METHOD AND APPARATUS FOR SEPARATING IONS BY ION PEAK COMPRESSION OR EXPANSION

Abstract

A method and apparatus for separating ions according to a physicochemical property, such as ion mobility or mass-to-charge-ratio, is disclosed, comprising: repeatedly travelling a transient DC voltage along an ion guide; wherein the transient DC voltage has a first amplitude and first speed whilst it travels along a first region of the ion guide so as to urge ions having different values of said physicochemical property through said first region of the ion guide with different average speeds; and wherein, in a first mode, the transient DC voltage is travelled along a second region of the ion guide that is adjacent to said first region: (i) whilst having a second different amplitude; and/or (ii) at a second different non-zero speed; and/or (iii) at a substantially constant speed but with a different frequency to which it is repeatedly travelled along the first region; so that ions having a given value of said physicochemical property are urged through said second region of the ion guide at a different average speed than they are urged through the first region, thereby causing the ions to be spatially compressed or expanded as they pass from the first region of the ion guide to the second region.

Claims

1. A method of separating ions according to a physicochemical property, comprising: repeatedly travelling a transient DC voltage along an ion guide; wherein the transient DC voltage has a first amplitude and first speed whilst it travels along a first region of the ion guide so as to urge ions having different values of said physicochemical property through said first region of the ion guide with different average speeds; and wherein, in a first mode, the transient DC voltage is travelled along a second region of the ion guide that is adjacent to said first region: (i) whilst having a second different amplitude; and/or (ii) at a second different non-zero speed; and/or (iii) at a substantially constant speed but with a different frequency to which it is repeatedly travelled along the first region; so that ions having a given value of said physicochemical property are urged through said second region of the ion guide at a lower average speed than they are urged through the first region, thereby causing the ions to be spatially compressed as they pass from the first region of the ion guide to the second region.

2. The method of claim 1, wherein the ion guide comprises a plurality of electrodes spaced along its longitudinal axis and each time the transient DC voltage is travelled along the ion guide, the transient DC voltage is successively applied to different electrodes, or is successively applied to different groups of multiple electrodes, along the second region of the ion guide so that the transient DC voltage moves along the second region of the ion guide with a substantially constant speed.

3. The method of claim 1 or 2, wherein the ion guide comprises a plurality of electrodes spaced along its longitudinal axis and each time the transient DC voltage is travelled along the ion guide, the transient DC voltage is successively applied to different electrodes along the second region of the ion guide, or is successively applied to different groups of multiple electrodes along the second region of the ion guide, such that the transient DC voltage passes through the second region; and wherein: (i) the transient DC voltage is applied to each of said different electrodes, or each of said groups of multiple electrodes, for substantially the same period of time, optionally during the entirety of the period that the transient DC voltage is travelled along the second region; and/or (ii) the duration of time between the transient DC voltage being applied to any given one of the electrodes in the second region and the next electrode in the second region that it is applied to is substantially the same whilst the transient DC voltage moves along the second region of the ion guide; and/or (iii) the duration of time between the transient DC voltage being applied to any given one of the groups of electrodes in the second region and the next group of electrodes in the second region that it is applied to is substantially the same whilst the transient DC voltage moves along the second region of the ion guide.

4. The method of any preceding claim, wherein in the first mode the amplitude of the transient DC voltage as it travels through the second region of the ion guide is lower than its amplitude when it travels through the first region of the ion guide so as to perform the step of spatially compressing the ions.

5. The method of any preceding claim, wherein in the first mode the speed of the transient DC voltage along the second region is higher than its speed along the first region so as to cause the step of spatially compressing the ions.

6. The method of any preceding claim, wherein a gas is present in the ion guide with which ions collide when they are urged through the ion guide by the transient DC voltage.

7. The method of any preceding claim, wherein the physicochemical property is ion mobility or mass to charge ratio.

8. The method of any preceding claim, further comprising switching to a second mode in which each time the transient DC voltage travels along the second region of the ion guide it has: a third amplitude; and/or third non-zero speed; and/or different frequency to which it is repeatedly travelled along the second region in the first mode; so that the spatially compressed ions, having any given value of said physicochemical property, are urged through said second region of the ion guide at a higher average speed than they are urged through the second region in the first mode.

9. The method of claim 8, wherein: (i) the third amplitude is higher than the second amplitude and/or the third non-zero speed is lower than the second non-zero speed; and/or (ii) the third amplitude matches the first amplitude and/or the third non-zero speed matches the first non-zero speed; and/or (iii) said different frequency matches the frequency that the transient DC voltage is travelled along the first region.

