Method for presymptomatic diagnosis of coeliac disease and gluten sensitivity

Abstract

The invention relates to the use of an immunologically reactive microbial transglutaminase or its immunologically reactive parts or analogues, which are present in a complex with gliadin or its immunologically reactive parts or analogues, for the diagnosis and/or therapy control of coeliac disease or sprue as well as gluten sensitivity, and a kit for determining the diagnosis and/or therapy control of coeliac disease or sprue as well as of gluten sensitivity, by means of the previously mentioned complex.

Claims

1. An in vitro method for diagnosis of a disease and/or monitoring the treatment of the disease comprising: obtaining a body fluid sample from a subject in need of diagnosis and/or monitoring; contacting a complex of (a) a microbial transglutaminase and (b) a gliadin or gliadin peptides with the body fluid sample; and using the complex of microbial transglutaminase and a gliadin or gliadin peptides to identify the presence of antibodies in the body fluid sample which bind to the complex; wherein the subject is identified as having the disease when antibodies which bind to the complex in the body fluid sample are identified, wherein (a) comprises the amino acid sequence of SEQ ID NO: 1, and (b) comprises the amino acid sequence of SEQ ID NO: 2, wherein the disease is selected from the list consisting of coeliac disease, sprue, and gluten sensitivity; and, wherein the antibodies which bind to the complex formed from microbial transglutaminase and gliadin or gliadin peptides are detectable even before antibodies produced against a complex of tissue transglutaminase and gliadin are detectable.

2. The method of claim 1, wherein the antibodies are selected from the group consisting of human IgA, IgG, IgM, and IgE.

3. The method of claim 1, wherein the antibodies are polyclonal antibodies or monoclonal antibodies.

4. The method of claim 1, wherein the antibodies are selected from the group consisting of anti-tTg2 antibodies, anti-tTg/gliadin peptide complex antibodies, anti-DGP antibodies, anti-EMA antibodies, and anti-gliadin antibodies.

5. The method of claim 1, wherein the identifying the presence of antibodies is an immunoassay.

6. The method of claim 5, wherein the immunoassay is selected from the group consisting of ELISA, RIA, and fluorescence immunoassay.

7. The method of claim 1, wherein the identifying the presence of antibodies is performed in a liquid phase.

8. The method of claim 1, wherein the identifying the presence of antibodies is performed in a solid phase.

Description

BRIEF DESCRIPTION OF THE FIGURES

(1) FIG. 1A and FIG. 1B show a paired alignment of the amino acid sequences of microbial transglutaminase (mTG) from Streptomyces mobaraensis (SEQ ID NO: 1) and from human tissue transglutaminase 2 (TG2) (SEQ ID NO: 2) using the “stretcher” algorithm. The sequence comparison was performed by means of the pairwise alignment tool EMBOSS (from EMBL-EBI) that is freely available on the internet.

(2) FIG. 2A and FIG. 2B show a paired alignment of the amino acid sequences of microbial transglutaminase (mTG) from Streptomyces mobaraensis and from human tissue transglutaminase 2 (TG2) using the “needle” algorithm. The sequence comparison was performed by means of the pairwise alignment tool EMBOSS (from EMBL-EBI) that is freely available on the internet.

(3) FIG. 3 shows the results of a competitive assay for serum 1011 (IgA) in the form of a diagram, whereby the absorption is presented in relation to the concentration of competitors. The individual competitors can be obtained from the diagram legend.

(4) FIG. 4 shows the results of a competitive assay for serum 1038 (IgA) in the form of a diagram, whereby the absorption is presented in relation to the concentration of competitors. The individual competitors can be obtained from the diagram legend.

(5) FIG. 5 shows the results of a competitive assay for serum 1011 (IgG) in the form of a diagram, whereby the absorption is presented in relation to the concentration of the competitors. The individual competitors can be obtained from the diagram legend.

(6) FIG. 6 shows the results of a competitive assay for serum 1038 (IgG) in the form of a diagram, whereby the absorption is presented in relation to the concentration of the competitors. The individual competitors can be obtained from the diagram legend.

(7) FIG. 7 shows the results, in the form of a diagram, of a measurement via AF4-MALS for the formation of complexes of gliadin and microbial transglutaminase, whereby the so-called “Rayleigh” ratio is presented in relation to the time. The individual components of the measurement can be obtained from the diagram legend.

