negative bacterium that grown aerobically or facultatively anaerobically, with an optimal culture temperature of 371 C. K. oxytoca PDL-0 had a positive VP (Voges-Proskauer) reaction and has the ability to metabolize a citrate for growth. The Klebsiella oxytoca had a broad substrate spectrum and could utilize monosaccharides such as glucose, xylose, and galactose as the sole carbon source for growth. It could also metabolize polysaccharides such as cellobiose, cellotriose, and lactose etc. additionally.
1.1 Knockout of Byproduct Synthesis-Related Genes
[0099] Byproduct synthesis-related genes pox, pta, ldhD, frdA, and pflB were knocked out from the starting strain Klebsiella oxytoca PDL-0.
1.1.1 Knockout of the Pyruvate Oxidase Gene Pox
[0100] The pyruvate oxidase gene pox had a sequence length of 1,719 bases, and a nucleotide sequence as shown in SEQ ID NO.1.
[0101] Construction of knock-out vector: the genomic DNA of Klebsiella oxytoca PDL-0 was prepared by conventional methods. The process referred to the method for small-scale preparation of bacterial genomes in the Concise Guide to Molecular Biology published by China Science Publishing & Media Ltd., the genomic DNA of Klebsiella oxytoca PDL-0 was extracted; and the upstream and downstream homology arms of the pox gene were amplified by PCR utilizing the synthetic primers pox1-f and pox1-r and pox2-f and pox2-r. The obtained upstream and downstream homology arms were used as templates for recombination, and then the recombinant fragment was amplified by PCR utilizing the primers pox1-f and pox2-r to obtain a truncated fragment of pox, which contained enzyme cleavage sites of EcoRI and BamHI at both ends.
[0102] The truncated recombinant fragment of pox and the suicide plasmid pKR6K.sub.Cm were subjected to double enzyme digestion with restriction endonucleases EcoRI and BamHI, respectively. The enzyme-cleaved products were recovered by a nucleic acid gel and ligated with T.sub.4DNA ligase to obtain a knockout plasmid pKR6K.sub.Cm-pox.
[0103] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00001 pox1-f: (SEQIDNO.36) 5-CCGGAATTCACAGACCGTGGCGGCATACA-3(EcoRI) pox1-r: (SEQIDNO.37) 5-CGCTTACCGTTCATCTGCAAAGCTGGGCCAGCTTTTTCAG-3 pox2-f: (SEQIDNO.38) 5-CTGAAAAAGCTGGCCCAGCTTTGCAGATGAACGGTAAGCG-3 pox2-r: (SEQIDNO.39) 5-CGCGGATCCTTACCTTAGCCAGTTAGTT-3(BamHI)
[0104] Gene knockout step: Escherichia coli S17-1 pir carrying a knockout plasmid and Klebsiella oxytoca PDL-0 were inoculated and cultured at 37 C. overnight. The aforementioned strains were transferred and cultured at 37 C. until the OD.sub.620nm nm was about 0.6-0.8. 5 mL of a Escherichia coli bacterial solution and 1 mL of a Klebsiella oxytoca bacterial solution were collected respectively, and centrifuged at 6,500 rpm for 3 minutes to collect the bacteria. The bacteria were washed twice with 0.85% normal saline, the two kinds of bacteria were mixed with 100 L of normal saline, and added dropwise onto an LB plate. The LB plate was placed in a 37 C. incubator for culture overnight. After the biofilm was rinsed with 0.85% normal saline for collection of cells, the rinsing solution was centrifuged at 6,500 rpm for 3 minutes to collect the bacteria, the bacteria was washed twice with 0.85% normal saline, diluted by 4-10 times, spread on a M9 solid plates containing 2% citrate supplemented with chloramphenicol, and cultured at 37 C. for 36-48 hours. The grown single colonies were picked and cultured in an LB medium containing chloramphenicol at 37 C. PCR verification was performed on the bacterial solution by utilizing the upstream and downstream primers to obtain correct single-exchange target bacteria from which both long fragments and short fragments could be obtained through PCR at the same time.
[0105] The correct single-exchange target strain was transferred into a resistance-free LB medium, cultured at 37 C. overnight, then transferred into an LB medium containing 15% sucrose and cultured at 37 C. for 10-12 hours. Two generations of transfer were performed, and gradient dilutions of the strain were spread on an LB solid medium containing 15% sucrose and cultured at 37 C. overnight. The grown single colonies were picked and placed in an LB medium. PCR verification was performed on the bacterial solution by utilizing the upstream and downstream primers. The genomes of the single colonies from which only short fragments were amplified were extracted, and subjected to genome temperature gradient PCR verification with the aforementioned primers. Those with all short bands were the correct double-exchange target bacteria.
1.1.2 Knockout of the Phosphotransacetylase Gene pta
[0106] The phosphotransacetylase gene pta had a sequence length of 2,199 bases, and a nucleotide sequence as shown in SEQ ID NO.2.
[0107] The steps of constructing a knockout vector for the gene pta and knocking out the gene referred to the knockout steps of the gene pox in the step 1.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00002 pta1-f: (SEQIDNO.40) 5-CCGGAATTCACTGGCGGTAACGAAAGAGGATA-3(EcoRI) pta1-r: (SEQIDNO.41) 5-TAAACCTGTTCCGGCAGCACGAAGCTGCTGCGAGTCAG-3 pta2-f: (SEQIDNO.42) 5-CTGACTCGCAGCAGCTTCGTGCTGCCGGAACAGGTTTA-3 pta2-r: (SEQIDNO.43) 5-TGCTCTAGATTATGCTTGCTGCTGGGACGAC-3(XbaI)
1.1.3 Knockout of the Fumarate Reductase Catalytic Subunit Gene frdA
[0108] The fumarate reductase catalytic subunit gene frdA had a sequence length of 1,668 bases, and a nucleotide sequence as shown in SEQ ID NO.3.
[0109] The steps of constructing a knockout vector for the gene frdA and knocking out the gene referred to the knockout steps of the gene pox in the step 1.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00003 frdA1-f: (SEQIDNO.44) 5-CCGGAATTCATACCGTTGCTGCTGAAGGG-3(EcoRI) frdA1-r: (SEQIDNO.45) 5-CTTCGCCCAGTTCTCGTTACTGGTATTGTAGCGATACACG-3 frdA2-f: (SEQIDNO.46) 5-CGTGTATCGCTACAATACCAGTAACGAGAACTGGGCGAAG-3 frdA2-r: (SEQIDNO.47) 5-CGCGGATCCTCAGCCATTCGTCGTCTC-3(BamHI)
1.1.4 Knockout of D-Lactate Dehydrogenase Gene ldhD
[0110] The D-lactate dehydrogenase gene ldhD had a sequence length of 990 bases, and a nucleotide sequence as shown in SEQ ID NO.4.
[0111] The steps of constructing a knockout vector for the gene ldhD and knocking out the gene referred to the knockout steps of the gene pox in the step 1.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00004 ldhD1-f: (SEQIDNO.48) 5-CCGGAATTCTACGAAACAGTACGACAAG-3(EcoRI) ldhD1-r: (SEQIDNO.49) 5-GAATCGATGAGCGCGCCGCACCGCTTCCGGCGAGTAGGC-3 ldhD2-f: (SEQIDNO.50) 5-GAATCGATGAGCGCGCCGCACCGCTTCCGGCGAGTAGGC-3 ldhD2-r: (SEQIDNO.51) 5-CGCGGATCCTGACGCAGGTTGTCGAGGGT-3(BamHI)
1.1.5 Knockout of the Pyruvate Formate Lyase Gene pflB
[0112] The pyruvate formate lyase gene pflB had a sequence length of 2,283 bases, and a nucleotide sequence as shown in SEQ ID NO.5.
[0113] The steps of constructing a knockout vector for the gene pflB and knocking out the gene referred to the knockout steps of the gene pox in the step 1.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00005 pflB1-f: (SEQIDNO.52) 5-CCGGAATTCTTAATGAAAAGTTAGCCACA-3(EcoRI) pflB1-r: (SEQIDNO.53) 5-CGCGAGAGTCGTTGTTACCAGACGGTAGTCACCGATGATA-3 pflB2-f: (SEQIDNO.54) 5-TATCATCGGTGACTACCGTCTGGTAACAACGACTCTCGCG-3 pflB2-r: (SEQIDNO.55) 5-TGCTCTAGATTACATGGTCTGAGTGAAGG-3(Xbal)
[0114] Finally, the recombinant Klebsiella oxytoca in which the byproduct-related genes had been correctly knocked out was named Klebsiella oxytoca VKO-0, with the genotype of K. oxytoca PDL-0 pox pta frdA ldhD pflB.
1.2 Redirection of Metabolic Flux From 2,3-butanediol Synthesis to L-valine Production
1.2.1 Insertion of the Dihydroxyacid Dehydratase Gene puDHT Derived From Paralcaligenes ureilyticus Into the Site of Lactate Dehydrogenase Gene ldhD
[0115] The dihydroxyacid dehydratase gene puDHT had a sequence length of 1,728 bases, and a nucleotide sequence as shown in SEQ ID NO.6. The lactate dehydrogenase gene ldhD had a sequence length of 990 bases, and a nucleotide sequence as shown in SEQ ID NO.4.
[0116] Construction of gene replacement vector: the genomic DNA of Klebsiella oxytoca PDL-0 was prepared by conventional methods. The process referred to the method for small-scale preparation of bacterial genomes in the Concise Guide to Molecular Biology published by China Science Publishing & Media Ltd., and the genomic DNA of Klebsiella oxytoca PDL-0 was extracted. By using the genomic DNA of Klebsiella oxytoca PDL-0 as a template and utilizing primers ldhD::puDHT1-f and ldhD::puDHT1-r and ldhD::puDHT3-f and ldhD::puDHT3-r, PCR amplification was conducted to replace upstream and downstream homology arms of the gene ldhD. By using the dihydroxyacid dehydratase gene puDHT in the P. ureilyticus obtained through whole gene synthesis as a template and utilizing the primers ldhD::puDHT2-f and ldhD::puDHT2-r, the middle segment replacement gene puDHT was obtained through amplification. The obtained upstream homology arm and the gene puDHT were used as templates for recombinant PCR, and then the obtained recombinant fragment and the downstream homology arm were used for recombinant PCR. Thereafter, the recombinant fragment was then amplified by PCR utilizing primers ldhD::puDHT1-f and ldhD::puDHT3-r to obtain a gene replacement fragment of ldhD:puDHT, which contained enzyme cleavage sites of EcoRI and BamHI at both ends.
[0117] The suicide plasmid pKR6K.sub.Cm was subjected to double enzyme digestion with restriction endonucleases EcoRI and BamHI. The enzyme-cleaved products were recovered by a nucleic acid gel and ligated with the gene replacement fragment using T5 exonuclease to obtain a gene replacement plasmid pKR6K.sub.cm-ldhD::puDHT.
[0118] The operation steps of inserting the dihydroxyacid dehydratase gene puDHT derived from P. ureilyticus into the site of the lactate dehydrogenase gene ldhD referred to the step of knocking out the gene pox in the step 1.1.1 of Example 1.1.
[0119] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00006 ldhD::puDHT1-f: (SEQIDNO.56) 5-AACAGCTATGACATGATTACGAATTCGCCGCTATTGTGGC ACGTTCGACC-3(EcoRI) ldhD::puDHT1-r: (SEQIDNO.57) 5-GCTTTTCTTTGTCACTCATAAGACTTTTCTCCAGTGAT-3 ldhD::puDHT2-f: (SEQIDNO.58) 5-ATCACTGGAGAAAAGTCTTATGAGTGACAAAGAAAAGC-3 ldhD::puDHT2-r: (SEQIDNO.59) 5-GCACAAAAGGGAAAGGAATATTAGTGATTGTCTTTGGGTA-3 ldhD:puDHT3-f: (SEQIDNO.60) 5-TACCCAAAGACAATCACTAATATTCCTTTCCCTTTTGTGC-3 ldhD::puDHT3-r: (SEQIDNO.61) 5-GCCTGCAGGTCGACTCTAGAGGATCCGTTACTGTCGGCG TGTAGTAGCAAT-3(BamHI)
1.2.2 Replacement of the Ethanol Dehydrogenase Gene adhE With the L-leucine Dehydrogenase Gene bcd Derived From Bacillus subtilis 168
[0120] The L-leucine dehydrogenase gene bcd had a sequence length of 1,095 bases, and a nucleotide sequence as shown in SEQ ID NO.7. The ethanol dehydrogenase gene adhE had a sequence length of 2,676 bases, and a nucleotide sequence as shown in SEQ ID NO.8.
