AAV/XBP1S-HA VIRUS, GENE THERAPY METHOD AND USE THEREOF IN THE OPTIMISATION AND IMPROVEMENT OF LEARNING, MEMORY AND COGNITIVE CAPACITIES
20170360961 · 2017-12-21
Assignee
Inventors
Cpc classification
A61K48/0058
HUMAN NECESSITIES
C12N2750/14143
CHEMISTRY; METALLURGY
C12N2830/008
CHEMISTRY; METALLURGY
A61K48/0075
HUMAN NECESSITIES
C12N2750/14151
CHEMISTRY; METALLURGY
A61K48/00
HUMAN NECESSITIES
International classification
A61K48/00
HUMAN NECESSITIES
Abstract
This invention presents a sequence of the virus AAV/XBP1s-HA, method and its use in the improvement of cognitive functions, of memory and of learning, as presented in the in vivo studies in FIG. 12/17 right panel.
Claims
1. An adeno-associated vector (AAV) CHARACTERIZED in that it comprises a recombinant viral genome where that genome comprises an expression cassette that consists of a regulating region of the specific transcription of neuronal tissue joined operatively to a polynucleotide of interest.
2. An adeno-associated vector, according to claim 1, CHARACTERIZED in that the serotype of the AAV is selected from a group that includes AAV6, AAV7, AAV8 and AAV9.
3. An adeno-associated vector, according to claim 2, CHARACTERIZED in that the serotype of the AAV is AAV6.
4. An adeno-associated vector, according to claims 1, 2 and 3, CHARACTERIZED in that the regulating region of the specific transcription of neuronal tissue comprises a promotor region selected from the group that includes Pgk1, Cam 2 and Thy 1, among others.
5. An adeno-associated vector, according to claim 4, CHARACTERIZED in that the promotor region selected from the group is Pgk1.
6. An adeno-associated vector, according to claims 1, 2 and 3, CHARACTERIZED in that it comprises a coding region for an immune response site selected from the group Ha, Flag, Gfp, His and Myc, among others.
7. An adeno-associated vector, according to claim 6, CHARACTERIZED in that it comprises the coding region for an immune response site is Ha.
8. An adeno-associated vector, according to claim 4, CHARACTERIZED in that the regulating region of the specific transcription of neuronal tissue comprises a specific promotor region selected for neurons.
9. An adeno-associated vector, according to claim 8, CHARACTERIZED in that the regulating region of the specific transcription of neuronal tissue comprises a promotor region selected from the group that comprises neuron specific Pgk1, Cam 2 and Thy1, among others.
10. An adeno-associated vector, according to claim 9, CHARACTERIZED in that the regulating region of the specific transcription of neuronal tissue comprises a neuron specific promotor region Pgk1.
11. An adeno-associated vector, according to the previous claims, CHARACTERIZED in that the expression cassette comprises a regulatory post-transcriptional region.
12. An adeno-associated vector, according to claim 11, CHARACTERIZED in that the post-transcriptional regulatory region is the American woodchuck hepatitis virus post-transcriptional regulatory element (WPRE).
13. An adeno-associated vector, according to claims 1 to 12, CHARACTERIZED in that the IRTs of the adeno-associated virus are IRTs derived from AAV6, AAV7, AAV8 and AAV9, preferably AAV6.
14. An adeno-associated vector, according to claims 1 to 13, CHARACTERIZED in that the target sequences to be transcribed comprise a XBP1s and XBP1u.
15. An adeno-associated vector, according to claim 14, CHARACTERIZED in that the target sequence to be transcribed is XBP1s.
16. An adeno-associated vector, according to claim 14, CHARACTERIZED in that the target sequence to be transcribed in XBP1u.
17. An adeno-associated vector, according to claims 1 to 16, CHARACTERIZED in that the polynucleotide of interest codifies proteins within the group that comprises XBP1s and XBP1u, which act systemically close to or with neuronal cells.
18. An adeno-associated vector, according to claim 16, CHARACTERIZED in that the polynucleotide of interest codifies the protein XBP1s.
19. An adeno-associated vector, according to claim 16, CHARACTERIZED in that the polynucleotide of interest codifies the protein XBP1u.
20. An adeno-associated vector, according to claim 17, CHARACTERIZED in that the polynucleotide of interest that acts systemically close to or with neuronal cells, is specific for cells in the hippocampus.
21. An adeno-associated vector, according to claim 20, CHARACTERIZED in that the polynucleotide of interest that acts systemically close to or with neuronal cells is specific for cells in the hippocampus, preferably in the CA3 area.
22. A pharmaceutical composition, CHARACTERIZED in that is comprises an adeno-associated vector described in the previous claims and a pharmaceutically acceptable excipient.
23. A pharmaceutical composition, according to claim 22, CHARACTERIZED in that it comprises a dose of the virus in a range between 10.sup.9 to 10.sup.13 copies of genome (CG) per ml of composition.
24. The use of a pharmaceutical composition, according to claim 22, CHARACTERIZED in that it is useful in the optimization of the memory and cognitive processes.
25. Use of an adeno-associated vector, according to claim 1, CHARACTERIZED in that it is useful in the optimization of the memory and cognitive processes in a mammal.
26. Use of an adeno-associated vector, according to claim 25, CHARACTERIZED in that that mammal is a human.
27. Use of an adeno-associated vector, according to claim 25, CHARACTERIZED in that the adeno-associated vector or the pharmaceutical composition is administrated systemically or locally.
28. Use of an adeno-associated vector, according to claim 25, CHARACTERIZED in that the adeno-associated vector or the pharmaceutical compositions require the expression of the polynucleotide of interest in the neuronal tissue.
29. Method of therapeutic application with an adeno-associated vector, according to claim 1, CHARACTERIZED in that it comprises: a. the contact of the neuronal cells with the adeno-associated virus described in claims 1 to 21; and b. expression of the virus in the neuronal cells.
30. Method of therapeutic application with an adeno-associated vector, according to claim 29, CHARACTERIZED in that the administration routes are subject to the virus passing the haemato-encephalic barrier and comprise the nasal route; by direct intraventricular and/or intrathecal injection, among others.
31. A polynucleotide CHARACTERIZED in that it comprises an expression cassette flanked by the ITRs of an adeno-associated virus, where that expression cassette consists of a promotor, a codifying region for immune response and a polynucleotide of interest.
32. A polynucleotide, according to claim 31, CHARACTERIZED in that the region of the promotor is selected from the group that includes Pgk 1, Cam 2 and Thy 1, among others.
33. A polynucleotide, according to claim 32, CHARACTERIZED in that the promotor region selected from the group is Pgk1.
34. A polynucleotide, according to claim 31, CHARACTERIZED in that it comprises a codifying region for an immune response site selected from the group Ha, Flag, Gfp, His and Myc, among others.
35. A polynucleotide, according to claim 34, CHARACTERIZED in that it comprises the codifying region for an immune response site that is Ha.
36. A polynucleotide, according to claim 31, CHARACTERIZED in that the regulating region of the specific transcription of neuronal tissue comprises a promotor region selected specifically for neurons.
37. A polynucleotide, according to claim 36, CHARACTERIZED in that the regulating region of the specific transcription of neuronal tissue comprises a promotor region selected from the neuron specific group that comprises Pgk 1, Cam 2 and Thy1, among others.
38. A polynucleotide, according to claim 37, CHARACTERIZED in that the regulating region of the specific transcription of neuronal tissue comprises a neuron specific promotor region Pgk1.
39. A polynucleotide, according to claims 31 to 38, CHARACTERIZED in that the expression cassette also comprises a post-transcriptional regulatory region.
40. A polynucleotide, according to claim 39, CHARACTERIZED in that the post-transcriptional regulatory region is the woodchuck hepatitis virus post-transcriptional regulatory element (WPRE).
41. A polynucleotide, according to claim 31, CHARACTERIZED in that the target sequences to be transcribed comprise the sequences XBP1s and XBP1u.
42. A polynucleotide, according to claim 41, CHARACTERIZED in that the target sequence to be transcribed is XBP1s.
43. A polynucleotide, according to claim 41, CHARACTERIZED in that the target sequence to be transcribed in XBP1u.
44. A polynucleotide, according to claims 31 to 43, CHARACTERIZED in that the polynucleotide of interest codifies proteins within the group that includes XBP1s and XBP1u, which act systemically close to or with neuronal cells.
45. A polynucleotide, according to claim 44, CHARACTERIZED in that the polynucleotide of interest codifies the protein XBP1s.
46. A polynucleotide, according to claim 44, CHARACTERIZED in that the polynucleotide of interest codifies the protein XBP1u.
47. A polynucleotide, according to claim 31, CHARACTERIZED in that the polynucleotide of interest that acts systemically close to or with neuronal cells, is specific for cells in the hippocampus.
48. A polynucleotide, according to claim 47, CHARACTERIZED in that the polynucleotide of interest that acts systemically close to or with neuronal cells, is specific for cells in the hippocampus, preferably in area CA3.
49. A plasmid, CHARACTERIZED in that it comprises the sequences of an adeno-associate, an expression cassette flanked by the ITRs of the adeno-associated virus, where the expression cassette comprises a promotor, a codifying region for immune response and a polynucleotide of interest, like the one deposited in the international agency of biological deposit, American Type Culture Collection (ATCC) with deposit number PTA-121708.
50. An adeno-associated virus, CHARACTERIZED in that is comprises the viral genome described in claims 31 to 48.
51. A method to obtain an adeno-associated viral vector CHARACTERIZED in that it comprises the steps of: a. provide a cell that comprises a polynucleotide according to any of the claims 31 to 48, with the proteins AAV Cap, with the proteins AAV Rep and the viral proteins on which AAV depends for its replication: b. maintain the cells under adequate conditions for the assembly of the AAV; and c. purify the adeno-associated viral vector produced by the cell.
52. A method, according to claim 51, CHARACTERIZED in that the AAV is dependent on the replication derived from the adenovirus.
53. A method, according to claims 49 and 51, CHARACTERIZED because the proteins Cap and Rep of the adeno-associated virus are derived from an AAV selected from the serotypes AAV6, AAV7, AAV8 and AAV9.
54. A method according to claim 53, CHARACTERIZED in that the proteins Cap and Rep of the adeno-associated virus are derived from the serotype AAV6.
Description
DESCRIPTION OF THE FIGURES
[0139]
[0140] In this figure, an evaluation is made of the levels of expression of several genes related with the memory measured in the hippocampus, such as XBP1.sup.f/f (n=4 mice) and XBP1.sup.Nes−/− (n=5 to 6 mice) using PCR in real time.
[0141]
[0142] This figure presents the levels of mRNA of the genes related with the memory, indicated in
[0143]
[0144] This figure presents the levels of BDNF and KIF17 protein that were analyzed by Western blot using extracts of hippocampus obtained from 6-month old animals for XBP1.sup.f/f and XBP1.sup.Nes−/−. The levels of β-actin or Hsp90 were used as load control. The average and the standard error are shown as the times of change in comparison with control animals (n=3). The bands were spliced from the same gel and their exposure to the film.
[0145]
[0146] This figure shows the levels of mRNA of the genes of the UPR indicated. These genes were measured in the dissected hippocampus of mice XBP1.sup.Nes−/− or of animals XBP1.sup.f/f using PCR in real time. The analysis was executed at 6 months of age (n=3 per group for Xbp1Δ and n=5 per group for Wfs1, Edem and Bip).
[0147]
[0148] This figure shows the alterations in the long-term memory and the long-term potentiation of XBP1 conditioned in knock-out mice. Here we see a bar graph where the XBP1.sup.Nes−/− mice are presented and the control of the same litter (XBP1.sup.f/f) of male mice where conditioning to contextual fear was tested in the test. The percentage of events of immobility during the test was calculated (XBP1.sup.f/f: n=4 and XBP1.sup.Nes−/−: n=6 per group). A statistical analysis was made using the Student's t-test (*: p<0.05).
[0149]
[0150] Presented here in parallel, in another bar graph, is the result obtained when the animals were trained and evaluated using the paradigm of memory flexibility. The analysis shows the average number of tests to find the criteria of four consecutive days (n=4 per group). A statistical analysis was carried out using the Student's t-test (***: P<0.001).
[0151]
[0152] This figure presents the electrophysiological records of the LTP carried out on hippocampal slices derived from XBP1.sup.Nes−/− or XBP1.sup.f/f of the same litter of control mice (n=7 per group). Representative records of the fEPSP are shown after three stimulation trains with 100 Hz in the collateral circuit of Schaffer-CA1. The statistical analysis was carried out using two-way ANOVA (***: p<0.001).