(8) FIG. 8 shows the results, in the form of a diagram, of a measurement via AF4-MALS for the formation of complexes of gliadin and microbial transglutaminase, whereby the molar mass in g/mol is presented in relation to time. The individual components of the measurement can be obtained from the diagram legend.

(9) FIG. 9 shows the results, in the form of a diagram, of a measurement via SEC-MALS for the formation of complexes of gliadin and tissue transglutaminase, whereby the so-called “Rayleigh” ratio is presented in relation to time. The individual components of the measurement can be obtained from the diagram legend.

(10) FIG. 10 shows the results, in the form of a diagram, of a measurement via SEC-MALS for the formation of complexes of gliadin and tissue transglutaminase, whereby the molar mass in g/mol is presented in relation to time. The individual components of the measurement can be obtained from the diagram legend.

(11) FIG. 11 shows a schematic sub-division of various detection stages for coeliac disease or sprue. The basis for this is the time lapse in (initial) occurrence of the various diagnostic antibodies.

(12) FIG. 12 shows: −log(P values) of the Wilcoxon-Mann-Whitney tests for verifying the presumed sequence of antibody appearance.

DETAILED DESCRIPTION OF THE INVENTION

(13) Surprisingly, it was discovered that even at an early stage of the previously named diseases, antibodies can be identified which bind to a complex that is formed of microbial transglutaminase and gliadin. This is all the more surprising since microbial transglutaminase has a completely different sequence from human tissue transglutaminase (tTg).

(14) As with the function of tissue transglutaminase, it is also assumed in the generation of the complex used in accordance with the invention that the ratio of deamidation to transamidation is 4:1 and the complex used in accordance with the invention does not necessarily present a molecular species covalently complexed to transglutaminase. The complex is preferably formed by incubation of gliadin peptides and microbial transglutaminase. The individual component mTg does not exhibit any immunological activity in human samples, gliadin peptides are known antigens according to the latest technology and therefore exhibit immunological activity in human patient samples. The immunological activity is, however, significantly higher after complex formation between gliadin peptides and mTg than the sum of the individual components.

(15) As with the complex of tTg2 and gliadin peptides, when the complex is used in accordance with the invention it is also assumed that the distribution of cross-linked gliadin peptides and the enzyme occurs on a stochastic basis, which is confirmed by the light scatter measurements. These complexes contain microbial transglutaminase and display immunological activity that is suitable for intercepting the epitopes from tTg2 with gliadin peptides in competitive assays.

(16) This is demonstrated by competitive assays, which were performed with various patient serums (see FIG. 5).

(17) Embodiments relate to antibodies which bind to the complex used in accordance with the invention consisting of microbial transglutaminase and gliadin peptides or to the immunologically active parts of this complex. Antibodies in terms of this invention include both polyclonal and/or monoclonal antibodies and/or aptamers. An antibody is understood to be a protein which presents one or more specific antigen-binding sites. The expert is, without unreasonable effort, to generate an antibody which specifically binds to the complex used in accordance with the invention consisting of microbial transglutaminase and gliadin peptides or to immunologically active parts of this complex. The corresponding techniques and approaches are familiar to the expert from everyday laboratory practice. The antibodies in accordance with the invention may, for example, also be generated by isolating and cleaning the antibodies present in the serum of coeliac disease or sprue patients or gluten-sensitive patients by means of a complex used in accordance with the invention and hence made accessible. Without being bound, it is presumed that the antibodies bind to a neoepitope in the vicinity of the active centre of the enzyme mTgase. In addition, the complex used in accordance with the invention can, for example, be coupled to a substrate, the loaded substrate is then brought into contact with coeliac disease or sprue patient serum. Non-specifically bound components of the serum are removed and the antibodies specifically bound to the complex used in accordance with the invention are then eluted.

(18) Embodiments relate to the use of the complex of microbial transglutaminase or gliadin or their immunologically active parts for in vitro detection of antibodies that bind to this complex. Use in accordance with this invention is characterised by:

(19) 1. A complex used in accordance with the invention being brought into contact with a sample in vitro; and

(20) 2. Antibodies being detected that are bound to the complex used in accordance with the invention.

