Targeted near-infrared imaging by metal-organic frameworks
11644462 · 2023-05-09
Assignee
Inventors
Cpc classification
C07F3/00
CHEMISTRY; METALLURGY
B01J31/2226
PERFORMING OPERATIONS; TRANSPORTING
B01J2531/38
PERFORMING OPERATIONS; TRANSPORTING
C09K2211/182
CHEMISTRY; METALLURGY
B01J31/2239
PERFORMING OPERATIONS; TRANSPORTING
B01J31/2243
PERFORMING OPERATIONS; TRANSPORTING
A61K49/0065
HUMAN NECESSITIES
B01J31/1691
PERFORMING OPERATIONS; TRANSPORTING
C09K11/025
CHEMISTRY; METALLURGY
B01J2531/0216
PERFORMING OPERATIONS; TRANSPORTING
International classification
Abstract
Metal-organic frameworks (MOFs) comprising amines on the organic linker can be used for cell targeting. In particular, primary amine groups represent one of the most versatile chemical moieties for conjugation to biologically relevant molecules, including antibodies and enzymes. Different chemical conjugation schemes can be used to conjugate biological molecules to the amino functionality on the organic linker. For example, carbodiimide chemistry can be used to link a primary amine to available carboxyl groups on the protein. For example, sulfhydryl crosslinking chemistry can be used via Traut's reagent scheme. As a demonstration of the invention, the ability of EpCAM antibody-targeted MOFs to bind to a human epithelial cell line (A549), a common target for imaging studies, was confirmed with confocal microscopy.
Claims
1. A method for targeted near-infrared imaging, comprising: providing a metal-organic framework, comprising at least one metal cluster comprising six or more rare earth metal ions, wherein the at least one metal cluster comprises a first rare earth metal ion and a second rare earth metal ion that is different from the first rare earth metal ion; and a plurality of carboxylic acid-based linkers coordinating with the at least one metal cluster, wherein the carboxylic acid-based linkers further comprise at least one amine group within the linker; and conjugating a biological molecule to the metal-organic framework via the at least one amine group within the linker.
2. The method of claim 1, wherein the step of conjugation uses carbodiimide chemistry to react a carboxylic acid group on the biological molecule with an amine group on the metal-organic framework linker to from a carboxamide bond that links the metal-organic framework to the biological molecule.
3. The method of claim 2, wherein the carbodiimide chemistry comprises adding the metal-organic framework to a solution of ethyl(dimethylaminopropyl) carbodiimide.
4. The method of claim 1, further comprising attaching a target molecule to the conjugated biological molecule.
5. The method of claim 4, wherein the conjugated biological molecule comprises streptavidin and the target molecule comprises a biotinylated molecule.
6. The method of claim 1, wherein the conjugated biological molecule comprises an antibody that binds to a target cell.
7. The method of claim 1, wherein the rare earth metal comprises Nd, Yb, Eu, Y, Ce, Pr, Sm, Gd, Tb, Dy, Ho, Er, Tm, or mixtures thereof.
8. The method of claim 1, wherein the carboxylic acid-based linker comprises an amino-containing di-, tri-, tetra-, or hexacarboxylic acid.
9. The method of claim 8, wherein the carboxylic acid-based linker comprises 2-aminoterephthalic acid.
10. A method for targeted near-infrared imaging, comprising: providing a metal-organic framework, comprising at least one metal cluster comprising one or more rare earth metal ions, and a plurality of carboxylic acid-based linkers coordinating with the at least one metal cluster, wherein the carboxylic acid-based linkers further comprise at least one amine group within the linker; and conjugating a biological molecule to the metal-organic framework via the at least one amine group within the linker by adding the metal-organic framework to a solution of 2-Iminothiolane to convert an amine group to a sulfhydryl group to provide a thiolated metal-organic framework and reacting the sulfhydryl group of the thiolated metal-organic framework with a sulfhydryl group on the biological molecule to form a disulfide bond that links the metal-organic framework to the biological molecule.
