CONSTRUCTION OF DIAGNOSTIC IMAGES FROM MRI DATA ACQUIRED IN AN INHOMOGENEOUS POLARIZING MAGNETIC FIELD
20170363703 · 2017-12-21
Inventors
Cpc classification
G01R33/445
PHYSICS
International classification
G01R33/565
PHYSICS
G01R33/24
PHYSICS
Abstract
According to one aspect of the invention, there is provided a method of constructing a diagnostic image of a sample from MRI data acquired while subjecting the sample to an inhomogeneous polarizing magnetic field, the method comprising the steps of: i) deriving an estimate of the spatial map of the inhomogeneous polarizing magnetic field; ii) acquiring the MRI data; iii) processing the estimate of the spatial map with the acquired MRI data to obtain an estimate of the diagnostic image; iv) calculating an acquired data error in response to the estimates of the spatial map and the diagnostic image; v) updating the estimate of the spatial map in response to the calculated error; and repeating the steps iii) to v) to improve the estimate of the spatial map of the earlier iteration and the estimate of the diagnostic image, wherein the repetition is stopped when the calculated error of the latest iteration reaches within a tolerance range and wherein the estimate of the diagnostic image from the latest iteration becomes the diagnostic image of the sample.
Claims
1. A method of constructing a diagnostic image of a sample from MRI data acquired while subjecting the sample to an inhomogeneous polarizing magnetic field, the method comprising the steps of: i) deriving an estimate of the spatial map of the inhomogeneous polarizing magnetic field; ii) acquiring the MRI data; iii) processing the estimate of the spatial map with the acquired MRI data to obtain an estimate of the diagnostic image; iv) calculating an acquired data error in response to the estimates of the spatial map and the diagnostic image; v) updating the estimate of the spatial map in response to the calculated error; and repeating the steps iii) to v) to improve the estimate of the spatial map of the earlier iteration and the estimate of the diagnostic image, wherein the repetition is stopped when the calculated error of the latest iteration reaches within a tolerance range and wherein the estimate of the diagnostic image from the latest iteration becomes the diagnostic image of the sample.
2. The method of claim 1, wherein step iii) is performed with an algorithm which comprises the use of a mathematic approximation function.
3. The method of claim 2, wherein the mathematic approximation function is based on a Taylor series.
4. The method of claim 1, wherein the tolerance range is less than 1 Hz.
5. The method of claim 1, wherein the estimate of the spatial map of step i) is derived with the sample absent from the inhomogeneous polarizing magnetic field.
6. The method of claim 1, wherein the spatial map of the inhomogeneous polarizing magnetic field, used for step i) is obtained from a magnetic field detector measurement of the inhomogeneous polarizing magnetic field to which the sample is subjected or an imaging process that employs an imaging phantom.
7. The method of claim 1, wherein step iv) uses data obtained from all spatial locations of both the estimate of the spatial map and the MRI data obtained from the sample.
8. The method of claim 1, wherein step iv) comprises comparing data from the estimate of the diagnostic image obtained from the estimate of the spatial map and the MRI data measured from the sample, wherein a voxel of the estimate of the diagnostic image is created from data used in the comparison.
9. The method of claim 1, wherein the MRI data measured from the sample is obtained from exciting the sample using RF pulses.
10. The method of claim 1, wherein the MRI data measured from the sample is measured at a sampling rate determined by the bandwidth of the inhomogeneous polarizing magnetic field.
