Method for the prognosis of survival time of a patient suffering from a solid cancer
09851357 · 2017-12-26
Assignee
- INSERM (INSTITUTE NATIONAL DE LA SANTE ET DE LA RECHERCHE MEDICALE (Paris, FR)
- Universite Paris Descartes (Paris, FR)
- UNIVERSITE PIERRE ET MARIE CURIE (PARIS6) (Paris, FR)
- Assistance Publique Hopitaux De Paris (Paris, FR)
Inventors
- Catherine Sautes-Fridman (Paris, FR)
- Wolf-Herve Fridman (Paris, FR)
- Marie-Caroline Dieu-Nosjean (Paris, FR)
- Jeremy Goc (Paris, FR)
Cpc classification
G01N2800/52
PHYSICS
A61P35/00
HUMAN NECESSITIES
International classification
G01N31/00
PHYSICS
G01N33/53
PHYSICS
Abstract
The present invention relates to an in vitro method for the prognosis of survival of a patient suffering from a solid cancer, comprising the quantification of the cell density of CD8+ cells and DC-LAMP+ dendritic cells present in a tumor tissue sample from said patient, wherein a high density of CD8+ cells and DC-LAMP+ dendritic cells indicates that the patient has a favorable prognosis, a high density of CD8+ cells and a low density of DC-LAMP+ dendritic cells indicates that the patient has a poor prognosis, and a low density of CD8+ cells and DC-LAMP+ dendritic cells indicates that the patient has the worst prognosis.
Claims
1. A method for treating a patient suffering from a solid cancer containing tumor-induced lymphoid structures, wherein said method comprises the following steps: a) quantifying, in a tumor tissue sample from said patient, the cell density of cluster of differentiation 8-positive (CD8+) cells; b) quantifying, in a tumor-induced lymphoid structure from said patient, the cell density of dendritic cell-lysosomal associated membrane protein positive (DC-LAMP+) dendritic cells; c) comparing cell density values obtained at step a) and b) with predetermined reference values for each type of cells at each location; and d) providing the patient with an adjuvant therapy when each of the cell density of CD8+ cells and DC-LAMP+ dendritic cells are lower than said predetermined reference values.
2. The method of claim 1, wherein the patient is a patient with stage I cancer.
3. The method of claim 1, wherein the patient is a patient with stage II or III cancer.
4. The method of claim 1, wherein the tumor tissue sample is selected from the group consisting of (i) a global primary tumor sample as a whole, (ii) a tumor nest sample, and (iii) a stroma sample of the whole tumor section.
5. The method of claim 4, wherein the tumor tissue sample is in a stroma sample of the whole tumor section.
6. The method of claim 1, wherein the solid cancer is a lung cancer, a colorectal cancer or a breast cancer.
7. The method of claim 6, wherein the solid cancer is a lung cancer.
8. The method of claim 7, wherein the solid cancer is a non-small cell lung cancer.
9. A method for treating a patient suffering from a solid cancer containing tumor-induced lymphoid structures, wherein said method comprises the following steps: a) quantifying, in a tumor tissue sample from said patient, the cell density of CD8+ cells; b) quantifying, in a tumor-induced lymphoid structure from said patient, the cell density of DC-LAMP+ dendritic cells; c) comparing cell density values obtained at step a) and b) with predetermined reference values for each type of cells at each location; and d) providing the patient with a cytotoxic agent when each of the cell density of CD8+ cells and DC-LAMP+ dendritic cells are lower than said predetermined reference values.
10. The method of claim 9, wherein the patient is a patient with stage I cancer.
11. The method of claim 9, wherein the patient is a patient with stage II or III cancer.
12. The method of claim 9, wherein the tumor tissue sample is selected from the group consisting of (i) a global primary tumor sample as a whole, (ii) a tumor nest sample and (iii) a stroma sample of the whole tumor section.