10. The method of claim 8 or 9, wherein the second mode causes ions to separate according to said physicochemical property within the second region of the ion guide at a higher rate than in the first mode.

11. The method of any one of claims 8-10, comprising performing said first mode until a plurality of groups of ions having different respective values of said physicochemical property have entered the second region of the ion guide and have been spatially compressed, and then switching to the second mode whilst the plurality of groups of ions are still located within the second region of the ion guide.

12. The method of any preceding claim, wherein the transient DC voltage travels along a third region of the ion guide adjacent to and downstream of said second region so as to urge ions having different values of said physicochemical property through said third region with different average speeds.

13. The method of claim 12, wherein the ion guide comprises a fourth region that is adjacent to and downstream of said third region and wherein, in one mode, the transient DC voltage has an amplitude and/or non-zero speed along a fourth region that is different to its amplitude and/or non-zero speed in the third region so that ions having a given value of said physicochemical property are urged through said fourth region of the ion guide at a lower average speed than they are urged through the third region, thereby causing the ions to be spatially compressed as they pass from the third region of the ion guide to the fourth region.

14. The method of any preceding claim, wherein the ion guide is a closed-loop ion guide and the ions are urged around the closed-loop ion guide by the transient DC voltage a plurality of times.

15. The method of any preceding claim, wherein ions are urged along the ion guide such that the same ions pass through the second region multiple times, and wherein the second region is operated in the first mode each of said multiple times such that the ions are spatially compressed as they pass into the second region.

16. A method of separating ions according to a physicochemical property, comprising: repeatedly travelling a transient DC voltage along an ion guide; wherein the transient DC voltage has a first amplitude and first speed whilst it travels along a first region of the ion guide so as to urge ions having different values of said physicochemical property through said first region of the ion guide with different average speeds; and wherein, in a first mode, the transient DC voltage is travelled along a second region of the ion guide that is adjacent to said first region: (i) whilst having a second different amplitude; and/or (ii) at a second different non-zero speed; and/or (iii) at a substantially constant speed but with a different frequency to which it is repeatedly travelled along the first region; so that ions having a given value of said physicochemical property are urged through said second region of the ion guide at a higher average speed than they are urged through the first region, thereby causing a group of ions to be spatially expanded as it passes from the first region of the ion guide to the second region.

17. A method of separating ions according to a physicochemical property, comprising: applying DC voltages to a first region of an ion guide so as to generate a first electric field that is constant along the first region of the ion guide so as to urge ions having different values of said physicochemical property through said first region with different speeds; and applying, in a first mode, DC voltages to a second region of the ion guide that is adjacent to said first region so as to generate a second electric field that is constant along the second region and of a different magnitude to the first electric field so that either: (i) ions having a given value of said physicochemical property are urged through said second region of the ion guide at a lower average speed than they are urged through the first region, thereby causing the ions to be spatially compressed as they pass from the first region of the ion guide to the second region; or (ii) ions having a given value of said physicochemical property are urged through said second region of the ion guide at a higher average speed than they are urged through the first region, thereby causing a group of ions to be spatially expanded as it passes from the first region of the ion guide to the second region.

18. A method of ion mobility or mass spectrometry comprising: performing the method of any preceding claim; and detecting or analysing the separated ions, or ions derived from the separated ions.

19. An ion separator for separating ions according to a physicochemical property, comprising: an ion guide comprising a plurality of electrodes; one or more voltage supply connected to said electrodes for applying transient DC voltages to said electrodes; and electronic circuitry configured to control the one or more voltage supply to successively apply a transient DC voltage to electrodes along the ion guide so as to repeatedly travel a transient DC voltage along the ion guide; wherein the electronic circuitry is configured to control the one or more voltage supply such that the transient DC voltage has a first amplitude and first speed whilst it travels along a first region of the ion guide for urging ions having different values of said physicochemical property through said first region of the ion guide with different average speeds; and wherein the electronic circuitry is configured to control the one or more voltage supply such that, in a first mode, the transient DC voltage is travelled along a second region of the ion guide that is adjacent to said first region: (i) whilst having a second different amplitude; and/or (ii) at a second different non-zero speed; and/or (iii) at a substantially constant speed but with a different frequency to which it is repeatedly travelled along the first region; for urging ions having a given value of said physicochemical property through said second region of the ion guide at a lower average speed than they are urged through the first region, thereby causing the ions to be spatially compressed as they pass from the first region of the ion guide to the second region.