[0153]
[0154] This figure shows that the overexpression of XBP1s in the neurons improves the long-term memory. In this figure, a specific neuronal transgenic strain of XBP1s is presented, created using the promotor of the prion to induce the expression in the CNS (Tg.sup.XBP1s). In the left panel, we observe the levels of XBP1s in hippocampus analyzed by Western blot with the levels of β-actin as load monitor. In the right panel, the level of learning was evaluated comparing animals Tg.sup.XBP1s and the control litter, using the memory flexibility test. The number of tests to reach this criterion is presented (n=5 per group). The statistical analysis was carried out using a two-way ANOVA, followed by a Bonferroni post-test (*: p<0.05, ** p<0.01, *** p<0.001).
[0155]
[0156] The LTP was measured in hippocampus slices Tg.sup.XBP1s and in control animals by theta burst stimulation (n=7 per group). The records of the fEPSP are shown. A statistical analysis was made using a two-way ANOVA (***: p<0.001).
[0157]
[0158] This figure shows that the local expression of XBP1s in the hippocampus improves the long-term memory tests in three-month old mice that were injected with an adeno-associated virus (AAV) serotype 6 to deliver XBP1s-HA (AAV/XBP1s-HA) or the empty vector (AAV/MOCK) in the hippocampus using bilateral stereotaxis. Fourteen days after the injection, the animals were trained and evaluated in the memory flexibility test (n=6 per group). The statistical analysis was carried out via a two-way ANOVA followed by a Bonferroni post-test (*: p<0.05, **: p<0.01, ***: p<0.001).
[0159]
[0160] In this diagram, Xbp1s is presented in the left panel and Bdnf in the right panel. The mARN levels were measured by PCR in real time in the total of cADN obtained as of the hippocampus of wild-type mice injected with AAV/XBP1s or AAV/MOCK particles. The expression values were standardized with the levels of β-actin (n=6 per group). A statistical analysis was made using the Student's t-test (*: p<0.05).
[0161]
[0162] In these graphs, mice were evaluated that had been injected with particles of AAV, described in
[0163] In the right-hand panel, the mice were trained for the oasis labyrinth test and the percentage of success in the task was measured over time (1× title: AAV/MOCK n=9; AAV/XBP1s-HA: n=10; 10× title: AAV/MOCK n=5; AAV/XBP1s-HA: n=5). A statistical analysis was carried out by means of a two-way ANOVA followed by a Bonferroni post-test (*: p<0.05, ***: p<0.001). The average and the standard error are presented in all the figures.
[0164]
[0165] This figure presents that the overexpression of XBP1s in the hippocampus of mice improves the performance in the Oasis test. The mice were injected by bilateral stereotaxis with the serotype 6 of the adeno-associated virus (AAV) to deliver XBP1s-HA (AAV/XBP1s-HA) or particles of an empty vector (AAV/MOCK) in the hippocampus of wild-type mice using the different titres of virus (1×: 1×10.sup.6 TUs, 10×: 1×10.sup.7 TUs). The mice were trained in the oasis labyrinth (
[0166]
[0167] This figure presents a work model where one sees an interaction between the virus AAV/XBP1s-HA and/or the AAV/XBP1u-HA virus and a cell from the hippocampus and how the mARN of Xbp1s and Xbp1u act on the group of genes (Ryr2, Ampa 3, Bdnf and Kif17) in the regulating of learning and the memory. Where the expression of XBP1 in the neurons of the hippocampus directly or indirectly (dotted lines) controls the expression of different genes implied in the establishment of the memory and other cognitive processes. The direct regulation of the genes of the cluster and the expression that is produced through the bonding of XBP1 to a bonding site UPRE B located in the proximal promoter region of Bdnf.
[0168]
[0169] This figure shows an outline of the AAV genome.
[0170] REP: Genes involved in the AAV replication mechanism.
[0171] VP: Genes involved in the formation and assembly of the capsid.
[0172] ITR: It is the equivalent of LTR, repeated terminal inverted sequence.
[0173]
[0174] This figure presents the vector of the AAV virus with the insert Xbp1s with the following specific description according to table VI.
TABLE-US-00003 TABLE VI Type Start Stop C Description LTR 1 141 /note = L-ITR promoter 150 >706 /note = PGK1 promoter frag 151 708 /note = 151 to 708 of #18 AAV-PGK1-MCS intron 721 1203 /note = beta-globin intron CDS 1219 1248 /note = /HA tag= CDS 1249 2364 /note = /xbp-1= frag <2368 2970 /note = 1 to 605 of WPRE frag <2378 >2967 /note = WPRE frag 2380 >2967 /note = 1094 to 1682 of WHV frag 2380 >2967 /note = 1 to 589 of WHV lentivirus CDS 2789 >2967 /codon_start = 1 /db_xref = PID: g336148 /note = X protein /translation = MAARLCCHLDSARDVLLLRPFGPQSSGPSFPRPAAGSAASSASSPSPSDESDLPLGR LPACFASASGPCCLVFTCADLRTMDSTVNFVSWHANRQLGMPSKDLWTPYIKDQLLTKWEEGSID PRLSIFVLGGCRHKCMRLL[Split] polyA_site 2976 3454 /note = hGH polyA LTR 3494 3634 /note = R-ITR insertion_seq 3726 4032 /note = f1 origin CDS 4551 5408 /note = Ampicillin resistance ORF insertion_seq 5559 6226 /note = pUC origin
[0175]
[0176] This figure presents the generation of the adenoviral plasmid (pAAV) for XBP1s.
[0177] (A) Description of the splitters used in the cloning of XBP1s with HA tag in the expression vector pAAV-PGK1-MCS. Splitters were designed that delimit the murine XBP1s sequence: the sense strand includes the sequence of the HA tag for the 5′ end (left panel) and the antisense strand includes the sequence of the HA tag for the 3′ end (right panel) indicated by the gray-colored box.
[0178] a) HA—sense strand
[0179] b) antisense strand
[0180] c) sense strand
[0181] d) HA—antisense strand
[0182] B) In the lower figure, the expression levels of HA were evaluated based on total extracts of proteins from HEK cells after 48 hours of transfection with the different constructs. The extracts of proteins were made in RIPA solution and 35 mg of proteins were analyzed using Western Blot in gels of acrylamide at 8%. The expression of HA was determined using a monoclonal primary antibody destined against HA (Dilution 1:1000, Covance, catalogue number MMS-101R) and the secondary antibody anti IgG of mice conjugated to peroxidase (dilution 1:3000). As load control, the expression of β-Actin was determined using a primary polyclonal antibody (dilution 1:1000, Santa Cruz, catalogue number sc-1616) and the secondary antibody anti-IgG of goat conjugated to peroxidase (dilution 1:3000).
EXAMPLE OF APPLICATION
[0183] Experimental Test 1
[0184] The transformed virus AAV/XBP1s-HA was applied locally in brains of wild mice to increase the expression of XBP1s and its activity. The selective expression in the hippocampus of adult mice was induced by bilateral stereotaxic injections of the AAV virus serotype 6 in order to free XBP1s and, on the other hand, a control vector AVV/MOCK, in the area of the hippocampal region CA1.
[0185] Two weeks after the injection, the rats were tested in memory flexibility tests. Results were observed similar to those observed in the Tg.sup.XBP1s animals, with the local expression of XBP1s in the hippocampus, resulting with an improved performance in the cognitive tasks (
[0186] To see if the cognitive response is correlated with overexpression of any of the genes of the cluster (KIF 17, AMPA 3, BDNF, RYR3) related with the memory, the overexpression of the mARN of one of these genes in the hippocampus was evaluated. It was observed that a correlation exists between the increase of the mARN of the group of genes mentioned previously and the cognitive response (
[0187] Experimental Test 2
[0188] To validate the results delivered in the experimental test 1, the virus was tested in another model of rodent using a cognitive test that evaluates the memory dependent on the hippocampus. Two different doses of AAV/XBP1s-HA (
[0189] The mice that express XBP1s-HA in the hippocampus (
[0190] Material and Methods
[0191] Animals and Surgical Procedures:
[0192] For all the experiments, male mice, 3-6 months old, were used for XBP1.sup.Nes−/−, Tg.sup.XBP1s and mice of the wild type C57BL/6. The mice were maintained in a light-darkness cycle of 12:12 hours and they had free access to food and water, unless the experiment required it.
[0193] The guidelines established by the committee for the care and use of animals in the University of Chile, Chile were used for all the experiments in animals presented in this development.
[0194] Generation of Transgenic Mice XBP1s.
[0195] The cADN Xbp1s of mice was sub cloned in the Xho1 site of the vector.sup.2 MoPrP.Xho to control the expression under the promotor PrP and the microinjection of cells CBA-C57BL/6 derived from pronuclei of mice of fertilized oocytes. The genetic state of the mice was confirmed by PCR of genomic DNA from tails of mice (3 weeks) using the splitters for XBP1s:
TABLE-US-00004 Sense strand: 5′-ACACGCTTGGGAATGGACAC-3′ Antisense strand: 5′-CCATGGGAAGATGTTCTGGG-3′
[0196] Behavioral Tests
[0197] All the experiments were performed blindly, and different cohorts of animals were used for each behavioral test.
[0198] Conditioning of contextual fear: In the first days, the animals were allowed to become accustomed in the chamber (Med Associates, Burlington, Vt.) for 2 minutes and then they were presented with a base noise (80 dB) for 30 seconds. After an interval of 2 seconds, the animals were exposed to an electric shock of 0.5 mA, which is known as an unconditioned stimulus (US). This procedure was repeated five times. Twenty-four hours after the training, the animals are placed in the original chamber once again and the immobility events are evaluated for 5 minutes to determine the associations of the US with the context. The immobility events are automated with the Med Associates software (Burlington, Vt.) designed to determine 30 observations in five minutes. This experiment was carried out at Case Western Reserve University (CWUR) Rodent Behavior Core and was then repeated at the Harvard Neuro-discovery Center.
[0199] The flexibility of the Memory
[0200] The memory flexibility test was carried out according to the description of Chen et al (2000). The training is carried out up to ten tests per day, until the location of the platform is learned. Through a criterion a priori of three latent escapes of less than 20 seconds. After the finalization of the tests, the mouse was removed from the labyrinth, was dried and returned to his cubicle. The data related to the time spent in each quadrant of the pool was linked to a video tracking system of the water labyrinth (HVS Image, Hampton, United Kingdom).
[0201] Oasis Maze
[0202] A modified protocol of the Oasis Maze was used, that is a dry version equivalent to the water labyrinth in the requirement of hippocampal spatial navigation. The apparatus consisted of sand in an open field of 1.4 m in diameter, that is 50-cm above the floor with a 20-cm high wall, that is in an isolated room with constant distal visual signals. Twenty-one evenly spaced wells (4.5 cm in diameter, 2 cm high) were placed on the table and one of the wells is baited with 50 mg of food. Fourteen days after recovering from surgery, the task consisted in 15 tests of one minute each per session, one session per day, during four consecutive days. All the behavior of the animals was recorded on video, with the help of a video camera in zenithal position.
[0203] Startle Response
[0204] The mice were placed in a Plexiglas cylinder and were left at rest for five minutes. After the acclimatization, each subject was presented to 36 tests in one 9-minute test session. They are exposed to nine different levels of sound: 70, 74, 78, 82, 86, 90, 100, 110 and 120 (dB). Each stimulus was of 40 ms and was presented on four occasions with a pseudorandom purpose. The average interval between tests was of 15 s (it oscillated from 10 to 20 s). The startle response was registered during 65 ms (each measurement of the response of 1 ms) based on the appearance of the startle response. The maximum amplitude of the shock was registered during the 65 ms sampling window that was used as a dependent measure.
[0205] Rotarod
[0206] The mice were placed on a bar that rotates at 4 rpm during a minute of acclimation. The rod was accelerated at 0.1 rpm/s to 40.0 rpm. The test continued until all the mice fell off the rod. The latency in fallings and the rpm at the moment of the fall were registered for each mouse. Three tests were executed per mouse and an average calculated.
[0207] Hot Plate
[0208] The animal was placed on the plate at 55° C. The animal was observed until it showed a nociceptive response (for example, licking its rear legs, jumps or squeaks) or until the cut-off time is reached (30 seconds). The animal was removed and the latency of response was recorded. For the animals that do not respond before the cut-off time, the cut-off time was recorded.
[0209] Recognition of New Objects
[0210] The object recognition tests were carried out in the following manner. Twenty-four hours before the test the animals became accustomed to an open field for 15 minutes. The test wraps the presentation of two identical objects in an open field of 45×45 cm for ten minutes. The animals were allowed to explore freely and the frequency and duration of the explorations were quantified. One exploration was defined by direct visual contact at a distance of 1 cm or less, or a direct interaction with the object. After the training was concluded, the animals were placed again in their house-cage for one hour. The level of the object recognition memory was measured by switching one of the objects in the open field and allowing the animal out to explore the two objects for five minutes. The novel object was different but its exploratory index was similar. The relationship of the total novelty to the exploration of the object was used to determine the exploratory discrimination relationship. The locomotor activity was measured and the exploration of both objects during the training and test sessions to identify any object side/preference or general differences in the locomotor/exploratory activity.