(21) For the purposes of this invention, the term “in vitro” is understood to be any environment that is not within a complete organism, for example a human or animal body.

(22) Sample is understood to be a composition that is to be investigated. Preferably, the sample is a biological or medical material, i.e. material that is extracted from an organism or from components of an organism or cells. Before it is used as a sample in the procedure in accordance with the invention, the material may be subjected to further processing steps, for example in order to convert the material to a state in which it is especially suitable for use as a sample for the procedure. Particular preference is given to samples based on material that is obtained from a body fluid or that consists of a body fluid. Preferred body fluids are blood, plasma, serum, lymph fluid, synovial fluid, urine, stool, interstitial fluid, saliva, sweat, spinal fluid, breast milk and/or tear fluid. Particular preference is given to body fluids in which antibodies are to be found in high concentrations.

(23) When used in accordance with the invention, a complex used in accordance with the invention is brought into contact in vitro with a sample to be investigated. The step of bringing into contact is designed to ensure that any antibodies contained in the sample have the possibility to bind to an epitope of the complex used in accordance with the invention. In addition, this step is performed under conditions and in an environment that allow specific antigen-antibody binding. The expert is familiar with suitable conditions. Preferably, these conditions include a liquid environment (optionally also solid substrate materials) and/or bringing into contact at a temperature of >0° C. to <60° C. Bringing into contact should preferably be performed over a period that allows the formation of a specific antigen-antibody binding between the complex used in accordance with the invention and any specific antibodies for the complex contained in the sample of microbial transglutaminase and gliadin or their immunologically active parts.

(24) In a subsequent step of the usage in accordance with the invention, an antibody is identified that is specifically bound to the complex of microbial transglutaminase and gliadin peptides or their immunologically active parts. The proof of the antibody specifically bound to the complex used in accordance with the invention can, for example, be provided by such components of the sample that are not bound to the complex of microbial transglutaminase and gliadin or the immunologically active parts of this complex that are removed after bringing into contact, e.g. by one or more washing, cleaning or isolation steps. A specific proof of the presence antibodies by means of standard methods which are familiar to the expert can then be performed. The proof may thereby be obtained in one or more steps. The agents used for the specific identification of antibodies may, for example, themselves be antibodies. Identification can then, for example, be performed via a colour reaction, which is directly or indirectly mediated or triggered by the agents for identifying the presence of antibodies. For example, antibodies for the identification of specific antibodies can be bound to functional groups or molecules (e.g. enzymes), which are able to trigger or mediate a colour reaction under certain conditions.

(25) When used in accordance with the invention, the complex of microbial transglutaminase and gliadin or their immunologically active parts can be immobilised on a substrate during one, several or all steps. Immobilisation in this regard is understood to be any coupling, binding or other association between complex and substrate with the effect that complex and substrate cannot move independently of each other. Molecules and/or surfaces, for example, can be used as substrates whose form is such that they can bind to the complex reversibly or irreversibly. In addition, substrates and/or gliadins used in accordance with the invention and/or complexes used in accordance with the invention may present functional groups that support and/or enable binding between gliadins and/or complexes and substrates used in accordance with the invention. For example, BSA or surfaces are mentioned as substrate molecules, as they are offered by microparticles, nanoparticles or magnetic beads or surfaces of selected membranes, polymers (e.g. polystyrenes) or microtitre plates or test strips containing such surfaces. The expert is familiar with suitable substrates and options for binding protein complexes and substrates.

(26) In particular, the procedure in accordance with the invention can be performed as an immunoassay procedure, suitable immunoassay procedures are described in “Labor und Diagnose,” p. 756 ff. (ISBN 3980521567)

(27) The procedure in accordance with the invention can preferably be performed as an ELISA procedure (ELISA=enzyme-linked immunosorbent assay), suitable ELISA techniques are for example described in “Labor und Diagnose,” p. 1470 ff. (ISBN 3980521567). To this end, a sample can be brought into contact with a complex used in accordance with the invention that is immobilised on a substrate with, if necessary, the unbound components being partially or basically removed, then an antibody bound or bindable to a functional group is used as proof of the presence of sample antibody bound to the complex used in accordance with the invention. Proof is generally provided by means of a visually detectable reaction.