11. A method for targeted near-infrared imaging, comprising: providing a metal-organic framework, comprising at least one metal cluster comprising one or more rare earth metal ions, and a plurality of carboxylic acid-based linkers coordinating with the at least one metal cluster, wherein the carboxylic acid-based linkers further comprise at least one amine group within the linker; and conjugating a biological molecule to the metal-organic framework via the at least one amine group within the linker by adding the metal-organic framework to a solution of 2-Iminothiolane to convert an amine group to a sulfhydryl group to provide a thiolated metal-organic framework and reacting the sulfhydryl group of the thiolated metal-organic framework with a maleimide group on the biological molecule to form a thioether bond that links the metal-organic framework to the biological molecule.
12. A method for targeted near-infrared imaging, comprising: providing a metal-organic framework, comprising at least one metal cluster comprising six or more rare earth metal ions, and a plurality of carboxylic acid-based linkers coordinating with the at least one metal cluster, wherein the carboxylic acid-based linkers further comprise at least one amine group within the linker; conjugating a biological molecule to the metal-organic framework via the at least one amine group within the linker; and attaching a target molecule to the conjugated biological molecule, wherein the conjugated biological molecule comprises streptavidin and the target molecule comprises a biotinylated molecule.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) The detailed description will refer to the following drawings, wherein like elements are referred to by like numbers.
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DETAILED DESCRIPTION OF THE INVENTION
(13) MOFs incorporate single metal ions or clusters of metal ions connected by organic linkers that can efficiently sensitize luminescent metal ions. A multifunctional biocompatible MOF materials platform based on rare earth metal ions has been recently reported. See D. F. Sava Gallis et al., ACS Appl. Mater. Interfaces 9, 22268 (2017). These MOF materials are amenable for bioimaging applications, in the visible range and in both NIR windows. Subsequent studies have focused on tuning of particle size with emphasis on increasing quantum yield in these materials systems. These materials have produced the highest quantum yield observed in NIR-emitting MOFs to date. See D. F. Sava Gallis et al., CrystEngComm 20, 5919 (2018).
(14) Primary amine groups represent one of the most versatile chemical moieties for conjugation to biologically relevant molecules, such as fluorescent labels, nucleic acids, peptides and proteins (including antibodies and enzymes), which can have limited or no stability in non-aqueous, low pH, high pH, or high temperature reaction environments. See R. Kazlauskas, R., Chem. Soc. Rev. 47, 9026 (2018); and Y. Le Basle et al., J. Pharm. Sci. 109, 169 (2020). In biologically relevant chemical reactions, primary amines can form chemical bonds with a wide variety of synthetic chemical groups including isothiocyanates, isocyanates, acyl azides, NHS esters, sulfonyl chlorides, aldehydes, glyoxals, epoxides, oxiranes, carbonates, aryl halides, imidoesters, carbodiimides, anhydrides, and fluorophenyl esters. See G. T. Hermanson, Chapter 2—Functional Targets for Bioconjugation, in Bioconjugate Techniques (Third Edition), Hermanson, G. T., Ed. 2013; pp 127-228.
(15) The present invention is directed to a targeted imaging agent, as facilitated by both the facile chemistry of the MOFs, in general, and the highly tunable nature of this materials platform, in particular. For example, the ability to chemically bind antibodies to MOFs is highly relevant for use in a wide variety of assays and as novel targeted imaging agents for biological/medical imaging. See S. Wang et al., Adv. Mater. 30, 1800202 (2018).