[0211] Open Field
[0212] The locomotor activity and the observations of behavior related to anxiety were made while the mouse was in an “open field”. The open field consists of a 40-cm×40-cm box situated in a dimly lit room. The animals are placed in the open field and they are allowed to explore the enclosure freely for 15 minutes. During this period, the locomotor parameters such as the total distance of movement, speed, angular speed and the direction are measured to determine the basic locomotive activity and the presence of stereotypes.
[0213] Production of Adeno-Associated Vectors
[0214] The particles of the AAV serotype 6 (AAV2/6) virus were produced by the transfection of cells 293-AAV (Agilent Technologies, Santa Clara, Calif.) and they were purified in a gradient of iodixanol followed by affinity column chromatography. The number of particles of AAV that the genome contains in the suspension, as well as the infectivity of the vector's suspension in cells HEK293T were determined by means of TaqMan qPCR tests.
[0215] Preparation of the Adenoviral Plasmid (pAAV) for XBP1s.
[0216] For the development of this objective, the sequence of XBP1s murine was cloned in the adenoviral plasmid pAAV-PGK1-MCS, that expresses the transgene under the promotor PGK1. Due to the absence of antibodies that permit recognition of XBP1s in murine tissue, the sequence of the HA tag was included in the cloning strategy (
[0217] Therefore, we generate the amplification of XBP1s with the sequence of the HA tag at the terminus 5′ (left panel) and with the HA sequence in the terminus 3′ (right panel). The clones obtained were confirmed by means of DNA sequencing. In this way, we generated the constructs pAAV PGK HA-XBP1s that codify for the fusion protein XBP1s with the HA tag at the end of the amino terminal and pAAV PGK XBP1s-HA with the HA tag at the end of the carboxyl terminal. The empty adenoviral plasmid pAAV PGK was utilized as a control.
[0218] To confirm the expression of the constructs generated we transfected HEK cells with the different constructs, after 48 hours of transfection we executed the extraction of proteins that were evaluated by means of WB using an anti-HA antibody.
[0219] As can be seen in
[0220] The cDNA XBP1s-HA that codifies C-terminal HA-labeled, the active form of XBP1 mice, was generated by amplifying by PCR of pCMVsport6-mXBP1s.
TABLE-US-00005 Sense strand 5′AGCTATCGATGAGATGATGGTGGTGGTGGCAGCGGCG3′; Anti-sense strand 5′ACGTAGATCTTTAGACGTAATCTGGAACATCGTATGGGTAGACACTAA TCAGCTGGGGGAAAA 3′
[0221] And they were sub cloned in the expression vector pAAV-pgk1-MCS that is derived from the plasmid pAAV-CMV-MCS (Clontech).
[0222] Stereotaxic Injections
[0223] The mice were anesthetized using ketamine/xylazine anesthesia (Ketamine: 100 mg/kg, xylazine: 10 mg/kg, Vetcom, Chile) and were placed in a stereotaxic with bars in the nose and ear for the mice (David Kopf Instruments, U.S.A.). Bilateral injections of AAV/XBP1s-HA, AAV/MOCK, AAV/BDNF-GFP or AAV/GFP were executed with the following concentrations: 1×10.sup.6 units of transduction/μl (TU) of AAV/XBP1s-HA and AAV/MOCK; 1×10.sup.9 viral genomes/μl (VG) were injected for AAV/BDNF-GFP and AAV/GFP. The expression of EGFP was controlled by PCR in real time after the injection of the AAV to corroborate that the efficiency of the transduction was the same as that obtained in these experiments for both constructions (data not shown). The injection of AAV was executed in a single point, the injection of 2 or 3 μl in the CA1 region of the hippocampus using a 5 μl Hamilton syringe (Hamilton, U.S.A.) in the following coordinates: AP: −0.194 cm μl/min and the needle is left in its place for 5 minutes before the retraction of the needle.
[0224] For the stereotaxic injections in the mice, the animals were anesthetized using the isoflurane inhalation anesthetic (halogenated ether 2-chlorine-2-difluoromethoxy-1,1,1-trifluor-ethane) and they were maintained at 1.0-2.0% of isoflurane in oxygen at 100% and they are placed in a stereotaxic frame with the nose and ear with bars for mice. Bilateral injections of AAV/XBP1s-HA or AAV/MOCK were executed with the following concentrations: 1×10.sup.6 TU (1×) or 1×10.sup.7 TU (10×). The AAVs injection was placed at a single point, the injection of 2 μl in the CA3 region of the hippocampus using a 5 μl Hamilton syringe (Hamilton, U.S.A.) in the following coordinates: AP: −0.33 cm, ML: 0.36 cm, DV: −0.33 cm (according to the Paxinos and Watson atlas, 1998). The injection was carried out at a speed of 05 μl/min and the needle was left in place for 5 minutes before it was retracted.
[0225] Preparation of Tissues for the Biochemical Analysis.
[0226] The mice were sacrificed by narcosis of CO.sub.2, the brains were removed, and the cortex, hippocampus, cerebellum and amygdala of both hemispheres were dissected rapidly in a plastic plate cooled with ice. The tissue was homogenized in 100 μl of phosphate buffered saline (PBS) (pH 7.4) supplemented with a mixture of protease inhibitors (Roche Applied Science, U.S.A.). The homogenized was divided to obtain mARN and the extraction of proteins was followed by standard purification and quantification protocols.
[0227] Extraction of ARN and PCR in Real Time.
[0228] The total ARN was isolated from the hippocampus, the amygdala, the cerebellum and the total brain. After the homogenization in PBS we have continued the ARN Trizol extraction protocol recommended by the manufacturer. The cDNA was synthesized with a kit of cDNA high capacity reverse transcription (Applied Biosystems). SYBR green and a System (Stratagene) Mx3005P QPCR were utilized for the quantitative RT-PCR. The relative amount of mARN was calculated by the comparative threshold cycle method with β-actin as control. The Primers of the sequences were obtained based on the PrimerBank (Table VII).
TABLE-US-00006 TABLE VII Sequence Target Forward Reverse Ttr 5′-TTGCCTCGCTGGACTGGTA-3′ 5′-TTACAGCCACGTCTACAGCAG-3′ Retn 5′-CTGTGTCATACGCCAAGAACA-3′ 5′-GGGGAGGTACAGGATGTGGAT-3′ GRia1 5′-GTCCGCCCTGAGAAATCCAG-3′ 5′-CTCGCCCTTGTCGTACCAC-3′ Gria2 5′-GCCGAGGCGAAACGAATGA-3′ 5′-CACTCTCGATGCCATATCGTTG-3′ Gria3 5′-ACCATCAGCATAGGTGGACTT-3′ 5′-ACGTGGTAGTTCAAATGGAAGG-3′ Gria4 5′-GGGAGGTGACTCCAAGGACA-3′ 5′-CCAGTCATGGATAACCTGGCT-3′ Myo5b 5′-CAGCAAGTGGTCAATGCACG-3′ 5′-TGGCGTAGTTGATACAAAACTGT-3′ Creb 5′-AGCCGGGTACTACCATTCTAC-3′ 5′-GCAGCTTGAACAACAACTTGG-3′ Bdnf 5′-CAGGTTCGAGAGGTCTGACGA-3′ 5′-CGCGTCCTTATGGTTTTCTTCG-3′ Camk11 5′-TGCCTGGTGTTGCTAACCC-3′ 5′-CCATTAACTGAACGCTGGAACT-3′ Ryr1 5′-CAGTTTTTGCGGACGGATGAT-3′ 5′-CACCGGCCTCCACAGTATTG-3′ Ryr2 5′-ATGCTTTAAGGCACAGCG-3′ 5′-CAGAGCCCGAATCATCCAGC-3′ Ryr3 5′-ACCAGCAGGAGCAAGTACG-3′ 5′-GGGGTCGTGTCAAAGTAGTCA-3′ Nr2a 5′-ACGTGACAGAACGCGAACTT-3′ 5′-TCAGTGCGGTTCATCAATAACG-3′ Nr2b 5′-GCCATGAACGAGACTGACCC-3′ 5′-GCTTCCTGGTCCGTGTCATC-3′ Pp2b/Caln 5′-AAATGAGGCCAGCTACCAAAC-3′ 5′-CCCGATTTGTCCAAGTCCAG-3′ Kif17 5′-GGGGCATCATTCCCAGAGC-3′ 5′-TTGTGTACCGTGTGCATGGAC-3′ Stx17 5′-TCAAAGTGGCAGGAATTGCAG-3′ 5′-AATTTTCCACCTGTGAAGCCTAA-3′ Kcnk1 5′-GAGGAGCTGCCTTATGAGGAC-3′ 5′-TCCCAATTCCAATTTCCCGAG-3′ Xpo4 5′-CCCCCAGAAGTGATCGCTC-3′ 5′-TGGTTTCCAAAATATGCCTGCAA-3′ Csnk2a 5′-AGGATAGCCAAGGTTCTGGGA-3′ 5′-CCATCGCTTACGGGAGTGTC-3′ Adb1 5′-GAACCCTGCAACTGTCGTC-3′ 5′-CCACGAGTAGGCCCATACC-3′ Pten 5′-TGGATTCGACTTAGACTTGACCT-3′ 5′-GCGGTGTCATAATGTCTCTCAG-3′ Map2k3 5′-GCCTCAGACCAAAGGAAAATCC-3′ 5′-GGTGTGGGGTTGGACACAG-3′ Ucqr10 5′-ATCCCTTCGCGCCTGTACT-3′ 5′-GTGCTCGTAGATCGCGTCT-3′ Nipsnap1 5′-CACGGCGGCTATTCACGAA-3′ 5′-GAACGGAACCAGCTTCCTTCA-3′ Xbp1Δ 5′-CCTGAGCCCCGGAGGAGAA-3′ 5′-CTCGAGCAGTCTGCGCTG-3′ Wfs1 5′-CCATCAACATGCTCCCGTTC-3′ 5′-GGGTAGGCCTCGCCAT-3′ Edem 5′-AACCCAATGGCCTGTCTGG-3′ 5′-AAGCCCTCTGGAACTTGCG-3′ Bip 5′-TCATCGGACGCACTTGGAA-3′ 5′-CAACCACCTTGAATGGCAAGA-3′ Actin 5′-CTCAGGAGGAGCAATGATCTTGAT-3′ 5′-TACCACCATGTACCCAGGCA-3′
[0229] Western Blot of Tissue.
[0230] The extraction of proteins based on the tissue of mice was carried out in RIPA Buffer (20 mM Tris pH 8.0, NaCl 150 mM, 0.1% of SDS, 0.5% deoxycholate, 0.5% of Triton X-100) that contains a mixture of inhibitors of the protease and a mixture of inhibitors of the phosphatase (Sigma, U.S.A.). An example of this quantification was executed with the BCA test kit (Pierce, U.S.A.). Total cellular extracts were separated by SDS-PAGE and were transferred to membranes of polyvinylidene difluoride. The following antibodies were used for the analysis of immunoblot: Hsp90 (1:3000 Santa Cruz), anti e1F2α phosphorylated, the total e1F2α and Hsp90 (1:1000, Cell Signaling), BDNF (1:1000, Alomone Labs), KIF17 (1:1000, Sigma), XBP1 (1:1000, Poly6195-BioLegend), β-actin and ATF4 (1:1000, Santa Cruz).
[0231] Preparation of the Tissue and the Histologic Analysis
[0232] The mice were anesthetized with the ketamine/xylazine mixture of anesthesia and they were fixed with paraformaldehyde at 4%. The mice were deeply anesthetized with 7% of chloral hydrate (350 mg/kg, ip) and they were fixed with paraformaldehyde at 4%. The brains were extracted, then fixed during the night at 4° C. in the same solution and subsequently placed at 30% of sucrose (Merck, U.S.A.) at 4° C. for 48 hours. The brains were frozen in an optimum compound for cutting coronal sections at an adequate temperature (Tissue Tek, U.S.A.): 25 μm for male mice and 50 μm for female mice that containing the hippocampus were cut in a cryostat (Leica, Germany) and then staining was executed in free-floating sections.