13. The method of claim 12, wherein the tumor tissue sample is a stroma sample of the whole tumor section.
14. The method of claim 9, wherein the solid cancer is a lung cancer, a colorectal cancer or a breast cancer.
15. The method of claim 14, wherein the solid cancer is a lung cancer.
16. The method of claim 15, wherein the solid cancer is a non-small cell lung cancer.
Description
FIGURES
(1)
(2) Kaplan-Meier curves of overall survival for 342 NSCLC patients: (A) whole patients, and (B) patients depending on DC/CD8 score. Differences between groups of patients were evaluated using the log-rank test. Log-rank P values were corrected using the formula proposed by Altman et al. (Altman D G, Lausen B, Sauerbrei W, Schumacher M. Dangers of using “optimal” cutpoints in the evaluation of prognostic factors. Medical Statistics Laboratory, Imperial Cancer Research Fund, London, England. J Natl Cancer Inst. 1994 Jun. 1; 86(11):829-35.)
(3)
(4) Kaplan-Meier curves of overall survival for 359 NSCLC patients depending on the pathologic T stage (A), and DC/CD8 score among T1 (B), T2 (C), and T3 (D) stages. Differences between groups of patients were evaluated using the log-rank test. Log-rank P values were corrected using the formula proposed by Altman et al.
(5)
(6) Kaplan-Meier curves of overall survival for 359 NSCLC patients depending on the pathologic N stage (A), and DC/CD8 score among NO (B) and N positive (C) stages. Differences between groups of patients were evaluated using the log-rank test. Log-rank P values were corrected using the formula proposed by Altman et al.
(7)
(8) Kaplan-Meier curves of overall survival for 338 NSCLC patients depending on the emboli (A), and DC/CD8 score among patients without (B) or with emboli (C). Differences between groups of patients were evaluated using the log-rank test. Log-rank P values were corrected using the formula proposed by Altman et al.
(9)
(10) Kaplan-Meier curves of overall survival for 372 NSCLC patients depending on the pathologic TNM stage (A), and DC/CD8 score among stage I (B), stage II (C), and stage III (D). Differences between groups of patients were evaluated using the log-rank test. Log-rank P values were corrected using the formula proposed by Altman et al.
EXAMPLES
Example 1
(11) Patients
(12) Fresh (n=54 patients), frozen (n=28 patients), and paraffin-embedded (n=376 patients) lung tumor samples were obtained from NSCLC patients who underwent a complete surgical resection of their lung tumors at Institut Mutualiste Montsouris or Hotel Dieu Hospital (Paris, France). 376 NSCLC patients (stages I to IV, UICC TNM classification 2009) operated between Jun. 15, 2001 and Nov. 26, 2004 were retrieved retrospectively. The classification of the tumor grade was made following the recommendation of the 7.sup.th edition of the TNM classification of malignant tumors published by the International Union Against Cancer and the American Joint Committee on Cancer (Sobin, Cancer, 2010). Patients who received neo-adjuvant chemotherapy or radiotherapy were ineligible. The observation time of the cohort was the interval between the surgery and the last contact (last follow-up or death of the patient). At the completion of the study, the minimal clinical follow-up was 90 months for the last patient included in the cohort. The data on long-term outcomes were obtained retrospectively by interrogation of municipality registers or the family of patients. A written informed consent was obtained from the patients prior to inclusion in the prospective study. The protocol was approved by the local ethics committee (n.sup.o: 2008-133 and 2012-0612) in application with the article L.1121-1 of French law.
(13) Flow Cytometry
(14) Fresh lung tumor specimens were mechanically dissociated and mononuclear cells were isolated as previously described (De Chaisemartin, L. et al. Cancer Res 71, 6391-6399 (2011)). Mononuclear cells were stained with multiple panels of antibodies conjugated to fluorescent dyes. Briefly, after saturation with 2% human serum, mononuclear cells were incubated with the primary antibodies or appropriate isotype controls for 30 minutes at 4° C. in the dark. Cells were washed and fixed in 0.5% formaldehyde before the analysis on a LSRII or Fortessa cytometer (BD Biosciences). Flow cytometry data were analyzed with the Diva (BD Biosciences) and FlowJo (Tree Star, Inc) softwares.
