PRIMITIVE GUT ENDODERM CELLS AND METHOD FOR PRODUCING SAME
20170335277 · 2017-11-23
Assignee
Inventors
- Takanori TAKEBE (Yokohama-shi, JP)
- Hideki TANIGUCHI (Yokohama-shi, JP)
- Ran ran ZHANG (Yokohama-shi, JP)
Cpc classification
A61K35/38
HUMAN NECESSITIES
C12N2506/45
CHEMISTRY; METALLURGY
C12N2501/165
CHEMISTRY; METALLURGY
C12N2533/90
CHEMISTRY; METALLURGY
C12N5/0607
CHEMISTRY; METALLURGY
C12N5/10
CHEMISTRY; METALLURGY
C12N2501/16
CHEMISTRY; METALLURGY
C12N2501/115
CHEMISTRY; METALLURGY
C12N2501/155
CHEMISTRY; METALLURGY
International classification
Abstract
The present invention provides a technique that serves as a platform for inducing human organ cells at a low cost, stably and in a large quantity. A cell inducible after differentiating pluripotent stem cells and then passaging the resultant cells at least once or more times, which is negative for undifferentiated (pluripotent) cell markers NANOG, OCT4, MYC and LIN28A, negative for endoderm cell markers CXCR4, CER1, HHEX and GATA4, positive for intestinal endoderm cell markers CDX2 and HOXB9, negative for a mesenchymal cell marker brachyury (T), negative for a pancreatic cell marker PDX1, and capable of differentiating into at least a hepatocyte, a pancreatic cell and an intestinal cell. Also provided are methods of preparing and amplifying the above cells; a method of preparing organ cells using the above cells; and a method of constructing a working cell bank for preparing organ cells, comprising cryopreserving the above cells.
Claims
1. A Cell inducible after differentiating pluripotent stem cells and then passaging the resultant cells at least once or more times, which is negative for undifferentiated (pluripotent) cell markers NANOG, OCT4, MYC and LIN28A, negative for endoderm cell markers CXCR4, CER1, HHEX and GATA4, positive for intestinal endoderm cell markers CDX2 and HOXB9, negative for a mesenchymal cell marker brachyury (T), negative for a pancreatic cell marker PDX1, and capable of differentiating into at least a hepatocyte, a pancreatic cell and an intestinal cell.
2. A method of preparing the cells of claim 1, comprising culturing pluripotent stem cells without feeder cells in the presence of Rock Inhibitor at the first stage, in the presence of Activin A and Wnt3a at the second stage, in the presence of BMP4, bFGF, VEGF and Activin A at the third stage and in the presence of BMP4, bFGF, VEGF and Activin A at the fourth stage, to thereby effect differentiation and then passaging the resultant cells at least once or more times.
3. A method of amplifying the cells of claim 1, comprising culturing the cells in the presence of Rock Inhibitor at the first stage after passage or on the first day of passage and thereafter in the presence of SFD, FGF2, VEGF, EGF, A83-01 and Chir99021.
4. A method of preparing organ cells, comprising directed differentiation and induction of the cells of claim 1 into organ cells.
5. A method of constructing a working cell bank for preparing organ cells, comprising cryopreserving the cells of claim 1 at an arbitrary stage.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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[0048] B: Albumin secretion ability of PGEC-derived liver buds. Human albumin was detected from the stage at day 4 of differentiation and induction using HCM/ECM. When compared to tissues from a sphere culture of PGEC alone (i.e., tissues obtained by harvesting PGECs alone, plating at a density of 5×10.sup.5 cells/well/24-well plate in low-adhesive culture plates with a shape in which cells gather at the bottom, and culturing for several days), PGEC-derived liver buds showed a significantly high albumin secretion ability. When KO-DMEM/EGM mixed medium was used instead of HCM/EGM mixed medium, albumin secretion was not confirmed.
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BEST MODES FOR CARRYING OUT THE INVENTION
[0052] Hereinbelow, the present invention will be described in more detail.
[0053] The present invention provides cells inducible after differentiating pluripotent stem cells and then passaging the resultant cells at least once or more times, which are negative for undifferentiated (pluripotent) cell markers NANOG, OCT4, MYC and LIN28A, negative for endoderm cell markers CXCR4, CER1, HHEX and GATA4, positive for intestinal endoderm cell markers CDX2 and HOXB9, negative for a mesenchymal cell marker brachyury (T), negative for a pancreatic cell marker PDX1, and capable of differentiating into at least hepatocytes, pancreatic cells and intestinal cells (hereinafter, the cells are sometimes referred to as primitive gut endoderm cells, PGE or PGECs in the present specification).