[0121] The steps for constructing and operating a gene replacement vector for replacing the ethanol dehydrogenase gene adhE with the L-leucine dehydrogenase gene bcd derived from Bacillus subtilis 168 referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of this example.
[0122] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00007 adhE::bcd1-f: (SEQIDNO.62) 5-AACAGCTATGACATGATTACGAATTCTCAAACAATGATTGAA TCACAG-3(EcoRI) adhE::bcd1-r: (SEQIDNO.63) 5-ATATATTTAAAAAGTTCCATAATGCTCTCCTGATAATGTT-3 adhE::bcd2-f: (SEQIDNO.64) 5-AACATTATCAGGAGAGCATTATGGAACTTTTTAAATATAT-3 adhE::bcd2-r: (SEQIDNO.65) 5-CTGACTTTACGGCTGTGGAATTAACGTCTGCTTAATACAC-3 adhE::bcd3-f: (SEQIDNO.66) 5-GTGTATTAAGCAGACGTTAATTCCACAGCCGTAAAGTCAG-3 adhE::bcd3-r: (SEQIDNO.67) 5-GCCTGCAGGTCGACTCTAGAGGATCCAGGTGGTGGACCAG CTCGATATTCC-3(BamHI)
1.2.3 Replacement of the -acetolactate Decarboxylase Gene budA With the Acetohydroxyacid Isomeroreductase Cofactor Preference Mutant Protein Coding Gene ilvC.sup.M(L67E,R68F,K75E) Derived From Escherichia coli W3110
[0123] The acetohydroxyacid isomeroreductase cofactor preference mutant protein coding gene ilvC.sup.M(L67E,R68F,K75E) had a sequence length of 1,476 bases, and a nucleotide sequence as shown in SEQ ID NO.9. The -acetolactate decarboxylase gene budA had a sequence length of 780 bases, and a nucleotide sequence as shown in SEQ ID NO.10.
[0124] Construction of gene replacement vector: the genomic DNA of Klebsiella oxytoca PDL-0 was prepared by conventional methods. The process referred to the method for small-scale preparation of bacterial genomes in the Concise Guide to Molecular Biology. published by China Science Publishing & Media Ltd., and the genomic DNA of Klebsiella oxytoca PDL-0 was extracted. The upstream and downstream homology arms of the replacement gene ilvC.sup.M(L67E,R68F,K75E) were obtained through amplification by PCR using the genomic DNA of Klebsiella oxytoca PDL-0 as a template and utilizing primers budA::ilvC.sup.M(L67E,R68F,K75E)1-f and budA::ilvC.sup.M(L67E,R68F,K75E)1-r and budA::ilvC.sup.M(L67E,R68F,K75E)4-f and budA::ilvC.sup.M(L67E,R68F,K75E)4-r. By using the genome of Escherichia coli W3110 as a template, the upstream sequence of a mutation site of the middle segment replacement gene ilvC.sup.M(L67E,R68F,K75E) was obtained through amplification utilizing primers budA::ilvC.sup.M(L67E,R68F,K75E)2-f and budA::ilvC.sup.M(L67E,R68F,K75E)2-r, the downstream sequence of a mutation site of the middle segment replacement gene ilvC.sup.M(L67E,R68F,K75E) was obtained through amplification utilizing primers budA::ilvC.sup.M(L67E,R68F,K75E)3-f and budA::ilvC.sup.M(L67E,R68F,K75E)3-r, and the upstream and downstream sequences were subjected to recombinant PCR to obtain the sequence of the gene ilvC.sup.M(L67E,R68F,K75E). The obtained upstream homology arm and the gene ilvC.sup.M(L67E,R68F,K75E) were used as templates for recombinant PCR, and then the obtained recombinant fragment and the downstream homology arm were used for recombinant PCR. Thereafter, the recombinant fragment was then amplified by PCR utilizing primers budA::ilvC.sup.M(L67E,R68F,K75E)1-f and budA::ilvC.sup.M(L67E,R68F,K75E)4-r to obtain a gene replacement fragment of budA::ilvC.sup.M(L67E,R68F,K75E), which contained enzyme cleavage sites of EcoRI and BamHI at both ends.
[0125] The suicide plasmid pKR6K.sub.Cm was subjected to double enzyme digestion with restriction endonucleases EcoRI and BamHI. The enzyme-cleaved products were recovered by a nucleic acid gel and ligated with the gene replacement fragment using T5 exonuclease to obtain a gene replacement plasmid pKR6K.sub.Cm-budA::ilvC.sup.M(L67E,R68F,K75E).
[0126] The operation steps for replacing the -acetolactate decarboxylase gene budA with the acetohydroxyacid isomeroreductase cofactor preference mutant protein coding gene ilvC.sup.M(L67E,R68F,K75E) derived from Escherichia coli W3110 referred to the operation steps for inserting the gene puDHT into the site of the gene ldhD in step 1.2.1 of this example.
[0127] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00008 budA::ilvC.sup.M(L67E,R68F,K75E)1-f: (SEQIDNO.68) 5-AACAGCTATGACATGATTACGAATTCTCGCCAT ATTGCCCTCGACCTG-3(EcoRI) budA::ilvC.sup.M(L67E,R68F,K75E)1-r: (SEQIDNO.69) 5-GTATTGAAGTAGTTAGCCATTACCCGCTTCCTC GTTCAAC-3 budA::ilvC.sup.M(L67E,R68F,K75E)2-f: (SEQIDNO.70) 5-GTTGAACGAGGAAGCGGGTAATGGCTAACTAC TTCAATAC-3 budA::ilvC.sup.M(L67E,R68F,K75E)2-r: (SEQIDNO.71) 5-GCTTTACGCCAGGACGCGCGCTCCTCGGCAAT CGCTTCTTTAAACTCAGCGTAGGAGATATCGAGAC-3 budA::ilvC.sup.M(L67E,R68F,K75E)3-f: (SEQIDNO.72) 5-GTCTCGATATCTCCTACGCTGAGTTTAAAGAAG CGATTGCCGAGGAGCGCGCGTCCTGGCGTAAAGC-3 budA::ilvC.sup.M(L67E,R68F,K75E)3-r: (SEQIDNO.73) 5-ATCCACGAGAATCTCCTTAACCCGCAACAGCA ATAC-3 budA::ilvC.sup.M(L67E,R68F,K75E)4-f: (SEQIDNO.74) 5-GTATTGCTGTTGCGGGTTAAGGAGATTCTCGTG GAT-3 budA::ilvC.sup.M(L67E,R68F,K75E)4-r: (SEQIDNO.75) 5-GCCTGCAGGTCGACTCTAGAGGATCCAGGCGC TGCCGGGGCGTCCCTGCT-3(BamHI)
[0128] The final resulting recombinant Klebsiella oxytoca was named Klebsiella oxytoca VKO-3 with the genotype of Klebsiella oxytoca PDL-0 pox pta frdA pflB ldhD::puDHT adhE::bcd budA::ilvC.sup.M(L67E,R68F,K75E).
1.3 Introduction of the Branched-Chain Amino Acid Transporter Gene brnFE Derived From Corynebacterium glutamicum ATCC13869 Into the Site of the Pyruvate Formate Lyase Gene pflB to Enhance L-valine Efflux
[0129] The branched-chain amino acid transporter gene brnFE had a sequence length of 1,079 bases, and a nucleotide sequence as shown in SEQ ID NO.11. The pyruvate formate lyase gene pflB had a sequence length of 2,283 bases, and a nucleotide sequence as shown in SEQ ID NO.5.
[0130] The steps for constructing and operating a gene replacement vector for inserting the branched-chain amino acid transporter gene brnFE derived from Corynebacterium glutamicum ATCC13869 into the site of the pyruvate formate lyase gene pflB referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.2.
[0131] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00009 pflB::brnFE1-f: (SEQIDNO.76) 5-AATTCGAGCTCGGTACCCGGGGATCCAATATATGACTGCCA ACGGTCAATG-3(BamHI) pflB::brnFE1-r: (SEQIDNO.77) 5-ATCTCTTGCGTTTTTTGCACGTAACACCTACCTTCTTAA-3 pflB::brnFE2-f: (SEQIDNO.78) 5-TTAAGAAGGTAGGTGTTACGTGCAAAAAACGCAAGAGAT-3 pflB::brnFE2-r: (SEQIDNO.79) 5-TACGATTTCAGTCAATACCATTAGAAAAGATTCACCAGTC-3 pflB::brnFE3-f: (SEQIDNO.80) 5-GACTGGTGAATCTTTTCTAATGGTATTGACTGAAATCGTA-3 pflB::brnFE3-r: (SEQIDNO.81) 5-GCCTGCAGGTCGACTCTAGAGGATCCACCTTCTTTCTTAC AGGCGCGGAAC-3(BamHI)
[0132] The final resulting recombinant Klebsiella oxytoca was named Klebsiella oxytoca VKO-4 with the genotype of Klebsiella oxytoca PDL-0 pox pta frdA ldhD::puDHT adhE::bcd budA::ilvC.sup.M(L67E,R68F,K75E) pflB::brnFE.
1.4 Introduction of the -acetolactate Synthase Gene alsS Derived From Bacillus subtilis 168 to Replace the 2,3-butanediol Dehydrogenase Gene budC to Improve the -acetolactate Synthesis Efficiency and Inhibit 2,3-butanediol Synthesis
[0133] The -acetolactate synthase gene alsS had a sequence length of 1,713 bases, and a nucleotide sequence as shown in SEQ ID NO.12. The 2,3-butanediol dehydrogenase gene budC had a sequence length of 771 bases, and a nucleotide sequence as shown in SEQ ID NO.13.
[0134] The steps for constructing and operating a gene replacement vector for replacing the 2,3-butanediol dehydrogenase gene budC with the -acetolactate synthase gene alsS derived from Bacillus subtilis 168 referred to the operation steps for inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.2.
[0135] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00010 budC::alsS1-f: (SEQIDNO.82) 5-GAGCTCGGTACCCGGGGATCCGTTTGCCCTTCATCCGCTGC GCATC-3(BamHI) budC::alsS1-r: (SEQIDNO.83) 5-TCTTTTGTTGCTTTTGTCAATGCTGGATTCCTTCTGTAGT-3 budC::alsS2-f: (SEQIDNO.84) 5-ACTACAGAAGGAATCCAGCATTGACAAAAGCAACAAAAGA-3 budC::alsS2-r: (SEQIDNO.85) 5-TGTCAGAGCTTATTTATTACTAGAGAGCTTTCGTTTTCA-3 budC::alsS3-f: (SEQIDNO.86) 5-TGAAAACGAAAGCTCTCTAGTAATAAATAAGCTCTGACA-3 budC::alsS3-r: (SEQIDNO.87) 5-CAGGTCGACTCTAGAGGATCCGCGGGTCTTTTTGCGCGAGC TGATC-3(BamHI)
[0136] The final resulting recombinant Klebsiella oxytoca was named Klebsiella oxytoca VKO-5 with the genotype of Klebsiella oxytoca PDL-0 pox pta frdA ldhD::puDHT adhE::bcd budA::ilvC.sup.M(L67E,R68F,K75E) pflB::brnFE budC::alsS.
1.5 Increasing the Number of Copies of Acetohydroxyacid Isomeroreductase to Improve L-valine Synthesis
1.5.1 Replacement of the Glycerol Dehydrogenase Gene gldA With the Acetohydroxyacid Isomeroreductase Cofactor Preference Mutant Protein Coding Gene ilvC.sup.M(L67E,R68F,K75E) Derived From Escherichia coli W3110
[0137] The acetohydroxyacid isomeroreductase cofactor preference mutant protein coding gene ilvC.sup.M(L67E,R68F,K75E) had a sequence length of 1,476 bases, and a nucleotide sequence as shown in SEQ ID NO.9. The glycerol dehydrogenase gene gldA had a sequence length of 1,104 bases, and a nucleotide sequence as shown in SEQ ID NO.15.
[0138] The steps for constructing and operating a gene replacement vector for replacing the glycerol dehydrogenase gene gldA with the acetohydroxyacid isomeroreductase cofactor preference mutant protein coding gene ilvC.sup.M(L67E,R68F,K75E) derived from Escherichia coli W3110 referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.2.