20. An ion separator for separating ions according to a physicochemical property, comprising: an ion guide comprising a plurality of electrodes; one or more voltage supply connected to said electrodes for applying transient DC voltages to said electrodes; and electronic circuitry configured to control the one or more voltage supply to successively apply a transient DC voltage to electrodes along the ion guide so as to repeatedly travel a transient DC voltage along the ion guide; wherein the electronic circuitry is configured to control the one or more voltage supply such that the transient DC voltage has a first amplitude and first speed whilst it travels along a first region of the ion guide for urging ions having different values of said physicochemical property through said first region of the ion guide with different average speeds; and wherein the electronic circuitry is configured to control the one or more voltage supply such that, in a first mode, the transient DC voltage is travelled along a second region of the ion guide that is adjacent to said first region: (i) whilst having a second different amplitude; and/or (ii) at a second different non-zero speed; and/or (iii) at a substantially constant speed but with a different frequency to which it is repeatedly travelled along the first region; for urging ions having a given value of said physicochemical property through said second region of the ion guide at a higher average speed than they are urged through the first region, thereby causing a group of ions to be spatially expanded as it passes from the first region of the ion guide to the second region.

21. An ion separator for separating ions according to a physicochemical property, comprising: an ion guide comprising a plurality of electrodes; one or more voltage supply connected to said electrodes; and electronic circuitry configured to control the one or more voltage supply; wherein the electronic circuitry is configured to control the one or more voltage supply to simultaneously apply different DC voltages to different electrodes in a first region of the ion guide so as to generate a first electric field that is constant along the first region for urging ions having different values of said physicochemical property through said first region with different speeds; and wherein the electronic circuitry is configured to control the one or more voltage supply, in a first mode, to simultaneously apply different DC voltages to different electrodes in a second region of the ion guide that is adjacent to said first region so as to generate a second electric field that is constant along the second region and that is of a different magnitude to the first electric field so that either: (i) ions having a given value of said physicochemical property are urged through said second region of the ion guide at a lower average speed than they are urged through the first region, thereby causing the ions to be spatially compressed as they pass from the first region of the ion guide to the second region; or (ii) ions having a given value of said physicochemical property are urged through said second region of the ion guide at a higher average speed than they are urged through the first region, thereby causing a group of ions to be spatially expanded as it passes from the first region of the ion guide to the second region.

Description

BRIEF DESCRIPTION OF THE DRAWINGS

[0139] Various embodiments will now be described, by way of example only, and with reference to the accompanying drawings in which:

[0140] FIG. 1A shows a schematic view of an ion mobility separator (IMS) according to an embodiment of the present invention, FIG. 1B shows a cross-sectional side view of a portion of the IMS device of FIG. 1A, and FIGS. 1C and 1D show an orthogonal view and a perspective view of the embodiment of FIG. 1A respectively;

[0141] FIGS. 2A-2B show schematic representations of an embodiment during compression of two different ion mobility peaks;

[0142] FIGS. 3-6 show results from a numerical simulation of an embodiment of the ion peak compression technique;

[0143] FIGS. 7 and 8 show results from a numerical simulation of another embodiment of the ion peak compression technique using a different level of compression;

[0144] FIG. 9 shows plots of the mean widths of two ion peaks as a function of separation time in the IMS device for different compression ratios; and

[0145] FIG. 10 shows plots of the peak separation as a function of separation time in the IMS device for different compression ratios.

DETAILED DESCRIPTION

[0146] FIG. 1A shows a schematic view of an ion mobility separator (IMS) according to an embodiment of the present invention. The IMS device 1 comprises a closed-loop ion guide 2 around which the ions are guided in use. The ion guide 2 comprises a plurality of electrodes that act to radially confine the ions to an axial path that extends around the closed-loop ion guide 2. The ion guide 2 also comprises electrodes that urge the ions along the axial length of the ion guide 2. The ion guide 2 is filled with a background gas such that as the ions are urged around the ion guide 2 they collide with the gas molecules and separate according to their ion mobilities through the gas (due to drag). The ions may be urged around the closed-loop ion guide 2 once or multiple times before being extracted through an exit region 4. The ions may be urged around the ion guide 2 by applying one or more transient DC voltage that travels axially along the drift cell 2.