[0054] The cells of the present invention (PGECs) are induced after differentiating pluripotent stem cells and then passaging the resultant cells at least once or more times. As used herein, the tend “pluripotent stem cell” refers to a cell that latently has a capacity to differentiate into various tissues of the body (differentiation versatility). Specifically, pluripotent stem cell refers to a cell that is capable of differentiating into any of endodemi, mesoderm and ectoderm. Specific examples of pluripotent stem cell include, but are not limited to, induced pluripotent stem (iPS) cells and embryonic stem (ES) cells. The pluripotent stem cells used in the present invention may be human derived cells. Pluripotent stem cells derived from animals such as mouse, rat, dog, pig, monkey, sheep, cattle or chicken may also be used.
[0055] For differentiation of pluripotent stem cells, pluripotent stem cells may be cultured without feeder cells in the presence of Rock Inhibitor at the first stage, in the presence of Activin A and Wnt3a at the second stage, in the presence of BMP4, bFGF, VEGF and Activin A at the third stage and in the presence of BMP4, bFGF, VEGF and Activin A at the fourth stage, to thereby effect differentiation and then passaging the resultant cells at least once or more times. For example, when the initial day of culture is designated as Day 0, pluripotent stem cells may be cultured without feeder cells in the presence of Rock Inhibitor on Day 0, in the presence of Activin A and Wnt3a on Day 1, in the presence of BMP4, bFGF, VEGF and Activin A from Day 2 to Day 3 and in the presence of BMP4, bFGF, VEGF and Activin A from Day 4 to Day 5. However, the method of differentiation is not limited to this exemplary method. With respect to medium, SDF medium, RPMI medium, combinations thereof, and the like may be used.
[0056] At least one or more passages are carried out. The number of times of passaging (passage number) is not particularly limited as long as the cells of the present invention (PGECs) can be obtained. Preferably, passage number is 1 to 30; more preferably, 1 to 20. After differentiation of pluripotent stem cells, passage may be started when confluency (the percentage of culture vessel occupied by cells) has reached about 80-90%. In such a state, a cell population is generated which, upon FACS analysis, is almost (80% or more) positive for antigens c-kit and CXCR4 as shown in
[0057] Passage(s) may be carried out in SFD medium supplemented with A83-01, CHIR, VEGF, EGF and FGF2. However, medium for passage is not limited to this medium.
[0058] It was observed that a group of HOX genes such as CDX2 and HOXB9 are induced after passage(s).
[0059] Cell culture may be carried out in culture incubators at 37° C., 5% CO.sub.2. In one embodiment of the present invention, for example, pluripotent stem cells (2−6×10.sup.5 cells) are seeded in SFD medium (1.5-2 ml, preferably 2 ml) supplemented with Rock Inhibitor (1-20 μM, preferably 10 μM) (Day 0). After one-day culture, the medium is exchanged with SFD medium (1.5-4 ml, preferably 2 ml) supplemented with Wnt3a (1-100 ng/ml, preferably 50 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml) (Day 1), followed by another one-day culture. Subsequently, SFD medium and RPMI1640 medium are mixed at a ratio of 1:1 to 1:10 (preferably 1:9). To the resultant medium, BMP4 (0.5-4 ng/ml, preferably 2 ng/ml), bFGF (5-10 ng/ml, preferably 5 ng/ml), VEGF (5-50 ng/ml, preferably 10 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml) are added. With the resultant medium, medium exchange is performed, followed by two-day culture (Day 2-Day 3). Thereafter, medium exchange is performed further with SFD medium (1.5-2 ml, preferably 2 ml) supplemented with BMP4 (0.5-5 ng/ml, preferably 2 ng/ml), bFGF (5-10 ng/ml, preferably 5 ng/ml), VEGF (8-20 ng/ml, preferably 10 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml), followed by two-day culture (Day 4-Day 5). The thus cultured cells are designated as PO cells (passage 0) and subjected to passaging. For example, P0 cells (500−4×10.sup.5 cells, preferably 1×10.sup.5 cells) are seeded in PGE maintenance medium, followed by medium exchange once in every 3-4 days. The PGE maintenance medium is SFD medium (1.5-2 ml, preferably 2 ml) supplemented with FGF2 (5-10 ng/ml, preferably 5 ng/ml), VEGF (8-20 ng/ml, preferably 10 ng/ml), EGF (10-40 ng/ml, preferably 20 ng/ml), A83-01 (0.1-1 μM, preferably 0.5 μM) and Chir99021 (1-5 μM, preferably 3 μM).