[0233] The immunostaining was executed via the universal kit plus ICQ LSAB (ABC Elite Kit, Vector Laboratories, U.S.A.). The sections were incubated with H.sub.2O.sub.2 at 3% in PBS for 30 minutes and were blocked for 2 hours with 0.5% of bovine serum albumin and 0.1% of Triton X-100. The sections were incubated during the night at 4° C. in a blocking solution with HA (1:800, Covance) as a primary antibody and they were washed three times with PBS and were incubated for one hour at room temperature with the biotinylated anti-mouse secondary antibody (1:1000). After rinsing three times, the sections were treated with avidin-biotin-peroxidase complex. The sections were developed using 3,3-diaminobenzidine for 5 minutes and they were visualized in an Olympus IX71 inverted microscope or in a DM5500 Leica for the digitalization of the complete sections.
[0234] Preparation and the Electrophysiology of the Slice of Hippocampus.
[0235] The slices of hippocampus were prepared according to standard procedures for mice aged 4-6 months. Transversal slices of 350 μm of the dorsal hippocampus were cut in artificial cold cephalorhachidian liquid (ACSF, in mM: 124 NaCl, 2,6 NaHCO3, 10 D-glucose, 2.69 KCl, 1.25 KH.sub.2PO.sub.4, CaCl.sub.2 2,5, 1.3 MgSO.sub.4, and 2,60 NaHPO.sub.4) using a vibratome (Leica VT 1000 s, Germany) and they were incubated in ACSF for more than one hour at room temperature. In all the experiments, picrotoxin was added (10 μM) to the ACSF perfusion means in order to suppress the inhibiting transmission GABAA. To evoke field excitatory postsynaptic potential (fEPSPs), Schaffer collateral fibers were activated for the bipolar cathodic stimulation, generated by a stimulator (Axon 700b, Molecular Devices, Sunnyvale, Calif.) connected to an isolation unit (Isoflex, AMPI, Jerusalem, Israel). To generate LTP, in mice XBP1.sup.Nes−/− that uses high frequency stimulation (HFS) that consists of three stimulus trains with an interval between trains of 20 s. Each train consisted of 100 Hz for 500 ms. In the Tg.sup.XBP1s mice we used the theta burst stimulation that consists of 5 stimulus trains with an interval between trains of 20 s. Each train consisted of 8 bursts at 5 Hz, each burst has 4 pulses at 100 Hz. The recordings were filtered at 2.0-3.0 kHz, sampling at 4.0 kHz using an A/D converter, and they are stored with a pClamp 10 computer (Molecular Devices).
[0236] Cultures and Neuronal Transfections.
[0237] The neuro2A cells and the HEK293T cells were obtained from the ATCC and were cultivated in a DMEM medium supplemented with 10% of bovine serum or 5%, respectively, and antibiotics (10000 U/ml of penicillin, 10 mg/ml of streptomycin) at 37° C. and 5% of CO.sub.2. The cortical neurons and those of the hippocampus were obtained on the 18.sup.th embryonic day described by Goslin and Banker (1991).
[0238] Statistics
[0239] The data is expressed as average and SEM. Depending on the experiments, the results were compared statistically using the Student's T test or the Mann-Whitney test, the two-way ANOVA followed by Holm-Sidack or Bonferroni as a post-hoc test or one-way Kruskal-Wallis ANOVA in ranges followed by the Dunn or Bonferroni Method as a post-hoc test.
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TABLE-US-00007 TABLE II Characteristics and sequence of the plasmid pAAV-MCS alone. 1-130: left ITR 139-801: CMV Promotor 809-1301: Intron of human β-globin 1308-1383: MCS 1384-1862: PolyA 1902-2042: right ITR 2959-3819: Ampicillin resistance 5′ cctgcaggcagctgcgcgctcgctcgctcactgaggccgcccgggcg tcgggcgacctttggtcgcccggcctcagtgagcgagcgagcgcgcagag agggagtggccaactccatcactaggggttcctgcggccgcacgcgtgga gctagttattaatagtaatcaattacggggtcattagttcatagcccata tatggagttccgcgttacataacttacggtaaatggcccgcctggctgac cgcccaacgacccccgcccattgacgtcaataatgacgtatgttcccata gtaacgtcaatagggactttccattgacgtcaatgggtggagtatttacg gtaaactgcccacttggcagtacatcaagtgtatcatatgccaagtacgc cccctattgacgtcaatgacggtaaatggcccgcctggcattatgcccag tacatgaccttatgggactttcctacttggcagtacatctacgtattagt catcgctattaccatggtgatgcggttttggcagtacatcaatgggcgtg gatagcggtttgactcacggggatttccaagtctccaccccattgacgtc aatgggagtttgttttgcaccaaaatcaacgggactttccaaaatgtcgt aacaactccgccccattgacgcaaatgggcggtaggcgtgtacggtggga ggtctatataagcagagctcgatagtgaaccgtcagatcgcctggagacg ccatccacgctgattgacctccatagaagacaccgggaccgatccagcct ccgcggattcgaatcccggccgggaacggtgcattggaacgcggattccc cgtgccaagagtgacgtaagtaccgcctatagagtctataggcccacaaa aaatgctttcttcttttaatatacttttttgtttatcttatttctaatac tttccctaatctctttcatcagggcaataatgatacaatgtatcatgcct attgcaccattctaaagaataacagtgataatactgggttaaggcaatag caatatactgcatataaatatactgcatataaattgtaactgatgtaaga ggatcatattgctaatagcagctacaatccagctaccattctgcttttat tttatggttgggataaggctggattattctgagtccaagctaggcccttt tgctaatcatgttcatacctcttatcttcctcccacagctcctgggcaac gtgctggtctgtgtgctggcccatcactttggcaaagaattgggattcga acatcgattgaattccccggggatcctctagagtcgacctgcagaagctt gcctcgagcagcgctgctcgagagatctacgggtggcatccctgtgaccc ctccccagtgcctctcctggccctggaagttgccactccagtgcccacca gccttgtcctaataaaattaagttgcatcattttgtctgactaggtgtcc ttctataatattatggggtggaggggggtggtatggagcaaggggcaagt tgggaagacaacctgtagggcctgcggggtctattgggaaccaagctgga gtgcagtggcacaatcttggctcactgcaatctccgcctcctgggttcaa gcgattctcctgcctcagcctcccgagttgttgggattccaggcatgcat gaccaggctcagctaatttttgtttttttggtagagacggggtttcacca tattggccaggctggtctccaactcctaatctcaggtgatctacccacct tggcctcccaaattgctgggattacaggcgtgaaccactgctcccttccc tgtccttctgattttgtaggtaaccacgtgcggaccgagcggccgcagga acccctagtgatggagttggccactccctctctgcgcgctcgctcgctca ctgaggccgggcgaccaaaggtcgcccgacgcccgggctttgcccgggcg gcctcagtgagcgagcgagcgcgcagctgcctgcaggggcgcctgatgcg gtattactccttacgcatctgtgcggtatttcacaccgcatacgtcaaag caaccatagtacgcgccctgtagcggcgcattaagcgcggcgggtgtggt ggttacgcgcagcgtgaccgctacacttgccagcgccctagcgcccgctc catcgattcaccatccatctcgccacgacgccggcatccccgtcaagctc taaatcgggggctccattagggaccgatttagtgctttacggcacctcga ccccaaaaaacttgatttgggtgatggttcacgtagtgggccatcgccct gatagacggtttttcgccctttgacgaggagtccacgttattaatagtgg actatgaccaaactggaacaacactcaaccctatctcgggctattcattg atttataagggattttgccgatttcggcctattggttaaaaaatgagctg atttaacaaaaatttaacgcgaattttaacaaaatattaacgtttacaat tttatggtgcactctcagtacaatctgctctgatgccgcatagttaagcc agccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctg ctcccggcatccgcttacagacaagctgtgaccgtctccgggagctgcat gtgtcagaggttttcaccgtcatcaccgaaacgcgcgagacgaaagggcc tcgtgatacgcctatttttataggttaatgtcatgataataatggtttct tagacgtcaggtggcactatcggggaaatgtgcgcggaacccctatttga tattatctaaatacattcaaatatgtatccgctcatgagacaataaccct gataaatgcttcaataatattgaaaaaggaagagtatgagtattcaacat ttccgtgtcgcccttattcccttttttgcggcattttgccttcctgttat gctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagagggt gcacgagtgggttacatcgaactggatctcaacagcggtaagatcatgag agattcgccccgaagaacgattccaatgatgagcacattaaagactgcta tgtggcgcggtattatcccgtattgacgccgggcaagagcaactcggtcg ccgcatacactattctcagaatgacttggttgagtactcaccagtcacag aaaagcatcttacggatggcatgacagtaagagaattatgcagtgctgcc ataaccatgagtgataacactgcggccaacttacactgacaacgatcgga ggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaac tcgccttgatcgttgggaaccggagctgaatgaagccataccaaacgacg agcgtgacaccacgatgcctgtagcaatggcaacaacgttgcgcaaacta ttaactggcgaactacttactctagcttcccggcaacaattaatagactg gatggaggcggataaagttgcaggaccacttctgcgctcggcccttccgg ctggctggtttattgctgataaatctggagccggtgagcgtgggtctcgc ggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagt tatctacacgacggggagtcaggcaactatggatgaacgaaatagacaga tcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaa gtttactcatatatactttagattgatttaaaacttcatttttaatttaa aaggatctaggtgaagatcctttttgataatctcatgaccaaaatccctt aacgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaa ggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaac aaaaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctac caactctttttccgaaggtaactggcttcagcagagcgcagataccaaat actgtccttctagtgtagccgtagttaggccaccacttcaagaactctgt agcaccgcctacatacctcgctctgctaatcctgttaccagtggctgctg ccagtggcgataagtcgtgtcttaccgggttggactcaagacgatagtta ccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagcc cagcttggagcgaacgacctacaccgaactgagatacctacagcgtgagc tatgagaaagcgccacgcttcccgaagggagaaaggcggacaggtatccg gtaagcggcagggtcggaacaggagagcgcacgagggagcttccaggggg aaacgcctggtatctttatagtcctgtcgggtttcgccacctctgacttg agcgtcgatttttgtgatgctcgtcaggggggcggagcctatggaaaaac gccagcaacgcggcctttttacggttcctggccttttgctggccttttgc tcacatgt 3′