[0147] FIG. 1B shows a cross-sectional side view of a portion of the ion guide 2 of the IMS device of FIG. 1A. FIG. 1B shows an embodiment of an electrode unit arrangement 5 that may be used to confine ions to the axis of the ion guide 2. At a given point along the axial length of the ion guide 2, the path may be defined between two RF electrodes 6 that are spaced apart in a first direction (at the radially inner and outer sides of the ion guide 2) and two DC electrodes 8 that are spaced in a second, preferably orthogonal, direction (at the top and bottom of the ion guide 2). RF voltages are applied to the RF electrodes 6 so as to confine the ions between the RF electrodes 6, in the first direction. DC voltages are applied to the DC electrodes 8 so as to confine the ions between the DC electrodes 8, in the second direction. Alternatively, RF voltages may be applied to the electrodes 8 so as to confine the ions between the electrodes 8, in the second direction.

[0148] The electrode unit 5 is repeated along the axial length of the ion guide 2 such that ions are confined in the ion guide 2 at all points around the ion guide 2, except when ions are ejected from the ion entry/exit region 4, which will be described further below. The electrode units 5 are axially spaced along the ion guiding path and one or more DC voltage may be transiently and successively applied to different electrode units 5 such that a DC potential barrier travels around the ion guide 2 and hence forces the ions around the ion guide 2. The top and bottom sides of the ion guide 2 may be formed from printed circuit boards having the electrodes 8 arranged thereon. Alternatively, or additionally, the radially inner and outer sides of the ion guide 2 may be formed from printed circuit boards having the electrodes 6 arranged thereon.

[0149] Although FIG. 1B shows electrodes 6,8 of certain configurations, it is contemplated that other configurations may be used. For example, different shaped electrodes may be used. Alternatively, rather than providing pairs of electrodes 6,8 in each electrode unit 5, the ion guide 2 may be formed by a series of apertured electrodes arranged with their apertures aligned along the longitudinal path through the ion guide 2, i.e. the ion guide may be an ion tunnel or ion funnel such as a stacked ring set of electrodes. Alternatively, the ion guide may be a segmented multipole rod set, such as a segmented quadrupole, hexapole or octopole rod set. RF voltages may be applied to the electrodes so as to radially confine the ions along the path. For example, AC/RF voltages of different phases may be applied to adjacent electrodes, e.g. alternate electrodes may be supplied with opposite phases of an AC/RF voltage.

[0150] A mode of operation of the IMS device will now be described, by way of example only. Ions may be introduced into the IMS device, e.g. at an ion entrance 4. AC/RF voltages are applied to AC/RF electrodes 6 by an AC/RF voltage supply 7 so as to confine the ions between these electrodes. DC voltages may be applied to DC electrodes 8 by a DC voltage supply 9 so as to confine the ions between these electrodes. Alternatively, in the embodiments in which the electrodes 8 are RF electrodes, an AC/RF voltage supply supplies AC/RF voltages to electrodes 8 so as to confine the ions between these electrodes. The ions are therefore radially confined along the longitudinal path of the ion guide 2. In order to introduce the ions into the ion guide 2, the radial confinement voltages on some of the electrodes in the ion entrance region 4 may be switched off or reduced.

[0151] The DC voltage supply 9 then successively applies a transient DC voltage to the electrodes of different electrode units 5 such that a transient DC potential barrier is travelled along the ion guide 2. For example, the transient DC voltage may be successively applied to the DC electrodes 8 (and optionally the RF electrodes 6) of different electrode units 5. Electronic circuitry 11 is provided to control the timings that the DC voltages are applied to the electrodes. The transient DC potential barrier may urge the ions along as it moves passed them. Ions of different mobilities may be urged by differing amounts by the DC potential barrier as it passes them. One or more such transient DC voltage may be repeatedly travelled around the ion guide 2, causing ions of different mobility to move through the ion guide with different average velocities. The ions are therefore spatially separated according to their mobility. This process may be repeated until the ions have been separated by the desired amount. After this, the ions may be extracted from the IMS device, e.g. at the same location as the ion entrance region 4, or at a different location. In order to extract the ions from the ion guide 2, the radial confinement voltages on some of the electrodes in the ion exit region 4 may be switched off or reduced, or the voltages on the electrodes in this region may be switched so as to provide an electric field that urges the ions in the radial direction and out of the ion guide 2.