(16) The present invention is further directed to MOFs that comprise rare earth metals that form metal clusters that are coordinated with carboxylic acid-based linkers, wherein the carboxylic acid-based linkers comprise one or more amine groups. Examples of rare earth metals that can be used include Nd, Yb, Eu, Y, Ce, Pr, Sm, Gd, Tb, Dy, Ho, Er, and Tm. These rare earth metals will result in distinct emission properties. A variety of carboxylic acid-based linkers can be used to connect the metal clusters, including amino analogs of di-, tri-, tetra-, and hexacarboxylic acids. Exemplary linear dicarboxylic acid linkers include 4,4′-stilbenedicarboxylic acid, 2,2′-dinitro-4,4′-stilbenedicarboxylic acid, 2′2-diamino-4,4′-stilbenedicarboxylic acid, 2,5-dihydroxyterephthalic acid (DOBDC), 4,4′-biphenyl dicarboxylic acid, and 1,4-napthalene dicarboxylic acid. Exemplary tricarboxylic acid linkers include 1,3,5-tris(4-carboxyphenyl)benzene (BTB), 4,4′,4″-5-triazine-2,4,6-triyl-tribenzoic acid (TATB), and 1,3,5-tris(4′-carboxy[1,1′-biphenyl]-4-yl)benzene (TCBB). Exemplary tetracarboxylic acid linkers include 1,2,4,5-tetrakis(4-carboxyphenyl)benzene (TCPB) and 1,3,6,8-tetra(4/carboxyphenyl)pyrene (TBAP). An exemplary hexacarboxylic acid linker includes 1,2,3,4,5,6-hexakis(4′-carboxylato(1,1′-biphenyl)-4-yl)benzene. A linear linker, such as DOBDC, will likely form hexanuclear metal clusters. Tetratopic linkers, such as TCPB, will likely form nonanuclear metal clusters. See U.S. application Ser. No. 15/994,904, filed May 31, 2018, which is incorporated herein by reference.
(17) The invention is further directed to rare-earth MOFs (RE-MOFs) comprising analogs of carboxylic acid-based linkers that further comprise one or more primary amines within the linker that are available for conjugation to biologically relevant molecules. As an example of the invention, 2-aminoterephthalic acid (2-amino-BDC) was used to synthesize the Eu-based analog of the originally reported EuDOBDC material based on a 2,5-dihydroxyterephthalic acid (DOBDC) linker. See D. F. Sava Gallis et al., ACS Appl. Mater. Interfaces 9, 22268 (2017). The exemplary 2-aminoterephthalic acid molecule is shown in
(18) The availability and chemical utility of the primary amine within the organic linker for cell targeting is described below. Amine specific reactions were demonstrated through two different chemical conjugations schemes based on: (i) carbodiimide chemistry to link the primary amine to available carboxyl groups on the protein NeutrAvidin; and (ii) primary amine reaction to add a reactive sulfhydryl group, via the Traut's reagent, to specifically react maleimide-activated NeutrAvidin and to demonstrate sulfhydryl crosslinking chemistry on the MOF. As will be described below, detailed materials characterization was used to probe the phase purity, particle size, photoluminescence properties and functionality of the targeted Eu-2-amino-BDC material.
Eu-2-Amino-BDC Synthesis and Characterization
(19) The synthesis of the Eu-2-amino-BDC material was performed using a microwave-assisted approach. A reaction mixture containing EuCl.sub.3.6H.sub.2O (0.0172 g, 0.047 mmol), 2-aminoterephthalic acid (0.0124 g, 0.068 mmol), 2-fluorobenzoic acid (2-FBA, 0.205 g, 1.463 mmol), and N,N′-dimethylformamide (DMF, 2 mL) was placed in a 10 mL microwave vial with a stir bar and was heated to 175° C. for 40 minutes with a 15s pre-mix. The reaction was then washed 3× in DMF followed by 3× in ethanol.
(20) As one of the most common needs for biological imaging is specific targeting utilizing biological targeting agents such as antibodies, and because antibodies typically require aqueous environments with the presence of salts, the suitability of the Eu-2-amino-BDC material for chemical conjugations for biologically relevant applications was investigated. Since MOFs have been found to have reduced stability in full strength phosphate-buffered saline (PBS), a common biologically relevant buffer used for conjugations, the full strength PBS was diluted with water. See D. Liu et al., Angew. Chem. Int. Ed. 50, 3696 (2011); G. D. Wang et al., Tomography 2, 179 (2016); and D. F. Sava Gallis et al., ACS Appl. Mater. Interfaces 11, 7782 (2019). The Eu-2-amino-BDC particle stability in water and a PBS/water mixture was evaluated for 6 hrs and 1 day. The times were selected to test conditions likely for common conjugation reactions and conjugation plus short-term storage before use. Powder X-ray diffraction patterns showed no change to crystalline structure of the Eu-2-amino-BDC material under the tested conditions.