(28) The antibody for proof may, for example, be specific for antibodies of a certain organism or a certain origin and/or for a certain form of the antibody, preferably for a certain isotype e.g. antibodies of the types IgA, IgM, IgE and/or IgG, particularly preferred for human IgA, IgM, IgE and/or human IgG.

(29) Usage in accordance with the invention can, however, also be performed in other formats, thus, for example, as a RIA (radio-immunoassay), as an immunoassay (e.g. so-called lineblots or ELISAs) or in fluid-based procedures such as HTRF (homogeneous time resolved fluorescence). Usage in accordance with the invention can also take the form of so-called multiplex assays (assays with other biomarkers) in combination in the above-mentioned technical procedures.

(30) This invention is suitable for demonstrating the presence of antibodies against a complex used in accordance with the invention, in particular for demonstrating the presence of antibodies of types IgA, IgG, IgM and/or IgE, preferably for demonstrating the presence of antibodies of human origin.

(31) Usage in accordance with the invention can be applied for diagnosis, in particular for serological diagnosis, preferably for the diagnosis of coeliac disease and/or endemic sprue and/or tropical sprue and/or in the early detection of general gluten intolerance and/or dermatitis herpetiformis.

(32) This invention also includes a kit for the assay or diagnosis and/or therapy control of coeliac disease or sprue as well as of gluten sensitivity, whereby the kit contains a microbial transglutaminase or its immunologically reactive parts or analogues, which are present in a complex with gliadin or its immunologically reactive parts or analogues. In addition, the kit may contain instructions on using the kit and/or on the procedure for using the kit in accordance with the invention.

(33) The kit is preferably in the form of an ELISA or in particular a strip test. This means that the kit used in accordance with the invention includes the complex used in accordance with the invention and, if necessary, other components for the procedure for usage in accordance with the invention in a form that is suitable for the ELISA and/or strip test format. In particular, the kit may include the complex used in accordance with the invention bound to a test strip.

(34) The kit used in accordance with the invention may, if necessary, contain other components for the procedure for usage in accordance with the invention. Such components may, for example, include reaction vessels, filters, solutions, protein-modified enzymes and/or other agents. In particular, the kit in accordance with the invention may contain agents for demonstrating the presence of antibodies, preferably of human antibodies of the IgA, IgM, IgE and/or of the IgG type.

(35) In particular, the kit used in accordance with the invention is suitable for use in diagnosis, preferably in serological diagnosis, with particular preference given to the diagnosis of coeliac disease, sprue, dermatitis herpetiformis and/or gluten sensitivity.

(36) The kit used in accordance with the invention, if necessary, may contain other agents for the procedure for usage in accordance with the invention and/or for classification of the coeliac disease or sprue into specific sub-groups (see above, e.g. silent, latent or established coeliac disease). Such agents may, for example, contain tTg antibodies, tTg/gliadin peptide complex antibodies, DGP antibodies, gliadin antibodies etc.

EXAMPLES

Amino Acid Sequence Alignments

(37) The intention is to demonstrate that the microbial transglutaminase (mTG) from Streptomyces mobaraensis and the human transglutaminase (TG2) have few similarities at the sequence level.

(38) For this purpose, the sequences Q5UCB5 (mTG) (SEG ID NO: 1) and P21980 (TG2) (SEQ ID NO: 2) available in the Uniprot database were compared. A sequence comparison was performed by means of the “pairwise alignment tool” EMBOSS available on the internet. The algorithms “needle” or “stretcher” were used.

(39) As can be seen from FIG. 1A, FIG. 1B, FIG. 2A, and FIG. 2B, there is almost no homology between the sequences used, regardless of which algorithm is used. When the stretcher algorithm is used, the paired alignment between microbial transglutaminase from Streptomyces mobaraensis and human tissue transglutaminase has a similarity of only 23.6% and an identity of 14.3%, and when the “needle” algorithm is used, a similarity of only 15.3% and an identity of 9.2%.