(15) Immunohistochemistry
(16) For each paraffin-embedded lung tumor, two observers (one expert pathologist and one investigator trained to identify the pathological features of NSCLC) selected the tumor section containing a representative area of tumor with adjacent lung parenchyma, and the highest density of immune cells on hematoxylin and eosin-stained tissue section. Briefly, serial 5-μm tissue sections were deparaffinized, rehydrated, and pretreated in appropriate buffer for antigen retrieval. Then, the sections were incubated with 5% human serum for 30 minutes before adding the appropriate primary antibodies followed by secondary antibodies. Enzymatic activity was revealed, as described (Dieu-Nosjean. et al. J. Clin. Oncol 26, 4410-4417 (2008)). Images were acquired using a Nanozoomer (Hamamatsu) operated with NDPview software.
(17) Method for Cell Quantification
(18) DC-LAMP+ DCs were counted semi-quantitatively (score 0, 1, 2, 3, and 4 for none, very low, weak, intermediate, and high density of positive cells, respectively) in each intermediate-power field (IPF) in the tumoral areas of the entire tissue section and expressed as mean score per IPF, with SEMs calculated. The number of DC-Lamp.sup.+ mature DCs was lower than the number of cells described above, allowing the inventors to realize a quantitative counting. Those stained cells were expressed as mean cells per IPF, with SEMs calculated.
(19) CD8+ cells were enumerated in the tumor nests and the stroma of the whole tumor section with Calopix software, and expressed as an absolute number of positive cells/μm.sup.2 of the areas of interest (Tribvn), with SEMs calculated. Both immunostaining and quantification were reviewed by at least two independent observers.
(20) Statistical Analysis
(21) The inventors used the Mann-Whitney test to compare the density of infiltrating immune cells in the different tumors. Correlations were evaluated by the Spearman test. OS curves were estimated by Kaplan-Meier method and differences between the groups of patients were calculated using the log-rank test. The start of follow-up for OS was the time of surgery. Together with mature DC and CD8+ T cells densities, the following available clinical parameters were tested: TNM stage 2009, T stage, N stage, smoking history, histologic type, adenocarcinoma subtype, emboli, and pleural invasion. With respect to immune cell densities, the “minimum P value” approach was used to determine the cutoff for the best separation of patients referring to their OS outcome (outcome-oriented approach). Because the P values obtained might be overestimated, OS log-rank P values were corrected using the formula proposed by Altman et al. or using 10-fold cross-validations. A P value less than 0.05 was considered statistically significant. Parameters identified at univariate analysis as possibly influencing outcome (P<0.05) were introduced in a multivariate Cox-proportional hazards regression model. All analyses were performed with Prism 5 (GraphPad), Statview (Abacus Systems) and the R. Correlation matrix was done using hierarchical clustering with Genesis software (Institute for Genomics and Bioinformatics, Gratz, Austria; Sturn et al., Bioinformatics, 2002).
(22) 1—High Density of Mature DC Predicts High Levels of CD8.sup.+ T Cell Infiltration in Lung Tumors
(23) The inventors observed a close association between mature DC density with cytotoxic-effector function, the inventors further investigated the relationship between mature DC and CD8.sup.+ T cell infiltration. Since CD8.sup.+ T cells are expected to establish a contact with tumor cells to exert their cytolytic function, the inventors discriminated CD8.sup.+ T cells present in the tumor nests and in the stroma in the following analysis.
(24) In a retrospective series of 376 NSCLC patients (stages I to IV, UICC TNM classification 2009), the inventors quantified stromal CD8.sup.+ T cells (CD8.sub.S), tumor nest CD8.sup.+ T cells (CD8.sub.T) and mature DC-Lamp.sup.+ DC. As previously observed in early-stage lung tumors, the inventors confirmed that mature DC home selectively in the T-cell rich areas of TLS adjacent to PNAd.sup.+ vessels and B cell follicles in all stage lung tumors.