[0152] FIG. 1C and FIG. 1D show an orthogonal view and a perspective view of the embodiment of FIG. 1A respectively. The ion guide 2 is arranged inside a chamber 10 that is filled with gas. Ions may be guided into and out of the chamber 10 using RF ion guides 12,14. The RF ion guides 12,14 are also coupled with the ion entry/exit region 4 of the ion guide 2 such that ions can be guided into the ion guide 2 and out of the ion guide 2. In this embodiment, ions are guided into the chamber 10 and into the entry/exit region 4 of the ion guide 2 by input ion guides 12. If the ions are desired to be separated by their ion mobility then the ions are urged in an orthogonal direction to the ion entry direction, by travelling the transient DC voltage around the ion guide 2, so as to drive the ions around the ion guide 2. As the ions pass along the ion path they separate according to their ion mobility through the drift gas that is present in the chamber 10 and hence the ion guide 2. When ions are desired to be extracted from the ion guide 2 they may be ejected in a direction towards the exit RF ion guides 14 (or less desirably in a direction towards the input ion guide 12). The ions are then guided out of the chamber 10 by the exit ion guide 14 (or ion guide 12).

[0153] On the other hand, if ion mobility separation of the ions is not required then ion species can be caused to pass from the input ion guide 12 to the output ion guide 14 directly through the entry/exit region 4 of the drift cell 2 and without passing around the drift cell 2. In other words, the drift cell 2 may be operated in a by-pass mode.

[0154] In a preferred mode of operation, it is possible to extract ions having a desired range of ions mobilities from the ion guide 2. This is achieved by causing ions to traverse around the ion guide 2 so that they separate and then synchronising the activation of one or more ejection voltages at the ion entry/exit region 4 with the time at which the ions of interest are at the entry/exit region 4. The desired ions are therefore ejected from the ion guide 2 and the other ion species remaining in the ion guide 2 can continue to pass through the ion guide 2 and separate according to ion mobility. Alternatively, the remaining ions may be discarded from the ion guide 2, for example, by removal of the RF voltages from the electrodes 6 such that the ions are no longer confined within the ion guide 2.

[0155] The ejected ions having the desired ion mobilities can be immediately transported away from the ion guide 2 to a mass analyser and/or detector. Alternatively, such ions may be trapped in a storage region whilst the next mobility cycle occurs in the ion guide 2 and until more ions of the same ion mobility range are ejected from the ion guide 2 into the storage region. After sufficient mobility cycles have been performed to accumulate the desired number of ions in the storage region, these ions may then be transported to an analyser such as a mass analyser for further analysis, or to a detector. This method may be used to increase the ion signal of the desired ions. Additionally, or alternatively, the desired ions that have been ejected from the ion guide 2 may be fragmented, activated or dissociated and then reintroduced back into the ion guide 2 such that the fragment, activated or product ions can be separated by ion mobility and hence ion mobility analysed.

[0156] As described above, the closed-loop ion guide 2 enables the ion mobility separation path length to be made relatively long, by cycling ions around the ion guide 2 multiple times. This allows the IMS device to have a relatively high ion mobility resolution. However, whilst in principle ions can be driven around the ion guide 2 as many times as desired in order to increase the separation path length, the maximum mobility resolution of the IMS device is still limited by diffusional broadening of the ion mobility peaks. In other words, the spatial length of the ion guide 2 over which ions of any given mobility occupy will increase as the ions travel along the ion guide due to their diffusion. This spatial length increases during the mobility separation until no further useful separation can be obtained. Furthermore, highly diffuse ion peaks can make ion detection challenging and can reduce signal to noise levels.

[0157] Embodiments of the present invention spatially compress such ion peaks within the ion mobility separator, whilst preserving at least a significant proportion of the mobility resolution of the separator. The ability to compress the ion peaks without excessive loss of mobility resolution allows the ions, in principle, to undergo an unlimited number of passes around the closed-loop IMS device whilst still resolving the ions, thus removing the limitation on the attainable mobility resolution.

[0158] FIGS. 2A-2B show schematic representations of an embodiment and how the transient DC voltage 20 is applied so as to affect ions in two different ion mobility peaks. As described above, a transient DC voltage is repeatedly travelled along the ion guide 2, causing ions of different mobilities to travel along the ion guide 2 at different average speeds and hence separate according to their mobility. In the depicted embodiment, the transient DC voltage 20 is travelling to the right, as shown by the arrow. FIG. 2A shows two mobility peaks for ions of two respective mobilities at a first separation time T1 whilst the ions are in a first region 22 of the ion guide 2. In other words, FIG. 2A shows the intensity distribution of two groups of ions having two respective ion mobility values. It can be seen that transient DC voltage causes the two mobility peaks to be partially resolved at time T1. However, as described above, unless measures are taken each peak will broaden due to ion diffusion as the separation process is continued.