[0139] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00011 gldA::ilvC.sup.M(L67E,R68F,K75E)1-f: (SEQIDNO.88) 5-GAGCTCGGTACCCGGGGATCCGCCGTATTCTTT CCTCAACGACACT-3(BamHI) gldA::ilvC.sup.M(L67E,R68F,K75E)1-r: (SEQIDNO.89) 5-GTATTGAAGTAGTTAGCCATTTCTATTCCTCCTG GATGACCGTG-3 gldA::ilvC.sup.M(L67E,R68F,K75E)2-f: (SEQIDNO.90) 5-CACGGTCATCCAGGAGGAATAGAAATGGCTAA CTACTTCAATAC-3 gldA::ilvCM.sup.(L67E,R68F,K75E)2-r: (SEQIDNO.91) 5-CTGCTGGCGGGTATGTCGCGAGGGGTTAACCC GCAACAGCAATAC-3 gldA::ilvC.sup.M(L67E,R68F,K75E)3-f: (SEQIDNO.92) 5-GTATTGCTGTTGCGGGTTAACCCCTCGCGACAT ACCCGCCAGCAG-3 gldA::ilvC.sup.M(L67E,R68F,K75E)3-r: (SEQIDNO.93) 5-CAGGTCGACTCTAGAGGATCCATAACGAGGTC AAGGTCTGCCAGGC-3(BamHI)
[0140] The final resulting recombinant Klebsiella oxytoca was named Klebsiella oxytoca VKO-6 with the genotype of Klebsiella oxytoca PDL-0 pox pta frdA ldhD::puDHT adhE::bcd budA::ilvC.sup.M(L67E,R68F,K75E) pflB::brnFE budC::alsS gldA::ilvC.sup.M(L67E,R68F,K75E).
1.5.2 Replacement of the Glycerol Dehydrogenase Gene gldA With the Acetohydroxyacid Isomeroreductase Coding Gene ilvC Derived From Escherichia coli W3110
[0141] The acetohydroxyacid isomeroreductase gene ilvC had a sequence length of 1,476 bases, and a nucleotide sequence as shown in SEQ ID NO.14.
[0142] The steps for constructing and operating a gene replacement vector for replacing the glycerol dehydrogenase gene gldA with the acetohydroxyacid isomeroreductase gene ilvC derived from Escherichia coli W3110 referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.2.
[0143] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00012 gldA::ilvC1-f: (SEQIDNO.94) 5-GAGCTCGGTACCCGGGGATCCGCCGTATTCTTTCCTCAACG ACACT-3(BamHI) gldA::ilvC1-r: (SEQIDNO.95) 5-GTATTGAAGTAGTTAGCCATTTCTATTCCTCCTGGATGACCG TG-3 gldA::ilvC2-f: (SEQIDNO.96) 5-CACGGTCATCCAGGAGGAATAGAAATGGCTAACTACTTCAA TAC-3 gldA::ilvC2-r: (SEQIDNO.97) 5-CTGCTGGCGGGTATGTCGCGAGGGGTTAACCCGCAACAGCA ATAC-3 gldA::ilvC3-f: (SEQIDNO.98) 5-GTATTGCTGTTGCGGGTTAACCCCTCGCGACATACCCGCCAG CAG-3 gldA::ilvC3-r: (SEQIDNO.99) 5-CAGGTCGACTCTAGAGGATCCATAACGAGGTCAAGGTCTGC CAGGC-3(BamHI)
[0144] The final resulting recombinant Klebsiella oxytoca was named Klebsiella oxytoca VKO-7 with the genotype of Klebsiella oxytoca PDL-0 pox pta frdA ldhD::puDHT adhE::bcd budA::ilvC.sup.M(L67E,R68F,K75E) pflB::brnFE budC::alsS gldA::ilvC.
1.6 Optimizing the Source of Dihydroxy Acid Dehydratase to Improve Synthesis of L-valine
1.6.1 Replacement of the Dihydroxyacid Dehydratase Gene puDHT Derived From P. ureilyticus With the Dihydroxyacid Dehydratase Gene dhal Derived From Sulfolobus solfataricus
[0145] The dihydroxyacid dehydratase gene dhaD had a sequence length of 1,677 bases, and a nucleotide sequence as shown in SEQ ID NO.16.
[0146] The steps for constructing and operating a gene replacement vector for replacing the dihydroxyacid dehydratase gene puDHT derived from P. ureilyticus with the dihydroxyacid dehydratase gene dhaD derived from Sulfolobus solfataricus referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.2.
[0147] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00013 puTHD::dhaD1-f: (SEQIDNO.100) 5-AACAGCTATGACATGATTACGAATTCCTGTGAGTTAAAG TTTCCATCCCG-3(EcoRI) puTHD::dhaD1-r: (SEQIDNO.101) 5-GAGTTCAGTTTTGCCGGCATAAGACTTTTCTCCAGTGAT A-3 puTHD::dhaD2-f: (SEQIDNO.102) 5-TATCACTGGAGAAAAGTCTTATGCCGGCAAAACTGAAC TC-3 puTHD::dhaD2-r: (SEQIDNO.103) 5-GCACAAAAGGGAAAGGAATATTATGCCGGACGCGTAAC CGCGC-3 puTHD::dhaD3-f: (SEQIDNO.104) 5-GCGCGGTTACGCGTCCGGCATAATATTCCTTTCCCTTTTG TGC-3 puTHD::dhaD3-r: (SEQIDNO.105) 5-GCCTGCAGGTCGACTCTAGAGGATCCTGTAGTAGCAATG ATGAACCTGTTC-3(BamHI)
[0148] The final resulting recombinant Klebsiella oxytoca was named Klebsiella oxytoca VKO-8 with the genotype of Klebsiella oxytoca PDL-0 pox pta frdA ldhD::dhaD adhE::bcd budA::ilvC.sup.M(L67E,R68F,K75E) pflB::brnFE budC::alsS gldA::ilvC.
1.6.2 Replacement of the Dihydroxyacid Dehydratase Gene puDHT Derived From P. ureilyticus With the Dihydroxyacid Dehydratase Gene ilvD Derived From Escherichia coli W3110
[0149] The dihydroxyacid dehydratase gene ilvD had a sequence length of 1,851 bases, and a nucleotide sequence as shown in SEQ ID NO.17.
[0150] The steps for constructing and operating a gene replacement vector for replacing the dihydroxyacid dehydratase gene puDHT derived from P. ureilyticus with the dihydroxyacid dehydratase gene ilvD derived from Escherichia coli W3110 referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.2.
[0151] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00014 puTHD::ilvD1-f: (SEQIDNO.106) 5-AACAGCTATGACATGATTACGAATTCGGCACGTTCGACCT GTGAGTTAAA-3(EcoRI) puTHD::ilvD1-r: (SEQIDNO.107) 5-GCGGAACGGTACTTAGGCATAAGACTTTTCTCCAGTGATA- 3 puTHD::ilvD2-f: (SEQIDNO.108) 5-TATCACTGGAGAAAAGTCTTATGCCTAAGTACCGTTCCGC- 3 puTHD::ilvD2-r: (SEQIDNO.109) 5-GCACAAAAGGGAAAGGAATATTAACCCCCCAGTTTCGA-3 puTHD::ilvD3-f: (SEQIDNO.110) 5-TCGAAACTGGGGGGTTAATATTCCTTTCCCTTTTGTGC-3 puTHD:ilvD3-r: (SEQIDNO.111) 5-GCCTGCAGGTCGACTCTAGAGGATCCTCGGCGTGTAGTA GCAATGATGAAC-3(BamHI)
[0152] The final resulting recombinant Klebsiella oxytoca obtained by construction was named Klebsiella oxytoca VKO-9 with the genotype of Klebsiella oxytoca PDL-0 pox pta frdA ldhD::ilvD adhE::bcd budA::ilvC.sup.M(L67E,R68F,K75E) pflB::brnFE budC::alsS gldA:ilvC.
Example 2: Batch Fermentation of L-valine Using Glucose as a Substrate by Recombinant Klebsiella oxytoca
2.1 Batch Fermentation of L-valine Using Glucose as a Substrate by Recombinant Klebsiella oxytoca VKO-3 [0153] (1) Plate culture: the recombinant strain Klebsiella oxytoca VKO-3 was streaked onto an LB medium containing agar at a mass-volume ratio of 1.6-1.8%, and cultured at 371 C. for 101 h; [0154] (2) Seed culture: under sterile conditions, a single colony was picked from the plate in the step (1) with a tip of a sterile pipette, then inoculated into 5 mL of an LB liquid medium, and cultured with oscillating in a shaker at 371 C. for 101 hours; and then inoculated into 100 mL of an LB liquid medium at an inoculation amount of 1% (v/v) and cultured with oscillating in a shaker at 371 C. for 101 hours; [0155] (3) 1 L fermentation tank culture: under sterile conditions, the bacterial solution obtained in the step (2) was taken and inoculated into a fermentation medium containing 50-60 g/L of glucose at an inoculation amount of 10% (v/v). The fermentation conditions were as follows: a liquid loading volume of 0.8 L, a culture temperature of 371 C., a culture manner of stirring culture, a stirring rotation speed of 50050 revolutions per minute, a ventilation volume of 1.60.1 vvm, and a pH maintained at 6.80.1 by adjusting with ammonia water, and among the fermentations, samples were taken every 4 hours to detect OD.sub.620nm and the concentration of the glucose in the fermentation sample; and at the same time the fermentation sample was subjected to high performance liquid chromatography analysis to determine the concentration of L-valine in the fermentation broth. When the glucose was consumed completely, the fermentation was stopped.
[0156] In the aforementioned method, a method for detecting the substrate glucose was: appropriately diluting the sample and then determining the diluted sample using a biosensor analyzer SBA-40D (available from Biology Institute of Shandong Academy of Sciences). The determination principle was to utilize the immobilized glucose oxidase membrane to specifically determine the glucose content.
[0157] In the aforementioned method, a method for detecting the fermentation product L-valine was that: [0158] the sample was diluted to an appropriate concentration, and centrifuged at 12,000 rpm for 1 min, and 400 L of the supernatant was taken, added with 200 L of a 0.1 M PITC-acetonitrile solution and 200 L of a 1 M triethylamine-acetonitrile solution, mixed well, and allowed to stand at room temperature with protection from light for 1 h. Then, the mixture was added with 800 L of n-hexane, vortexed under shaking for 1 min, and then allowed to stand at room temperature with protection from light for 10 min. The liquid at the lower layer was taken, filtered through a 0.22 m filter membrane, and detected for L-valine through a liquid phase. The specific liquid phase detection conditions were as follows:
[0159] The model of the used liquid chromatograph was Agilent 1100, and the model of the chromatographic column was ZORBAX SB-C18 (2504.6 mm, Agilent, USA); the detector was a diode array (UV-Vis) detector; the detection wavelength was 254 nm; the mobile phase A was a 7.6% NaAc-7% acetonitrile aqueous solution (pH 6.5), and the mobile phase B was a 80% acetonitrile aqueous solution. Different proportions of the mobile phases A and B were used for gradient elution, specifically as follows: 0-7% of B for 0-11 min; 7-12% of B for 11-13.9 min; 12-15% of B for 13.9-14 min; 15-34% of B for 14-29 min; 100% of B for 29-37 min; 0% of B for 37-45 min; a flow rate of 0.6 mL/min; a column temperature of 40 C.; an injection volume of 5 L; and an analysis time of 45 min.
[0160] The results showed that the recombinant strain K. oxytoca VKO-3 was cultured for 28 h, which consumed 60.0 g/L of glucose, and the concentration of L-valine reached 6.39 g/L, and the yield of L-valine reached 0.107 g/g.
[0161] The formula of the LB medium described in the aforementioned steps (1)-(2) was: 10 g/L of peptone; 5 g/L of yeast powder; 10 g/L of NaCl, at pH 7.0; sterilized at 121 C. for 20 minutes.
[0162] The formula of the fermentation medium described in the aforementioned step (3) was: 5 g/L of yeast powder, 10 g/L of K.sub.2HPO.sub.4, 2 g/L of KH.sub.2PO.sub.4, 10 g/L of (NH.sub.4).sub.2SO.sub.4, 0.1 g/L of MgSO.sub.4.Math.7H.sub.2O, 1 mL of a trace element solution (1,000), with the pH of the medium being adjusted to 6.8, and the medium being sterilized at 121 C. for 20 minutes. The formula of the trace element solution (1,000) was: 3.2 g/L of CaCl.sub.2.Math.2H.sub.2O, 3.8 g/L of ZnCl.sub.2, 30 g/L of FeCl.sub.3.Math.2H.sub.2O, 11.14 g/L of MnCl.sub.2.Math.2H.sub.2O, 0.96 g/L of CuCl.sub.2.Math.2H.sub.2O, 2.64 g/L of CoCl.sub.2.Math.2H.sub.2O, 0.35 g/L of H.sub.3BO.sub.3, and 0.024 g/L of NaMoO.sub.4.Math.2H.sub.2O.