TABLE-US-00008 TABLE III Restriction map of AAV-PGK1-HA-Xbp-1-WPRE PGK1 189 to 528 nt Tag HA 1219 to 1248 nt XBP1 1249 to 2367 nt WPRE 2378 to 2967 nt CCTGCAGGCAGCTGCGCGCTCGCTCGCTCACTGAGGCCGCCCGGGCAAAGCCCGGGCGTCGGGCGACCTTTGGTCGCCCGGCCTCAGTGAGCGAGCGAGC <100 GGACGTCCGTCGACGCGCGAGCGAGCGAGTGACTCCGGCGGGCCCGTTTCGGGCCCGCAGCCCGCTGGAAACCAGCGGGCCGGAGTCACTCGCTCGCTCG 10 20 30 40 50 60 70 80 90 GCGCAGAGAGGGAGTGGCCAACTCCATCACTAGGGGTTCCTGCGGCCGCACGCGCGATCACGAGACTAGCCTCGACGATGGTCGAGTACCGGGTAGGGGA <200 CGCGTCTCTCCCTCACCGGTTGAGGTAGTGATCCCCAAGGACGCCGGCGTGCGCGCTAGTGCTCTGATCGGAGCTGCTACCAGCTCATGGCCCATCCCCT 110 120 130 140 150 160 170 180 190 GGCGCTTTTCCCAAGGCAGTCTGGAGCATGCGCTTTAGCAGCCCCGCTGGGCACTTGGCGCTACACAAGTGGCCTCTGGCCTCGCACACATTCCACATCC <300 CCGCGAAAAGGGTTCCGTCAGACCTCGTACGCGAAATCGTCGGGGCGACCCGTGAACCGCGATGTGTTCACCGGAGACCGGAGCGTGTGTAAGGTGTAGG 210 220 230 240 250 260 270 280 290 <PGK Prom | ACCGGTAGGCGCGAACCGGCTCCGTTCTTTGGTGGCCCCTTCGCGCCACCTTCTACTCCTCCCCTAGTCAGGAAGTTCCCCCCCGCCCCGCAGCTCGCGT <400 TGGCCATCCGCGGTTGGCCGAGGCAAGAAACCACCGGGGAAGCGCGGTGGAAGATGAGGAGGGGATCAGTCCTTCAAGGGGGGGCGCGGCGTCGAGCGCA 310 320 330 340 350 360 370 380 390 CGTGCAGGACGTGACAAATGGAAGTAGCACGTCTCACTAGTCTCGTGCAGATGGACAGCAGCGGTGAGCAAATGGAAGCGGGTAGGCGTTTGGGGAGCGG <500 GCACGTCCTGCAGTGTTTACCTTCATCGTGCAGAGTGATCAGAGCACGTGTACCTGTCGTGGGGACTCGTTACTCTTCGCCCATCCGGAAACCCCGTCGC 410 420 430 440 450 460 470 480 490 CCAATAGCAGCTTTGCTCCTTCGCTTTCTGGGCTCAGAGGCTGGGAAGGGGTGGGTCCGGGGGCGGGCTCAGGGGCGGGCTCAGGGGCGGGGCGGGCGCC <600 GGTTATCGTCGAAACGAGGAAGCGAAAGACCCGAGTCTCCGACCCTTCCCCACCCAGGCCCCCGCCCGAGTCCCCGCCCGAGTCCCCGCCCGCCCGCGGG 510 520 530 540 550 560 570 580 590 CGAAGGTCCTCCGGAGGCCCGGCATTCTGCACGCTTCAAAAGCGCACGTCTGCCGCGCTGTTCTCCTCTTCCTCATCTCCGGGCTTTCGACCTCTAGCGG <700 GCTTCCAGGAGGCCTCCGGGCCGTAAGACGTGCGAAGTTTTCGCGTGCAGACGGCGGCGACAAGAGGAGAAGGAGTAGAGGCCCGGAAAGCTGGAGATCG 610 620 630 640 650 660 670 680 690 GGATCGGATTCGAATCCCGGCCGGGAACGGTGCATTGGAACGCGGATTCCCCGTGCCAAGAGTGACGTAAGTACCGCCTATAGAGTCTATAGGCCCACAA <800 CCTAGCCTAAGCTTAGGGCCGGCCCTTGCCACGTAACCTTGCGCCTAAGGGGCACGGTTCTCACTGCATTCATGGCGGATATCTCAGATATCCGGGTGTT 710 720 730 740 750 760 770 780 790 AAAATGCTTTCTTCTTTTAATATACTTTTTTGTTTATCTTATTTCTAATACTTTCCCTAATCTCTTTCTTTCAGGGCAATAATGATACAATGTATCATGC <900 TTTTACGAAAGAAGAAAATTATATGAAAAAACAAATAGAATAAAGATTATGAAAGGGATTAGAGAAAGAAAGTCCCGTTATTACTATGTTACATAGTACG 810 820 830 840 850 860 870 880 890 CTCTTTGCACCATTCTAAAGAATAACAGTGATAATTTCTGGGTTAAGGCAATAGCAATATTTCTGCATATAAATATTTCTGCATATAAATTGTAACTGAT <1000 GAGAAACGTGGTAAGATTTCTTATTGTCACTATTAAAGACCCAATTCCGTTATCGTTATAAAGACGTATATTTATAAAGACGTATATTTAACATTGACTA 910 920 930 940 950 960 970 980 990 GTAAGAGGTTTCATATTGCTAATAGCAGCTACAATCCAGCTACCATTCTGCTTTTATTTTATGGTTGGGATAAGGCTGGATTATTCTGAGTCCAAGCTAG <1100 CATTCTCCAAAGTATAACGATTATCGTCGATGTTAGGTCGATGGTAAGACGAAAATAAAATACCAACCCTATTCCGACCTAATAAGACTCAGGTTCGATC 1010 1020 1030 1040 1050 1060 1070 1080 1090 GCCCTTTTGCTAATCATGTTCATACCTCTTATCTTCCTCCCACAGCTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTGG <1200 CGGGAAAACGATTAGTACAAGTATGGAGAATAGAAGGAGGGTGTCGAGGACCCGTTGCACGACCAGACACACGACCGGGTAGTGAAACCGTTTCTTAACC 1110 1120 1130 1140 1150 1160 1170 1180 1190 HA tag | GATTCGAACATCGATGAGATGTACCCATACGATGTTCCAGATTACGCAATGGTGGTGGTGGCAGCGGCGCCGAGCGCGGCCACGGCGGCCCCCAAAGTGC <1300 CTAAGCTTGTAGCTACTCTACATGGGTATGCTACAAGGTCTAATGCGTTACCACCACCACCGTCGCCGCGGCTCGCGCCGGTGCCGCCGGGGGTTTCACG 1210 1220 1230 1240 1250 1260 1170 1280 1290 TACTCTTATCTGGCCAGCCCGCCTCCGGCGGCCGGGCGCTGCCGCTCATGGTACCCGGTCCGCGGGCAGCAGGGTCGGAGGCGAGCGGGACACCGCAGGC <1400 ATGAGAATAGACCGGTCGGGCGGAGGCCGCCGGCCCGCGACGGCGAGTACCATGGGCCAGGCGCCCGTCGTCCCAGCCTCCGCTCGCCCTGTGGCGTCCG 1310 1320 1330 1340 1350 1360 1370 1380 1390 TCGCAAGCGGCAGCGGCTCACGCACCTGAGCCCGGAGGAGAAAGCGCTGCGGAGGAAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAGAAAG <1500 AGCGTTCGCCGTCGCCGAGTGCGTGGACTCGGGCCTCCTCTTTCGCGACGCCTCCTTTGACTTTTTGTCTCATCGTCGCGTCTGACGAGCTCTATCTTTC 1410 1420 1430 1440 1450 1460 1470 1480 1490 AAAGCCCGGATGAGCGAGCTGGAGCAGCAAGTGGTGGATTTGGAAGAAGAGAACCACAAACTCCAGCTAGAAAATCAGCTTTTACGGGAGAAAACTCACG <1600 TTTCGGGCCTACTCGCTCGACCTCGTCGTTCACCACCTAAACCTTCTTCTCTTGGTGTTTGAGGTCGATCTTTTAGTCGAAAATGCCCTCTTTTGAGTGC 1510 1520 1530 1540 1550 1560 1570 1580 1590 GCCTTGTGGTTGAGAACCAGGAGTTAAGAACACGCTTGGGAATGGACACGCTGGATCCTGACGAGGTTCCAGAGGTGGAGGCCAAGGGGAGTGGAGTAAG <1700 CGGAACACCAACTCTTGGTCCTCAATTCTTGTGCGAACCCTTACCTGTGCGACCTAGGACTGCTCCAAGGTCTCCACCTCCGGTTCCCCTCACCTCATTC 1610 1620 1630 1640 1650 1660 1670 1680 1690 GCTGGTGGCCGGGTCTGCTGAGTCCGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATGGACTCTGACACTGTTGCCTCTTCAGAT <1800 CGACCACCGGCCCAGACGACTCAGGCGTCGTCCACGTCCGGGTCAACAGTGGAGGGGTCTTGTAGAAGGGTACCTGAGACTGTGACAACGGAGAAGTCTA 1710 1720 1730 170 1750 1760 1770 1780 1790 TCTGAGTCTGATATCCTTTTGGGCATTCTGGACAAGTTGGACCCTGTCATGTTTTTCAAATGTCCTTCCCCAGAGTCTGCTAGTCTGGAGGAACTCCCAG <1900 AGACTCAGACTATAGGAAAACCCGTAAGACCTGTTCAACCTGGGACAGTACAAAAAGTTTACAGGAAGGGGTCTCAGACGATCAGACCTCCTTGAGGGTC 1810 1820 1830 1840 1850 1860 1870 1880 1890 AGGTCTACCCAGAAGGACCTAGTTCCTTACCAGCCTCCCTTTCTCTGTCAGTGGGGACCTCATCAGCCAAGCTGGAAGCCATTAATGAACTCATTCGTTT <2000 TCCAGATGGGTCTTCCTGGATCAAGGAATGGTCGGAGGGAAAGAGACAGTCACCCCTGGAGTAGTCGGTTCGACCTTCGGTAATTACTTGAGTAAGCAAA 1910 1920 1930 1940 1950 1960 1970 1980 1990 TGACCATGTATACACCAAGCCTCTAGTTTTAGAGATCCCCTCTGAGACAGAGAGTCAAACTAACGTGGTAGTGAAAATTGAGGAAGCACCTCTAAGCTCT <2100 ACTGGTACATATGTGGTTCGGAGATCAAAATCTCTAGGGGAGACTCTGTCTCTCAGTTTGATTGCACCATCACTTTTAACTCCTTCGTGGAGATTCCGAG 2010 2020 2030 2040 2050 2060 2070 2080 2090 TCAGAAGAGGATCACCCTGAATTCATTGTCTCAGTGAAGAAAGAGCCTTTGGAAGATGACTTCATCCCAGAGCTGGGCATCTCAAACCTGCTTTCATCCA <2200 AGTCTTCTCCTAGTGGGACTTAAGTAACAGAGTCACTTCTTTCTCGGAAACCTTCTACTGAAGTAGGGTCTCGACCCGTAGAGTTTGGACGAAAGTAGGT 2110 2120 2130 2140 2150 2160 2170 2180 2190 GCCATTGTCTGAGACCACCTTCTTGCCTGCTGGACGCTCACAGTGACTGTGGATATGAGGGCTCCCCTTCTCCCTTCAGTGACATGTCTTCTCCACTTGG <2300 CGGTAACAGACTCTGGTGGAAGAACGGACGACCTGCGAGTGTCACTGACACCTATACTCCCGAGGGGAAGAGGGAAGTCACTGTACAGAAGAGGTGAACC 2210 2220 2230 2240 2250 2260 2270 2280 2290 TACAGACCACTCCTGGGAGGATACTTTTGCCAATGAACTTTTCCCCCAGCTGATTAGTGTCTAAAGATCTATTCCGATAATCAACCTCTGGATTACAAAA <2400 ATGTCTGGTGAGGACCCTCCTATGAAAACGGTTACTTGAAAAGGGGGTCGACTAATCACAGATTTCTAGATAAGGCTATTAGTTGGAGACCTAATGTTTT 2310 2320 2330 2340 2350 2360 2370 2380 2390 TTTGTGAAAGATTGACTGGTATTCTTAACTATGTTGCTCCTTTTACGCTATGTGGATACGCTGCTTTAATGCCTTTGTATCATGCTATTGCTTCCCGTAT <2500 AAACACTTTCTAACTGACCATAAGAATTGATACAACGAGGAAAATGCGATACACCTATGCGACGAAATTACGGAAACATAGTACGATAACGAAGGGCATA 2410 2420 2430 2440 2450 2460 2470 2480 2490 GGCTTTCATTTTCTCCTCCTTGTATAAATCCTGGTTGCTGTCTCTTTATGAGGAGTTGTGGCCCGTTGTCAGGCAACGTGGCGTGGTGTGCACTGTGTTT <2600 CCGAAAGTAAAAGAGGAGGAACATATTTAGGACCAACGACAGAGAAATACTCCTCAACACCGGGCAACAGTCCGTTGCACCGCACCACACGTGACACAAA 2510 2520 2530 2540 2550 2560 2570 2580 2590 GCTGACGCAACCCCCACTGGTTGGGGCATTGCCACCACCTGTCAGCTCCTTTCCGGGACTTTCGCTTTCCCCCTCCCTATTGCCACGGCGGAACTCATCG <2700 CGACTGCGTTGGGGGTGACCAACCCCGTAACGGTGGTGGACAGTCGAGGAAAGGCCCTGAAAAGCGAAAGGGGAGGGATAACGGTGCCGCCTTGAGTAGC 2610 2620 2630 2640 2650 2660 2670 2680 2690 CCGCCTGCCTTGCCCGCTGCTGGACAGGGGCTCGGCTGTTGGGCACTGACAATTCCGTGGTGTTGTCGGGGAAGCTGACGTCCTTTCCATGGCTGCTCGC <2800 GGCGGACGGAACGGGCGACGACCTGTCCCCGAGCCGACAACCCGTGACTGTTAAGGCACCACAACAGCCCCTTCGACTGCAGGAAAGGTACCGACGAGCG 2710 2720 2730 2740 2750 2760 2770 2780 2790 <FactorXa site | CTGTGTTGCCACCTGGATTCTGCGCGGGACGTCCTTCTGCTACGTCCCTTCGGCCCTCAATCCAGCGGACCTTCCTTCCCGCGGCCTGCTGCCGGCTCTG <2900 GACACAACGGTGGACCTAAGACGCGCCCTGCAGGAAGACGATGCAGGGAAGCCGGGAGTTAGGTCGCCTGGAAGGAAGGGCGCCGGACGACGGCCGAGAC 2810 2820 2830 2840 2850 2860 2870 2880 2890 CGGCCTCTTCCGCGTCTTCGCCTTCGCCCTCAGACGAGTCGGATCTCCCTTTGGGCCGCCTCCCCGCATGGATCTACGGGTGGCATCCCTGTGACCCCTC <3000 GCCGGAGAAGGCGCAGAAGCGGAAGCGGGAGTCTGCTCAGCCTAGAGGGAAACCCGGCGGAGGGGCGTACCTAGATGCCCACCGTAGGGACACTGGGAGG 2910 2920 2930 2940 2950 2960 2970 2980 2990 CCCAGTGCCTCTCCTGGGGCTGGAAGTTGCCACTCCAGTGCCCACCAGCCTTGTCCTAATAAAATTAAGTTGCATCATTTTGTGTGACTAGGTGTGGTTC <3100 GGGTCAGGGAGAGGACCCGGACCTTCAACGGTGAGGTCACGGGTGCTCGCAACAGCATTATTTTAATTCAACGTAGTAAAACAGACTGATCCACAGGAAG 3010 3020 3030 3040 3050 3060 3070 3080 3090 