ALL-IN ONE VECTOR FOR CAR AND THERAPEUTIC EFFECTOR MOLECULE
20230142916 · 2023-05-11
Inventors
- Axel Schambach (Hannover, DE)
- Katharina Zimmermann (Hannover, DE)
- Hinrich Abken (Geiselhöring, DE)
- Johannes Kühle (Köln, DE)
Cpc classification
A61K35/17
HUMAN NECESSITIES
C07K2319/33
CHEMISTRY; METALLURGY
A61K35/15
HUMAN NECESSITIES
C07K14/70578
CHEMISTRY; METALLURGY
A61K35/28
HUMAN NECESSITIES
C12N15/86
CHEMISTRY; METALLURGY
International classification
C12N15/86
CHEMISTRY; METALLURGY
A61K35/17
HUMAN NECESSITIES
Abstract
Immune cells containing a nucleic acid construct, also referred to as a vector or viral vector, for use in immune therapy, e.g. for use in the treatment of cancer, or for use in the treatment of autoimmune disease, or for use in the treatment of GvH or HvG. The nucleic acid construct comprises a second expression cassette for constitutive expression of a CAR or a TCR, the binding of which to its target antigen results in signalling and induces the expression of an effector molecule from a first expression cassette, which is contained on the same nucleic acid construct, and which first expression cassette encodes the effector molecule under the control of a promoter inducible by signalling of the CAR or TCR.
Claims
1. Nucleic acid construct for expression of an effector molecule in response to the presence of a target antigen of a chimeric antigen receptor (CAR) or a T-cell receptor (TCR), wherein the nucleic acid construct in one strand comprises a first expression cassette, comprising a first promoter which is inducible by binding of a CAR or TCR to its target antigen to control expression of a coding sequence for the effector molecule, and a second expression cassette encoding the CAR or TCR under the control of a constitutive second promoter, wherein the first expression cassette is arranged in 5′ of the second expression cassette.
2. Nucleic acid construct according to claim 1, wherein the nucleic acid construct is part of a lentiviral vector, of an alpha (α)-retroviral vector or of a gamma (γ)-retroviral vector.
3. Nucleic acid construct according to claim 1, wherein between the first expression cassette and the second expression cassette there is no poly-adenylation signal.
4. Nucleic acid construct according to claim 1, wherein the first promoter is selected from SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, and SEQ ID NO: 31.
5. Nucleic acid construct according claim 1, wherein the constitutive second promoter is selected from a PGK promoter having the nucleotide sequence of nucleotides No. 5158..5673 of SEQ ID NO: 8, an EF-1 alpha promoter having SEQ ID NO: 11, and an SFFV promoter having SEQ ID NO: 10.
6. Nucleic acid construct according to claim 1, wherein a WPRE is arranged at the 3′ end of the CAR encoding sequence.
7. Nucleic acid construct according claim 1, wherein a poly-adenylation signal is contained in an LTR that is arranged in 3′ of the second expression cassette.
8. Nucleic acid construct according to claim 1, wherein the nucleic acid construct only contains a poly-adenylation signal that is contained in an LTR that is arranged in 3′ of the second expression cassette.
9. Nucleic acid construct according to claim 1, wherein a viral packaging signal is arranged in 5′ of the first expression cassette.
10. Nucleic acid construct according to claim 1, wherein the first expression cassette encodes the effector molecule by SEQ ID NO: 4 or by SEQ ID NO: 6.
11. Nucleic acid construct according to claim 1, wherein the arrangement of the first expression cassette and of the second expression cassette is arranged between an LTR and a SIN LTR, between two ITRs, or between recognition sites of a transposase or of a recombinase, or the nucleic acid construct is a non-integrating vector.
12. Nucleic acid construct according to claim 11, wherein the LTR and SIN LTR elements are of lentiviral, of alpha-retroviral, or of gamma-retroviral origin.
13. Nucleic acid construct according to claim 1, wherein for expression in a production cell, the nucleic acid construct is under the control of a strong promoter for driving transcription of the genomic packageable viral mRNA, e.g. selected from the CMV promoter, RSV promoter or HIV and MLV-derived promoters.
14. Nucleic acid construct according to claim 1, wherein the nucleic acid construct is contained in a viral particle or transposable element.
15. Nucleic acid construct according claim 1, wherein the intracytoplasmatic effector domain of the CAR is the intracellular effector domain of DAP12 or DAP10 or the intracytoplasmatic effector domain of the CAR comprises the CD3ζ domain, and in each case optionally an adjacent CD28 or 4-1BB domain.