(21) Additional insights into the particle size and morphology were provided by electron microscopy.
(22) Finally, the material structural characterization was completed with the nitrogen adsorption isotherm measured at 77K, as shown in
Photoluminescent Properties
(23) The photoluminescent properties of the Eu-2-amino-BDC MOF were examined to confirm utility for biological imaging, as shown in
(24) To determine if the spectral properties of the Eu-2-amino-BDC particles could be detected via microscopy, the spectral properties were assessed utilizing spectral scanning on a confocal microscope. The Eu-2-amino-BDC particles, when deposited in cell mounting media and excited by a 405 nm laser, retained their spectral characteristics, showing narrow bands of emission between 575 and 710 nm. Additionally, a broad peak from 425 to 575 nm was observed which was attributed to the linker emission. As laser power can be varied on a confocal microscope and higher laser power can be damaging to cells, the required laser power to visualize the Eu-2-amino-BDC particles was assessed. The spectral characteristics were readily visible with 5% laser power, even with the narrow collection band used for spectral scanning of 5 nm. 5% laser power is within the acceptable range for cell imaging, demonstrating the potential utility of the Eu 2-amino-BDC particles for bioimaging.
Biocompatibility, Antibody Targeting and Bioimaging
(25) After confirmation of the anticipated luminescent properties, the Eu-2-amino-BDC particles were assessed for biocompatibility as measured by alterations in cell viability to mammalian cells. A human epithelial cell line (A549) and a mouse macrophage cell line (RAW 264.7) were chosen as epithelial cells are common targets for imaging studies and macrophages are involved in the clearance of injected particle materials. See G. Song et al., Curr. Rheumatol. Rev. 10, 22 (2014); and S. Park et al., Nat. Rev. Mater. 2, 17104 (2017).
(26) To assess cell viability, A549 were maintained in F-12K+10% fetal bovine serum (FBS, by volume) and RAW 264.7 cells were maintained in DMEM+4 mM L-glutamine+10% FBS (by volume). For cell viability assessment, 5,000 cells were plated per well in 100 μL media in 96 well plates and allowed to adhere overnight. Fresh media containing Eu-2-amino-BDC at varied concentration (0-500 μg/mL) were then prepared. Cell exposure was performed by removing media from the adherent cells, and then replacing it with freshly prepared media containing Eu-2-amino-BDC. Cells were incubated with Eu-2-amino-BDC MOF for 24 or 48 hours at standard cell culture conditions (37° C. and 5% CO.sub.2). After exposure, cell viability was assessed using CellTiter-Glo 2.0 Assay (Promega) utilizing the standard protocol with luminescence measured by a BioTek Synergy Neo2 microplate reader. The cell viability was calculated as a percentage of mock treated sample. Cell viability measurements were done in quadruplicate and graphed as the average and standard deviation.
(27) As shown in
(28) Next, the ability of the linker amino group within the Eu-2-amino-BDC particles to be utilized for protein conjugation was assessed. A number of conjugation methodologies, both covalent and coordinative, have been explored for surface functionalization of MOFs. See S. Wang et al., Adv. Mater. 30, 1800202 (2018). One of the more common methodologies is utilizing carbodiimide chemistries to link proteins, such as streptavidin, tryspin or antibodies, to various MOFs. See P. Ling et al., Anal. Chem. 87, 3957 (2015); X. Qi et al., Chem. Mater. 29, 8052 (2017); Y. Shih et al., ChemPlusChem 77, 982 (2012); and C. van der Wel et al., Langmuir 33, 9803 (2017).