11. The method of claim 1, wherein step ii) comprises acquiring the MRI data at different time intervals.
12. (canceled)
13. An MRI data processing server for constructing a diagnostic image of a sample from MRI data acquired while subjecting the sample to an inhomogeneous polarizing magnetic field, the data processing server comprising: at least one processor; and at least one memory including computer program code; the at least one memory and the computer program code configured to, with the at least one processor, cause the server at least to: i) derive an estimate of the spatial map of the inhomogeneous polarizing magnetic field; ii) process the estimate of the spatial map with the acquired MRI data to obtain an estimate of the diagnostic image; iii) calculate an acquired data error in response to the estimates of the spatial map and the diagnostic image; iv) update the estimate of the spatial map in response to the calculated error; and repeat ii) to iv) to improve the estimate of the spatial map of the earlier iteration and the estimate of the diagnostic image, wherein the repetition is stopped when the calculated error of the latest iteration reaches within a tolerance range and wherein the estimate of the diagnostic image from the latest iteration becomes the diagnostic image of the sample.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0013] Example embodiments of the invention will be better understood and readily apparent to one of ordinary skill in the art from the following written description, by way of example only, and in conjunction with the drawings. The drawings are not necessarily to scale, emphasis instead generally being placed upon illustrating the principles of the invention, in which:
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DETAILED DESCRIPTION
[0022] In the following description, various embodiments are described with reference to the drawings, where like reference characters generally refer to the same parts throughout the different views.
[0023]
[0024] The method 100 constructs a diagnostic image of a sample from MRI data acquired while subjecting the sample to an inhomogeneous polarizing magnetic field through the use of steps 102, 104, 106, 108 and 110 as described below.
[0025] In step 102, an estimate of the spatial map of the inhomogeneous polarizing magnetic field is derived. That is, an estimate of the inhomogeneous polarizing magnetic field B.sub.0, at the spatial locations where the sample that is to be imaged (interchangeably referred to as “imaging sample”), is obtained. This estimate of the inhomogeneous polarizing magnetic B.sub.0 field may be obtained through a field mapping process that employs a magnetic field camera. When such a field mapping process is performed, the estimate of the spatial map may be derived with the sample absent from the inhomogeneous polarizing magnetic field. Alternatively, this spatial map of the inhomogeneous polarizing magnetic B.sub.0 field may be obtained using an imaging process that employs an imaging phantom (plastic structure containing water), such as a homogeneous phantom. The purpose of the homogeneous phantom is to provide a control sample, since the perturbations caused by this control sample can be estimated precisely. Such control samples are used in all state of the art MRI scanners for calibrating MRI magnets. In one embodiment, the homogeneous phantom is realized using a plastic structure that only contains water. In another embodiment, the phantom may be another plastic structure with an intricate shape that contains water, where this intricate shape is used to simulate fine detail. This map of the B.sub.0 field serves as an initial estimate, to initiate the process of estimating a final accurate image of the sample that is to be imaged. The perturbation of the inhomogeneous polarizing magnetic field B.sub.0 that is caused by the imaging sample typically results in the actual B.sub.0 field map deviating from this initial estimate. This difference is compensated for in the subsequent steps of the method 100.
[0026] Importantly, the method 100 can output images of diagnostic quality despite the Imaging process employing a highly inhomogeneous magnetic B.sub.0. From a hardware perspective, this enables a relaxation in the design requirements for the polarizing magnets that are used in tandem with the method 100, when compared to polarizing magnets that are required to create a relatively uniform B.sub.0 field for conventional MRI. Accordingly, an alteration of the structure of an MRI scanner is enabled, where the magnets employed can now be lightweight, compact and inexpensive.
[0027] In step 104, the MRI data is acquired, such as in k-space. K-space is the Fourier transform of acquired MRI data. Complex values are sampled during the acquiring of the MRI data under a controlled sequence of RF (radiofrequency) and gradient pulses (described later with reference to
[0028] In step 106, an initial estimate of a diagnostic image of the sample is obtained by using the acquired k-space data of step 104 and the estimate of the spatial map from step 102. This initial estimate of the image is subsequently updated through several iterations which leads to the final diagnostic image of the sample. In one implementation, the processing of step 106 involves using the acquired k-space data along with the estimate of the spatial map to construct an imaging plane and/or volume.
[0029] In step 108, the estimated spatial map and diagnostic image are used to obtain a k-space dataset. Next, the difference between this k-space dataset and the acquired k-space data is computed to estimate the error in k-space. In this manner, an acquired data error is obtained in response to the estimates of the spatial map and the diagnostic image
[0030] In step 110, the estimate of the spatial map of step 102 is updated in response to the acquired data error of step 108, i.e. the computed error in k-space.
