METHODS AND APPARATUS FOR ASSAYS OF BACTERIAL SPORES
20170342455 · 2017-11-30
Inventors
Cpc classification
G01N21/6408
PHYSICS
C12Q1/04
CHEMISTRY; METALLURGY
International classification
C12Q1/04
CHEMISTRY; METALLURGY
Abstract
Described herein are methods and apparatus for assays of bacterial spores. In particular, methods and apparatus for lateral flow immunoassay for bacterial spore detection and quantification, live/dead assay for bacterial spores, lifetime-gated measurements of bacterial spores and imaging bacterial spores using an active pixel sensor, and unattended monitoring of bacterial spores in the air are described.
Claims
1-27. (canceled)
28. A method for detection of bacterial spores in air comprising: collecting an air sample; suspending the collected sample in a solution including lanthanide ions; treating the suspended sample to release DPA from the bacterial spores; exciting combined lanthanide ions and DPA to generate a luminescence characteristic of the combined lanthanide ions and DPA; and detecting luminescence to determine the presence of the bacterial spores.
29. The method of claim 28, wherein collecting an air sample comprises capturing the air sample with an aerosol sampler or impactor.
30. The method of claim 28, wherein detecting luminescence to determine the presence of the bacterial spores comprises monitoring the luminescence.
31. The method of claim 28, wherein the collecting comprises continuously sampling the air.
32. The method of claim 28, wherein detecting the luminescence to determine the presence of the bacterial spores comprises continuously monitoring the luminescence.
33. The method of claim 28, wherein suspending the collected sample in a solution comprises cooling the heated solution to increase the fraction of bound Tb-DPA complex.
34. The method of claim 28, wherein treating the collected sample to release DPA from the bacterial spores comprises microwaving the bacterial spores to heat the solution.
35. The method of claim 28, wherein treating the collected sample comprises cooling the heated solution to increase the fraction of combined lanthanide ion-DPA complex.
36. The method of claim 28, further comprising generating an alarm signal when presence of bacterial spores is detected.
37. The method of claim 28, further comprising generating an alarm signal when a concentration of bacterial spores reaches a predetermined magnitude.
38. A method for spore detection, the method comprising: combining collected samples with lanthanide ions in a solution; treating the solution comprising the collected sample to release DPA from bacterial spores; and detecting luminescence from the solution to detect bacterial spores.
39. The method of claim 38, wherein the combining is performed by suspending the collected sample in a solution, providing terbium ions in the solution and treating the solution to release DPA bacterial spores.
40. The method of claim 38, wherein the treatment comprises microwaving or sonicating the solution.
41. The method of claim 38, wherein treating the collected sample comprises cooling the heated solution to increase the fraction of combined lanthanide-DPA complex.
42. The method of claim 38, wherein the detecting is performed by detecting luminescence intensity to quantify presence of bacterial spores in the solution.
43. The method of claim 38, wherein the detecting comprises continuously monitoring the luminescence.
44. The method of claim 38, further comprising generating an alarm signal when presence of bacterial spores is detected.
45. The method of claim 38, further comprising generating an alarm signal when a concentration of bacterial spores reaches a predetermined magnitude.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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[0042] The invention and its various embodiments can now be better understood by turning to the following detailed description of the preferred embodiments which are presented as illustrated examples of the invention defined in the claims. It is expressly understood that the invention as defined by the claims may be broader than the illustrated embodiments described below.
DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
Lateral Flow Immunoassay
[0043] The invention is directed to lateral flow immunoassay for bacterial spore detection and quantification using lanthanide luminescence with both high sensitivity and selectivity in less than five minutes. The method combines lateral flow immunoassay and dipicolinic acid (DPA) triggered terbium (Tb) luminescence technologies. The lateral flow immunoassay provides high selectivity for specific bacterial spore species, and the DPA triggered Tb luminescence method for bacterial spore detection enables greatly improved detection limits over the prior art detection schemes.
[0044] The new technology has significantly improved detection limits, because it is based on Luminescence turn-on against a dark background, which is much more sensitive than measuring the scattered light, from gold nanoparticles against a bright background. Based on DPA-triggered Tb luminescence experiments, we anticipate single spore detection limits for 100 μl samples (i.e. 10 spores/ml).
[0045] The solution for developing a lateral flow immunoassay based detection of bacterial spores with single spore detection limits is to use DPA triggered Tb luminescence as the detection scheme. The methodology for achieving single spore detection is more expressly disclosed in U.S. patent application Ser. No. 10/306,331 (Docket No.: P070-US) filed on Nov. 27, 2002, entitled “An Improvement In A Method For Bacterial Endospore Quantification Using Lanthanide Dipicolinate Luminescence,” and assigned to the same assignee as the present invention, which application is incorporated herein by reference, and issued as U.S. Pat. No. 7,306,930 on Dec. 11, 2007 entitled “Method Bacterial Endospore Quantification Using Lanthanide Dipicolinate Luminescence”.