2.2 Batch Fermentation of L-valine Using Glucose as a Substrate by Recombinant Klebsiella oxytoca VKO-4
[0163] The method and operation steps for batch fermentation of L-valine using glucose as a substrate by a recombinant strain Klebsiella oxytoca VKO-4 referred to the method and operation steps in the step 2.1 of this example.
[0164] The results showed that the recombinant strain Klebsiella oxytoca VKO-4 was cultured for 20 h, which consumed 60.0 g/L of glucose, and the concentration of L-valine reached 11.0 g/L, and the yield of L-valine reached 0.183 g/g.
2.3 Batch Fermentation of L-valine Using Glucose as a Substrate by Recombinant Klebsiella oxytoca VKO-5
[0165] The method and operation steps for batch fermentation of L-valine using glucose as a substrate by a recombinant strain Klebsiella oxytoca VKO-5 referred to the method and operation steps in the step 2.1 of this example.
[0166] The results showed that the recombinant strain Klebsiella oxytoca VKO-5 was cultured for 24 h, which consumed 60.0 g/L of glucose, and the concentration of L-valine reached 10.6 g/L, and the yield of L-valine reached 0.177 g/g.
2.4 Batch Fermentation of L-valine Using Glucose as a Substrate by Recombinant Klebsiella oxytoca VKO-6
[0167] The method and operation steps for batch fermentation of L-valine using glucose as a substrate by a recombinant strain Klebsiella oxytoca VKO-6 referred to the method and operation steps in the step 2.1 of this example.
[0168] The results showed that the recombinant strain Klebsiella oxytoca VKO-6 was cultured for 24 h, which consumed 60.0 g/L of glucose, and the concentration of L-valine reached 10.2 g/L, and the yield of L-valine reached 0.170 g/g.
2.5 Batch Fermentation of L-valine Using Glucose as a Substrate by Recombinant Klebsiella oxytoca VKO-7
[0169] The method and operation steps for batch fermentation of L-valine using glucose as a substrate by a recombinant strain Klebsiella oxytoca VKO-7 referred to the method and operation steps in the step 2.1 of this example.
[0170] The results showed that the recombinant strain Klebsiella oxytoca VKO-7 was cultured for 24 h, which consumed 60.0 g/L of glucose, and the concentration of L-valine reached 21.5 g/L, and the yield of L-valine reached 0.358 g/g.
2.6 Batch Fermentation of L-valine Using Glucose as a Substrate by Recombinant Klebsiella oxytoca VKO-8
[0171] The method and operation steps for batch fermentation of L-valine using glucose as a substrate by a recombinant strain Klebsiella oxytoca VKO-8 referred to the method and operation steps in the step 2.1 of this example.
[0172] The results showed that the recombinant strain Klebsiella oxytoca VKO-8 was cultured for 28 h, which consumed 59.0 g/L of glucose, and the concentration of L-valine reached 23.2 g/L, and the yield of L-valine reached 0.393 g/g.
2.7 Batch Fermentation of L-valine Using Glucose as a Substrate by Recombinant Klebsiella oxytoca VKO-9
[0173] The method and operation steps for batch fermentation of L-valine using glucose as a substrate by a recombinant strain Klebsiella oxytoca VKO-9 referred to the method and operation steps in the step 2.1 of this example.
[0174] The results showed that the recombinant strain Klebsiella oxytoca VKO-9 was cultured for 20 h, which consumed 59.0 g/L of glucose, and the concentration of L-valine reached 35.5 g/L, and the yield of L-valine reached 0.602 g/g.
Example 3: Fed-Batch Fermentation of L-valine Using Glucose as a Substrate by Recombinant Klebsiella oxytoca VKO-9
[0175] (1) Plate culture: the recombinant strain Klebsiella oxytoca VKO-9 was streaked onto an LB medium containing agar at a mass-volume ratio of 1.6-1.8%, and cultured at 371 C. for 101 h; [0176] (2) Seed culture: under sterile conditions, a single colony was picked from the plate in the step (1) with a tip of a sterile pipette, then inoculated into 5 mL of an LB liquid medium, and cultured with oscillating in a shaker at 371 C. for 101 hours; and then inoculated into 100 mL of an LB liquid medium at an inoculation amount of 1% (v/v) and cultured with oscillating in a shaker at 371 C. for 101 hours; [0177] (3) 7.5 L fermentation tank culture: under sterile conditions, the bacterial solution obtained in the step (2) was taken and inoculated into a fermentation medium containing 50-60 g/L of glucose at an inoculation amount of 10% (v/v). The fermentation conditions were as follows: a liquid loading volume of 5 L, a culture temperature of 371 C., a culture manner of stirring culture, a stirring rotation speed of 50050 revolutions per minute, a ventilation volume of 1.60.1 vvm, and a pH maintained at 6.80.1 by adjusting with ammonia water, and among the fermentations, samples were taken every 4 hours to detect OD.sub.620nm and the concentration of the glucose in the fermentation sample, and glucose powder was added according to the glucose concentration to maintain the glucose concentration at 40-50 g/L; and at the same time the fermentation sample was subjected to high performance liquid chromatography analysis to determine the concentration of L-valine in the fermentation broth. When glucose was not consumed any more, fermentation was stopped and L-valine was obtained from the fermentation broth.
[0178] The results showed that the recombinant strain K. oxytoca VKO-9 was cultured for 56 h, which consumed 208.0 g/L of glucose, and the concentration of L-valine reached 122.0 g/L, the production intensity reached 2.18 g/L/h, and the yield of L-valine reached 0.587 g/g.
[0179] The methods for detecting the substrate glucose and the product L-valine as well as the formula of the LB medium and the formula of the fermentation medium described in the aforementioned steps were consistent with those in Example 2.
Example 4: Construction of an L-valine Producing Strain Starting From the 2,3-butanediol Producing Strain Enterobacter cloacae SDM
[0180] The starting strain Enterobacter cloacae SDM was a 2,3-butanediol producing strain obtained by the laboratory of the applicant in the early stage of screening. Its genome had been sequenced and it had been deposited in the China General Microbiological Culture Collection Center on Oct. 19, 2010, with the deposit number CGMCC No. 4230. The Enterobacter cloacae SDM belonged to the genus Enterobacter of the family Enterobacteriaceae, and was a facultative anaerobic gram-negative bacterium. The Enterobacter cloacae could produce acid and gas by fermenting glucose, was positive in a VP reaction, and has the ability to metabolize a citrate for growth. Enterobacter cloacae had a broad substrate spectrum and could metabolize monosaccharides such as arabinose, xylose and galactose, as well as polysaccharides such as cellobiose, sucrose and lactose.
4.1 Knockout of Byproduct Synthesis-Related Genes
[0181] In the starting strain Enterobacter cloacae SDM, the byproduct synthesis-related genes pox.sub.Ec, pta.sub.Ec, ldhD.sub.Ec, frdA.sub.Ec pflB.sub.Ec, adhE.sub.Ec, budA.sub.Ec, budC.sub.Ec and gldA.sub.Ec were knocked out.
4.1.1 Knockout of the Pyruvate Oxidase Gene pox.sub.Ec
[0182] The pyruvate oxidase gene pox.sub.Ec had a sequence length of 978 bases, and a nucleotide sequence as shown in SEQ ID NO.18.
[0183] Construction of knockout vector: the genomic DNA of Enterobacter cloacae SDM was prepared by conventional methods. The process referred to the method for small-scale preparation of bacterial genomes in the Concise Guide to Molecular Biology published by China Science Publishing & Media Ltd., the genomic DNA of Enterobacter cloacae SDM was extracted; and the upstream and downstream homology arms of the gene pox.sub.Ec were amplified by PCR utilizing the synthetic primers pox.sub.Ec1-ff and pox.sub.Ec1-r and pox.sub.Ec2-f and pox.sub.Ec2-r. The obtained upstream and downstream homology arms were used as templates for recombination, and then the recombinant fragment was amplified by PCR utilizing the primers pox.sub.Ec1-f and pox.sub.Ec2-r to obtain a truncated fragment of pox.sub.Ec, which contained enzyme cleavage sites of EcoRI and BamHI at both ends.
[0184] The truncated recombinant fragment of pox.sub.Ec and the suicide plasmid pK18mobsacB were subjected to double enzyme digestion with restriction endonucleases EcoRI and BamHI, respectively. The enzyme-cleaved products were recovered by a nucleic acid gel and ligated with T.sub.4DNA ligase to obtain a knockout plasmid pK18mobsacB-pox.sub.Ec.
[0185] The steps for knocking out the gene pox.sub.Ec referred to the knockout step of gene pox in the step 1.1.1 of Example 1, and the primer sequences were as follows:
TABLE-US-00015 pox.sub.Ec1-f: (SEQIDNO.112) 5-CCGGAATTCTCGAAGCTGTCATGATCCTG-3(EcoRI) pox.sub.Ec1-r: (SEQIDNO.113) 5-GGGGAGAGGGGGTACTGCCGGGGTAATTCTCCGATTTCAG-3 pox.sub.Ec2-f: (SEQIDNO.114) 5-CTGAAATCGGAGAATTACCCCGGCAGTACCCCCTCTCCCC-3 pox.sub.Ec2-r: (SEQIDNO.115) 5-CGCGGATCCCACCACGATCAGCGACTGGGATCGC-3 (BamHI)
4.1.2 Knockout of the Phosphotransacetylase Gene pta.sub.Ec
[0186] The phosphotransacetylase gene pta.sub.Ec had a sequence length of 2,142 bases, and a nucleotide sequence as shown in SEQ ID NO.19.
[0187] The steps of constructing a knockout vector for the gene pta.sub.Ec and knocking out the gene referred to the knockout steps of the gene pox.sub.Ec in the step 4.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00016 pta.sub.Ec1-f: (SEQIDNO.116) 5-CCGGAATTCCATGAGCGTTGACCAGATCA-3(EcoRI) pta.sub.Ec1-r: (SEQIDNO.117) 5-GCCATCCGGCAAGACCTTATGGTTTATCCTCTTTCGTTAC-3 pta.sub.Ec2-f: (SEQIDNO.118) 5-GTAACGAAAGAGGATAAACCATAAGGTCTTGCCGGATGGC-3 pta.sub.Ec2-r: (SEQIDNO.119) 5-TGCTCTAGAAAGGCAATGTGCTGCGCGAAGGAAG-3(XbaI)
4.1.3 Knockout of Fumarate Reductase Subunit A Gene frdA.sub.Ec
[0188] The fumarate reductase catalytic subunit gene frdA.sub.Ec had a sequence length of 1,791 bases, and a nucleotide sequence as shown in SEQ ID NO.20.
[0189] The steps of constructing a knockout vector for the gene frdA.sub.Ec and knocking out the gene referred to the knockout steps of the gene pox.sub.Ec in the step 4.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00017 frdA.sub.Ec1-f: (SEQIDNO.120) 5-CCGGAATTCCCGGGGCCAACAAAACGGGT-3(EcoRI) frdA.sub.Ec1-r: (SEQIDNO.121) 5-CAACTTTCAGGGTTTGCATCGACATTCCTCCAGATTTTTG-3 frdA.sub.Ec2-f: (SEQIDNO.122) 5-CAAAAATCTGGAGGAATGTCGATGCAAACCCTGAAAGTTG-3 frdA.sub.Ec2-r: (SEQIDNO.123) 5-CGCGGATCCCGATGAACTCAGGGTTCAGACCAAA-3(BamHI)
4.1.4 Knockout of D-lactate Dehydrogenase Gene ldhD.sub.Ec
[0190] The D-lactate dehydrogenase gene ldhD.sub.Ec had a sequence length of 990 bases, and a nucleotide sequence as shown in SEQ ID NO.21.
[0191] The steps of constructing a knockout vector for the gene ldhD.sub.Ec and knocking out the gene referred to the knockout steps of the gene pox.sub.Ec in the step 4.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00018 ldhD.sub.Ec1-f: (SEQIDNO.124) 5-CCGGAATTCACCGTGTTAAGTTCAAGCGC-3(EcoRI) ldhD.sub.Ec1-r: (SEQIDNO.125) 5-CCGCCACCCGGCATGTCGGCAAGACTTTCTCCAGTGATTT-3 ldhD.sub.Ec2-f: (SEQIDNO.126) 5-AAATCACTGGAGAAAGTCTTGCCGACATGCCGGGTGGCGG-3 ldhD.sub.Ec2-r: (SEQIDNO.127) 5-CGCGGATCCGGCGACGGTCATTATTTCGCAGGCG-3 (BamHI)
4.1.5 Knockout of the Pyruvate Formate Lyase Gene pflB.sub.Ec
[0192] The pyruvate formate lyase gene pflB.sub.Ec had a sequence length of 2,283 bases, and a nucleotide sequence as shown in SEQ ID NO.22.