[0060] In another embodiment of the present invention, for example, pluripotent stem cells (2−6×10.sup.5 cells) are seeded in B27 (2%)-added RPMI/1640 medium (1.5-2 ml, preferably 2 ml) supplemented with Rock Inhibitor (1-20 μM, preferably 10 μM) (Day 0). After one day culture, the medium is exchanged with B27 (2%)-added RPMI/1640 medium (1.5-4 ml, preferably 2 ml) supplemented with Wnt3a (1-100 ng/ml, preferably 50 ng/ml) and Activin A (50-150 ng/ml, preferablyl00 ng/ml) (Day 1), followed by another one day culture. Subsequently, to B27 (2%)-added RPMI/1640 medium (1.5-4 ml, preferably 2 ml), BMP4 (0.5-4 ng/ml, preferably 2 ng/ml), bFGF (5-10 ng/ml, preferably 5 ng/ml), VEGF (5-50 ng/ml, preferably 10 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml) are added. With the resultant medium, medium exchange is performed, followed by two-day culture (Day 2-Day 3). Thereafter, medium exchange is performed further with SFD medium (1.5-2 ml, preferably 2 ml) supplemented with BMP4 (0.5-5 ng/ml, preferably 2 ng/ml), bFGF (5-10 ng/ml, preferably 5 ng/ml), VEGF (8-20 ng/ml, preferably 10 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml), followed by two-day culture (Day 4-Day 5 or Day 4). The thus cultured cells are designated as PO cells (passage 0) and subjected to passaging. For example, P0 cells (500−4×10.sup.5 cells, preferably 1×10.sup.5 cells) are seeded in PGE maintenance medium, followed by medium exchange once in every 3-4 days. The PGE maintenance medium is SFD medium (1.5-2 ml, preferably 2 ml) supplemented with FGF2 (5-10 ng/ml, preferably 5 ng/ml), VEGF (8-20 ng/ml, preferably 10 ng/ml), EGF (10-40 ng/ml, preferably 20 ng/ml), A83-01 (0.1-1 μM, preferably 0.5 μM) and Chir99021 (1-5 μM, preferably 3 μM).
[0061] The cells of the present invention (PGECs) are negative for undifferentiated (pluripotent) cell markers NANOG, OCT4, MYC and LIN28A, negative for endoderm cell markers CXCR4, CER1, HHEX and GATA4, positive for intestinal endoderm cell markers CDX2 and HOXB9, negative for a mesenchymal cell marker brachyury (T), and negative for a pancreatic cell marker PDX1. Besides, it is preferable that the cells of the present invention (PGECs) are positive for intestinal endoderm cell markers HOXBS, HOXB6, HOXB7, HOXB8, HOXA9 and HOXC9, negative for a mesenchymal cell marker PDGFRA, and negative for a hepatocyte marker ALB.
[0062] The cells of the present invention (PGECs) are capable of differentiating into organ cells such as hepatocytes, pancreatic cells and intestinal cells. Differentiation and induction into hepatocytes, pancreatic cells or intestinal cells may be performed by the methods disclosed in the Examples described later. When the organ cell of interest is hepatocytes, differentiation and induction into hepatocytes may be achieved by culturing the PGECs of the present invention in the presence of, for example, FBS, HGF, OSM and DEX (see Examples described later). When the organ cell of interest is pancreatic cells, differentiation and induction into pancreatic cells may be achieved by culturing the PGECs of the present invention in the presence of, for example, L-glutamine, glucose, ascorbic acid, SB431542, 2-M insulin and nicotinamide (see Examples described later). When the organ cell of interest is intestinal cells, differentiation and induction into intestinal cells may be achieved by culturing the PGECs of the present invention in the presence of, for example, B27, R-Spondin1, Noggin and EGF (see Examples described later).
[0063] The cells of the present invention (PGECs) permit cryopreservation. The timing for cryopreservation is not particularly limited. Preferably, the cells are cryopreserved after 1-20 passages, more preferably after 2-10 passages.
[0064] It is an advantage of the cells of the present invention that common cell freezing/thawing procedures may be used. However, in particular, it is important that (a) the work involved until freezing the cells after they are mixed with preservation solvent and (b) the operation for thawing the frozen cells after preservation be carried out promptly.
[0065] Since the cells of the present invention (PGECs) can be cryopreserved, it is possible to use them as a working cell bank for preparing endoderm-derived cells, tissues or organs for use in clinical/drug discovery applications. Therefore, the present invention also provides a method of constructing a working cell bank for preparing organ cells, comprising cryopreserving the PGECs at an arbitrary stage.
[0066] For preparing the cells of the present invention (PGECs), pluripotent stem cells may be cultured without feeder cells in the presence of Rock Inhibitor at 1.sup.st stage, in the presence of Activin A and Wnt3a at 2.sup.nd stage, in the presence of BMP4, bFGF, VEGF and Activin A at 3.sup.rd stage and in the presence of BMP4, bFGF, VEGF and Activin A at 4.sup.th stage, to thereby effect differentiation and then passaged at least once or more times. For example, when the initial day of culture is designated as Day 0, pluripotent stem cells may be cultured without feeder cells in the presence of Rock Inhibitor on Day 0, in the presence of Activin A and Wnt3a on Day 1, in the presence of BMP4, bFGF, VEGF and Activin A from Day 2 to Day 3 and in the presence of BMP4, bFGF, VEGF and Activin A from Day 4 to Day 5, to thereby effect differentiation and then passaged at least once or more times. However, the method of preparation of the cells of the present invention (PGECs) is not limited to this method. With respect to medium, SFD medium, RPMI medium, combinations thereof, and the like may be used.