[0046] Consider now the DPA-triggered Tb luminescence detection of bacterial spores. Dipicolinic acid DPA, 2, 6 pyridinedicarboxylic acid) is present in highconcentrations (about 1 molar or about 15% of by weight) in the core of bacterial spores 38 as a 1:1 complex with Ca.sup.2+ as shown in
[0047] The core of bacterial spores contains 1 molar dipicolinic acid (DPA) (˜15% of the spore dry weight). It has been shown that the DPA can be released into bulk solution by microwaving the sample (germination with L-alanine, sonication with microspheres, and autoclaving have also been used to release DPA from the spore). When the released DPA binds terbium ions in bulk solution, bright green luminescence is triggered under UV excitation.
[0048] The mechanism of DPA-triggered Tb luminescence is based on the unique photophysical properties of lanthanide ions. The luminescence of lanthanide ions is characterized by long lifetimes (0.1 to 1 ms), small extinction coefficients (a.k.a. absorbtivity, about 1 M.sup.−1 cm.sup.−1) and narrow emission bands. These characteristics arise because the valence f orbitals are shielded from the environment by the outer 5s and 5p electrons, and because the transition between the emitting excited stare and ground state is highly forbidden. Thus, direct excitation of terbium ions leads to weak luminescence due to the small absorption cross section. However, coordination of aromatic chromophores, like DPA, triggers intense terbium luminescence. The juxtaposition of DPA, which has an absorbtivity of 5000 M.sup.−1 cm.sup.−1 serves as a light-harvesting center (e.g. antenna effect). Strong electronic coupling and downhill energies allow the DPA centered excitation energy to be efficiently transferred to the lanthanide ion, which subsequently luminesces bright green.
[0049] Consider now the details of lateral flow immunoassay with DPA-triggered Tb luminescence detection of bacterial spores 10. The test strip 18 is comprised of a nitrocellulose membrane 12 that has species-specific antibodies bound in the sample regions, which are regions 26 and 22 of the strip as shown in
[0050] The control is performed on a parallel test strip to which about 100 μl containing a known concentration of Bacillus subtilis is added. The standard 20 undergoes the identical procedure as the unknown sample 10. Green luminescence in region 22 and a change in color in regions 24 indicates that the assay has worked properly and the ratio of luminescence intensity from the sample 10 in region 26 and standard 20 in region 22 is proportional to the concentration of the bacterial spore of interest. The microwaving step can be completed in less than 2 minutes. Thus the complete assay can be performed within 7 to 10 minutes. The sample 10 and standard 20 may be processed simultaneously or sequentially as may be desired.
Live/Dead Assay for Bacterial Spores
[0051] The invention also includes a method and apparatus to measure the fraction of bacterial spores that remain viable or alive, hence a live/dead assay for bacterial spores. The method combines dipicolinic acid triggered terbium luminescence and dipicolinic acid release from (1) viable bacterial spore through germination, and (2) all viable and nonviable bacterial spores by autoclaving, sonication, or microwaving. The ratio of the results from steps (1) and (2) yield the fraction of bacterial spores that are alive.
[0052] The invention does not suffer from the aforementioned prior art problems of colony or microscopic counting, because it is based on a molecular approach that (1) works whether or not a bacterial spore is attached on a particulate, (2) does not require bacteria to be cultivable, and (3) can be performed on the timescale of 20 minutes.
[0053] The solution for developing a live/dead assay for bacterial spores requires a molecular approach. DPA can be released into bulk solution by inducing germination with L-alanine or by autoclaving the sample. In germination, only viable spores release DPA, while autoclaving forces all spores, viable and nonviable, to release DPA. Microwaving and sonication also releases DPA from all spores, whether dead or alive. Again, when the released DPA binds terbium ions in bulk solution, bright green luminescence is triggered under UV excitation.
[0054] The luminescence intensity can be correlated to the concentration of viable bacterial spores when germination is used to release the DPA, and to the total bacterial spore concentration when either autoclaving, sonication, or microwaving is used to release DPA. Thus, these methods of DPA release allow us to quantify both the viable and total bacterial spore count, and subsequently the fraction of spores that are viable for a given sample.