(29) Carbodiimide chemistry links a primary amine group on the MOF linker with a carboxylic acid on a biological molecule (R) to form a carboxamide bond, as shown in
(30) To confirm that the inclusion of the amine moiety within the particle did not alter the ability to utilize this common chemistry, EDC and Sulfo-NHS were used to conjugate the streptavidin variant, NeutrAvidin, to the surface of the Eu-2-amino-BDC particles. As carbodiimide chemistry (i) can utilize any primary amine and any carboxylic acid to create a linkage and (ii) proteins have many primary amines and carboxylic acids, the chemical conjugation can link proteins together which can create large agglomerations of proteins and particles. To prevent this possibility, a 2-step procedure was utilized, where the EDC and Sulfo-NHS were used to activate the amine within the Eu-2-amino-BDC in the absence of the NeutrAvidin protein. The activated Eu-2-amino-BDC particles were then conjugated with the NeutrAvidin.
(31) As a specific example, to conjugate antibodies to Eu-2-amino-BDC via carbodiimide chemistry, 120 μg of Eu-2-amino-BDC was collected via centrifugation (5,000 RCF for 10 min) and resuspended in sterile filtered H.sub.2O at 1 mg/mL. To the Eu-2-amino-BDC MOFs in water, 170 μL of freshly prepared solution of 400 mM 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide hydrochloride (EDC) and 100 mM N-hydroxysulfosuccinimide (Sulfo-NHS) in H.sub.2O was added. The reaction was allowed to proceed for 20 minutes at room temperature with mixing to activate the amines with NHS ester groups. The activated Eu-2-amino-BDC particles were then collected via centrifugation (10,000 RCF for 10 min) and resuspended in sterile filtered H.sub.2O. The centrifugation step was then repeated, and the activated particles were resuspended in 200 μL of sterile filtered H.sub.2O containing 0.12 mg of NeutrAvidin. Reaction was allowed to proceed for 2.5 h at room temperature with mixing to conjugate NeutrAvidin to the activated MOF surface. The avidin-conjugated Eu-2-amino-BDC particles were then collected via centrifugation (10,000 RCF for 10 min) and resuspended in PBS diluted 1:6 with sterile filtered H.sub.2O. After dilution with water, the concentration of salts was NaCl 25.86 mM, Na2HPO.sub.4 0.49 mM and KH2PO.sub.4 0.18 mM in the 1:6 PBS solution. The centrifugation step was then repeated, and the particles were resuspended in 120 μL PBS diluted 1:6 with sterile filtered H.sub.2O. To the avidin-conjugated Eu-2-amino-BDC particles, 10 μg of biotinylated mouse anti-human EpCAM antibody (Invitrogen, clone 187) was added. The particles were incubated with the antibody for 60 min at room temperature to bind the antibodies to the avidin-conjugated particles. The antibody-conjugated Eu-2-amino-BDC particles were then collected via centrifugation (10,000 RCF for 10 min) and resuspended in PBS diluted 1:6 with sterile filtered H.sub.2O. The centrifugation step was then repeated, and the antibody-conjugated particles were resuspended in PBS diluted 1:6 with sterile filtered H.sub.2O at 1 mg/mL and stored at 4° C. until use.
(32) Carbodiimide chemistry can also affect protein and antibody function through blocking or alteration of necessary sites on the protein. By switching the carboxylic acid within the MOF linker to an amine, additional chemical opportunities become available, such as thiolation of the MOF with Traut's reagent to convert the amino group to a sulfhydryl group, as shown in
(33) An advantage of attaching streptavidin and variants to the MOF is that these homo-tetramers have a very high affinity for biotin and will react with any biotinylated substrate. Further, it is easy to get a wide variety of biological molecules biotinylated, including peptides, proteins (including antibodies and enzymes), nucleic acids (including PNA and DNA), and polymers. Once attached to the MOF, streptavidin (SA) can bind up to 4 biotinylated molecules (R), as shown in