TATAATATTATGGGGTGGACGGGGGTGGTATGGAGCAAGGGGCAAGTTGGGAAGACAAGCTGTAGGGCCTGCGGGGTCTATTGCGAACCAAGCTGGAGTG <3200 ATATTATAATACCCCACCTCCCCCCACCATACCTCGTTCCCCGTTCAACCCTTCTGTTGGACATCGGGGACCCCCCAGATAACCCTTGGTTCGACCTCAC 3110 3120 3130 3140 3150 3160 3170 3180 3190 >AGH poly signsl | CAGTGCCACAATCTTGGCTCAGTGCAATCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTGCGGAGTTGTTGGGATTCCAGCCATGCATGAC <3300 GTCACCGTGTTAGAACCGAGTGGCGTTAGAGGCGGAGGACCCAAGTTCGCTAAGAGGACGAGTCGGAGGGCTCAACAACCGTAAGGTCGTACGTACTGAA 3210 3220 3230 3240 3250 3260 3270 3280 3290 CAGGGTCAGCTAATTTTTGTTTTTTTGGTAGAGACGGGGTTTCACCATATTGGCCAGGCTGGTCTCCAACTCGTAATCTCAGGTGATCTACCGACCTTTG <3400 GTCCGAGTCGATTAAAAACAAAAAAACCATCTCTGCCCCAAAGTGGTATAACCGGTCCGACCAGAGGTTGAGGATTAGAGTCCACTAGATGGGTGGAACC 3310 3320 3330 3340 3350 3360 3370 3380 3390 CCTCCCAAATTGCTGGGATTACAGGCGTGAACCACTGCTCCCTTGCCTGTCCTTCTGATTTTGTAGGTAACCACGTGCGGACCGAGCGGCCGCAGGAACC <3500 GGACGGTTTAACGACCCTAATGTCCGCACTTCGTGACGAGGGAAGGGACATGAACACTAAAACATCCATTGGTGCACGCCTGGCTCGCCGGCGTCCTTGG 3410 3420 3430 3440 3450 3460 3470 3480 3490 CCTAGTGATGGAGTTGGCCACTCCCTCTCTGCGCGCTCGCTCGCTCACTGAGGCCGGGCGACCAAAGGTCGCCCACGCCCGGGCTTTGCCCGGGCGGCCC <3600 GGATCACTACCTCAACCGGTGAGGGAGAGACGCGCGAGCGAGCGAGTGACTCCGGCCCGCTGGTTTCCAGCGGGCTGCGGGCCCAAACGGGCCCGCCGGG 3510 3520 3530 3540 3550 3560 3570 3580 3590 TCAGTGAGCGAGCGAGCGCGCAGCTGCCTGCAGGGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATACGTCAAAGCA <3700 AGTCACTCGCTCGCTCGCGCGTCGACGGACGTCCCCGCGGACTACGCCATAAAAGAGGAATGCGTAGACACGCCATAAAGTGTGGCGTATGCAGTTTCGT 3610 3620 3630 3640 3650 3660 3670 3680 3690 ACCATAGTACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCT <3800 TGGTATCATGCGCGGGACATCGCCGCGTAATTCGCGCCGCCCACACCACCAATGCGCGTCGCACTGGCGATGTGAACGGTCGCGGGATCGCGGGCGAGGA 3710 3720 3730 3740 3750 3760 3770 3780 3790 TTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCC <3900 AAGCGAAAGAAGGGAAGGAAAAGAGCGGTGCAAGCGGCCGAAAGGGGCAGTTCGAGATTTAGCCCCCGAGGGAAATCCCAAGGCTAAATCACGAAATGCG 3810 3820 3830 3840 3850 3860 3870 3880 3890 >M13 origin <F1 ori | | ACCTCGACCCCAAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTT <4000 TGGAGCTGGGGTTTTTTGAACTAAACCCACTACCAAGTGCATCACCCGGTAGCGGGACTATCTGCAAAAAGCGCGAAACTGCAACCTCAGGTGCAAGAAA 3910 3920 3930 3940 3950 3960 3970 3980 3990 TAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCGTATTGGTTA <4100 ATTATCACCTGAGAACAAGGTTTGACCTTGTTGTGAGTTGGGATAGAGCCCGATAAGAAAACTAAATATTCCCTAAAACGGCTAAAGCCGGATAACCAAT 4010 4020 4030 4040 4050 4060 4070 4080 4090 AAAAATGAGCTGATTTAACAAAAATTTAACGCGAATTTTAACAAAATATTAACGTTTACAATTTTATGGTGCACTCTCAGTACAATCTGCTCTGATGCCG <4200 TTTTTACTCGACTAAATTGTTTTTAAATTGCGCTTAAAATTGTTTTATAATTGCAAATGTTAAAATACCACGTGAGAGTCATGTTAGACGAGACTACGGC 4110 4120 4130 4140 4150 4160 4170 4180 4190 CATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTC <4300 GTATCAATTCGGTCGGGGCTGTGGGCGGTTGTGGGCGACTGCGCGGGACTGCCCGAACAGACGAGGGCCGTAGGCGAATGTCTGTTCGACACTGGCAGAG 4210 4220 4230 4240 4250 4260 4270 4280 4290 CGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCACCGAAACGCGCGAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATA <4400 GCCCTCGACGTACACAGTCTCCAAAAGTGGCAGTAGTGGCTTTGCGCGCTCTGCTTTCCCGGAGACACTATGCGGATAAAAATATCCAATTACAGTACTA 4310 4320 4330 4340 4350 4360 4370 4380 4390 ATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCA <4500 TATTACCAAAGAATCTGCAGTCCACCGTGAAAAGCCCCTTTACACGCGCCTTGGGGATAAACAAATAAAAAGATTTATGTAAGTTTATAGATAGGCGAGT 4410 4420 4430 4440 4450 4460 4470 4480 4490 TGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTGCGGACATT <4600 ACTCTGTTATTGGGACTATTTACGAAGTTATTATAACTTTTTCCTTCTCATACTCATAAGTTGTAAAGGCACAGCGGGAATAAGGGAAAAAACGCCGTAA 4510 4520 4530 4540 4550 4560 4570 4580 4590 TTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAAC <4700 AACGGAAGGACAAAAACGAGTGGGTCTTTGCGACCACTTTCATTTTCTACGACTTCTAGTCAACCCACGTGCTCACCCAATGTAGCTTGACCTAGAGTTG 4610 4620 4630 4640 4650 4660 4670 4680 4690 AGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTCGCGCGGTATTATCCCGTATTTGACG <4800 TCGCCATTCTAGGAACTCTCAAAAGCGGGGCTTCTTGCAAAAGGTTACTACTCGTGAAAATTTCAAGACGATACACCGCGCCATAATAGGGCATAACTGG 4710 4720 4730 4740 4750 4760 4770 4780 4790 CCGGGCAAGGGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGATGGCATGACAAGT <4900 GGCCCGTTCTCGTTGAGCCAGCGCCGTATGTGATAAGAGTCTTACTGAACCAACTCATGAGTGGTCAGTGTCTTTTCGTAGAATGCCTACCGTACTGTCA 4810 4820 4830 4840 4850 4860 4870 4880 4890 AAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCCGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTG <5000 TTCTCTTAATACGTCACGACGGTATTGGTACTCACTATTGTGACGCGGGTTGAATGAAGACTGTTGCTAGCCTCCTGGCTTCCTCGATTGGCGAAAAAAC 4910 4920 4930 4940 4950 4960 4970 4980 4990 >AmpR | CACAACATGGGCGATCATGTAACTCGCCTTGATCGTTGGGAACCGAGCTGAATGAACCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGTGCAA <5100 GTGTTGTACCCCCTAGTACATTGAGCGGAACTAGCAACCCTTGGCCTCGACTTACTTCGGTATGGTTTGCTCCTCGCAGTGTGGTGCTACGGACATCGTT 5010 5020 5030 5040 5050 5060 5070 5080 5090 TGGCAACAACGTTGCGCAAACTATTAACTCGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACC <5200 ACCGTTGTTGCAACGCGTTTGATAATTGACCGCTTGATGAATGAGATCGAAGGGCCGTTGTTAATTATCTGACCTACCTCCGCCTATTTCAACGTGCTGG 5110 5120 5130 5140 5150 5160 5170 5180 5190 ACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGGTGATAAATCTGGAGCCGGTGACCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGAT <5300 TGAAGACGCGAGCCGGGAAGGCCGACCGACCAAATAACGACTATTTAGACCTCGGCCACTCCCACCCAGAGCCCCATAGTAACGTCGTGACCGCGGTCTA 5210 5220 5230 5240 5250 5260 5270 5280 5290 GGTAAAGCCGTCCCGTATCGTACTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACGATCGCTGAGATAGGTGCCTCACTGATTA <5400 CCATTCGGGAGGGCATACCATCAATAGATGTGCTGCCCCTCAGTCCGTTGATACCTACTTGCTTTATCTGTCTAGCGACTCTATCCACGGAGTGACTAAT 5310 5320 5330 5340 5350 5360 5370 5380 5390 AGCATTGGTAACTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGA <5500 TCGTAACCATTGACAGTCTGGTTCAAATGAGTATATATGAAATCTAACTAAATTTTGAAGTAAAAATTAAATTTTCCTAGATCCACTTCTAGGAAAAACT 5410 5420 5430 5440 5450 5460 5470 5480 5490 TAATCTCATGACCAAAATCCCTTAACTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTTCTG <5600 ATTAGAGTACTGGTTTTAGGGAATTGCACTCAAAAGCAAGGTGACTCGCAGTCTGGGGCATCTTTTCTATTTCCTAGAAGAACTCTAGGAAAAAAAAGAC 5510 5520 5530 5540 5550 5560 5570 5580 5590 CGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGATCAAGAGCTACCAACTCTTTTTCCCGAAGGTAACTGGCT <5700 GCGCATTAGACGACGAACGTTTGTTTTTTTGGTGGCGATGGTCGCCACCAAACAAACGGCCTAGTTCTCGATGGTTGAGAAAAAGGCTTCCATTGACCGA 5610 5620 5630 5640 5650 5660 5670 5680 5690 TCAGCAGAGCGCAGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCT <5800 AGTCGTCTCGCGTCTATGGTTTTATGACAGGAAGATCACATCGGCATCAATCCGGTGGTGAAGTTCTTGAGACATCGTGGCGGATGTATGGAGCGAGCGA 5710 5720 5730 5740 5750 5760 5770 5780 5790 >ColE1 origin | AATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATTGTTACCGGATAAGGCGCAGCGGTCGGGCTGA <5900 5810 5820 5830 5840 5850 5860 5870 5880 5890 ACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACGTACAGCGTGAGCTATGAGAAAGCGCCACCTTCCCGAAGA <6000 TGCCCCCCAAGCACGTGTGTCGGGTCGAACCTCGCTTGCTGGATGTGGCTTGACTCTATGGATGTCGCACTCGATACTCTTTCGCGGTGCGAAGGGCTTC 5910 5920 5930 5940 5950 5960 5970 5980 5990 GGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGT <6100 CCTCTTTCCGCCTGTCCATAGGCCATTCGCGGTCCCAGCCTTGTCCTCTCGCGTGCTCCCTCGAAGGTCCCCCTTTGCGGACCATAGAAAATATCAGGAC 6010 6020 6030 6040 6050 6060 6070 6080 6090 CGGGTTTCGGCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTC <6200 GCCCAAAGCGGTGGAGACTGAACTCGCAGCTAAAAACACTACGAGCAGTCCCCCCGCCTCGGATACCTTTTTGCGGTCGTTGCGCCGGAAAAATGCCAAG 6110 6120 6130 6140 6150 6160 6170 6180 6190 CTGGCCTTTTGCTGGCCTTTTGCTCACATGT <6231 GACCGGAAAACGACCGGAAAACGAGTGTACA 6210 6220 6230 Features: ColE1: [5560:6183] F1 ori: [4154:3714] M13 origin [3709:4161] AmpR: [4749:5408] hGE polyA signal: [2977:3257] mPGK Prom: [189:528] Amp prom: [4481:4509] BA tag:[1222:1248] FactorXa Site: [2861:2850]