16. Immune cell, containing a nucleic acid construct according to claim 1 for use in the treatment of cells expressing or presenting the target antigen of the CAR or TCR.
17. Immune cell according to claim 16 for use in the treatment of cells which are virus-infected cells or tumour cells, wherein the CAR is specific for a target antigen which is selected from viral antigens and tumour antigens, wherein the immune cell is a CD8+ (cytotoxic) T-cell, a primary NK-cell or NK T-cell, a NK92-cell, a macrophage, or a dendritic cell.
18. Immune cell according to claim 16 for use in the treatment of an autoimmune disease or for use in the induction of tolerance for a target antigen, wherein the CAR is specific for the target antigen wherein the immune cell is a regulatory CD4+CD25+FOXP3+ regulatory T cell or an alternative immunomodulatory cell type, e.g. selected from NK cells, macrophages, double negative regulatory T cell and a mesenchymal stroma cell.
19. Process for producing an immune cell comprising the steps of providing an immune cell and introducing a nucleic acid construct according to into the immune cell.
20. Process according to claim 19, wherein the immune cell originates from a patient, the nucleic acid construct is introduced into the immune cell in vitro, for producing an immune cell for use in the treatment of cells expressing or presenting the target antigen of the CAR or TCR in the patient.
21. Process for producing viral particles containing a vector according to claim 1, comprising expressing the vector in a mammalian cell and co-expressing the viral structural proteins and replication enzymes (gag-pol), and the retroviral envelope protein (env), and optionally a rev protein.
Description
[0025] The invention is now described in greater detail and with reference to the figures, wherein
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[0039]
[0040] In the Figures, the exemplary CAR, which is specific for GD2, is also designated as GD2CAR.
[0041]
EXAMPLE 1
Expression of Effector and of CAR from Lentiviral Vectors
[0042] As a representative for an effector, the coding sequence for eGFP (enhanced green fluorescent protein, EGFP) or the coding sequence for IL-12 (IL12) was contained in a first expression cassette under the control of the NFATenhsyn promoter (NFATenhsyn) having SEQ ID NO: 1 or under the control of the NFATmIL2 promoter having SEQ ID NO: 2, and the second expression cassette, arranged in 3′ to the first expression cassette, contained a GD2-specific CAR (GD2CAR) under the control of the PGK promoter (PGK, nucleotides 5158..5673 of SEQ ID NO: 8), followed by the WPRE (SEQ ID NO: 15, PRE). A GD2-specific CAR (GD2CAR, e.g. as described by Kailayangiri et al., Oncoimmunology 2017) contained, from its N-terminus to its C-terminus, an antigen-binding domain specific for the exemplary target antigen Ganglioside 2 (GD2), a hinge, a transmembrane domain, a 4-1BB signalling domain fused to a CD3ζ domain. The first and the second expression cassettes were flanked by a 5′ LTR and a 3′ SIN LTR.
[0043] The vector encoding eGFP (EGFP) under the control of the NFATenhsyn promoter is designated pCCL.PPT.NFATenhsyn.EGFP.PGK.CAR.wPRE (SEQ ID NO: 8), wherein the CAR was a GD2-specific CAR.
[0044] The vector which in the alternative to the NFATenhsyn promoter in the first expression cassette contained the promoter having SEQ ID NO: 2 (NFATmIL2) in 5′ to the effector (eGFP) encoding portion was designated pCCL.PPT.NFATmIL2.EGFP.PGK.CAR.wPRE (SEQ ID NO: 20), wherein the CAR was a GD2-specific CAR. An alpha retroviral vector construct having the NFκBmIL2 promoter in the first expression cassette is shown in SEQ ID NO: 26.