[0067] Passaging is as described above.
[0068] Cell culture may be carried out in culture incubators at 37° C., 5% CO.sub.2.
[0069] In one embodiment of the present invention, for example, pluripotent stem cells (2−6×10.sup.5 cells) are seeded in SFD medium (1.5-2 ml, preferably 2 ml) supplemented with Rock Inhibitor (1-20 μM, preferably 10 μM) (Day 0). After one day culture, the medium is exchanged with SFD medium (1.5-4 ml, preferably 2 ml) supplemented with Wnt3a (1-100 ng/ml, preferably 50 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml) (Day 1), followed by another one day culture. Subsequently, SFD medium and RPMI1640 medium are mixed at a ratio of 1:1 to 1:10 (preferably 1:9). To the resultant medium, BMP4 (0.5-4 ng/ml, preferably 2 ng/ml), bFGF (5-10 ng/ml, preferably 5 ng/ml), VEGF (5-50 ng/ml, preferably 10 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml) are added. With the resultant medium, medium exchange is performed, followed by two-day culture (Day 2-Day 3). Thereafter, medium exchange is performed further with SFD medium (1.5-2 ml, preferably 2 ml) supplemented with BMP4 (0.5-5 ng/ml, preferably 2 ng/ml), bFGF (5-10 ng/ml, preferably 5 ng/ml), VEGF (8-20 ng/ml, preferably 10 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml), followed by two-day culture (Day 4-Day 5). The thus cultured cells are designated as PO cells (passage 0) and subjected to passaging. For example, PO cells (500−4×10.sup.5 cells, preferably 1×10.sup.5 cells) are seeded in PGE maintenance medium, followed by medium exchange once in every 3-4 days. The PGE maintenance medium is SFD medium (1.5-2 ml, preferably 2 ml) supplemented with FGF2 (5-10 ng/ml, preferably 5 ng/ml), VEGF (8-20 ng/ml, preferably 10 ng/ml), EGF (10-40 ng/ml, preferably 20 ng/ml), A83-01 (0.1-1 μM, preferably 0.5 μM) and Chir99021 (1-5 μM, preferably 3 μM).
[0070] In another embodiment of the present invention, for example, pluripotent stem cells (2−6×10.sup.5 cells) are seeded in B27 (2%)-added RPMU1640 medium (1.5-2 ml, preferably 2 ml) supplemented with Rock Inhibitor (1-20 preferably 10 μM) (Day 0). After one day culture, the medium is exchanged with B27 (2%)-added RPM/1640 medium (1.5-4 ml, preferably 2 ml) supplemented with Wnt3a (1-100 ng/ml, preferably 50 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml) (Day 1), followed by another one day culture. Subsequently, to B27 (2%)-added RPMI/1640 medium (1.5-4 ml, preferably 2 ml), BMP4 (0.5-4 ng/ml, preferably 2 ng/ml), bFGF (5-10 ng/ml, preferably 5 ng/ml), VEGF (5-50 ng/ml, preferably 10 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml) are added. With the resultant medium, medium exchange is performed, followed by two-day culture (Day 2-Day 3). Thereafter, medium exchange is performed further with SFD medium (1.5-2 ml, preferably 2 ml) supplemented with BMP4 (0.5-5 ng/ml, preferably 2 ng/ml), bFGF (5-10 ng/ml, preferably 5 ng/ml), VEGF (8-20 ng/ml, preferably 10 ng/ml) and Activin A (50-150 ng/ml, preferably 100 ng/ml), followed by two-day culture (Day 4-Day 5 or Day 4). The thus cultured cells are designated as PO cells (passage 0) and subjected to passaging. For example, PO cells (500−4×10.sup.5 cells, preferably 1×10.sup.5 cells) are seeded in PGE maintenance medium, followed by medium exchange once in every 3-4 days. The PGE maintenance medium is SFD medium (1.5-2 ml, preferably 2 ml) supplemented with FGF2 (5-10 ng/ml, preferably 5 ng/ml), VEGF (8-20 ng/ml, preferably 10 ng/ml), EGF (10-40 ng/ml, preferably 20 ng/ml), A83-01 (0.1-1 μM, preferably 0.5 μM) and Chir99021 (1-5 μM, preferably 3 μM).