TABLE-US-00009 TABLE IV Xbp1s (Mouse) ORIGIN 1 ctagggtaaa accgtgagac tcggtctgga aatctggcct gagaggacag cctggcaatc 61 ctcagccggg gtggggacgt ctgccgaaga tccttggact ccagcaacca gtggtcgcca 121 ccgtccatcc accctaaggc ccagtttgca cggcggagaa cagctgtgca gccacgctgg 181 acactcaccc cgcccgagtt gagcccgccc ccgggactac aggaccaata agtgatgaat 241 atacccgcgc gtcacggagc accggccaat cgcggacggc cacgacccta gaaaggctgg 301 gcgcggcagg aggccacggg gcggtggcgg cgctggcgta gacgtttcct ggctatggtg 361 gtggtggcag cggcgccgag cgcggccacg gcggccccca aagtgctact cttatctggc 421 cagcccgcct ccggcggccg ggcgctgccg ctcatggtac ccggtccgcg ggcagcaggg 481 tcggaggcga gcgggacacc gcaggctcgc aagcggcagc ggctcacgca cctgagcccg 541 gaggagaaag cgctgcggag gaaactgaaa aacagagtag cagcgcagac tgctcgagat 601 agaaagaaag cccggatgag cgagctggag cagcaagtgg tggatttgga agaagagaac 661 cacaaactcc agctagaaaa tcagctttta cgggagaaaa ctcacggcct tgtggttgag 721 aaccaggagt taagaacacg cttgggaatg gacacgctgg atcctgacga ggttccagag 781 gtggaggcca aggggagtgg agtaaggctg gtggccgggt ctgctgagtc cgcagcaggt 841 gcaggcccag ttgtcacctc cccagaacat cttcccatgg actctgacac tgttgcctct 901 tcagattctg agtctgatat ccttttgggc attctggaca agttggaccc tgtcatgttt 961 ttcaaatgtc cttccccaga gtctgctagt ctggaggaac tcccagaggt ctacccagaa 1021 ggacctagtt ccttaccagc ctccctttct ctgtcagtgg ggacctcatc agccaagctg 1081 gaagccatta atgaactcat tcgttttgac catgtataca ccaagcctct agttttagag 1141 atcccctctg agacagagag tcaaactaac gtggtagtga aaattgagga agcacctcta 1201 agctcttcag aagaggatca ccctgaattc attgtctcag tgaagaaaga gcctttggaa 1261 gatgacttca tcccagagct gggcatctca aacctgcttt catccagcca ttgtctgaga 1321 ccaccttctt gcctgctgga cgctcacagt gactgtggat atgagggctc cccttctccc 1381 ttcagtgaca tgtcttctcc acttggtaca gaccactcct gggaggatac ttttgccaat 1441 gaacttttcc cccagctgat tagtgtctaa agagccacat aacactgggc ccctttccct 1501 gaccatcaca ttgcctagag gatagcatag gcctgtctct ttcgttaaaa gccaaagtag 1561 aggctgtctg gccttagaag aattcctcta aagtatttca aatctcatag atgacttcca 1621 agtattgtcg tttgacactc agctgtctaa ggtattcaaa ggtattccag tactacagct 1681 tttgagattc tagtttatct taaaggtggt agtatactct aaatcgcagg gagggtcatt 1741 tgacagtttt ttcccagcct ggcttcaaac tatgtagccg aggctaggca gaaacttctg 1801 accctcttga ccccacctcc caagtgctgg gcttcaccag gtgtgcacct ccacacctgc 1861 ccccccgaca tgtcaggtgg acatgggatt catgaatggc ccttagcatt tctttctcca 1921 ctctctgctt cccaggtttc gtaacctgag ggggcttgtt ttcccttatg tgcattttaa 1981 atgaagatca agaatctttg taaaatgatg aaaatttact atgtaaatgc ttgatggatc 2041 ttcttgctag tgtagcttct agaaggtgct ttctccattt atttaaaact acccttgcaa 2101 ttaaaaaaaa agcaacacag cgtcctgttc tgtgatttct agggctgttg taatttctct 2161 ttattgttgg ctaaaggagt aatttatcca actaaagtga gcataccact ttttaaagtc 2221 aaaaaaaaaa aaaaaaaa
TABLE-US-00010 TABLE V Xbp1u (Mouse) ORIGIN 1 ctagggtaaa accgtgagac tcggtctgga aatctggcct gagaggacag cctggcaatc 61 ctcagccggg gtggggacgt ctgccgaaga tccttggact ccagcaacca gtggtcgcca 121 ccgtccatcc accctaaggc ccagtttgca cggcggagaa cagctgtgca gccacgctgg 181 acactcaccc cgcccgagtt gagcccgccc ccgggactac aggaccaata agtgatgaat 241 atacccgcgc gtcacggagc accggccaat cgcggacggc cacgacccta gaaaggctgg 301 gcgcggcagg aggccacggg gcggtggcgg cgctggcgta gacgtttcct ggctatggtg 361 gtggtggcag cggcgccgag cgcggccacg gcggccccca aagtgctact cttatctggc 421 cagcccgcct ccggcggccg ggcgctgccg ctcatggtac ccggtccgcg ggcagcaggg 481 tcggaggcga gcgggacacc gcaggctcgc aagcggcagc ggctcacgca cctgagcccg 541 gaggagaaag cgctgcggag gaaactgaaa aacagagtag cagcgcagac tgctcgagat 601 agaaagaaag cccggatgag cgagctggag cagcaagtgg tggatttgga agaagagaac 661 cacaaactcc agctagaaaa tcagctttta cgggagaaaa ctcacggcct tgtggttgag 721 aaccaggagt taagaacacg cttgggaatg gacacgctgg atcctgacga ggttccagag 781 gtggaggcca aggggagtgg agtaaggctg gtggccgggt ctgctgagtc cgcagcactc 841 agactatgtg cacctctgca gcaggtgcag gcccagttgt cacctcccca gaacatcttc 901 ccatggactc tgacactgtt gcctcttcag attctgagtc tgatatcctt ttgggcattc 961 tggacaagtt ggaccctgtc atgtttttca aatgtccttc cccagagtct gctagtctgg 1021 aggaactccc agaggtctac ccagaaggac ctagttcctt accagcctcc ctttctctgt 1081 cagtggggac ctcatcagcc aagctggaag ccattaatga actcattcgt tttgaccatg 1141 tatacaccaa gcctctagtt ttagagatcc cctctgagac agagagtcaa actaacgtgg 1201 tagtgaaaat tgaggaagca cctctaagct cttcagaaga ggatcaccct gaattcattg 1261 tctcagtgaa gaaagagcct ttggaagatg acttcatccc agagctgggc atctcaaacc 1321 tgctttcatc cagccattgt ctgagaccac cttcttgcct gctggacgct cacagtgact 1381 gtggatatga gggctcccct tctcccttca gtgacatgtc ttctccactt ggtacagacc 1441 actcctggga ggatactttt gccaatgaac ttttccccca gctgattagt gtctaaagag 1501 ccacataaca ctgggcccct ttccctgacc atcacattgc ctagaggata gcataggcct 1561 gtctctttcg ttaaaagcca aagtagaggc tgtctggcct tagaagaatt cctctaaagt 1621 atttcaaatc tcatagatga cttccaagta ttgtcgtttg acactcagct gtctaaggta 1681 ttcaaaggta ttccagtact acagcttttg agattctagt ttatcttaaa ggtggtagta 1741 tactctaaat cgcagggagg gtcatttgac agttttttcc cagcctggct tcaaactatg 1801 tagccgaggc taggcagaaa cttctgaccc tcttgacccc acctcccaag tgctgggctt 1861 caccaggtgt gcacctccac acctgccccc ccgacatgtc aggtggacat gggattcatg 1921 aatggccctt agcatttctt tctccactct ctgcttccca ggtttcgtaa cctgaggggg 1981 cttgttttcc cttatgtgca ttttaaatga agatcaagaa tctttgtaaa atgatgaaaa 2041 tttactatgt aaatgcttga tggatcttct tgctagtgta gcttctagaa ggtgctttct 2101 ccatttattt aaaactaccc ttgcaattaa aaaaaaagca acacagcgtc ctgttctgtg 2161 atttctaggg ctgttgtaat ttctctttat tgttggctaa aggagtaatt tatccaacta 2221 aagtgagcat accacttttt aaagtcaaaa aaaaaaaaaa aaaa
TABLE-US-00011 TABLE VIII Xbp1s (Human) ORIGIN 1 ggcgctgggc ggctgcggcg cgcggtgcgc ggtgcgtagt ctggagctat ggtggtggtg 61 gcagccgcgc cgaacccggc cgacgggacc cctaaagttc tgcttctgtc ggggcagccc 121 gcctccgccg ccggagcccc ggccggccag gccctgccgc tcatggtgcc agcccagaga 181 ggggccagcc cggaggcagc gagcgggggg ctgccccagg cgcgcaagcg acagcgcctc 241 acgcacctga gccccgagga gaaggcgctg aggaggaaac tgaaaaacag agtagcagct 301 cagactgcca gagatcgaaa gaaggctcga atgagtgagc tggaacagca agtggtagat 361 ttagaagaag agaaccaaaa acttttgcta gaaaatcagc ttttacgaga gaaaactcat 421 ggccttgtag ttgagaacca ggagttaaga cagcgcttgg ggatggatgc cctggttgct 481 gaagaggagg cggaagccaa ggggaatgaa gtgaggccag tggccgggtc tgctgagtcc 541 gcagcaggtg caggcccagt tgtcacccct ccagaacatc tccccatgga ttctggcggt 601 attgactctt cagattcaga gtctgatatc ctgttgggca ttctggacaa cttggaccca 661 gtcatgttct tcaaatgccc ttccccagag cctgccagcc tggaggagct cccagaggtc 721 tacccagaag gacccagttc cttaccagcc tccctttctc tgtcagtggg gacgtcatca 781 gccaagctgg aagccattaa tgaactaatt cgttttgacc acatatatac caagccccta 841 gtcttagaga taccctctga gacagagagc caagctaatg tggtagtgaa aatcgaggaa 901 gcacctctca gcccctcaga gaatgatcac cctgaattca ttgtctcagt gaaggaagaa 961 cctgtagaag atgacctcgt tccggagctg ggtatctcaa atctgctttc atccagccac 1021 tgcccaaagc catcttcctg cctactggat gcttacagtg actgtggata cgggggttcc 1081 ctttccccat tcagtgacat gtcctctctg cttggtgtaa accattcttg ggaggacact 1141 tttgccaatg aactctttcc ccagctgatt agtgtctaag gaatgatcca atactgttgc 1201 ccttttcctt gactattaca ctgcctggag gatagcagag aagcctgtct gtacttcatt 1261 caaaaagcca aaatagagag tatacagtcc tagagaattc ctctatttgt tcagatctca 1321 tagatgaccc ccaggtattg tcttttgaca tccagcagtc caaggtattg agacatatta 1381 ctggaagtaa gaaatattac tataattgag aactacagct tttaagattg tacttttatc 1441 ttaaaagggt ggtagttttc cctaaaatac ttattatgta agggtcatta gacaaatgtc 1501 ttgaagtaga catggaattt atgaatggtt ctttatcatt tctcttcccc ctttttggca 1561 tcctggcttg cctccagttt taggtccttt agtttgcttc tgtaagcaac gggaacacct 1621 gctgaggggg ctctttccct catgtatact tcaagtaaga tcaagaatct tttgtgaaat 1681 tatagaaatt tactatgtaa atgcttgatg gaattttttc ctgctagtgt agcttctgaa 1741 aggtgctttc tccatttatt taaaactacc catgcaatta aaaggtacaa tgcaaaaaaa 1801 aaaaaaaaaa