[0193] The steps of constructing a knockout vector for the gene pflB.sub.Ec and knocking out the gene referred to the knockout steps of the gene pox.sub.Ec in the step 4.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00019 pflB.sub.Ec1-f: (SEQIDNO.128) 5-CCGGAATTCAGTATATGACCGCCAACGGC-3(EcoRI) pflB.sub.Ec1-r: (SEQIDNO.129) 5-GTGATTTCAGTCAATTCCAGGTAACACCTACCTTCTTAAG-3 pflB.sub.Ec2-f: (SEQIDNO.130) 5-CTTAAGAAGGTAGGTGTTACCTGGAATTGACTGAAATCAC-3 pflB.sub.Ec2-r: (SEQIDNO.131) 5-TGCTCTAGATGTATGCCTTCTTTGTGGCAGGCAC-3(XbaI)
4.1.6 Knockout of Ethanol Dehydrogenase Gene adhE.sub.Ec
[0194] The ethanol dehydrogenase gene adhE.sub.Ec had a sequence length of 1,002 bases, and a nucleotide sequence as shown in SEQ ID NO.23.
[0195] The steps of constructing a knockout vector for the gene adhE.sub.Ec and knocking out the gene referred to the knockout steps of the gene pox.sub.Ec in the step 4.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00020 adhE.sub.Ec1-f: (SEQIDNO.132) 5-CCGGAATTCTCGTCAGAAATCGAGACATC-3(EcoRI) adhE.sub.Ec1-r: (SEQIDNO.133) 5-GGGTGAGGGAATCAGGCCACGGTGAACTCCTCAATGGAAT-3 adhE.sub.Ec2-f: (SEQIDNO.134) 5-ATTCCATTGAGGAGTTCACCGTGGCCTGATTCCCTCACCC-3 adhE.sub.Ec2-r: (SEQIDNO.135) 5-TGCTCTAGATTCAGTATTCTGATTACGATAAAAT-3(XbaI)
4.1.7 Knockout of -acetolactate Decarboxylase Gene budA.sub.Ec
[0196] The -acetolactate decarboxylase gene budA.sub.Ec had a sequence length of 780 bases, and a nucleotide sequence as shown in SEQ ID NO.24.
[0197] The steps of constructing a knockout vector for the gene budA.sub.Ec and knocking out the gene referred to the knockout steps of the gene pox.sub.Ec in the step 4.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00021 budA.sub.Ec1-f: (SEQIDNO.136) 5-CCGGAATTCGAAGACATATTGGCCTCCAC-3(EcoRI) budA.sub.Ec1-r: (SEQIDNO.137) 5-TGTTCACGGTAGTTCTCCTGCATGCTCGTCCTCTTCAACT-3 budA.sub.Ec2-f: (SEQIDNO.138) 5-AGTTGAAGAGGACGAGCATGCAGGAGAACTACCGTGAACA-3 budA.sub.Ec2-r: (SEQIDNO.139) 5-TGCTCTAGACACCGCCCGGCCTGCCGTGCTCGGC-3(XbaI)
4.1.8 Knockout of 2,3-butanediol Dehydrogenase Gene budC.sub.Ec
[0198] The 2,3-butanediol dehydrogenase gene budC.sub.Ec had a sequence length of 771 bases, and a nucleotide sequence as shown in SEQ ID NO.25.
[0199] The steps of constructing a knockout vector for the gene budC.sub.Ec and knocking out the gene referred to the knockout steps of the gene pox.sub.Ec in the step 4.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00022 budC.sub.Ec1-f: (SEQIDNO.140) 5-CCGGAATTCATCGCCCGCTACCTCTACAG-3(EcoRI) budC.sub.Ec1-r: (SEQIDNO.141) 5-ATGTCAGAGCTTATTAGAATTTCTCTGTCCTTATAGTGAG-3 budC.sub.Ec2-f: (SEQIDNO.142) 5-CTCACTATAAGGACAGAGAAATTCTAATAAGCTCTGACAT-3 budC.sub.Ec2-r: (SEQIDNO.143) 5-TGCTCTAGATTCGCCCGGCTTTTTGTCGGATTTC-3(XbaI)
4.1.9 Knockout of Glycerol Dehydrogenase Gene gldA.sub.Ec
[0200] The glycerol dehydrogenase gene gldA.sub.Ec had a sequence length of 1,104 bases, and a nucleotide sequence as shown in SEQ ID NO.26.
[0201] The steps of constructing a knockout vector for the gene gldA.sub.Ec and knocking out the gene referred to the knockout steps of the gene pox.sub.Ec in the step 4.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00023 gldA.sub.Ec1-f: (SEQIDNO.144) 5-CCGGAATTCAAACAATGAGCCGCGACGCA-3(EcoRI) gldA.sub.Ec1-r: (SEQIDNO.145) 5-TAGCGCACCCGGCGTTTTTGAACATATCTCCCTTAGAGGT-3 gldA.sub.Ec2-f: (SEQIDNO.146) 5-ACCTCTAAGGGAGATATGTTCAAAAACGCCGGGTGCGCTA-3 gldA.sub.Ec2-r: (SEQIDNO.147) 5-TGCTCTAGACGATTGCCGACGGTTTCCGCAACTA-3(XbaI)
[0202] Finally, the engineered strain of Enterobacter cloacae in which the byproduct-related genes had been correctly knocked out was named Enterobacter cloacae VEC-0, with the genotype of Enterobacter cloacae SDM pox.sub.Ec pta.sub.Ec frdA.sub.Ec ldhD.sub.Ec pflB.sub.Ec adhE.sub.Ec budA.sub.Ec budC.sub.Ec gldA.sub.Ec.
4.2 Redirection of Metabolic Flux From 2,3-butanediol Synthesis to L-valine Production
4.2.1 Insertion of Dihydroxyacid Dehydratase Gene ilvD Derived From Escherichia coli W3110 Into the Site of D-lactate Dehydrogenase Gene ldhD.sub.Ec
[0203] The dihydroxyacid dehydratase gene ilvD had a sequence length of 1,851 bases, and a nucleotide sequence as shown in SEQ ID NO.17.
[0204] The steps for constructing and operating a gene replacement vector for inserting the dihydroxyacid dehydratase gene ilvD derived from Escherichia coli W3110 into the site of D-lactate dehydrogenase gene ldhD.sub.Ec referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.
[0205] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00024 ldhD.sub.Ec::ilvD1-f: (SEQIDNO.148) 5-AACAGCTATGACATGATTACGAATTCACCGTGTTAAGTTC AAGCGC-3(EcoRI) ldhD.sub.Ec::ilvD1-r: (SEQIDNO.149) 5-GCGGAACGGTACTTAGGCATAAGACTTTCTCCAGTGATTT- 3 ldhD.sub.Ec::ilvD2-f: (SEQIDNO.150) 5-AAATCACTGGAGAAAGTCTTATGCCTAAGTACCGTTCCGC- 3 ldhD.sub.Ec::ilvD2-r: (SEQIDNO.151) 5-CCGCCACCCGGCATGTCGGCTTAACCCCCCAGTTTCGATT- 3 ldhD.sub.Ec::ilvD3-f: (SEQIDNO.152) 5-AATCGAAACTGGGGGGTTAAGCCGACATGCCGGGTGGCG G-3 ldhD.sub.Ec::ilvD3-r: (SEQIDNO.153) 5-GCCTGCAGGTCGACTCTAGAGGATCCGGCGACGGTCATTA TTTCGCAGGCG-3(BamHI)
4.2.2 Insertion of the L-leucine Dehydrogenase Gene bcd Derived From Bacillus subtilis 168 Into the Site of Ethanol Dehydrogenase Gene adhE.sub.Ec
[0206] The L-leucine dehydrogenase gene bcd had a sequence length of 1,095 bases, and a nucleotide sequence as shown in SEQ ID NO.7.
[0207] The steps for constructing and operating a gene replacement vector for inserting the L-leucine dehydrogenase gene bcd derived from Bacillus subtilis 168 into the site of ethanol dehydrogenase gene adhE.sub.Ec referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.
[0208] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00025 adhE.sub.Ec::bcd1-f: (SEQIDNO.154) 5-AACAGCTATGACATGATTACGAATTCTCGTCAGAAATCGA GACATC-3(EcoRI) adhE.sub.Ec::bcd1-r: (SEQIDNO.155) 5-ATATATTTAAAAAGTTCCATGGTGAACTCCTCAATGGAAT-3 adhE.sub.Ec::bcd2-f: (SEQIDNO.156) 5-ATTCCATTGAGGAGTTCACCATGGAACTTTTTAAATATAT-3 adhE.sub.Ec::bcd2-r: (SEQIDNO.157) 5-GGGTGAGGGAATCAGGCCACTTAACGTCTGCTTAATACAC- 3 adhE.sub.Ec::bcd3-f: (SEQIDNO.158) 5-GTGTATTAAGCAGACGTTAAGTGGCCTGATTCCCTCACCC- 3 adhE.sub.Ec::bcd3-r: (SEQIDNO.159) 5-GCCTGCAGGTCGACTCTAGAGGATCCTTCAGTATTCTGATT ACGATAAAAT-3(BamHI)
4.2.3 Insertion of the Acetohydroxyacid Isomeroreductase Cofactor Preference Mutant Protein Coding Gene ilvC.sup.M(L67E,R68F,K75E) Derived From Escherichia coli W3110 Into the Site of -Acetolactate Decarboxylase Gene budA.sub.Ec
[0209] The acetohydroxyacid isomeroreductase cofactor preference mutant protein coding gene ilvC.sup.M(L67E,R68F,K73E) had a sequence length of 1,476 bases, and a nucleotide sequence as shown in SEQ ID NO.9.
[0210] The steps for constructing and operating a gene replacement vector for inserting the acetohydroxyacid isomeroreductase cofactor preference mutant protein coding gene ilvC.sup.M(L67E,R68F,K73E) derived from Escherichia coli W3110 into the site of -acetolactate decarboxylase gene budA.sub.Ec referred to the operation steps of replacing the gene budA with the gene ilvC.sup.M(L67E,R68F,K73E) in the step 1.2.3 of Example 1.
[0211] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00026 budA.sub.Ec::ilvC.sup.M(L67E,R68F,K75E)1-f: (SEQIDNO.160) 5-AACAGCTATGACATGATTACGAATTCGAAGA CATATTGGCCTCCAC-3(EcoRI) budA.sub.Ec::ilvC.sup.M(L67E,R68F,K75E)1-r: (SEQIDNO.161) 5-GTATTGAAGTAGTTAGCCATCATGCTCGTCCT CTTCAACT-3 budA.sub.Ec::ilvC.sup.M(L67E,R68F,K75E)2-f: (SEQIDNO.162) 5-AGTTGAAGAGGACGAGCATGATGGCTAACTA CTTCAATAC-3 budA.sub.Ec::ilvC.sup.M(L67E,R68F,K75E)2-r: (SEQIDNO.163) 5-GCTTTACGCCAGGACGCGCGCTCCTCGGCAA TCGCTTCTTTAAACTCAGCGTAGGAGATATCGAGAC-3 budA.sub.Ec::ilvC.sup.M(L67E,R68F,K75E)3-f: (SEQIDNO.164) 5-GTCTCGATATCTCCTACGCTGAGTTTAAAGAA GCGATTGCCGAGGAGCGCGCGTCCTGGCGTAAAGC-3 budA.sub.Ec::ilvC.sup.M(L67E,R68F,K75E)3-r: (SEQIDNO.165) 5-TGTTCACGGTAGTTCTCCTGTTAACCCGCAA CAGCAATAC-3 budA.sub.Ec::ilvC.sup.M(L67E,R68F,K75E)4-f: (SEQIDNO.166) 5-GTATTGCTGTTGCGGGTTAACAGGAGAACTA CCGTGAACA-3 budA.sub.Ec::ilvC.sup.M(L67E,R68F,K75E)4-r: (SEQIDNO.167) 5-GCCTGCAGGTCGACTCTAGAGGATCCCACCG CCCGGCCTGCCGTGCTCGGC-3(BamHI)
[0212] The final resulting recombinant engineered strain of Enterobacter cloacae was named Enterobacter cloacae VEC-3, with the genotype of Enterobacter cloacae SDM pox.sub.Ec pta.sub.Ec frdA.sub.Ec pflB.sub.Ec budC.sub.Ec gldA.sub.Ec ldhD.sub.Ec::ilvD adhE.sub.Ec::bcd budA.sub.Ec::ilvC.sup.M(L67E,R68F,K73E)
4.3 Plasmid Overexpression of the Acetohydroxyacid Isomeroreductase Coding Gene ilvC Derived from Escherichia coli W3110, the Branched-Chain Amino Acid Transporter Gene brnFE Derived From Corynebacterium glutamicum ATCC13869, and the -acetolactate Synthase Gene alsS Derived From Bacillus subtilis 168 to Improve L-valine Synthesis
[0213] The branched-chain amino acid transporter gene brnFE had a sequence length of 1,079 bases, and a nucleotide sequence as shown in SEQ ID NO.11. The -acetolactate synthase gene alsS had a sequence length of 1,713 bases, and a nucleotide sequence as shown in SEQ ID NO.12. The acetohydroxyacid isomeroreductase gene ilvC had a sequence length of 1,476 bases, and a nucleotide sequence as shown in SEQ ID NO.14.