[0031] Step 112 then repeats the steps 106, 108 and 110 to employ the updated estimate of the spatial map from the earlier iteration with the acquired k-space data to obtain a new estimate the diagnostic image. This repetition of steps 106, 108 and 110 is stopped when the calculated error in the B.sub.0 map from the latest iteration reaches within a tolerance range. The estimate of the diagnostic image from the latest iteration then becomes the final diagnostic image of the sample.
[0032] The steps 106, 108 and 110, are repeatedly executed to improve on the initial inhomogeneous polarizing magnetic field B.sub.0 estimate of step 102. This is necessary as the imaging sample always perturbs the B.sub.0 field in which it is placed in a manner that is unknown apriori. Each iteration of steps 106. 108 and 110 improves the estimate of the initial map of the B.sub.0 field by estimating the perturbation caused by the imaging sample and consequently improves the spatial map of the B.sub.0 field. This in turn results in an incremental correction of the geometrically distorted diagnostic image after each iteration. In this manner, the diagnostic image that is formed in step 106, after an iteration, is a more accurate reconstruction of the acquired MRI data of step 104.
[0033] The iterative application of steps 106, 108 and 110 facilitates the production of MR images with diagnostic quality, despite the use of an inhomogeneous polarizing magnetic B.sub.0 field. Stringent hardware requirements that have to be observed when designing magnets that can create homogeneous magnetic fields can therefore be relaxed, since this relaxation is compensated in software with the iterative application of steps 106, 108 and 110. The degree of simplicity of the polarizing magnets that can be used in conjunction with the method 100 then becomes a function of the level of the inhomogeneity that the method 100 can support from the iterative process of steps iii) to v). The method 100 thus allows for the simplification of MRI magnets, for instance from large, bulky magnets that are used to create a homogeneous polarizing magnetic field to lightweight, compact magnets that create an inhomogeneous polarizing magnetic field. This can be achieved without any compromise in image quality whatsoever because method 100 can compensate for the effects of the inhomogeneous field that such simplified MRI magnets may produce.
[0034] The method 100 of
[0035] In step 1 of
S(t)=∫∫C.sub.1({right arrow over (r)})O({right arrow over (r)})e.sup.−iγ2πB.sup.
[0036] Here, B.sub.0 is the inhomogeneous polarizing magnetic field, r is the spatial coordinate, TE is the echo time, t is the readout duration, k is the spatial harmonic determined by field gradients, γ is the gyromagnetic ratio, Cl(r) is the coil sensitivity profile of the Ith receiver, O(r) is the slice of interest. While the RF signals emitted from the excited sample undergo intrinsic signal decay due to tissue related T1 and T2 parameters, these effects have been ignored in Equation [1] for simplicity. Equation [1] denotes the data acquired at one echo time TE but data can also be acquired for multiple such echo times for the purposes of reconstruction of a diagnostic image.
[0037] From Equation [1], the following entries of the signal encoding matrix are obtained:
E.sub.(l,k),ρ=e.sup.−iω(r.sup.
[0038] Here, tk is the time-point at which the kth sample in k-space is acquired, r.sub.ρ denotes the voxel spatial coordinate, and ω(r.sub.ρ)=γ2πB0(r.sub.ρ). Therefore, the resultant signal acquisition denoted by Equation [1] is given in Matrix vector formulation by:
Ev=d [3]
[0039] Here, E is the encoding matrix from Equation [2], v is the desired image vector and d is the data acquired at one or more TE echo times. Equation [3] is part of step 4 of
[0040] In step 4, voxels that are located at unique spatial locations in the imaging volume are resolved from an estimate of a spatial map of the B.sub.0 field. Step 4 has several sub-steps: 4a), 4b), 4c), 4d) and 4e). Step 4a) is analogous to step 106 of
[0041] In order to solve Equation [3], an accurate estimate of the B.sub.0 field is required given B.sub.0 field perturbation caused by the sample to be imaged. Since what is available initially is only a B.sub.0 estimate obtained through phantom imaging or via the use of a field camera, Equation [3] can be rewritten as the following:
E.sub.(l,k),ρ=e.sup.−i[{circumflex over (ω)}(r.sup.