[0055] Since germination releases the DPA content of viable bacterial spores, while autoclaving, sonication, and microwaving releases the DPA content of all bacterial spores, including non-viable bacterial spores, using the DPA triggered Tb luminescence method in conjunction with the DPA release, induced by (1) germination and (2) either autoclaving, sonication, and microwaving, allows us to determine the viable and total spore count, respectively, and subsequently the fraction of viable bacterial spores as illustrated in
Lifetime-Gated Measurements of Bacterial Spores and Imaging Bacterial Spores Using an Active Pixel Sensor
[0056] Finally, the method of the invention is amenable to lifetime-gated measurements to eliminate any fluorescence background from organic chromophores. It is also possible to quantify the fraction of bacterial spores that remain viable by inducing DPA release by germination and microwaving as described below, and to obtain further increased sensitivity by preparing special Tb complexes that enhance the luminescence turn-on, and DPA binding affinity.
[0057] Consider now the problem of imaging bacterial spores. The imaging methodology is again based on a combination of dipicolinic acid triggered terbium luminescence (Tb luminescence assay) and imaging using an active pixel sensor (APS), which is well known to the art. The Tb luminescence assay enables specific detection of bacterial spores with a current detection limit of 5,000 spores/ml when TbCl.sub.3 used as the analysis reagent. This assay can be performed in 30 minutes or less depending on the DPA release mechanism that is employed. APS is ideally suited to image the resultant Tb luminescence when spores are present because of its inherent ability to perform lifetime gated imaging.
[0058] In this embodiment the spores or their contents have been labeled with a long-lifetime lumophore which fact is used to advantage during detection. Since almost every natural fluorescent material decays in a few nanoseconds, delayed luminescence is a powerful discriminator against background biological or mineralogical signals. For example, flavinoids, NADH, collagen and many other biological and cellular components fluoresce in the wavelength region of 300-500 nm, but all have lifetimes less than a few tens of nanoseconds.
[0059] Jet Propulsion Laboratory has developed a true snapshot imager, using CMOS technology in an APS that is ideally suited for imaging and measurement of delayed luminescence probes. In this implementation, the entire imager can be cycled off and on in a clock cycle, typically less than a microsecond. The basic measurement cycle is to pulse an excitation source for the luminescence with an on time of a few nanoseconds, wait 30 μs and then turn on the imager for 2 ms, turn it off and read out the image and the photon counts for each pixel. A unique feature of the CMOS or Active Pixel Sensor (APS) technology is that each pixel can contain active circuit elements and can perform signal averaging to improve the signal to noise as well as other processing. By imaging the collection tape, we can count the pixels that contain luminescence signal and get a spore count.
[0060]
Unattended Monitoring of Bacterial Spores in the Air
[0061] Consider now the technology that is required to enable one to achieve unattended monitoring of bacterial spores in the air. The novelty of the method lies again in the combination of (1) aerosol capture methods and (2) lanthanide luminescence detection of bacterial spores This combination will enable an alarm for airborne bacterial spores similar in concept to a smoke detector, which works continuously and unattended.
[0062] The invention as described below does not suffer from the above mentioned problems of the prior art, because it (1) does not require cultivable bacteria, and (2) can be performed continuously with a sampling rate of at least four readings per hour using current instrumentation, and (3) does not require active sampling by a trained technician.
[0063] Online monitoring of aerosolized bacterial spores, such as Bacillus anthracis and Clostridium botulism spores, is essential in locations such as public transportation, mail sorting, food preparation, health care facilities and even military environments. We have become especially motivated to develop a method of unattended monitoring of bacterial spores in the air after the anthrax attacks following the Sep. 11, 2002 terrorist attacks. Another motivation was the application of the method towards planetary protection, which is primarily concerned with spacecraft sterilization.
[0064] A solution for unattended monitoring of airborne bacterial spores is achieved by the combination of (1) aerosol capture methods and (2) lanthanide luminescence detection of the bacterial spores as described above. The luminescence intensity arising from DPA detection can be correlated to the concentration of bacterial spores. When this detection method is coupled to an aerosol capture device that suspends aerosolized spores into a terbium containing solution, unattended monitoring of bacterial spores in the air is enabled. In general, the method comprises the steps of capturing aerosolized bacterial spores with an aerosol sampler or impactor of which there are many commercial models are available. The captured spores are then lysed using microwave radiation, autoclaving, or other methods that release DPA from the core of the spores. The released DPA then binds terbium ions or other chromophores that give rise to luminescence turn-on upon DPA binding. The luminescence turn-on is monitored by a luminescence spectrometer or fluorimeter. Continuous sampling of the air while monitoring for luminescence turn-on gives rise to an alarm capability for aerosolized bacterial spores, which does not require human participation over extended periods, such as time periods of the order of 8 hours.