[0159] In order to counteract this, one or more properties of the transient DC voltage is varied as the transient DC voltage travels through a second region 24 of the ion guide 2 so that ions are urged through this region 24 by the transient DC voltage at a lower average speed than they were urged through the first region 22 of the ion guide 2. Therefore, ions having a first mobility in the leading peak are initially urged through the first region 22 of the ion guide 2 at a first average speed, but are urged through the second region 24 of the ion guide 2 at a lower average speed. Similarly, ions having a second mobility in the trailing peak are initially urged through the first region 22 of the ion guide 2 at a third average speed, but are urged through the second region 24 of the ion guide at a lower average speed. This causes each of the peaks to be spatially compressed in the direction that the ions are driven along the ion guide, as seen at time T2 in FIG. 2A.

[0160] In the illustrated embodiment, the spatial compression is achieved by the amplitude of the transient DC voltage 20 being reduced in the second region 24 relative to in the first region 22 of the ion guide 2. However, it is contemplated that the average speeds of the ions may be reduced in the second region 24 so as to compress the peaks by altering the transient DC voltages within the second region 24 in other alternative, or additional, ways. For example, the speed of the transient DC voltage through the second region 24 may differ from the speed of the transient DC voltage through the first region 22 in order to compress the peaks. This may be achieved by controlling the DC voltage supply such that the speed of the transient DC voltage through the second region 24 is higher than its speed through the first region 22. Alternatively, or additionally, the frequency or repeat pattern with which the transient DC voltage is repeatedly travelled along the second region 24 may differ to the frequency or repeat pattern with which it is travelled along the first region 22 so as to perform the peak compression. These techniques of compressing the mobility peaks are particularly simple from a technical perspective and are also easily controllable so as to provide the desired level of compression. For example, the amplitude and/or speed and/or frequency of the transient DC voltage travelling through the second region 24 may be selected from a continuum of values in order to provide the desired level of peak compression.

[0161] Referring to FIG. 2B, once the ions of the ion peaks are entirely within the second region 24 of the ion guide 2, at time T3, the properties of the transient DC voltage passing through the second region 24 may be changed such that the average speed of ions in the leading peak and the average speed of the ions in the trailing peak are increased. Accordingly, the amplitude of the transient DC voltage passing through the second region 24 may be increased, and/or the speed of the transient DC voltage passing through the second region 24 may be varied (e.g. decreased), and/or the frequency with which the transient DC voltage is repeatedly travelled along the second region 24 may be changed. The properties of the transient DC voltage passing through the second region 24 may be changed so as to match the properties of the transient DC voltage passing through the first region 22 of the ion guide 2. The transient DC voltage may also be applied to a third region 26 of the ion guide that is downstream of the second region 22 such that the ions continue to be separated by their mobility as they are urged along the ion guide 2 through the third region 26. The properties of the transient DC voltage in the third region 26 may match those in the first region, e.g. in amplitude and/or speed and/or frequency.

[0162] The above-described peak compression technique may be performed within the ion guide 2 as often as is desired. For example, peak compression may performed at the same region 24 of the ion guide 2 (or in a different region) each time that ions pass around the closed-loop ion guide 2. Alternatively, peak compression may be performed multiple times during each cycle that ions pass around the ion guide 2. Alternatively, peak compression may be performed periodically and only after a plurality of cycles around the ion guide 2.

[0163] It is desired that the ion peaks pass entirely into the second region 24, but do not leave it, before the properties of the transient DC voltage (e.g. amplitude and/or speed and/or frequency) repeatedly passing through the second region 24 are switched back so as to match the properties in the first region 22 and third region 26 of the ion guide 2. As such, it is desired that the ion peaks do not become excessively long before compression is performed. The amount of compression of an ion peak that is able to be performed by the second region 24 is related to the ratio of the average velocity of those in the first region 22 to the average velocity of those ions in the second region 24 (during the compression mode of the second region 24). The ion peaks may continue to broaden due to diffusion during compression and hence some of the mobility separation may be lost when undergoing compression (in a manner related to the velocity ratio as above).