(25) In accordance with the results above, the inventors observed a higher density of both CD8.sub.T and CD8.sub.S cells among DC-Lamp.sup.Hi versus DC-Lamp.sup.Lo tumors (mean=254 versus 138 CD8.sub.T/mm.sup.2, P=0.0003; mean=843 versus 553 CD8.sub.S/mm.sup.2 P<0.0001, respectively). Consequently, substratification of DC-Lamp.sup.Hi and DC-Lamp.sup.Lo patients according to CD8.sub.S and CD8.sub.T cell densities revealed that 84% of DC-Lamp.sup.Hi patients were CD8.sup.Hi in at least one region, and in particular 55% were high in both regions. These proportions were greatly reduced in DC-Lamp.sup.Lo patients with 61% of CD8.sup.Hi in at least one region, and only 33% in both regions. Interestingly, patients with CD8.sub.S.sup.Lo/CD8.sub.T.sup.Hi tumors were rare in both DC-Lamp groups, in accordance with the trafficking of infiltrating T cells from the stroma to the tumor nests. The main differences between DC-Lamp.sup.Hi versus DC-Lamp.sup.Lo patients concerned the percentage of CD8.sub.S.sup.HiCD8.sub.T.sup.Hi and CD8.sub.S.sup.LoCD8.sub.T.sup.Lo patients while the percentages of mix groups (CD8.sub.S.sup.HiCD8.sub.T.sup.Lo and CD8.sub.S.sup.LoCD8.sub.T.sup.Hi) were quite unchanged.
(26) Altogether, these results demonstrate that a high density of mature DC is closely related to a strong CD8.sup.+ T cell infiltration.
(27) 2—Mature DC Density is Associated with Early-Differentiated and Effector-Memory CD8.sup.+ T Cell Infiltration in Human Lung Tumors
(28) The inventors performed large-scale flow cytometry analyses on 54 freshly resected human NSCLC to characterize the immune infiltrate according to the density of DC-Lamp.sup.+ mature DC. The inventors observed a significant higher percentage of total CD3.sup.+, CD3.sup.+CD4.sup.+ and CD3.sup.+CD8.sup.+ T cells, a non-significant trend for CD19.sup.+ B cells and no difference for CD3.sup.−CD56.sup.+ NK cells among total mononuclear cells between patients with a high density of DC-Lamp.sup.+ DC (DC-Lamp.sup.Hi patients) versus patients with a low density of DC-Lamp.sup.+ DC (DC-Lamp.sup.Lo patients). DC-Lamp.sup.Hi tumors had a significantly greater amount of CD62L.sup.+CD4.sup.+ and CD62L.sup.+CD8.sup.+ T cells than DC-Lamp.sup.Lo tumors, in accordance with the selective localization of CD62L.sup.+ T cells inside the TLS. The inventors also observed a significant and concomitant increase of antigen-experienced CD62L.sup.−CD4.sup.+ and CD62L.sup.−CD8.sup.+ T cells, which represent the majority of TIL among total mononuclear cells, between DC-Lamp.sup.Hi versus DC-Lamp.sup.Lo tumors. As compared to DC-Lamp.sup.Lo tumors, DC-Lamp.sup.Hi tumors were more infiltrated by activated CD38.sup.+ or CD69.sup.+ CD8.sup.+ T cells and by the four main subpopulations of effector-memory CD8.sup.+ T cells (CD45RA.sup.−CCR7.sup.−CD27.sup.+ or −CD28.sup.+ or −).
(29) Altogether, these results demonstrate that DC-Lamp.sup.Hi tumors have higher numbers of naïve and early-differentiated T cells associated with TLS, as well as a higher number of activated effector-memory non-TLS T cells, than DC-Lamp.sup.Lo tumors.