[0042] Here, {circumflex over (ω)}(r.sub.ρ) is the initial estimate of the resonant frequency at a particular voxel spatial coordinate. The error in the resonant frequency, caused by B.sub.0 field estimation error, at a particular location is denoted by Δω(r.sub.ρ). The primary source of this error is the perturbation caused by the imaging sample. In order to compensate for this perturbation, the term e.sup.−i[Δω(r.sup.
E.sub.(l,k),ρ=e.sup.−i{circumflex over (ω)}(r.sup.
[0043] Equation [5] is further written in a succinct form as the following:
E.sub.(l,k),ρ=Ê.sub.(l,k),ρ−iΔω(r.sub.ρ)(t.sub.k+TE)Ê.sub.(l,k),ρ [6]
[0044] Here, the entries of Ê.sub.(l,k),ρ are given by e.sup.−i[{circumflex over (ω)}(r.sup.
[0045] Similarly, the desired image vector v is equivalent to {circumflex over (V)}+ΔV where {circumflex over (V)} is the initial estimate of v obtained after solving Equation [3] by using the initial estimate of the field map, i.e. {circumflex over (V)} provides the initial estimate of the diagnostic image of step 106 of
[0046] The error in the estimate is given by ΔV and this value has to be iteratively minimized by successively improving on the field map estimate, as described above with reference to steps 112 of
[0047] Now, consider the following equation:
[0048] Here, d.sub.k denotes one acquired k-space data sample and {circumflex over (d)}.sub.k is an estimate of this acquired sample obtained after using the estimated B.sub.0 map and the computed estimate of the diagnostic image.
[0049] Equations [7] and [8] lead to steps 4b and 4c of
[0050] Using Equation [8] in Equation [7], the following is obtained:
[0051] In matrix vector formulation, Equation [9] can be re-written as:
[0052] Equation [10] can now be solved to obtain the error estimate Δω, which can be used to update the field map. Equation [10] maps to step 4c in
[0053] In step 4c of
[0054] Step 4e) of
[0055] An MRI system in which the method of
[0056] The system includes a workstation 10 having a display 12 and a keyboard 14. The workstation 10 includes a processor 16 that is a commercially available programmable machine running a commercially available operating system. The workstation 10 provides the operator interface that enables scan prescriptions to be entered into the MRI system. The workstation 10 is coupled to four servers including a pulse sequence server 18, a data acquisition server 20, a data processing server 22, and a data store server 23. The workstation 10 and each server 18, 20, 22 and 23 are connected to communicate with each other.
[0057] The pulse sequence server 18 functions in response to instructions downloaded from the workstation 10 to operate a gradient system 24 and an RF system 26. Gradient waveforms necessary to perform the prescribed scan are produced and applied to the gradient system 24 that excites gradient coils in an assembly 28 to produce the magnetic field gradients G.sub.x, G.sub.y and G.sub.z used for position encoding MR signals. The gradient coil assembly 28 forms part of a magnet assembly 30 that includes a polarizing magnet 32 and a whole-body RF coil 34. The polarizing magnet 32 generates the inhomogeneous polarizing magnetic field under which the sample to be imaged is placed. As mentioned in step 102 of
M=√{square root over (I.sup.2+Q.sup.2)}, [11]
[0058] and the phase of the received MR signal may also be determined:
φ=tan.sup.−1Q/I. [12]
[0059] The pulse sequence server 18 also optionally receives patient data from a physiological acquisition controller 36. The controller 36 receives signals from a number of different sensors connected to the patient, such as ECG signals from electrodes or respiratory signals from a bellows. Such signals are typically used by the pulse sequence server 18 to synchronize, or “gate”, the performance of the scan with the subject's respiration or heart beat.