[0214] Construction of gene expression vector: the genome of Escherichia coli W3110 was used as a template, and the synthetic primers ilvC-f and ilvC-r were utilized for PCR amplification to obtain a ilvC gene fragment; the genome of Corynebacterium glutamicum ATCC13869 was used as a template, and the synthetic primers brnFE-f and brnFE-r were utilized for PCR amplification to obtain a brnFE gene fragment; and the genome of Bacillus subtilis 168 was used as a template, and the synthetic primers alsS-f and alsS-r were utilized for PCR amplification to obtain an alsS gene fragment. The obtained gene fragments of ilvC, brnFE and alsS were used as templates for recombinant PCR, and then the recombinant fragments were amplified by PCR using the primers ilvC-f and alsS-r to obtain a gene tandem expression fragment of ilvC, brnFE and alsS, which contained enzyme cleavage sites of EcoRI and BamHI at both ends.
[0215] The gene tandem expression fragments of ilvC, brnFE and alsS and pKD4 were subjected to double enzyme digestion with restriction endonucleases EcoRI and BamHI, respectively. The enzyme-cleaved products were recovered by a nucleic acid gel and ligated with T.sub.4DNA ligase to obtain a gene expression plasmid pKD4-ilvC-brnFE-alsS.
[0216] Introduction of expression plasmid by electroporation: the recombinant strain Enterobacter cloacae VEC-3 was transferred into a shake flask in an LB medium containing 0.7 mM of EDTA, cultured until the OD.sub.620nm was about 0.6-0.8, and placed on ice for 30 min. The culture solution was centrifuged at 6,000 rpm for 8 min to collect strains, the strains were washed three times with sterile ddH.sub.2O, and resuspended to an OD.sub.620nm of about 50, which was the competent cell. 100 L of the competent cells were taken, added with about 1 g of the plasmid to be transformed, tapped to mix well, placed on ice for 5 min, and added into a 2 mm electroporation cup. Electroporation was conducted with electroporation parameters of 2,000 V, 200 , and 25 F. Immediately after electroporation, 900 L of an LB liquid medium was added. Then the culture solution was transferred into a sterile centrifuge tube, incubated in a shaker at 37 C. and 180 rpm for 1 h, diluted and spread on a resistant LB solid medium containing 50 g/mL of kanamycin, and incubated in a 37 C. incubator overnight.
[0217] The primers for amplifying the gene tandem expression fragment were designed as follows:
TABLE-US-00027 ilvC-f: (SEQIDNO.168) 5-AGCGAATTCATGGCTAACTACTTCAATAC-3(EcoRI) ilvC-r: (SEQIDNO.169) 5-ATCTCTTGCGTTTTTTGCACTTAACCCGCAACAGCAATAC-3 brnFE-f: (SEQIDNO.170) 5-GTATTGCTGTTGCGGGTTAAGTGCAAAAAACGCAAGAGAT-3 brnFE-r: (SEQIDNO.171) 5-CTTTTGTTGCTTTTGTCAATTAGAAAAGATTCACCAGTC-3 alsS-f: (SEQIDNO.172) 5-GACTGGTGAATCTTTTCTAATTGACAAAAGCAACAAAAGA-3 alsS-r: (SEQIDNO.173) 5-AGCGGATCCCTAGAGAGCTTTCGTTTTCA-3 (BamHI)
[0218] The final resulting recombinant engineered strain of Enterobacter cloacae was named Enterobacter cloacae VEC-3/pKD4-ilvC-brnFE-alsS, with the genotype of Enterobacter cloacae SDM pox.sub.Ec pta.sub.Ec frdA.sub.Ec pflB.sub.Ec budC.sub.Ec gldA.sub.Ec ldhD.sub.Ec::ilvD adhE.sub.Ec::bcd budA.sub.Ec::ilvC.sup.M(L67E,R68F,K75E)/pKD4-ilvC-brnFE-alsS.
4.4 Fed-Batch Fermentation of Engineered Strain of Enterobacter cloacae VEC-3/pKD4-ilvC-brnFE-alsS Using Glucose as a Substrate to Produce L-valine [0219] (1) Plate culture: the recombinant Enterobacter cloacae strain VEC-3/pKD4-ilvC-brnFE-alsS was streaked onto an LB medium containing agar in a mass volume ratio of 1.6-1.8% and 50 g/mL of kanamycin, and cultured at 301 C. for 101 h. [0220] (2) Seed culture: under sterile conditions, a single colony was picked from the plate in the step (1) with a tip of a sterile pipette, then inoculated into 5 mL of an LB liquid medium containing 50 g/mL of kanamycin, and cultured with oscillating in a shaker at 301 C. for 101 hours; and then inoculated into 100 mL of an LB liquid medium containing 50 g/mL of kanamycin at an inoculation amount of 1% (v/v) and cultured with oscillating in a shaker at 301 C. for 101 hours; [0221] (3) 7.5 L fermentation tank culture: under sterile conditions, the bacterial solution obtained in the step (2) was taken and inoculated into a fermentation medium containing 50-60 g/L of glucose and 50 g/mL of kanamycin at an inoculation amount of 5% (v/v). The fermentation conditions were as follows: a liquid loading volume of 5 L, a culture temperature of 301 C., a culture manner of stirring culture, a stirring rotation speed of 50050 revolutions per minute, a ventilation volume of 1.00.1 vvm, and a pH maintained at 7.00.1 by adjusting with ammonia water, and among the fermentations, samples were taken every 4 hours to detect OD.sub.620nm and the concentration of the glucose in the fermentation sample, and glucose powder was added according to the glucose concentration to maintain the glucose concentration at 40-50 g/L; and at the same time the fermentation sample was subjected to high performance liquid chromatography analysis to determine the concentration of L-valine in the fermentation broth. When glucose was not consumed any more, fermentation was stopped and L-valine was obtained from the fermentation broth.
[0222] The results showed that the recombinant strain VEC-3/pKD4-ilvC-brnFE-alsS was cultured for 44 h, which consumed 189.0 g/L of glucose, and the concentration of L-valine reached 94.3 g/L, the production intensity reached 2.14 g/L/h, and the yield of L-valine reached 0.499 g/g.
[0223] The methods for detecting the substrate glucose and the product L-valine as well as the formula of the LB medium described in the aforementioned steps were consistent with those in Example 2.
[0224] The formula of the fermentation medium described in the aforementioned step (3) was: 5 g/L of yeast powder, 12.069 g/L of Na.sub.2HPO.sub.4.Math.12H.sub.2O, 3 g/L of KH.sub.2PO.sub.4, 0.5 g/L of NaCl, 0.5 g/L of NH.sub.4Cl, 1 mL of a 1 M MgSO4 solution, 0.3 mL of a 1 M CaCl.sub.2 solution, 10 mL of a trace element solution (100), with the pH of the medium being adjusted to 6.8, and the medium being sterilized at 121 C. for 20 minutes. The formula of the trace element solution (100) is: 5 g/L of EDTA, 0.83 g/L of FeCl.sub.3.Math.6H.sub.2O, 84 mg/L of ZnCl.sub.2, 13 mg/L of CuCl.sub.2.Math.2H.sub.2O, 10 mg/L of CoCl.sub.2.Math.2H.sub.2O, 10 mg/L of H.sub.3BO.sub.3, and 1.6 mg/L of MnCl.sub.2.Math.4H.sub.2O.
Example 5: Construction of an L-valine Producing Strain Starting From the 2,3-butanediol Producing Strain Bacillus licheniformis 10-1-A.
[0225] The starting strain Bacillus licheniformis 10-1-A was deposited in the China General Microbiological Culture Collection Center on Nov. 14, 2011, with the deposit number: CGMCC NO. 5461. The Bacillus licheniformis 10-1-A belonged to a gram-positive bacterium that grows aerobically or facultatively anaerobically, had strong protein secretion ability and a fast growth rate, and was a recognized biosafety bacterium. It had a rod-shaped morphology, a red or white colony color, produced spores, had a positive VP reaction, could utilize glucose, sucrose, and fructose to produce acids, could hydrolyze casein, gelatin, and Tween 80, could utilize a citrate, could grow in a medium containing 100 g/L of NaCl, and could grow under conditions of 42-60 C.
5.1 Knockout of Byproduct Synthesis-Related Genes
[0226] In the starting strain Bacillus licheniformis 10-1-A, the byproduct synthesis-related genes pox.sub.Bl, pta.sub.Bl, ldhD.sub.Bl, frdA.sub.Bl, pflB.sub.Bl, adhE.sub.Bl, budA.sub.Bl, budC.sub.Bl and gldA.sub.Bl were knocked out.
5.1.1 Knockout of the Pyruvate Oxidase Gene pox.sub.Bl
[0227] The pyruvate oxidase gene pox.sub.Bl had a sequence length of 1,722 bases, and a nucleotide sequence as shown in SEQ ID NO.27.
[0228] Construction of knockout vector: the genomic DNA of Bacillus licheniformis 10-1-A was prepared by conventional methods. The process referred to the method for small-scale preparation of bacterial genomes in the Concise Guide to Molecular Biology published by China Science Publishing & Media Ltd., the genomic DNA of Bacillus licheniformis 10-1-A was extracted; and the upstream and downstream homology arms of the pox.sub.Bl gene were amplified by PCR utilizing the synthetic primers pox.sub.Bl1-f and pox.sub.Bl1-r and pox.sub.Bl2-f and pox.sub.Bl2-r. The obtained upstream and downstream homology arms were used as templates for recombination, and then the recombinant fragment was amplified by PCR utilizing the primers pox.sub.Bl1-f and pox.sub.Bl2-r to obtain a truncated fragment of pox.sub.Bl, which contained enzyme cleavage sites of SmaI and BamHI at both ends.
[0229] The truncated recombinant fragment of pox.sub.Bl and the suicide plasmid pKVM1 were subjected to double enzyme digestion with restriction endonucleases SmaI and BamHI, respectively. The enzyme-cleaved products were recovered by a nucleic acid gel and ligated with T.sub.4DNA ligase to obtain a knockout plasmid pKVM1-pox.sub.Bl.
[0230] The steps for knocking out the gene pox.sub.Ec referred to the knockout step of gene pox in the step 1.1.1 of Example 1, and the primer sequences were as follows:
TABLE-US-00028 pox.sub.Bl1-f: (SEQIDNO.174) 5-CCGGGGCCCGTACCTGTCGCGGGTGTGAC-3 (SmaI) pox.sub.Bl1-r: (SEQIDNO.175) 5-CGATCTCCCTTGGCATCATAATCACGTCCTCCTTTGTTTT-3 pox.sub.Bl2-f: (SEQIDNO.176) 5-AAAACAAAGGAGGACGTGATTATGATGCCAAGGGAGATCG-3 pox.sub.Bl2-r: (SEQIDNO.177) 5-CGCGGATCCGGGGGCGGTATATGTCCAGGTAAAG-3 (BamHI)
5.1.2 Knockout of the Phosphotransacetylase Gene pta.sub.Bl
[0231] The phosphotransacetylase gene pta.sub.Bl had a sequence length of 972 bases, and a nucleotide sequence as shown in SEQ ID NO.28.