[0164] FIGS. 3-6 show results from a numerical simulation of the above described compression technique. In this simulation, the ion guide 2 was modelled as a stacked ring ion guide (i.e. ion tunnel ion guide) along which DC travelling voltage was repeatedly travelled so as to separate the ions according to mobility. The gas pressure within the ion guide was modelled as 2.4 torr. The DC travelling voltage was modelled as having an amplitude of 30V outside of the second region 22 and 7.5V inside the second region 22. The DC travelling voltage was modelled as having a speed of 600 m/s throughout the entire ion guide 2. The two types of ions modelled were reverse peptide ions (GRGDS and SDGRG), z=+1, having collisional cross section values of 208.5 and 205.3 Ang{circumflex over ( )}2 respectively. Although the amplitude of the transient DC voltage in the second region 24 is a factor of four lower than in the first region 22 (i.e. 7.5V as compared to 30V), due to the non-linear relationship between transient DC voltage amplitude and the resulting ion velocity, this leads to a drop in mean drift velocity of the two types of ions from around 35 m/s in the first region 22 of the ion guide to around 2 m/s in the second region 24.

[0165] The ion peaks were modelled as starting 70 mm apart, with a 30 mm standard deviation in their position. The approximate peak separation is defined as the difference between the mean positions of the peaks divided by the mean of the ion packet position standard deviations. This gives a value of 70/30=2.33 as the initial peak separation. The mean position of the leading ion peak (i.e. the most downstream peak) was modelled as being created 522 mm from the upstream end of the second region 24 (which is located at 0 mm FIGS. 3-10).

[0166] FIG. 3 shows plots of the intensities of the reverse peptide ions as a function of position along the ion guide at 12 ms. It can be seen that the leading edge of the ion peak for the SDGRG ions is just starting to enter the second region 24 (the upstream end of which is located at 0 mm). The peak separation at this point in time is 84/31=2.71.

[0167] FIG. 4 shows plots of the intensities of the reverse peptide ions as a function of position along the ion guide at 16.5 ms. At this time it can be see that the peak for the SDGRG ions is almost entirely within the second region 24 (i.e. downstream of 0 mm) and has been spatially compressed in a direction along the ion guide 2. The leading part of the peak for the GRGDS ions is within the second region 24 and has been compressed, but the upstream end of the peak has not yet entered the second region 24.

[0168] FIG. 5 shows plots of the intensities of the reverse peptide ions as a function of position along the ion guide at 21 ms. It can be see that the peaks for both types of ions are now entirely within the second region 24. At this point, the amplitude of the transient DC voltage passing through the second region 24 was modelled as being switched to 30V so as to match the amplitude of the transient DC voltage passing through the first region 22 and third region 26 of the ion guide. At this point in time the peak separation was 5.4/3.7=1.46. It can be seen from FIG. 5 that in this example the second region 24 needed to be around 30 mm long or more in order for both peaks to be within the second region 24 before the amplitude of the transient DC voltage was changed. In general, the minimum length of the second region 24 depends on the initial length and separation of the ion peaks and the compression ratio (i.e. the ratio of the average velocity of those ions in the first region 22 to the average velocity of those ions in the second region 24).

[0169] FIG. 6 shows plots of the intensities of the reverse peptide ions as a function of position along the ion guide at 100 ms, i.e. after 79 ms of mobility separation since the end of the compression. It can be seen that the mean positions of the two peaks are separated by 97.1 mm and the peaks are baseline separated, and that the peak width (standard deviation) is ˜15 mm. Peak separation is therefore 97.1/15=6.5, which is more than double the initial separation, while the peak widths are still only half of their original value. The peaks have therefore been mobility separated whilst counteracting peak broadening and reducing peak width.

[0170] FIGS. 7 and 8 show plots corresponding to those of FIGS. 5 and 6, respectively, except wherein the DC travelling voltage was modelled as having an amplitude of 15V inside the second region 24 (rather than 7.5V). This leads to a drop in mean velocity for the two types of ions from around 35 m/s in the first region 22 to around 8.5 m/s in the second region 24. From FIG. 7 it can be seen that the peak separation at 21 ms is 22.6/8=2.8. The reduced compression ratio (relative to that in FIG. 5) leads to a smaller loss in peak separation, but a lower level of peak compression is obtained. In FIG. 7 the compressed peaks are about twice as large as those in FIG. 5, and require the compression region to have a length of about 90 mm or more. From FIG. 8 it can be seen that the peak separation at 100 ms is 113.7/16.4=6.9.