[0071] Further, for amplifying the cells of the present invention (PGECs), the cells may be cultured in the presence of Rock Inhibitor at the first stage after passage or on the first day of passage and thereafter in the presence of SFD, FGF2, VEGF, EGF, A83-01 and Chir99021. For example, when the initial day of culture after passage is designated as Day 0, PGECs may be amplified by culturing in the presence of Rock Inhibitor on Day 0 and thereafter in the presence of SFD, FGF2, VEGF, EGF, A83-01 and Chir99021. However, the method of amplification of the cells of the present invention (PGECs) is not limited to this method.
[0072] Cell culture may be carried out in culture incubators at 37° C., 5% CO.sub.2.
[0073] In one embodiment of the present invention, for example, when the initial day of culture after passage or the first day of passage is designated as Day 0, PGECs (500−4×10.sup.5 cells, preferably 1×10.sup.5 cells) are seeded in PGE maintenance medium supplemented with Rock Inhibitor (1-100 μM, preferably 10 μM) (Day 0) and on the following day, medium exchange with PGE maintenance medium is performed. Medium exchange is performed once in every 3-4 days. The PGE maintenance medium is SFD medium (1.5-2 ml, preferably 2 ml) supplemented with FGF2 (5-10 ng/ml, preferably 5 ng/ml), VEGF (8-20 ng/ml, preferably 10 ng/ml), EGF (10-40 ng/ml, preferably 20 ng/ml), A83-01 (0.1-1 μM, preferably 0.5 μM) and Chir99021 (1-5 μM, preferably 3 μM).
[0074] For preparation and/or amplification of the cells of the present invention (PGECs), the cells may be cultured on a support such as gel. As a preferable example of this support, 1:30 diluted Matrigel™ may be given, but other supports may also be used; e.g., laminin and derivatives thereof, vitronectin, agarose gel, acrylamide gel, hydrogel, collagen gel or urethane gel.
[0075] The present invention also provides a method of preparing organ cells (such as hepatocytes, pancreatic cells and intestinal cells) using the cells of the present invention (PGECs). Differentiation and induction into hepatocytes, pancreatic cells or intestinal cells may be performed by the methods disclosed in Examples described later. When the organ cell of interest is hepatocytes, differentiation and induction into hepatocytes may be achieved by culturing the PGECs of the present invention in the presence of, for example, FBS, HGF, OSM and DEX (see Examples described later). When the organ cell of interest is pancreatic cells, differentiation and induction into pancreatic cells may be achieved by culturing the PGECs of the present invention in the presence of, for example, L-glutamine, glucose, ascorbic acid, SB431542, 2-M insulin and nicotinamide (see Examples described later). When the organ cell of interest is intestinal cells, differentiation and induction into intestinal cells may be achieved by culturing the PGECs of the present invention in the presence of, for example, B27, R-Spondin1, Noggin and EGF (see Examples described later). The cells of the present invention (PGECs) are also capable of differentiating into organ cells other than hepatocytes, pancreatic cells and intestinal cells, e.g., pulmonary cells, thyroid cells, gastrointestinal secretory gland cells, peritoneal cells, pleural cells, pharyngeal cells, cells of eustachian tube/trachea/bronchus, and urinary tract cells. For differentiation and induction of organ cells from the cells of the present invention, the cells of the present invention may be cultured on a support such as gel. As a support, 1:30 diluted Matrigel™ is preferably used when planar differentiation and induction are attempted. When three-dimensional differentiation and induction by organ bud preparation is attempted, use of gel is preferable. Examples of such gel include, but are not limited to non-diluted to 1:4 diluted Matrigel™ agarose gel, acrylamide gel, hydrogel, collagen gel and urethane gel. Organ cells differentiated and induced from the cells of the present invention are highly functional. Furthermore, such organ cells are extremely high in homogeneity, compared to those organ cells differentiated and induced from conventional pluripotent stem cells (see Examples described later).
[0076] It is possible to prepare tissues or organs using organ cells prepared from the cells of the present invention (PGECs). For example, organ cells prepared from PGECs may be co-cultured with vascular endothelial cells and mesenchymal cells to produce organ buds, which are then transplanted into living bodies to thereby prepare tissues or organs (Takebe, et al., Nature, 499: 481-484, 2013 (Non-Patent Document No. 1); WO2013/047639 A1: Method for producing tissue and organ (Patent Document No. 1)).
EXAMPLES
[0077] Hereinbelow, the present invention will be described in details with reference to the following Examples.