[0232] The steps of constructing a knockout vector for the gene pta.sub.Bl and knocking out the gene referred to the knockout steps of the gene pox.sub.Bl in the step 5.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00029 pta.sub.Bl1-f: (SEQIDNO.178) 5-CCGGGGCCCCGACGATGCTGTAAAGCGTA-3 (SmaI) pta.sub.Bl1-r: (SEQIDNO.179) 5-CACCTTTTTCAGGAAGCCTATATATACCCTCCTTGAAAGT-3 pta.sub.Bl2-f: (SEQIDNO.180) 5-ACTTTCAAGGAGGGTATATATAGGCTTCCTGAAAAAGGTG-3 pta.sub.Bl2-r: (SEQIDNO.181) 5-TGCGGATCCAAGAAAAGCGATTATCTTTATACAT-3 (BamHI)
5.1.3 Knockout of Fumarate Reductase Subunit A Gene frdA.sub.Bl
[0233] The fumarate reductase catalytic subunit gene frdA.sub.Bl had a sequence length of 1,389 bases, and a nucleotide sequence as shown in SEQ ID NO.29.
[0234] The steps of constructing a knockout vector for the gene frdA.sub.Bl and knocking out the gene referred to the knockout steps of the gene pox.sub.Bl in the step 5.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00030 frdA.sub.Bl1-f: (SEQIDNO.182) 5-CCGGGGCCCAAAGTAAAAAATGATTCCGT-3 (SmaI) frdA.sub.Bl1-r: (SEQIDNO.183) 5-GCATGCAGCCGGTTTGTTGATTTCTTATCCCTTCCTTCTC-3 frdA.sub.Bl2-f: (SEQIDNO.184) 5-GAGAAGGAAGGGATAAGAAATCAACAAACCGGCTGCATGC-3 frdA.sub.Bl2-r: (SEQIDNO.185) 5-CGCGGATCCAAGAAAAGCGATTATCTTTATACAT-3 (BamHI)
5.1.4 Knockout of L-lactate Dehydrogenase Gene ldhL.sub.Bl
[0235] The L-lactate dehydrogenase gene ldhL.sub.Bl had a sequence length of 960 bases, and a nucleotide sequence as shown in SEQ ID NO.30.
[0236] The steps of constructing a knockout vector for the gene ldhL.sub.Bl and knocking out the gene referred to the knockout steps of the gene pox.sub.Bl in the step 5.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00031 ldhL.sub.Bl1-f: (SEQIDNO.186) 5-CCGGGGCCCTATAAAAAAGATGACAACAA-3 (SmaI) ldhL.sub.Bl1-r: (SEQIDNO.187) 5-AGTATCTTCATGGTGTTCAGGACTCATCATTCCTTTGCCG-3 ldhL.sub.Bl2-f: (SEQIDNO.188) 5-CGGCAAAGGAATGATGAGTCCTGAACACCATGAAGATACT-3 ldhL.sub.Bl2-r: (SEQIDNO.189) 5-CGCGGATCCGTTTAAAACCAAGCTCGACAAGAAG-3 (BamHI)
5.1.5 Knockout of the Pyruvate Formate Lyase Gene pflB.sub.Bl
[0237] The pyruvate formate lyase gene pflB.sub.Bl had a sequence length of 2,226 bases, and a nucleotide sequence as shown in SEQ ID NO.31.
[0238] The steps of constructing a knockout vector for the gene pflB.sub.Bl and knocking out the gene referred to the knockout steps of the gene pox.sub.Bl in the step 5.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00032 pflB.sub.Bl1-f: (SEQIDNO.190) 5-CCGGGGCCCTGACTTCTCCCATTGCAGCA-3 (SmaI) pflB.sub.Bl1-r: (SEQIDNO.191) 5-CGCGCTCCGCTTATTGCTCGTTAAATCCCCCTCTTTTTCA-3 pflB.sub.Bl2-f: (SEQIDNO.192) 5-TGAAAAAGAGGGGGATTTAACGAGCAATAAGCGGAGCGCG-3 pflB.sub.Bl2-r: (SEQIDNO.193) 5-TGCGGATCCGGCATTCCTGTCAGGTTGATATGTT-3 (BamHI)
5.1.6 Knockout of Ethanol Dehydrogenase Gene adhE.sub.Bl
[0239] The ethanol dehydrogenase gene adhE.sub.Bl had a sequence length of 2,604 bases, and a nucleotide sequence as shown in SEQ ID NO.32.
[0240] The steps of constructing a knockout vector for the gene adhE.sub.Bl and knocking out the gene referred to the knockout steps of the gene pox.sub.Bl in the step 5.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00033 adhE.sub.Bl1-f: (SEQIDNO.194) 5-CCGGGGCCCTCGCTGAAAAACTAAAAGAA-3 (SmaI) adhE.sub.Bl1-r: (SEQIDNO.195) 5-CGGAATGACGGCTTTTTTGGTGTAAACCCTCCAGTGAATG-3 adhE.sub.Bl2-f: (SEQIDNO.196) 5-CATTCACTGGAGGGTTTACACCAAAAAAGCCGTCATTCCG-3 adhE.sub.Bl2-r: (SEQIDNO.197) 5-TGCGGATCCTGCGAATGGTTGTACTTCTTTTCCG-3 (BamHI)
5.1.7 Knockout of -acetolactate Decarboxylase Gene budA.sub.Bl
[0241] The -acetolactate decarboxylase gene budA.sub.Bl had a sequence length of 762 bases, and a nucleotide sequence as shown in SEQ ID NO.33.
[0242] The steps of constructing a knockout vector for the gene budA.sub.Bl and knocking out the gene referred to the knockout steps of the gene pox.sub.Bl in the step 5.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00034 budA.sub.Bl1-f: (SEQIDNO.198) 5-CCGGGGCCCTGGGGTGGCTTTGCCGTGGG-3 (SmaI) budA.sub.Bl1-r: (SEQIDNO.199) 5-TTCAAAGAGGGCTTTTTCATTTTCCTCTTTTCACTCCCTT-3 budA.sub.Bl2-f: (SEQIDNO.200) 5-AAGGGAGTGAAAAGAGGAAAATGAAAAAGCCCTCTTTGAA-3 budA.sub.Bl2-r: (SEQIDNO.201) 5-TGCGGATCCTTGAAGCGATCAGAAGCTCAGGGAA-3 (BamHI)
5.1.8 Knockout of 2,3-butanediol Dehydrogenase Gene budC.sub.Bl
[0243] The 2,3-butanediol dehydrogenase gene budC.sub.Bl had a sequence length of 783 bases, and a nucleotide sequence as shown in SEQ ID NO.34.
[0244] The steps of constructing a knockout vector for the gene budC.sub.Bl and knocking out the gene referred to the knockout steps of the gene pox.sub.Bl in the step 5.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00035 budC.sub.Bl1-f: (SEQIDNO.202) 5-CCGGGGCCCAAAGCGCATGTTTTAAAACC-3 (SmaI) budC.sub.Bl1-r: (SEQIDNO.203) 5-TATAGAATATAATTTTAAAAATAAACATCTTCTTTCTATA-3 budC.sub.Bl2-f: (SEQIDNO.204) 5-TATAGAAAGAAGATGTTTATTTTTAAAATTATATTCTATA-3 budC.sub.Bl2-r: (SEQIDNO.205) 5-TGCGGATCCTTGAAGCGATCAGAAGCTCAGGGAA-3 (BamHI)
5.1.9 Knockout of Glycerol Dehydrogenase Gene gldA.sub.Bl
[0245] The glycerol dehydrogenase gene gldA.sub.Bl had a sequence length of 1,104 bases, and a nucleotide sequence as shown in SEQ ID NO.35.
[0246] The steps of constructing a knockout vector for the gene gldA.sub.Bl and knocking out the gene referred to the knockout steps of the gene pox.sub.Bl in the step 5.1.1 of this example, and the primer sequences were as follows:
TABLE-US-00036 gldA.sub.Bl1-f: (SEQIDNO.206) 5-ATTTAGATCTAACAAGCCGCGTCATTCAAG-3 (BglII) gldA.sub.Bl1-r: (SEQIDNO.207) 5-ACTTGGCGCCATTCTTCTTCGACACATCGCAAATGATA-3 gldA.sub.Bl2-f: (SEQIDNO.208) 5-TATCATTTGCGATGTGTCGAAGAAGAATGGCGCCAAGT-3 gldA.sub.Bl2-r: (SEQIDNO.209) 5-TACCGTGGATCCGCTTTAAG-3 (BamHI)
[0247] Finally, the recombinant Bacillus licheniformis in which the byproduct-related genes had been correctly knocked out was named Bacillus licheniformis VBL-0, with the genotype of Bacillus licheniformis 10-1-A pox.sub.Bl pta.sub.Bl frdA.sub.Bl ldhL.sub.Bl pflB.sub.Bl adhE.sub.bl budA.sub.Bl budC.sub.Bl gldA.sub.Bl.
5.2 Redirection of Metabolic Flux From 2,3-butanediol Synthesis to L-valine Production
5.2.1 Insertion of Dihydroxyacid Dehydratase Gene ilvD Derived From Escherichia coli W3110 Into the Site of L-lactate Dehydrogenase Gene ldhL.sub.Bl
[0248] The dihydroxyacid dehydratase gene ilvD had a sequence length of 1,851 bases, and a nucleotide sequence as shown in SEQ ID NO.17.
[0249] The steps for constructing and operating a gene replacement vector for inserting the dihydroxyacid dehydratase gene ilvD derived from Escherichia coli W3110 into the site of L-lactate dehydrogenase gene ldhL.sub.Bl referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.
[0250] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00037 ldhL.sub.Bl::ilvD1-f: (SEQIDNO.210) 5-CCGGGGCCCTATAAAAAAGATGACAACAA-3 (SmaI) ldhL.sub.Bl::ilvD1-r: (SEQIDNO.211) 5-GCGGAACGGTACTTAGGCATGACTCATCATTCCTTTGCCG-3 ldhL.sub.Bl::ilvD2-f: (SEQIDNO.212) 5-CGGCAAAGGAATGATGAGTCATGCCTAAGTACCGTTCCGC-3 ldhL.sub.Bl::ilvD2-r: (SEQIDNO.213) 5-AGTATCTTCATGGTGTTCAGTTAACCCCCCAGTTTCGATT-3 ldhL.sub.Bl::ilvD3-f: (SEQIDNO.214) 5-AATCGAAACTGGGGGGTTAACTGAACACCATGAAGATACT-3 ldhL.sub.Bl::ilvD3-r: (SEQIDNO.215) 5-CGCGGATCCGTTTAAAACCAAGCTCGACAAGAAG-3 (BamHI)
5.2.2 Insertion of the L-leucine Dehydrogenase Gene bcd Derived From Bacillus subtilis 168 Into the Site of Ethanol Dehydrogenase Gene adhE.sub.Bl
[0251] The L-leucine dehydrogenase gene bcd had a sequence length of 1,095 bases, and a nucleotide sequence as shown in SEQ ID NO.7.
[0252] The steps for constructing and operating a gene replacement vector for inserting the L-leucine dehydrogenase gene bcd derived from Bacillus subtilis 168 into the site of ethanol dehydrogenase gene adhE.sub.Bl referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.
[0253] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00038 adhE.sub.Bl::bcd1-f: (SEQIDNO.216) 5-CCGGGGCCCTCGCTGAAAAACTAAAAGAA-3 (SmaI) adhE.sub.Bl::bcd1-r: (SEQIDNO.217) 5-ATATATTTAAAAAGTTCCATTGTAAACCCTCCAGTGAATG-3 adhE.sub.Bl::bcd2-f: (SEQIDNO.218) 5-CATTCACTGGAGGGTTTACAATGGAACTTTTTAAATATAT-3 adhE.sub.Bl::bcd2-r: (SEQIDNO.219) 5-CGGAATGACGGCTTTTTTGGTTAACGTCTGCTTAATACAC-3 adhE.sub.Bl::bcd3-f: (SEQIDNO.220) 5-GTGTATTAAGCAGACGTTAACCAAAAAAGCCGTCATTCCG-3 adhE.sub.Bl::bcd3-r: (SEQIDNO.221) 5-TGCGGATCCTGCGAATGGTTGTACTTCTTTTCCG-3 (BamHI)
5.2.3 Insertion of the Acetohydroxyacid Isomeroreductase Cofactor Preference Mutant Protein Coding Gene ilvC.sup.M(L67E,R68F,K75E) Derived From Escherichia coli W3110 Into the Site of -acetolactate Decarboxylase Gene budA.sub.Bl
[0254] The acetohydroxyacid isomeroreductase cofactor preference mutant protein coding gene ilvC.sup.M(L67E,R68F,K75E) had a sequence length of 1,476 bases, and a nucleotide sequence as shown in SEQ ID NO.9.