[0060] The pulse sequence server 18 also connects to a scan room interface circuit 38 that receives signals from various sensors associated with the condition of the patient and the magnet system. It is also through the scan room interface circuit 38 that a patient positioning system 40 receives commands to move the patient to desired positions during the scan.
[0061] The digitized MR signal samples produced by the RF system 26 are received by the data acquisition server 20. The data acquisition server 20 operates in response to instructions downloaded from the workstation 10 to receive the real-time MR data and provide buffer storage such that no data is lost by data overrun. In some scans the data acquisition server 20 does little more than pass the acquired MR data to the data processor server 22. However, in scans that require information derived from acquired MR data to control the further performance of the scan, the data acquisition server 20 is programmed to produce such information and convey it to the pulse sequence server 18. For example, during prescans, MR data is acquired and used to calibrate the pulse sequence performed by the pulse sequence server 18. Also, navigator signals may be acquired during a scan and used to adjust RF or gradient system operating parameters or to control the view order in which k-space is sampled. And, the data acquisition server 20 may be employed to process MR signals used to detect the arrival of contrast agent in an MRA scan. In all these examples the data acquisition server 20 acquires MR data and processes it in real-time to produce information that is used to control the scan.
[0062] The data processing server 22 receives MR data from the data acquisition server 20 and processes it in accordance with instructions downloaded from the workstation 10. Such processing may include, for example, Fourier transformation of raw k-space MR data to produce two or three-dimensional images, the application of filters to a reconstructed image, the performance of a backprojection image reconstruction of acquired MR data; the calculation of functional MR images, the calculation of motion or flow images, Parallel Imaging [19] reconstruction of undersampled k-space data and the like.
[0063] The data processing server 22 has at least one processor; and at least one memory including computer program code. The at least one memory and the computer program code are configured to, with the at least one processor, cause the data processing server 22 at least to: i) derive an estimate of the spatial map of the inhomogeneous polarizing magnetic field; ii) process the estimate of the spatial map with the acquired MRI data to obtain an estimate of the diagnostic image; iii) calculate an acquired data error in response to the estimates of the spatial map and the diagnostic image; and iv) update the estimate of the spatial map in response to the calculated error. The MRI data of step ii) may be acquired in k-space and the calculation of the data error in step iv) may be performed in k-space. The data processing server 22 repeats ii) to iv) to improve the estimate of the spatial map of the earlier iteration and the estimate of the diagnostic image. The repetition is stopped when the calculated error of the latest iteration reaches within a tolerance range and wherein the estimate of the diagnostic image from the latest iteration becomes the diagnostic image of the sample. The tolerance range may be defined with regards to the maximum change in the estimate of the B.sub.0 field map. For example, the iterations could be terminated and the final diagnostic image outputted when this change in value is less than 1 Hz.
[0064] Images reconstructed by the data processing server 22 are conveyed back to the workstation 10 where they are stored. Real-time images are stored in a data base memory cache (not shown) from which they may be output to operator display 12 or a display 42 that is located near the magnet assembly 30 for use by attending physicians. Batch mode images or selected real time images are stored in a host database on disc storage 44. When such images have been reconstructed and transferred to storage, the data processing server 22 notifies the data store server 23 on the workstation 10. The workstation 10 may be used by an operator to archive the images, produce films, or send the images via a network to other facilities.
[0065] As shown in
[0066] Referring to
[0067] The magnitude of the RF excitation pulse produced at output 205 is attenuated by an exciter attenuator circuit 206 that receives a digital command from the pulse sequence server 18. The attenuated RF excitation pulses are applied to the power amplifier 151 that drives the RF coil 152A. Referring still to
[0068] It has been found that a MRI system that employs the method of
[0069] The method of
[0070] It will be appreciated by a person skilled in the art that numerous variations and/or modifications may be made to the present invention as shown in the embodiments without departing from a spirit or scope of the invention as broadly described. The embodiments are, therefore, to be considered in all respects to be illustrative and not restrictive.
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