(34) As a specific example, to conjugate antibodies to Eu-2-amino-BDC via thiolation chemistry, 120 μg of Eu-2-amino-BDC was collected via centrifugation (5,000 RCF for 10 min) and resuspended in sterile filtered H.sub.2O at 1 mg/mL. To the Eu-2-amino-BDC MOFs in water, 50 μL of freshly prepared 250 mM Traut's reagent (2-iminothiolane) in H.sub.2O was added to convert the surface NH2 groups to SH groups. The reaction was allowed to proceed at room temperature with mixing for 1 h. The thiolated Eu-2-amino-BDC particles were then collected via centrifugation (10,000 RCF for 10 min) and resuspended in H.sub.2O. The centrifugation step was then repeated, and the thiolated particles were resuspended in 120 μL of sterile filtered H.sub.2O. The resuspended Eu-2-amino-BDC particles were added to an Eppendorf tube containing 0.10 mg of maleimide-activated NeutrAvidin. The reaction was allowed to proceed for 2.5 h at room temperature with mixing to conjugate the maleimide-activate NeutrAvidin to the thiolated particles. The avidin-conjugated Eu-2-amino-BDC particles were then collected via centrifugation (10,000 RCF for 10 min) and resuspended in PBS diluted 1:6 with sterile filtered H.sub.2O. Centrifugation step was then repeated, and the particles were resuspended in 120 μL PBS diluted 1:6 with sterile filtered H.sub.2O. To the avidin-conjugated Eu-2-amino-BDC particles, 10 μg of biotinylated mouse anti-human EpCAM antibody (Invitrogen, clone 187) was added. The particles were incubated with the target antibody for 60 min at room temperature to bind the antibodies to the avidin-conjugated particles. The antibody-conjugated Eu-2-amino-BDC particles were then collected via centrifugation (10,000 RCF for 10 min) and resuspended in PBS diluted 1:6 with sterile filtered H.sub.2O. The centrifugation step was then repeated, and the antibody-conjugated particles were resuspended in PBS diluted 1:6 with sterile filtered H.sub.2O at 1 mg/mL and stored at 4° C. until use.
(35) NanoOrange protein quantitation was used to visualize the conjugation of the NeutrAvidin to the Eu-2-amino-BDC particles and the conjugation of the biotinylated EpCAM to the NeutrAvidin, as shown in
(36) To confirm that the association of the proteins, either NeutrAvidin or EpCAM antibody, was the result of chemical conjugation rather than association, the Eu-2-amino-BDC particles were incubated with both proteins and protein association was assessed with NanoOrange. The EpCAM antibody alone showed no association with the Eu-2-amino-BDC MOF and both maleimide-activated and un-activated NeutrAvidin demonstrated greater than 3.5-fold reduction in association without chemical conjugation.
(37) To confirm the presence of antibody on the antibody-conjugated Eu-2-amino-BDC particles, a fluorescently labeled secondary antibody was utilized to detect the presence of the EpCAM antibody on the surface of the Eu-2-amino-BDC particles, as shown in
(38) With both the antibody assay and the protein assay, more antibody is present with the thiolation chemistry. Each NeutrAvidin molecule can bind up to 4 biotinylated antibodies, so the mole ratio of NeutrAvidin to antibody was calculated from the protein assays to determine how many antibodies were bound to NuetrAvidin with each conjugation chemistry. In the case of the carbodiimide chemistry, 1.01 biotinylated antibodies per NeutrAvidin compared to 2.78 antibodies per NeutrAvidin with the thiolation chemistry. In both cases, fewer than the maximal antibodies were attached, likely due to steric hinderance of biotin binding sites due to attachment to a particle surface and density of NeutrAvidin on the surface. However, the carbodiimide chemistry appears to have caused a further decrease in available sites on NeutrAvidin for antibody attachment.
(39) Finally, after confirmation of antibody binding to the surface of the Eu-2-amino-BDC particles, the ability of the particles to target human cells bearing the EpCAM antibody on the surface was tested, as shown in
(40) To determine if the antibody targeting Eu-2-amino-BDC particles were internalized, 3D images were created using confocal microscopy. The 3D images were then sliced in the x, y, and z planes to allow clear visualization. With both conjugation methods, the 3D images demonstrated clear internalization into the A549 epithelial cells.
(41) The present invention has been described as a targeted near-infrared imaging with metal-organic frameworks. It will be understood that the above description is merely illustrative of the applications of the principles of the present invention, the scope of which is to be determined by the claims viewed in light of the specification. Other variants and modifications of the invention will be apparent to those of skill in the art.