(30) 3—Density of TLS DC Allows the Identification of CD8.sup.Hi and CD8.sup.Lo Patients with High Risk of Death
(31) Since the inventors observed that high densities of CD8.sup.+ T cells were detected in both groups of DC-Lamp.sup.Hi and DC-Lamp.sup.Lo patients, the inventors next evaluated the prognostic value of each variable alone and in combination.
(32) The Kaplan-Meier curves indicate that the densities of mature DC (P=9.1×10.sup.−05), CD8.sub.S cells (P=0.0019), and CD8.sub.T cells (P=0.0228) were correlated with longer overall survival (OS).
(33) Since the presence of mature DC and CD8.sup.+ cells in the tumors positively influence the outcome of lung cancer patients, the inventors stratified the patients into 4 groups according to the high or low density of each marker (DC-Lamp.sup.Hi/CD8.sup.Hi, DC-Lamp.sup.Hi/CD8.sup.Lo, DC-Lamp.sup.Lo/CD8.sup.Hi, and DC-Lamp.sup.Lo/CD8.sup.Lo). The inventors observed that the group of patients with DC-Lamp.sup.Hi tumors regardless of the density of CD8.sub.S cells had the lowest risk of death (P=3,4×10.sup.−07, median OS were 92 months for DC-Lamp.sup.Hi/CD8.sub.S.sup.Hi patients and 100 months for DC-Lamp.sup.Hi/CD8.sub.S.sup.Lo patients), as was observed for DC-Lamp.sup.Hi patients. Interestingly, only the DC-Lamp.sup.Hi patients present an improved survival as compared to the whole cohort. In contrast, patients with a low density of both dendritic and CD8.sub.S cells were at highest risk of death (median OS was 22 months) as compared to each immune marker alone (mean OS DC-Lamp.sup.Lo=36 months, mean OS CD8.sub.S.sup.Lo=40 months). Patients with DC-Lamp.sup.Lo/CD8.sub.S.sup.Hi tumors were at an intermediate risk of death (median OS=41 months). Same results were obtained when the analysis was performed on the combination of DC-Lamp with CD8.sub.T cells (data not shown). Additional analyses with 100 repetitions of two-fold cross-validations confirmed the high and significant prognostic value of DC-Lamp/CD8.sub.S score (cross-validated 99/100 tests, median P value=4.7×10.sup.−04). Using Cox multivariate regression analyses, the pTNM stage and DC-Lamp/CD8.sub.S score were the only criteria significantly and independently associated with OS (HR=1.70 and 0.71, and P=2.83×10.sup.−07 and 4.50×10.sup.−07), respectively).
(34) All together, these data demonstrate that DC-Lamp alone is a good marker for the identification of patients with a favorable outcome whereas the combination of CD8 with DC-Lamp allows the identification of patients with the highest risk of death. Finally, the DC-Lamp/CD8.sub.S score and pTNM stage constitute two independent and powerful prognostic factors.
Example 2
(35) Patients
(36) Paraffin-embedded lung tumor samples (n=372 tumors) were obtained from NSCLC patients (stages I to IV, UICC TNM classification 2009), who underwent a complete surgical resection of their lung tumors at Institut Mutualiste Montsouris or Hotel Dieu Hospital (Paris, France). Patients with an Eastern Cooperative Oncology Group performance status (Finkelstein et al., Am J Clin Oncol, 1988)≦1 were eligible. The classification of the tumor grade was made following the recommendation of the 7.sup.th edition of the TNM classification of malignant tumors published by the International Union Against Cancer and the American Joint Committee on Cancer (Sobin, Cancer, 2010). Patients operated between Jun. 15, 2001 and Dec. 31, 2004 were retrieved retrospectively. Patients who received neo-adjuvant chemotherapy or radiotherapy were ineligible. The observation time of the cohort was the interval between the diagnosis and the last contact (last follow-up or death of the patient). At the completion of the study, the minimal clinical follow-up was 90 months for the last patient included in the cohort. The data on long-term outcomes were obtained retrospectively by interrogation of municipality registers. A written informed consent was obtained from the patients prior to inclusion in the prospective study. The protocol was approved by the local ethic committee (n.sup.o: 2008-133 and 2012-0612) and by the Assistance Publique-Hopitaux de Paris (AP-HP), in application with the article L.1121-1 of French law.