[0045] As a further example, a vector having the same elements except for the first expression cassette encoding human IL-12 (IL12human) instead of eGFP was used, this vector was designated pCCL.PPT.NFATenhsyn.humanIL12.PGK.CAR.wPRE (SEQ ID NO: 16) for the first expression cassette containing the NFATenhsyn promoter, wherein the CAR was a GD2-specific CAR. A vector containing the promoter NFATmIL2 of SEQ ID NO: 2 for the first expression cassette was designated pCCL.PPT.NFATmIL2.humanIL12.PGK.CAR.wPRE (SEQ ID NO: 22), wherein the CAR was a GD2-specific CAR. A vector containing the promoter NFκBmIL2 of SEQ ID NO: 31 for the first expression cassette was designated pCCL.PPT.NFκBmIL2.EGFP.PGK.CAR.WPRE (SEQ ID NO: 32), wherein the CAR was the GD2-specific CAR. Herein, pCCL designates a lentiviral transfer vector containing chimeric CMV-HIV 5′ LTRs. In pCCL, the enhancer and promoter of CMV were joined to the R region of HIV-1. The vector constructs designated pCAS are alpha-retroviral vectors having alpha-retroviral LTRs.
[0046] For transduction of lentiviral, gamma- or alpha-retroviral particles containing the vector, primary human T-cells were isolated from human peripheral blood mononuclear cells (PBMC) from buffy coats. The T cells were activated with αCD3/αCD28 antibodies before transduction and were then transduced with the viral particles using RetroNectin (available from TaKaRa) as an enhancer of transduction.
[0047] The primary human T-cells containing one of the vectors were cultivated in RPMI medium containing 10% FCS (fetal calf serum), 1% P/S (penicillin-streptomycin) and IL-2 for approximately 11 days , followed by addition of cells expressing the target antigen, GD2HT1080 cells (HT1080 GD2), or K562 cells (K562 GD2), or the neuroblastoma cell line SH-SY5Y, which naturally expresses GD2.
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[0050] Further, these results show that in primary T-cells that were used as exemplary immune cells the CAR is expressed sufficiently to activate the first promoter of the first expression cassette in the presence of cells bearing its target antigen.
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[0052] For production of lentiviral particles containing the vector, the vector was cloned for transcription under the control of the RSV promoter or the CMV promoter. Viral particles were produced in 293T cells with the vector under the control of the CMV promoter or the RSV promoter and containing helper plasmids encoding VSVg pseudotype coat proteins.
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[0054] NFATenhsyn.EGFP.PGK.CAR.wPRE,
[0055] NFATmIL2.EGFP.PGK.CAR.wPRE,
[0056] NFATenhsyn.humanIL12.PGK.CAR.wPRE (containing the IL12 encoding sequence in the first expression cassette), and
[0057] NFATmIL2.humanIL12.PGK.CAR.wPRE are produced at significantly higher titer under the control of the CMV promoter for transcription in production cells than under control of the RSV promoter.
[0058] Expression of the effector, represented by human IL-18, was tested in primary T-cells transduced with one of the vectors pCCL.PPT.NFATmIL2.humanILl8.PGK.CAR.PRE containing a human IL-18 encoding sequence under the control of the promoter NFATmIL2 of SEQ ID NO: 2, pCCL.PPT.NFATenhsyn.humanILl8.PGK.CAR.PRE (SEQ ID NO: 18) containing the human IL-18 encoding sequence under the control of the promoter NFATenhsyn of SEQ ID NO: 1, wherein the CAR was a GD2-specific CAR, and in T-cells that were not genetically manipulated (untransduced, control).
[0059] Stimulation was done by co-incubation of the genetically manipulated primary T-cells or non-transduced primary T-cells as control in a 10:1 effector to target ratio of primary T-cells with target cells expressing the target antigen GD2, namely HT1080 cells expressing GD2 (HT1080 GD3/GD2,
[0060]
EXAMPLE 2
Regulatory Elements of Gamma Retroviral Vector
[0061] For embodiments, regulatory elements of the vector, especially the second promoter and the arrangement of the first and second expression cassettes in relation to one another were tested in the embodiment of a gamma retroviral vector.
[0062] As an embodiment there was used the arrangement of the first expression cassette and of the second expression cassette such that the first and the second expression cassettes are arranged on opposite strands of a double stranded nucleic acid construct with their 5′-ends adjacent one another and their 3′-ends distant from one another (antisense orientation), and the expression cassettes are between two SIN LTR (SIN). The first expression cassette from 5′ to 3′ consists of the NFATmIL2 representing the first promoter, dscGFP (destabilized copGFP) as a representative of the effector. The second expression cassette from 5′ to 3′ consists of the PGK promoter, the dTomato as a reporter representing the CAR, and a WPRE. This embodiment is schematically shown in
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[0065] The γ-retroviral vectors were transduced into primary T-cells, which after cultivation were stimulated with phosphate buffered saline (PBS, negative control), T-cell activating antibodies anti-CD3 and anti-CD28 (αCD3+αCD28), or with a non-specific antibody (irrelevant antibody, αID (anti-idiotype antibody).