Example 1
Method for Amplifying PGECs Induced from iPS cells
[Experimental Methods]
[0078] iPS cells (clones established independently from umbilical cord and TkDA3 clones kindly provided by Tokyo University) cultured on Matrigel™ coating were dissociated with Accutase and harvested. The cells were plated on Matrigel™-coated 6-well plates at a density of 2−6×10.sup.5 cells/well using Rock Inhibitor (10 uM)-added SFD medium, followed by one day culture. Then, medium exchange was carried out with SFD medium supplemented with Wnt3a (50ng/m1) and Activin A (100 ng/ml), followed by another one day culture. Subsequently, SFD medium and RPMI1640 medium were mixed at a ratio of 1:9, followed by addition of BMP4 (0.5 ng/ml), bFGF (5 g/ml), VEGF (10 ng/ml) and Activin A (100 ng/ml) thereto. Medium exchange was carried out with the resultant medium, followed by two-day culture. Thereafter, medium exchange was further carried out with SFD medium supplemented with BMP4 (0.5 ng/ml), bFGF (5 g/ml), VEGF (10 ng/ml) and Activin A (100 ng/ml), followed by two-day culture. The resultant cells were designated as PGE PO and passaged in PGE maintenance medium.
[0079] PGE PO cells were dissociated with Accutase and harvested. A ⅔ volume of the harvested cells were plated on Matrigel™-coated 6-well plates using PGE maintenance medium supplemented with Rock Inhibitor (10 μM). On the next day, the cells were harvested again, and the total volume of the cells were plated on 60 mm dishes using PGE maintenance medium supplemented with Rock Inhibitor (10 μM). On the next day, the cells were observed and when they were less than 80% confluent, medium exchange was carried out with PGE maintenance medium; when the cells were 80% confluent or more, passaging was carried out. Preferably, passaging is carried out at a ratio of 1/3-1/2 up to P5. When proliferation is rapid, a lower ratio may be employed. For passaging, cells were plated on Matrigel™-coated dishes using PGE maintenance medium supplemented with Rock Inhibitor (10 nM); on the next day, medium exchange was carried out with PGE medium. Medium exchange was carried out once in every 3-4 days. When the cells were plated on 100 mm dishes at a density of 3×10.sup.5 cells/well, the cells reached confluence in 3 to 4 days. It should be noted that the timing of passaging is optimized by observing the state of the cells that are about to be passaged.
For information, reagents used in the above-described differentiation and induction into PGE and into hepatocytes are summarized in the following Tables 1 to 3.
TABLE-US-00001 TABLE 1 List of Reagents Used in Differentiation and Induction into PGE and into Hepatocytes Common Name/ Abbreviation Product Name Manufacturer Catalogue No. Matrigel Matrigel ™ growth factor reduced Life Technologies CC-354230 RPMI RPMI-1640 (Phenol Red) Wako Pure Chemical WK18902025 mTeSR mTeSR1 Veritas ST-05850 IMDM IMDM Life Technologies 12440-053 F12 F-12K Nutrient Mixture (Ham's Life Technologies 21127-022 F-12K) Kaighn's Modified KO-DMEM Knock-Out D-MEM Life Technologies 10829-018 HCM Hepatocyte Culture Media BulletKit Lonza LZ-CC-3198 (HCM BulletKit) Acctase Accurase ICT FN-AT104-500 PBS Phosphate buffer powder Wako Pure Chemical WK16714491 B27 B27 Additive (x50) Life Technologies 17504-044 RockInhibitor Y-27632 wako WK25100514 ActivinA Recombinant Human Activin A R&D (Cosmo Bio) 338-AC-01M Wnt3a Wnt-3a, Human, Recombinant R&D (Cosmo Bio) RSD-5036-WN-500- 500 BMP4 BMP-4, human recombinant Funakoshi FN-314-BP bFGF bFGF, recombinant, human WAKO 060-04543 VEGF Vascular Endothelial Cell Growth Life technologies PHC9391 Factor MTG StemSyre 50 mmol/l Monothioglycerol WAKO WK19515791 N2 N2 Additive (x50) Life Technologies 17502-048 ASP Ascorbic Acid SIGMA A2343-500G A83-01 A-83-01 (TOC2939/10) wako WK51775771 CHIR CHIR99021 CAY FN-13122 EGF Epidermal Growth Factor SIGMA E9644-.5MG DM3189 LDN193189 hydrochloride Wako Pure Chemical 124-06011 IWP2 IWP2 R&D FN-3533/10 PD0325901 PD0325901 TOCRIS 4192/10 RA Retinoic Acid wako 182-01111 KSR KnockOut Serum Replacement Life Technologies 10828-028 FBS CELLect GOLD MP Bio 2916754 NEAA MEM NEAA (100x) Life Technologies 11140-050 L-Glutamine L-Glutemine 200 mM (100x) Life Technologies 25050-081 2-ME 2-Mercaptoethanol Life Technologies 21985-023 DMSO Dimethyl Sulfoxide Nacalai KK-13445-74 HGF Recombinant human HGF Kringle Pharma DEX Dexamethasone-Water Soluble SIGMA QJ-D2915-100MG OSM Oncostatin M (OSM), human RSD FN-295-OSM-050 recombinant
2. Preparation of Media Necessary for Differentiation and Induction into PGE and Maintenance Thereof
[0080] Basal medium necessary for differentiation and induction into PGE and for PGE maintenance (hereinafter, called “SFD medium”) and PGE maintenance medium are prepared. Tables 2 and 3 below show the compositions of SFD medium and PGE maintenance medium, respectively.