Competitive Assays

(40) Competitive assays determine whether there is a relationship between the formed complex of human tissue transglutaminase with gliadin and the complex used in accordance with the invention. To this end, patient serums that contain the antibodies against the complex of tissue transglutaminase and gliadin mixed with the individual components and with the complex, formed in accordance with the invention, of microbial transglutaminase and gliadin and deposited on a microtitre plate coated with a complex of tissue transglutaminase and gliadin. Via the intensity of a colour reaction, it can now be determined how strongly each component contributes to the test result, i.e. which reactive fraction of the antibodies binds to the respective components. If the antibodies not only bind to the complex of human tissue transglutaminase and gliadin, but also to the other competitors, these antibodies are captured (and can therefore no longer bind to the microtitre plate) and the colour reaction is less in comparison to the reference value. In order to obtain a reference value, the patient serum is directly applied to the plate coated with the complex of human tissue transglutaminase and gliadin.

(41) In order to perform the competitive assay, an AESKUKLISA tTg New Generation Kit from AESKU.Diagnostics was used, which is suitable for a separate quantitative and qualitative assay of IgA and/or IgG antibodies, targeted at a complex of tissue transglutaminase and gliadin, in human serums.

(42) Concentrations of Individual Components:

(43) The components mTG, DGP, tTG and gliadin were used in concentrations of 0; 0.125; 0.25; 0.5; 0.75 and 1.0 μg/ml (duplicate assay of the respective concentration was performed).

(44) Each serum was incubated with the respective competitor and then measured in the ELISA standard as per the manufacturer's instructions.

(45) Serums Used:

(46) Coeliac disease serums with the serum numbers 1011, 1020, 1038 and 1045 were used. The serums 1011 and 1038 were prediluted 1:10 with a blood donor serum and then once again prediluted 1:100 with a sample buffer.

(47) The degree of competition was calculated in comparison to a reference value for each serum. The reference value was set to 100% and diagrams generated with the aid of Microsoft Office Excel.

(48) Results of the Competitive Assay IgA and IgG:

(49) It is apparent that antibodies are absorbed by the individual components, see serums 1011 and 1038 (FIG. 3 and FIG. 4 for IgA and FIG. 5 and FIG. 6 for IgG). In all four cases, the addition of the components DGP, gliadin and mTg has hardly any influence on the colour intensity of the reaction, so that it may be assumed that the antibodies in the patient serums are exclusively directed against the complex used in accordance with the invention.

Measurements of the Formation of Complexes Via AF4/SEC MALS

(50) The respective complexes were separated via a size exclusion chromatography (SEC) column or via asymmetrical flow field-flow fractionation AF4 and analysed via multi-angle light scattering (MALS).

(51) The measurement using MALS enables a comparison of the mass distribution contained in a sample. With the aid of the MALS mass comparison, the conversion of the individual component gliadin with the respective transglutaminase (mTg or tTg) to a complex can be demonstrated.

(52) Addition of mTg results in significantly higher masses in comparison to gliadin without mTg

ELISA Analysis of Coeliac Disease Patient Serums

(53) The used coeliac disease serums (N=82) as well as 33 control serums (blood donor) were tested with the following AESKU kits and on self-coated plates.

(54) The serums were tested for IgA and for IgG antibodies against the individual components or complexes.

(55) Aesku Kits: AESKULISA Glia AESKULISA DGP AESKULISA tTg AESKULISA tTg New Generation

(56) Self-Coated Plates: Microbial transglutaminase Gliadin in water Gliadin with microbial transglutaminase Purified mTg-gliadin complex

(57) The results of the ELISA are summarised in Table 1. The concentration of the protein solutions were determined by means of the OD at 280 nm (assumption: 1 OD=1 μg/ml).

(58) TABLE-US-00002 TABLE 1 Excerpts from the ROC analysis. Marker AUC Sensitivity Specificity AESKULISA 0.95 +/− 0.02 0.87 +/− 0.04 0.93 +/− 0.03 tTg-G New Generation AESKULISA 0.671 +/− 0.042 0.65 +/− 0.06 0.89 +/− 0.04 GliaG mTg-GP 0.89 +/− 0.03 0.91 +/− 0.03 1.00 +/− 0.00 complex IgG tTg-IgG ELISA 0.81 +/− 0.04  0.6 +/− 0.06 0.94 +/− 0.03 mTg-IgG ELISA cannot be determined AESKULISA DGP 0.73 +/− 0.04 0.58 +/− 0.06 0.79 +/− 0.05 IgG AESKULISA 0.95 +/− 0.02 0.89 +/− 0.04 0.93 +/− 0.03 tTg A New Generation AESKULISA 0.77 +/− 0.04 0.67 +/− 0.06 0.81 +/− 0.04 Glia A mTg complex IgA 0.90 +/− 0.03  0.69 +/− 0.054 1.00 +/− 0.00 tTg-IgA ELISA 0.87 +/− 0.03 0.62 +/− 0.06 1.00 +/− 0.00 mTg-IgA ELISA cannot be determined AESKULISA DGP 0.68 +/− 0.04 0.41 +/− 0.06 0.96 +/− 0.02 IgA