(37) 1—Clinico-Pathologic Parameters of the Cohort
(38) A total of 372 patients operated for a NSCLC (all stages) were enrolled in a retrospective study. The overall survival of the whole cohort is shown in
(39) 2—T Stage Better Predicts the Clinical Outcome of NSCLC Patients when Combined with the Density of Mature DC and CD8+ Cells
(40) Pathologic T stage is one of the gold standards in the clinic. As well established, pT was associated with longer survival of NSCLC patients (
(41) Since the presence of mature DC and CD8+ T cells was previously demonstrated to be associated with favorable clinical outcome in NSCLC patients (see example 1), the inventors stratified the patients into 4 groups according to the high/low densities of DC-Lamp+ mature DC and CD8+ stromal T cells (DC CD8_Hi Hi, DC CD8_Hi Lo, DC CD8_Lo Hi, DC CD8_Lo Lo). As previously observed, the percentage of patients with “DC CD8_Hi Lo” tumors was very scarce that made the statistical analysis very difficult with this group, and interpretation very limited.
(42) Among pT1 stage, the Kaplan-Meier curves indicated that the density of the immune cells did not significantly correlate with survival (
(43) Among pT2 stage, the combination DC/CD8 allowed the identification of groups of patients with long-term survival (mean OS for DC CD8_Hi Hi patients was 85 months) and short-term survival (mean OS for DC CD8_Lo Lo patients was 23 months) whereas patients with DC CD8_Lo Hi tumors had the same mean OS than pT2 patients (mean OS=69 and 64 months, respectively). Among pT3 stage, the high density of both DC and CD8+ T cells better predicted a favorable outcome (mean OS=69 months) than low density of DC regardless of the density of CD8+ T cells (mean OS=23 and 15 months for DC CD8_Lo Hi and DC CD8_Lo Lo patients, respectively) or pT3 stage patients (mean OS=24 months). The main difference between pT2 and pT3 stages in terms of survival, was the group of patients with DC CD8_Lo Hi tumors who switched from an intermediate to a high risk of death, respectively and had exactly the same outcome than groups of pT2 and pT3 patients.
(44) All together, these data indicated that the combination of the density of both DC and CTL, and pT stage better predicts the overall survival of NSCLC patients than the gold standard pT stage alone.
(45) 3—Density of Both DC and CTL with the N Stage Better Predict the Clinical Outcome of NSCLC Patients than N Stage Alone
(46) The inventors next investigated the influence of DC/CD8 score on the prognostic value of the N stage (
(47) These results clearly demonstrated that the addition of DC and CD8 with the N stage (as the reference) allow a better discrimination of patients with high- versus low-risk of death, especially in the group of patients with lymph node invasion.
(48) 4—Combination of DC, CD8 and Emboli Better Predicts the Overall Survival than Emboli Alone
(49) Vascular and lymphatic invasion is an earliest sign of tumor cell spreading in the body. This criteria is also evaluated by clinicians as it is associated with poor survival, as shown in
(50) These data show that the combination of DC, CD8 and emboli parameters allow a better stratification of NSCLC patients for survival.
(51) 5—Better Survival of NSCLC Patients Stratified by TNM Stage and DC/CD8 Score
(52) Finally, the inventors tested the power of the prognostic value of the new pTNM classification (2010) with or without the DC/CD8 score (
(53) Altogether, the DC/CD8 score enhances the prognostic value of the TNM stage. Combining DC/CD8 score with the pTNM stage yields a more refined view of the prognosis of patients with a solid cancer with tumor-induced lymphoid structures such as NSCLC.
REFERENCES
(54) Throughout this application, various references describe the state of the art to which this invention pertains. The disclosures of these references are hereby incorporated by reference into the present disclosure.