TABLE-US-00002 TABLE 2 SFD Medium Reagent Volume IMDM 500 mL F12 160 mL MTG 6.6 mL N2 3.3 mL B27 3.3 mL ASP 660 μL
TABLE-US-00003 TABLE 3 PGE Maintenance Medium PGE maintenance medium is prepared by adding the following factors to SFD medium Reagent Final Concentration A83-01 0.5 μM CHIR 3 μM VEGF 10 ng/mL EGF 20 ng/mL FGF2 5 ng/mL
3. Matrigel™ Coating
[0081] Matrigel™ growth factor reduced was diluted to 1/30 with RPMI. The thus diluted solution was added to culture dishes in the necessary amount as indicated in Table 4 below, and spread over the whole surface. The dishes were left to stand at room temperature for about 2 hours. The diluted solution was recovered into a tube, and RPMI was added to the dishes in the same amount as the diluted solution. (Hereinafter, this coating operation is called “Matrigel™ coating”.) The diluted solution could be used up to three times. Matrigel™ coating was performed before cell plating.
TABLE-US-00004 TABLE 4 Necessary Amount of Diluted Solution Culture Dish Amount of Diluted Solution 6wellplate 2 mL 60 mm dish 2 mL 100 mm dish 5 mL
4. Cryopreservation and Thawing of PGEC Cells
Cryopreservation
[0082] When PGECs reached 90% confluence (about 3−4×10.sup.6 cells per 100 mm dish), the cells were washed with 3 ml of sterile Ca.sup.+/Mg.sup.+-free PBS per100 mm dish. Then, 1.5 ml of Accutase was added to the cells, followed by treatment in a 37° C., 5% CO.sub.2 incubator for 2-5 min. Immediately thereafter, the cells were neutralized with 9 ml of DMEM-F12 and collected into 50 ml conical tubes. After cell counting, centrifugation was carried out (80-90 g, 5 min). The supernatant was discarded. Then, the cells were suspended gently in cell banker-1 which had been prepared to give a volume of 1 ml per 5×10.sup.5 cells. The resultant cell suspension was transferred in 1-ml aliquots into cryopreservation tubes. The tubes were placed in an isopropanol-filled container for freezing at 1° C. (make sure that the lid was shut tightly); the container was then left to stand still in a freezer at −80° C. for one day. On the next day, the container was transferred into a liquid nitrogen tank and stored therein. According to this method, a long term preservation is possible, probably for two years or more.
Thawing
[0083] Frozen tubes containing PGECs were taken out of the liquid nitrogen tank, followed by rapid thawing in a water bath preset at 37° C. Immediately before complete thawing of the frozen cells (within less than 1 min), the tubes were taken out of the water bath and their periphery was immediately wiped with 70% ethanol in a safety cabinet; thereafter, the cells were transferred into a conical tube for centrifugation together with 9 ml of pre-warmed DMEM-F12. The cells were washed and centrifuged at 80-90 g for 5 min to give a pellet that was suspended in 10 μM Rock Inhibitor-added PGE maintenance medium which had been prepared to give a volume of 1 ml per 2×10.sup.4 cells. The cell suspension was plated on Matrigel™ (growth factor reduced) (1:30 dilution)-coated 100 mm dish to give a total volume of 10 ml (=2 x10.sup.5 cells/100 mm dish). The cells were cultured in 37° C., 5% CO.sub.2 incubator. From the following day, the cells were cultured in PGE maintenance medium (Rock Inhibitor free) with medium exchange being conducted very two days to effect amplification.
[Experimental Results]
[0084] (1) An outline of this Example is shown in
[0085] (2) Morphological observation of cells in early differentiation and induction process from human iPS cells to PGECs without passage (
[0086] (3) A review of the utility of Rock Inhibitor immediately after passaging of PGECs (
[0087] (4) A review of humoral factors useful for PGEC amplification after passaging (
[0088] *P1: passage 1. M1-M8: difference in medium composition (#1-#8) is shown. Medium compositions are indicated beneath individual photographs.
[0089] (5) Morphological observation of PGEC after repeated passaging (
[0090] P1: passage 1. M1-M8: difference in medium composition (#1-#8) is shown. Medium compositions are indicated beneath individual photographs.