(59) Since no transformation into other units is possible for mTg ELISAs (no established tests), this analysis is based on the optical densities of the assays, whereby the sensitivity/specificity ratio has been optimised so that its sum is maximised (Youden index).

(60) Due to the selection bias, these values deviate from those of a clinical study.

(61) As Table 1 shows, the mTg complex ELISAs perform differently to the other parameters and also differently to the tTG-gliadin complex ELISAs. It should be noted, that it is not possible to distinguish from pure mTg with the antibodies. It should be noted that although the results of the tTG2-gliadin complex ELISAs were significantly better than for the mTg-gliadin complex ELISAs, these were in turn better than the remaining ELISAs—although the patients hardly respond to the mTg directly. As previously explained, an epitope similarity between tTG2-gliadin complexes and mTg-gliadin complexes is to be assumed—however, not necessarily epitope equivalence.

(62) If the complex used in accordance with the invention produces the first immunopotent epitope for a coeliac disorder, then molecular epitope mimicry can result in the patient's immune system recruiting antibodies against the body's own tissue transglutaminase in the complex with gliadin and subsequently—as a consequence of secondary molecular epitope mimicry—against epitopes which also recruit tissue transglutaminase, gliadin, gliadin peptides or deamidated derivatives (DGPs=deamidated gliadin peptides). Coeliac disease patients do not appear to form their antibody titres against certain epitopes at any time, but it seems that transient transitions from one of the described epitopes is formed which perfectly characterises the progression of the disease while retaining “residual titres”, since a gluten-free diet can result in a lower titre of the established antibodies.

(63) In order to demonstrate the above, a multiple Wilcoxon-Mann-Whitney test (also U test) was conducted as a rank sum test on an existing serum panel (75 independent coeliac disease patient samples of various nationalities) and the P values presented as a measure of the differences of the rank distribution. Here, the P value—in accordance with the Manhattan plot—is logarithmised and its sign inverted (the more pronounced the rank sum difference of the parameter pairs, the higher the column), whereby the horizontal column corresponds to the Bonferroni significance threshold, as the most conservative possible correction for multiple testing.

(64) In accordance with the above facts, it can be assumed that analogue epitope pairs (e.g. anti-gliadin antibodies vs. DGP antibodies or anti-mTgase-gliadin peptide complex antibodies vs. anti-human tissue transglutaminase complex antibodies) will exhibit more even rank sums (smaller P-value columns) than epitopes, whose titre magnitudes correlate with the progression of the disease (e.g. anti-mTgase-gliadin peptide complex antibodies vs. anti-gliadin antibodies).

(65) Detection of these antibodies enables coeliac disease or sprue patients to be identified, who cannot be identified using one or more other serological diagnostic tests for coeliac disease or sprue. This means that with usage in accordance with the invention, those patients who were previously classified as false negative can be identified. In our panel of 75 coeliac-positive serums, this concerned 8 serums with an anti-tTg-gliadin complex antibody test, 25 serums in the anti-gliadin antibody test, 44 serums in the anti-DGP antibody test and 28 serums in the anti-tTg antibody test in relation to the IgA antibodies. The diagnostic gap that can thus be closed is therefore highly significant (P-value of 7.4*10e-8 in a Cochrane-Armitage trend test on the trend of the complex used in accordance with the invention). With the introduction of the kit referred to in the claim, an even greater gap can be closed, since the analysed serum panel is subject to a selective bias, which leans towards patients who had in any case been identified as positive.

(66) The discovery of the complex used in accordance with the invention is all the more surprising since virtually no homology exists between microbial transglutaminase and tissue transglutaminase.