TABLE-US-00012 TABLE IX Xbp1u (Human) ORIGIN 1 ggcgctgggc ggctgcggcg cgcggtgcgc ggtgcgtagt ctggagctat ggtggtggtg 61 gcagccgcgc cgaacccggc cgacgggacc cctaaagttc tgcttctgtc ggggcagccc 121 gcctccgccg ccggagcccc ggccggccag gccctgccgc tcatggtgcc agcccagaga 181 ggggccagcc cggaggcagc gagcgggggg ctgccccagg cgcgcaagcg acagcgcctc 241 acgcacctga gccccgagga gaaggcgctg aggaggaaac tgaaaaacag agtagcagct 301 cagactgcca gagatcgaaa gaaggctcga atgagtgagc tggaacagca agtggtagat 361 ttagaagaag agaaccaaaa acttttgcta gaaaatcagc ttttacgaga gaaaactcat 421 ggccttgtag ttgagaacca ggagttaaga cagcgcttgg ggatggatgc cctggttgct 481 gaagaggagg cggaagccaa ggggaatgaa gtgaggccag tggccgggtc tgctgagtcc 541 gcagcactca gactacgtgc acctctgcag caggtgcagg cccagttgtc acccctccag 601 aacatctccc catggattct ggcggtattg actcttcaga ttcagagtct gatatcctgt 661 tgggcattct ggacaacttg gacccagtca tgttcttcaa atgcccttcc ccagagcctg 721 ccagcctgga ggagctccca gaggtctacc cagaaggacc cagttcctta ccagcctccc 781 tttctctgtc agtggggacg tcatcagcca agctggaagc cattaatgaa ctaattcgtt 841 ttgaccacat atataccaag cccctagtct tagagatacc ctctgagaca gagagccaag 901 ctaatgtggt agtgaaaatc gaggaagcac ctctcagccc ctcagagaat gatcaccctg 961 aattcattgt ctcagtgaag gaagaacctg tagaagatga cctcgttccg gagctgggta 1021 tctcaaatct gctttcatcc agccactgcc caaagccatc ttcctgccta ctggatgctt 1081 acagtgactg tggatacggg ggttcccttt ccccattcag tgacatgtcc tctctgcttg 1141 gtgtaaacca ttcttgggag gacacttttg ccaatgaact ctttccccag ctgattagtg 1201 tctaaggaat gatccaatac tgttgccctt ttccttgact attacactgc ctggaggata 1261 gcagagaagc ctgtctgtac ttcattcaaa aagccaaaat agagagtata cagtcctaga 1321 gaattcctct atttgttcag atctcataga tgacccccag gtattgtctt ttgacatcca 1381 gcagtccaag gtattgagac atattactgg aagtaagaaa tattactata attgagaact 1441 acagctttta agattgtact tttatcttaa aagggtggta gttttcccta aaatacttat 1501 tatgtaaggg tcattagaca aatgtcttga agtagacatg gaatttatga atggttcttt 1561 atcatttctc ttcccccttt ttggcatcct ggcttgcctc cagttttagg tcctttagtt 1621 tgcttctgta agcaacggga acacctgctg agggggctct ttccctcatg tatacttcaa 1681 gtaagatcaa gaatcttttg tgaaattata gaaatttact atgtaaatgc ttgatggaat 1741 tttttcctgc tagtgtagct tctgaaaggt gctttctcca tttatttaaa actacccatg 1801 caattaaaag gtacaatgca
TABLE-US-00013 TABLE X Restriction map of AAV-PGK1-HA-Xbp-1(human)-WPRE- ggcggatccaattgcctaggcccaagggcgaattgtcacgactccacccc tccaggaacccctagtgatggagttggccactccctctctgcgcgctcg ctcgctcactgaggccgcccgggcaaagcccgggcgtcgggcgacctttg gtcgcccggcctcagtgagcgagcgagcgcgcagagagggagtggcccag atctgatatcatcgatgaattcaagcttcagctgctcgagttctatagtg tcacctaaatcgtatgtgtatgatacataaggttatgtattaattgtagc cgcgttctaacgacaatatgtccatatggtgcactctcagtacaatctgc tctgatgccgcatagttaagccagccccgacacccgccaacacccgctga cgcgccctgacgggcttgtctgctcccggcatccgcttacagacaagctg tgaccgtctccgggagctgcatgtgtcagaggttttcaccgtcatcaccg aaacgcgcgagacgaaagggcctcgtgatacgcctatttttataggttaa tgtcatgataataatggtttcttagacgtcaggtggcacttttcggggaa atgtgcgcggaacccctatttgtttatttttctaaatacattcaaatatg tatccgctcatgagacaataaccctgataaatgcttcaataatattgaaa aaggaagagtatgagtattcaacatttccgtgtcgcccttattccctttt ttgcggcattttgccttcctgtttttgctcacccagaaacgctggtgaaa gtaaaagatgctgaagatcagttgggtgcacgagtgggttacatcgaact ggatctcaacagcggtaagatccttgagagttttcgccccgaagaacgtt ttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctca gaatgacttggttgagtactcaccagtcacagaaaagcatcttacggatg gcatgacagtaagagaattatgcagtgctgccataaccatgagtgataac actgcggccaacttacttctgacaacgatcggaggaccgaaggagctaac cgcttttttgcacaacatgggggatcatgtaactcgccttgatcgttggg aaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactact tactctagcttcccggcaacaattaatagactggatggaggcggataaag ttgcaggaccacttctgcgctcggcccttccggctggctggtttattgct gataaatctggagccggtgagcgtgggtctcgcggtatcattgcagcact ggggccagatggtaagccctcccgtatcgtagttatctacacgacgggga gtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaactgtcagaccaagtttactcatatatact ttagattgatttaaaacttcatttttaatttaaaaggatctaggtgaaga tcctttttgataatctcatgaccaaaatcccttaacgtgagttttcgttc cactgagcgtcagaccccgtagaaaagatcaaaggatcttcttgagatcc tttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgctac cagcggtggtttgtttgccggatcaagagctaccaactctttttccgaag gtaactggcttcagcagagcgcagataccaaatactgtccttctagtgta gccgtagttaggccaccacttcaagaactctgtagcaccgcctacatacc tcgctctgctaatcctgttaccagtggctgctgccagtggcgataagtcg tgtcttaccgggttggactcagacgatagttaccggataaggcgcagcgg tcgggctgaacggggggttcgtgcacacagcccagcttggagcgaacgac ctacaccgaactgagatacctacagcgtgagcattgagaaagcgccacgc ttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcgg aacaggagagcgcacgagggagcttccagggggaaacgcctggtatcttt atagtcctgtcgggtttcgccacctctgacttgagcgtcgatttttgtga tgctcgtcaggggggcggagcctatggaaaaacgccagcaacgcggcctt tttacggttcctggccttttgctggccttttgccacatgttctttcctgc gttatcccctgattctgtggataaccgtattaccgcctttgagtgagctg ataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgag gaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggcc gattcattaatgcaggttaacctggcttatcgaaattaatacgactcact atagggagaccggcagatctgtccctctctgcgcgctcgctcgctcactg aggccgcccgggcaaagcccgggcgtcgggcgacctttggtcgcccggcc tcagtgagcgagcgagcgcgcagagagggagtggccaactccatcactag gggttccttgtagttaatgattaacccgccatgctacttatctacaattc gcccttcggacgcgtggcttcgaactaggcaattgcatgaagaatctgct tagggttaggcgttttgcgctgcttcgcgatgtacgggccagatatacgc gttgacattgattattgactagttattaatagtaatcaattacggggtca ttagttcatagcccatatatggagttccgcgttacataacttacggtaaa tggcccgcctggctgaccgcccaacgacccccgcccattgacgtcaataa tgacgtatgttcccatagtaacgccaatagggactttccattgacgtcaa tgggtggagtatttacggtaaactgcccacttggcagtacatcaagtgta tcatatgccaagtacgccccctattgacgtcaatgacggtaaatggcccg cctggcattatgcccagtacatgaccttatgggactttcctacttggcag tacatctacgtattagtcatcgctattaccatggtgatgcggttttggca gtacatcaatgggcgtggatagcggtttgactcacggggatttccaagtc tccaccccattgacgtcaatgggagtttgttttggcaccaaaatcaacgg gactttccaaaatgtcgtaacaactccgccccattgacgcaaatgggcgg taggcgtgtacggtgggaggtctatataagcagagctctctggctaacta gagaacccactgcttactggcttatcgaaattaatacgactcactatagg gagacccaagctggctagcgtttaaacttaagcttcctggctatggtggt ggtggcagccgcgccgaacccggccgacgggacccctaaagttctgcttc tgtcggggcagcccgcctccgccgccggagccccggccggccaggccctg ccgctcatggtgccagcccagagaggggccagcccggaggcagcgagcgg ggggctgccccaggcgcgcaagcgacagcgcctcacgcacctgagccccg aggagaaggcgctgaggaggaaactgaaaaacagagtagcagctcagact gccagagatcgaaagaaggctcgaatgagtgagctggaacagcaagtggt agatttagaagaagagaaccaaaaacttttgctagaaaatcagcttttac gagagaaaactcatggccttgtagttgagaaccaggagttaagacagcgc ttggggatggatgccctggttgctgaagaggaggcggaagccaaggggaa tgaagtgaggccagtggccgggtctgctgagtccgcagcaggtgcaggcc cagttgtcacccctccagaacatctccccatggattctggcggtattgac tcttcagattcagagtctgatatcctgttgggcattctggacaacttgga cccagtcatgttcttcaaatgcccttccccagagcctgccagcctggagg agctcccagaggtctacccagaaggacccagttccttaccagcctccctt tctctgtcagtggggacgtcatcagccaagctggaagccattaatgaact aattcgttttgaccacatatataccaagcccctagtcttagagataccct ctgagacagagagccaagctaatgtggtagtgaaaatcgaggaagcacct ctcagcccctcagagaatgatcaccctgaattcattgtctcagtgaagga agaacctgtagaagatgacctcgttccggagctgggtatctcaaatctgc tttcatccagccactgcccaaagccatcttcctgcctactggatgcttac agtgactgtggatacgggggttccctttccccattcagtgacatgtcctc tctgcttggtgtaaaccattcttgggaggacacttttgccaatgaactct ttccccagctgattagtgtctacccatacgatgttccagattacgcaatg taaagagccacataacactgggcccctttccctgaccatcacattgccta gaggatagcataggcctgaagggcgaattccagcacactggcggccgtta ctagagggcccgtttaaacccgctgatcacctcgactgtgccttctagtt gccagccatctgttgtttgcccctcccccgtgccttccttgaccctggaa ggtgccactcccactgtcctttcctaataaaatgaggaaattgcatcgca ttgtctgagtaggtgtcattctattctggggggtggggtggggcaggaca gcaagggggaggattgggaagacaatagcaggcatgcctgcagcggtccg gtcgactctagaggatccgaaaaaacctcccacacctccccctgaacctg aaacataaaatgaatgcaattgttgttgttaacttgtttattgcagctta taatggttacaaataaagcaatagcatcacaaatttcacaaataaagcat ttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatct tatcatgtctggatccccgcggtggcggccgcactagtcccgggttaatt aagctagcagatcttgatcacctaggcgtacgatttggccgctttacatg gtggcgaccggggatcctctagtaccaagctaattcctcacgacacctga aatggaagaaaaaaactttgaaccactgtctgaggcttgagaatgaacca agatccaaactcaaaaagggcaaattccaaggagaattacatcaagtgcc aagctggcctaacttcagtctccacccactcagtgtggggaaactccatc gcataaaacccctccccccaacctaaagacgacgtactccaaaagctcga gaactaatcgaggtgcctggacggcgcccggtactccgtggagtcacatg aagcgacggctgaggacggaaaggcccttttcctttgtgtgggtgactca cccgcccgctctcccgagcgccgcgtcctccattttgagctccctgcagc agggccgggaagcggccatctttccgctcacgcaactggtgccgaccggg ccagccttgccgcccagggcggggcgatacacggcggcgcgaggccaggc accagagcaggccggccagcttgagactacccccgtccgattctcggtgg ccgcgctcgcaggccccgcctcgccgaacatgtgcgctgggacgcacggg ccccgtcgccgcccgcggccccaaaaaccgaaataccagtgtgcagatct tggcccgcatttacaagactatcttgccagaaaaaaagcgtcgcagcagg tcatcaaaaattttaaatggctagagacttatcgaaagcagcgagacagg cgcgaaggtgccaccagattcgcacgcggcggccccagcgcccaggccag gcctcaactcaagcacgaggcgaaggggctccttaagcgcaaggcctcga actctcccacccacttccaacccgaagctcgggatcaagaatcacgtact gcagccaggtggaagtaattcaaggcacgcaagggccataacccgtaaag aggccaggcccgcgggaaccacacacggcacttacctgtgttctggcggc aaacccgttgcgaaaaagaacgttcacggcgactactgcacttatatacg gttctcccccaccctcgggaaaaaggcggagccagtacacgacatcactt tcccagtttaccccgcgccaccttctctaggcaccgg Features: XBP1s: [3257:5917-CW] cdd XBP1s: [3593:4720-CW] HA: [4721:4750-CW] L-ITR: [89:196-CW] R-ITR: [2629:2736-CW] T7: [2587:2606-CW] T7: [2532:3551-CW] SP6: [259:242-CCW] ColE1 origin: [1719:2347-CW] Amp: [908:1567-CW] SV40 late polyA: [5311:5120-CCW] Amp prom: [640:668-CW] HA tag: [4721:4747-CW]