[0171] The ideal choice of compression ratio may depend on the species being separated, the initial widths of the peaks and the geometry of the system. For example, the example peak widths given above are relatively small relative to the path length of a single cycle around the closed loop IMS device being modelled (˜1 m).

[0172] FIG. 9 shows a plot of the mean standard deviation (widths) of the two ion peaks as a function of separation time in the IMS device when the DC travelling potentials were modelled as having an amplitude of 7.5V inside the second region 24 (i.e. a compression ratio of 0.25), and a plot of the mean standard deviation (widths) of the two ion peaks as a function of separation time in the IMS device when the DC travelling potentials were modelled as having an amplitude of 15V inside the second region 24 (i.e. a compression ratio of 0.5).

[0173] FIG. 10 shows a plot of the peak separation as a function of separation time in the IMS device when the DC travelling potentials were modelled as having an amplitude of 7.5V inside the second region 24 (i.e. a compression ratio of 0.25), and a plot of the peak separation as a function of separation time in the IMS device when the DC travelling potentials were modelled as having an amplitude of 15V inside the second region 24 (i.e. a compression ratio of 0.5).

[0174] It is clear from FIGS. 9-10 that although the technique described above may result in some loss of peak separation during the compression (FIG. 10), the peak width is significantly reduced (FIG. 9). It can be seen from FIG. 10 that in the example having a compression ratio of 0.25 the initial peak separation is recovered by 40 ms, at which time the ion peaks are nearly 6 times smaller than their initial width (FIG. 9).

[0175] Although the present invention has been described with reference to various embodiments, it will be understood by those skilled in the art that various changes in form and detail may be made without departing from the scope of the invention as set forth in the accompanying claims.

[0176] For example, although the ion guide has been described as being a closed-loop ion guide of ovoid shape, the ion guiding path may alternatively be circular, rectangular or another shape. Alternatively, the closed-loop ion guide may have a tortuous ion guiding path, such as a serpentine shaped ion guiding path configured such that ions can loop around the serpentine path multiple times.

[0177] Although ions have been described as being cycled around a closed-loop ion guide multiple times, it is alternatively contemplated that they may be cycled only once, or partially (less than once) around the ion guide.

[0178] Although the ion guide has been described above as being a closed-loop ion guide, it is contemplated that the ion guide need not be closed-looped and may be open-ended. For example, the ion guide may be a linear ion guide. Ions may, or may not, be reflected back and forth along the ion guide.

[0179] Although the second region of the ion guide at which the compression occurs has been described as being in a fixed location, it is alternatively contemplated that the second region may move along the ion guide with time. For example, the location of the second region (and hence peak compression) may track the location of an ion peak along the ion guide.

[0180] It is contemplated that the ion guide has a plurality of regions corresponding to the second region, i.e. multiple peak compression regions.

[0181] The embodiments described above relate to ion mobility separation. However, it is contemplated that the ions may be separated by an alternative physicochemical property, such as mass to charge ratio (or a mixture of mass to charge ratio and mobility separation).

[0182] Although embodiments have been described in which the ion peaks are compressed by changing one or more property of a transient DC voltage as it travels through a second region of the ion guide (relative to the properties in the first region), it is contemplated that alternatively the ion peaks may be spatially expanded by changing one or more property of the transient DC voltage as it travels through the second region of the ion guide (relative to the properties in the first region).

[0183] Although embodiments have been described in which the ion peaks are compressed by changing one or more property of a transient DC voltage as it travels through a second region of the ion guide (relative to the properties in the first region), it is contemplated that the ion peak compression may be performed using linear electric fields rather than travelling a transient DC voltage along the ion guide. For example, the method may comprise: applying DC voltages to a first region of an ion guide so as to generate a first electric field that is constant along the first region of the ion guide so as to urge ions having different values of said physicochemical property through said first region with different speeds; and applying, in a first mode, DC voltages to a second region of the ion guide that is adjacent to said first region so as to generate an electric field along the second region that is constant and of a different magnitude to the first electric field so that either: (i) ions having a given value of said physicochemical property are urged through said second region of the ion guide at a lower average speed than they are urged through the first region, thereby causing the ions to be spatially compressed as they pass from the first region of the ion guide to the second region; or (ii) ions having a given value of said physicochemical property are urged through said second region of the ion guide at a higher average speed than they are urged through the first region, thereby causing a group of ions to be spatially expanded as it passes from the first region of the ion guide to the second region.