[0065] In the illustrated embodiment stock solutions of purified Bacillus subtilis spores were purchased from Raven Biological. A Lovelace nebulizer was used to generate an aerosol 40 of the bacterial spore air suspensions. The spore “smoke” detector instrument as shown in the diagram of
[0066] The biosampler 42, filled with 20 ml of 10 μM TbCl.sub.3 glycerol solution, has a 95% transfer efficiency for microbe-containing aerosols. Once bacterial spores are suspended in the biosampler collection vessel 47, microwaving completely or sufficiently releases DPA into bulk solution 46 within 8 minutes or less. The resulting free DPA then binds Tb in bulk solution, giving rise to luminescence turn-on under UV excitation. A fiber optic probe 48 immersed in the sample solution transmits the Luminescence to the spectrometer 50. Spectrometer 50 is coupled to alarm circuit 52 which then generates an appropriate alarm signal when a predetermined detection occurs, namely a wireless or wired signal with identification information is generated and transmitted to a remote monitoring station. The monitoring station may monitor a plurality of remote biosensors such as shown in
[0067] While the biosampler 42 is continually sampling the air, a cycle comprising an 8-minute microwaving step at 140° C. at 1 atmosphere, a 7 minute cooling period, and a 30 second luminescence measurement is performed repeatedly. Cooling down to room temperature is required because the binding constant for the Tb-DPA complex at 140° C. is much lower than at room temperature, thus leading to near zero fraction bound at 140° C.
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[0069] Thus, we have demonstrated quantification of aerosolized bacterial spores with a response time of about 15 minutes or less, a sensitivity of 10.sup.5 spores/ml, and a dynamic range of four orders of magnitude. The sensitivity can be improved by optimizing aerosol collection and spectrometer performance. Ultimately, the most attractive feature we have demonstrated is the unattended monitoring of aerosolized bacterial spores for the duration of a workday (i.e. ˜8 hrs).
[0070] Many alterations and modifications may be made by those having ordinary skill in the art without departing from the spirit and scope of the invention. Therefore, it must be understood that the illustrated embodiment has been set forth only for the purposes of example and that it should not be taken as limiting the invention as defined by the following claims. For example, notwithstanding the fact that the elements of a claim are set forth below in a certain combination, it must be expressly understood that the invention includes other combinations of fewer, more or different elements, which are disclosed in above even when not initially claimed in such combinations.
[0071] The words used in this specification to describe the invention and its various embodiments are to be understood not only in the sense of their commonly defined meanings, but to include by special definition in this specification structure, material or acts beyond the scope of the commonly defined meanings. Thus if an element can be understood in the context of this specification as including more than one meaning, then its use in a claim must be understood as being generic to all possible meanings supported by the specification and by the word itself.
[0072] The definitions of the words or elements of the following claims are, therefore, defined in this specification to include not only the combination of elements which are literally set forth, but all equivalent structure, material or acts for performing substantially the same function in substantially the same way to obtain substantially the same result. In this sense it is therefore contemplated that an equivalent substitution of two or more elements may be made for any one of the elements in the claims below or that a single element may be substituted for two or more elements in a claim. Although elements may be described above as acting in certain combinations and even initially claimed as such, it is to be expressly understood that one or more elements from a claimed combination can in some cases be excised from the combination and that the claimed combination may be directed to a subcombination or variation of a subcombination.
[0073] Insubstantial changes from the claimed subject matter as viewed by a person with ordinary skill in the art, now known or later devised, are expressly contemplated as being equivalently within the scope of the claims. Therefore, obvious substitutions now or later known to one with ordinary skill in the art are defined to be within the scope of the defined elements.
[0074] The claims are thus to be understood to include what is specifically illustrated and described above, what is conceptionally equivalent, what can be obviously substituted and also what essentially incorporates the essential idea of the invention.
[0075] In summary, methods and apparatus for assays of bacterial spores have been described. A sample of unknown bacterial spores is added to a test strip. The sample of unknown bacterial spores is drawn to a first sample region on the test strip by capillary action. Species-specific antibodies are bound to the sample when the unknown bacterial spores match the species-specific antibodies, otherwise the sample is left unbound. DPA is released from the bacterial spores in the bound sample. The terbium ions are combined with the DPA to form a Tb-DPA complex. The combined terbium ions and DPA are excited to generate a luminescence characteristic of the combined terbium ions and DPA to detect the bacterial spores. A live/dead assay is performed by a release of the DPA for live spores and a release of DPA for all spores. The detection concentrations are compared to determine the fraction of live spores. Lifetime-gated measurements of bacterial spores to eliminate any fluorescence background from organic chromophores comprise labeling the bacterial spore contents with a long-lifetime lumophore and detecting the luminescence after a waiting period. Unattended monitoring of bacterial spores in the air comprises the steps of collecting bacterial spores carried in the air and repeatedly performing the Tb-DPA detection steps above. The invention is also apparatus for performing the various methods disclosed above.