[0255] The steps for constructing and operating a gene replacement vector for inserting the acetohydroxyacid isomeroreductase cofactor preference mutant protein coding gene ilvC.sup.M(L67E,R68F,K75E) derived from Escherichia coli W3110 into the site of -acetolactate decarboxylase gene budA.sub.Bl referred to the operation steps of replacing the gene budA with the gene ilvC.sup.M(L67E,R68F,K75E) in the step 1.2.3 of Example 1.2.
[0256] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00039 budA.sub.Bl:ilvC.sup.M(L67E,R68F,K75E)1-f: (SEQIDNO.222) 5-CCGGGGCCCTGGGGTGGCTTTGCCGTGGG-3 (SmaI) budA.sub.Bl:ilvC.sup.M(L67E,R68F,K75E)1-r: (SEQIDNO.223) 5-GTATTGAAGTAGTTAGCCATTTTCCTCTTTTCACTCCCTT-3 budA.sub.Bl::ilvC.sup.M(L67E,R68F,K75E)2-f: (SEQIDNO.224) 5-AAGGGAGTGAAAAGAGGAAAATGGCTAACTACTTCAATAC-3 budA.sub.Bl::ilvC.sup.M(L67E,R68F,K75E)2-r: (SEQIDNO.225) 5-GCTTTACGCCAGGACGCGCGCTCCTCGGCAATCGCTTC TTTAAACTCAGCGTAGGAGATATCGAGAC-3 budA.sub.Bl:ilvC.sup.M(L67E,R68F,K75E)3-f: (SEQIDNO.226) 5-GTCTCGATATCTCCTACGCTGAGTTTAAAGAAGCGATT GCCGAGGAGCGCGCGTCCTGGCGTAAAGC-3 budA.sub.Bl:ilvC.sup.M(L67E,R68F,K75E)3-r: (SEQIDNO.227) 5-TTCAAAGAGGGCTTTTTCATTTAACCCGCAACAGCAATAC-3 budA.sub.Bl:ilvC.sup.M(L67E,R68F,K75E)4-f: (SEQIDNO.228) 5-GTATTGCTGTTGCGGGTTAAATGAAAAAGCCCTCTTTGAA-3 budA.sub.Bl:ilvC.sup.M(L67E,R68F,K75E)4-r: (SEQIDNO.229) 5-TGCGGATCCTTGAAGCGATCAGAAGCTCAGGGAA-3 (BamHI)
[0257] The final resulting recombinant Bacillus licheniformis was named Bacillus licheniformis VBL-3, with the genotype of Bacillus licheniformis 10-1-A pox.sub.Bl pta.sub.Bl frdA.sub.Bl pflB.sub.Bl budC.sub.Bl gldA.sub.Bl ldhD.sub.Bl::ilvD adhE.sub.Bl::bcd budA.sub.Bl::ilvC.sup.M(L67E,R68F,K75E).
5.3 Exogenous Introduction of the Acetohydroxyacid Isomeroreductase Coding Gene ilvC Derived From Escherichia coli W3110, the Branched-Chain Amino Acid Transporter Gene brnFE Derived From Corynebacterium glutamicum ATCC13869, and the -acetolactate Synthase Gene alsS Derived From Bacillus subtilis 168 to Improve L-valine Synthesis
[0258] The branched-chain amino acid transporter gene brnFE had a sequence length of 1,079 bases, and a nucleotide sequence as shown in SEQ ID NO.11. The -acetolactate synthase gene alsS had a sequence length of 1,713 bases, and a nucleotide sequence as shown in SEQ ID NO.12. The acetohydroxyacid isomeroreductase gene ilvC had a sequence length of 1476 bases, and a nucleotide sequence as shown in SEQ ID NO.14.
5.3.1 Introduction of the Branched-Chain Amino Acid Transporter Gene brnFE Derived From Corynebacterium glutamicum ATCC13869 Into the Site of the Pyruvate Formate Lyase Gene pflB.sub.Bl to Enhance L-valine Efflux
[0259] The steps for constructing and operating a gene replacement vector for inserting the branched-chain amino acid transporter gene brnFE derived from Corynebacterium glutamicum ATCC13869 into the site of the pyruvate formate lyase gene pflB.sub.Bl referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.
[0260] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00040 pflB.sub.Bl::brnFE1-f: (SEQIDNO.230) 5-CCGGGGCCCTGACTTCTCCCATTGCAGCA-3 (SmaI) pflB.sub.Bl::brnFE1-r: (SEQIDNO.231) 5-ATCTCTTGCGTTTTTTGCACTTAAATCCCCCTCTTTTTCA-3 pflB.sub.Bl::brnFE2-f: (SEQIDNO.232) 5-TGAAAAAGAGGGGGATTTAAGTGCAAAAAACGCAAGAGAT-3 pflB.sub.Bl::brnFE2-r: (SEQIDNO.233) 5-CGCGCTCCGCTTATTGCTCGTTAGAAAAGATTCACCAGTC-3 pflB.sub.Bl::brnFE3-f: (SEQIDNO.234) 5-GACTGGTGAATCTTTTCTAACGAGCAATAAGCGGAGCGCG-3 pflB.sub.Bl::brnFE3-r: (SEQIDNO.235) 5-TGCGGATCCGGCATTCCTGTCAGGTTGATATGTT-3 (BamHI)
5.3.2 Introduction of the -acetolactate Synthase Gene alsS Derived From Bacillus subtilis 168 Into the Site of 2,3-butanediol Dehydrogenase Gene budC.sub.Bl to Improve the -acetolactate Synthesis Efficiency and Inhibit 2,3-butanediol Synthesis
[0261] The steps for constructing and operating a gene replacement vector for inserting the -acetolactate synthase gene alsS derived from Bacillus subtilis 168 into the site of 2,3-butanediol dehydrogenase gene budC.sub.Bl referred to the operation steps for inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.
[0262] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00041 budC.sub.Bl::alsS1-f: (SEQIDNO.236) 5-CCGGGGCCCAAAGCGCATGTTTTAAAACC-3 (SmaI) budC.sub.Bl::alsS1-r: (SEQIDNO.237) 5-TCTTTTGTTGCTTTTGTCAAATAAACATCTTCTTTCTATA-3 budC.sub.Bl::alsS2-f: (SEQIDNO.238) 5-TATAGAAAGAAGATGTTTATTTGACAAAAGCAACAAAAGA-3 budC.sub.Bl::alsS2-r: (SEQIDNO.239) 5-TATAGAATATAATTTTAAAACTAGAGAGCTTTCGTTTTCA-3 budC.sub.Bl::alsS3-f: (SEQIDNO.240) 5-TGAAAACGAAAGCTCTCTAGTTTTAAAATTATATTCTATA-3 budC.sub.Bl::alsS3-r: (SEQIDNO.241) 5-TGCGGATCCTTGAAGCGATCAGAAGCTCAGGGAA-3 (BamHI)
5.3.3 Introduction of the Acetohydroxyacid Isomeroreductase Coding Gene ilvC Derived From Escherichia coli W3110 Into the Site of Glycerol Dehydrogenase Gene gldA.sub.Bl to Improve L-valine Synthesis
[0263] The steps for constructing and operating a gene replacement vector for inserting the acetohydroxyacid isomeroreductase gene ilvC derived from Escherichia coli W3110 into the site of glycerol dehydrogenase gene gldA.sub.Bl referred to the operation steps of inserting the gene puDHT into the site of the gene ldhD in the step 1.2.1 of Example 1.2.
[0264] The primers for amplifying the recombinant fragment were designed as follows:
TABLE-US-00042 gldA.sub.Bl::ilvC1-f: (SEQIDNO.242) 5-ATTTAGATCTAACAAGCCGCGTCATTCAAG-3 (BglII) gldA.sub.Bl::ilvC1-r: (SEQIDNO.243) 5-GTATTGAAGTAGTTAGCCATGGTAATTCCCCCTTCACTAT-3 gldA.sub.Bl::ilvC2-f: (SEQIDNO.244) 5-ATAGTGAAGGGGGAATTACCATGGCTAACTACTTCAATAC-3 gldA.sub.Bl::ilvC2-r: (SEQIDNO.245) 5-CGGAAACGGCTTTTCGTCTATTAACCCGCAACAGCAATAC-3 gldA.sub.Bl::ilvC3-f: (SEQIDNO.246) 5-GTATTGCTGTTGCGGGTTAATAGACGAAAAGCCGTTTCCG-3 gldA.sub.Bl::ilvC3-r: (SEQIDNO.247) 5-TACCGTGGATCCGCTTTAAG-3 (BamHI)
[0265] The final resulting recombinant Bacillus licheniformis was named Bacillus licheniformis VBL-6, with the genotype of Bacillus licheniformis 10-1-A pox.sub.Bl pta.sub.Bl frdA.sub.Bl ldhD.sub.Bl::ilvD adhE.sub.Bl::bcd budA.sub.Bl::ilvC.sup.M(L67E,R68F,K75E) pflB.sub.Bl::brnFE budC.sub.Bl::alsS gldA.sub.Bl::ilvC.
5.4 Fed-Batch Fermentation of Engineered Strain of Bacillus licheniformis VBL-6 Using Glucose as a Substrate to Produce L-valine [0266] (1) Plate culture: the recombinant Bacillus licheniformis VBL-6 was streaked onto an LB medium containing agar in a mass-volume ratio of 1.6-1.8% and cultured at 501 C. for 101 hours; [0267] (2) Seed culture: under sterile conditions, a single colony was picked from the plate in the step (1) with a tip of a sterile pipette, then inoculated into 5 mL of an LB liquid medium, and cultured with oscillating in a shaker at 501 C. for 101 hours; and then inoculated into 100 mL of an LB liquid medium at an inoculation amount of 1% (v/v) and cultured with oscillating in a shaker at 501 C. for 101 hours; [0268] (3) 7.5 L fermentation tank culture: under sterile conditions, the bacterial solution obtained in the step (2) was taken and inoculated into a fermentation medium containing 50-60 g/L of glucose at an inoculation amount of 5% (v/v). The fermentation conditions were as follows: a liquid loading volume of 5 L, a culture temperature of 501 C., a culture manner of stirring culture, a stirring rotation speed of 50050 revolutions per minute, a ventilation volume of 1.00.1 vvm, and a pH maintained at 7.00.1 by adjusting with ammonia water, and among the fermentations, samples were taken every 4 hours to detect OD.sub.620nm and the concentration of the glucose in the fermentation sample, and glucose powder was added according to the glucose concentration to maintain the glucose concentration at 40-50 g/L; and at the same time the fermentation sample was subjected to high performance liquid chromatography analysis to determine the concentration of L-valine in the fermentation broth. When glucose was not consumed any more, fermentation was stopped and L-valine was obtained from the fermentation broth.
[0269] The results showed that the recombinant strain B. licheniformis VBL-6 was cultured for 32 h, which consumed 183.0 g/L of glucose, and the concentration of L-valine reached 45.1 g/L, the production intensity reached 1.41 g/L/h, and the yield of L-valine reached 0.246 g/g.
[0270] The methods for detecting the substrate glucose and the product L-valine as well as the formula of the LB medium described in the aforementioned steps were consistent with those in Example 2.
[0271] The formula of the fermentation medium described in the aforementioned step (3) was: 12 g/L of yeast powder, 6.5 g/L of anhydrous sodium acetate (C.sub.2H.sub.3NaO.sub.2), 1 g/L of ammonium citrate (C.sub.6H.sub.17N.sub.3O.sub.7), 2 g/L of K.sub.2HPO.sub.4, 0.25 g/L of MgSO.sub.4.Math.7H.sub.2O, 10 mL of a 100 trace element solution; wherein the formula of the 100 trace element solution is: 2.25 g/L of FeSO.sub.4, 0.75 g/L of ZnSO.sub.4, and 0.38 g/L of MnSO.sub.4.
[0272] The above description of the embodiments is to facilitate those of ordinary skills in the art to understand and use the present invention. It is obvious that those skilled in the art can easily make various modifications to these embodiments and apply the general principles described herein to other embodiments without inventive efforts. Therefore the present invention is not limited to the aforementioned embodiments. The improvements and modifications made by those skilled in the art according to the principle of the present invention without departing from the scope of the present invention should be within the claimed scope of the present invention.