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[0067] Further,
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EXAMPLE 3
Regulatory Elements of Alpha Retroviral Vector
[0069] Regulatory elements of the vector, especially the first promoter and the arrangement of the first and second expression cassettes in relation to one another were tested in the embodiment of an alpha retroviral vector.
[0070] Primary T-cells were transduced with viral particles containing one of the exemplary vectors transferred to the alpha retroviral vector, followed by co-cultivation with GD2-expressing K562 cells for 24 h (
[0071] The vector containing the coding sequence for eGFP as a representative of the effector under the control of the NFATenhsyn promoter was designated pCAS.NFATenhsyn.EGFP.PGK.GD2CAR.wPRE SIN, and expression from this vector was analysed by FACS, using an anti-GD2CAR-PE antibody for detection of the CAR.
EXAMPLE 4
Embodiments of the Vector (First Expression Cassette)
[0072] The following exemplary vectors show that the vector is suitable for introduction into other immune cells besides T cells, e.g. NK92 (
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EXAMPLE 5
Embodiments of the Vector Expressing hIL21 or hTRAIL
[0075] Exemplary embodiments of the vector, which in the first expression cassette encode human interleukin 21 (hIL21) or human tumor necrosis factor-related apoptosis-inducing ligand (hTRAIL) under the control of a CAR inducible promoter, with a second expression cassette arranged in 3′ and in sense orientation and directly adjacent to the first expression cassette. The second expression cassette encodes a CAR having a binding domain that is specific for the G.sub.D2 tumor antigen of glioblastoma cells. As generally preferred, also these nucleic acid constructs are devoid of a poly-adenylation signal between the first expression cassette and the second expression cassette.
[0076] Human primary T-cells were transduced separately with one of the vectors shown in
[0077] For the T-cells that were transduced with the vector encoding hTRAIL as the effector molecule, intracellular TRAIL was analysed from collected cells by ELISA after 2 days, 6 days and after 9 days of co-cultivation with glioblastoma cells. As negative controls, the untransduced (Mock) T-cells alone and T-cells only (i.e. without glioblastoma coculture) transduced with the vector according to the invention with both the first (hTRAIL) and the second (G.sub.D2-CAR) expression cassette were cultured. The ELISA results of cell lysates show that only the T-cells transduced with the vector according to the invention with both the first and the second expression cassettes produced hTRAIL, and only in presence of the glioblastoma cells. Expression of the exemplary effector molecule hTRAIL increased significantly over the time of the cultivation, namely at day 2 10 pg/mL, at day 6 84.7 pg/mL, at day 9212.8 pg/mL. Results are shown in
EXAMPLE 6
Immune Cells Containing the Vector
[0078] Using EGFP as a representative for an effector molecule under the control of the first promoter and a second expression cassette expressing a G.sub.D2-CAR in a nucleic acid construct according to the invention, NK-92 cells were transduced and co-cultivated with patient-derived glioblastoma cells expressing the target antigen G.sub.D2, and as a control without these stimulating cells. In one embodiment, the vector NFATsyn.EGFP-GD2CAR as the first promoter contained the Nasty promoter, in another embodiment, the vector NFATmIL2.EGFP-GD2CAR contained the NFATmIL2 promoter, and in a further embodiment the vector NFκBsyn.EGFP-GD2CAR contained the NFκBsyn promoter as the first promoter. These constructs contained the PGK promoter as the second promoter to constitutively express the CAR, and in 3′ to the second expression cassette, which was arranged sense orientation in 3′ to the first expression cassette, contained a wPRE and in 5′ to the first expression cassette contained a packaging signal, an RRE and a PPT, the construct flanked by SIN LTRs, and except for the different first promoters, these nucleic acid constructs were identical.
[0079] The results are shown in
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[0083] These results show that immune cells containing the vector in the presence of cells that carry the target antigen of the CAR specifically produce the effector molecule that is encoded by the first expression cassette. Further, these results show that in immune cells containing the vector, the NFκBsyn promoter as the first promoter can be contained to generate a stronger expression of the effector molecule, and the NFATenhsyn promoter as the first promoter can be contained to generate a weaker expression of the effector molecule. Furthermore, the results show that the choice of the promoter in the first expression cassette can improve the expression of the inducible gene of interest and is dependent on the immune cell.