[0091] Further, the cells of the present invention permit cryopreservation at an arbitrary timing by the procedures described above in Methods; it has been revealed that cells stocked at P10 for three months can be further amplified for about 20 passages after thawing (
[0092] (6) Cell growth curve (
[0093] (7) Expression analysis of PGEC marker genes before passage (PO) and after passages (P5, P10, P15 and P20). Cells after passages (P5, P10, P15 and P20) were CDX2.sup.+/CER1.sup.−/CXCR.sup.− (
[0094] (8) Analysis of cell properties before passage (P0) and after passages (P1, P10, P15 and P20). The results of FACS (flow cytometry) analysis revealed that cells before passage (P0, Day 5) were mostly positive for both C-KIT and CXCR4 (endoderm progenitor or definitive endoderm markers) whereas cells after passages (P5 and P15) were negative for those markers (
Example 2
Detailed Analysis of Differentiation Stages by Microarray Analysis
[Experimental Methods]
[0095] Total RNA was prepared from human iPSC-PGEC-derived cells [PGEC (P0), PGEC (P1 to P16) and hepatocytes induced from PGEC (PGEC-MH) (the cell obtained in Example 3 described later by directed differentiation)] using RNeasy Mini Kit (Qiagen, Valencia, Calif.). As control group, RNA was obtained from human iPSC-derived cells (hiPSC, iPSC-DE (Definitive Endoderm), iPSC-HE (Hepatic Endoderm) iPSC-IH (Immature Hepatocyte), iPSC-MH (Mature Hepatocyte), iPSC-LB (Liver Bud) (the definition of each cell is described in the following two papers: Si-Tayeb, K. et al. Highly efficient generation of human hepatocyte-like cells from induced pluripotent stem cells. Hepatology 51, 297-305 (2010), Takebe, T. et al. Vascularized and functional human liver from an iPSC-derived organ bud transplant. Nature 499, 481-484 (2013), Takebe, T. et al. Generation of a vascularized and functional human liver from an iPSC-derived organ bud transplant. Nature protocols 9, 396-409 (2014)) and human adult liver (Lot No.: B308121, Biochain Institute, Hayward, Calif., USA), and subjected to analysis. cRNA was amplified, labeled with Low Input Quick Amp Labeling Kit (Agilent Technologies, Palo Alto, Calif.), and hybridized to 44K 60-mer oligo-microarray (Human Gene Expression 4x44K v2 Microarray Kit; Agilent Technologies) according to the manufacturer's instructions. The hybridized microarray slide was scanned with Agilent High-Resolution Microarray Scanner. Relative hybridization intensities and background hybridization values were calculated with Feature Extraction Software version 10.7.3.1 (Agilent Technologies). According to the procedures recommended by Agilent Technologies and using flag criteria in GeneSpring 11.5.1 Software, raw signal intensities and flags of individual probes were calculated from hybridization intensities and spot information. Further, raw signal intensities of samples were processed for log2 conversion and normalized with quantile algorithm. The present inventors selected probes for every sample except for compromised flag and obtained 34,183 probes as detected genes. From the resultant expression data, differentiation stages of samples were classified by principal component analysis and hierarchical clustering using 75% shiftile & median corrected data.
[Experimental Results]
[0096] The results of principal component analysis (
Example 3
Differentiation from PGECs into Hepatocytes
[Experimental Methods]
[0097] PGECs (P6) were seeded in Matrigel™-coated dishes using—PGE maintenance medium supplemented with Rock Inhibitor (10 μM) so that cells would reach 60-100% confluence on the next day. After confirming 60-100% cell confluence on the next day, the medium was exchanged with Activin (100 ng/ml)-added PGE maintenance medium, followed by two-day culture (PGEC-2d). (When cells have not reached 60% confluence, medium exchange is carried out with PGE maintenance medium, in which cells are cultured until they reach 60% or more confluence.) Subsequently, the medium was exchanged with SFD medium supplemented with DM31898 (250 nM), IWP2 (4 μM), PD0325901 (500 nM) and RA (2 μM), followed by one day culture. Further, the medium was exchanged with SFD medium supplemented with A-83-01 (1 μM), BMP4 (10 ng/ml), IWP2 (4 μM) and RA (2 μM), followed by three-day culture (PGEC-HE). Then, the medium was exchanged with knockout D-MEM medium supplemented with 20% KSR, 1% DMSO, 1% NEAA, 2-ME (0.1 mM) and L-Glutamine (1 mM), followed by three-day culture. Subsequently, HCM was prepared, with EGF removed. To the resultant medium, 5% FBS, HGF (20 ng/ml), OSM (20 ng/ml) and DEX (100 nM) were added. Cells were then cultured for 8 days until they were terminally differentiated and induced into hepatocytes (PGEC-MH).
[Experimental Results]
[0098] (1) Morphological changes (
[0099] (2) Usually, it is difficult to homogeneously differentiate and induce hepatocytes from iPSC. However, cells differentiated from PGEC were such that they could be differentiated and induced into hepatocytes having homogeneous morphological features (
[0100] (3) A review of the capacity of passaged PGECs to be differentiated and induced into hepatocytes (
Example 4
Differentiation from PGECs into Pancreatic Cells
[0101] [Experimental Methods] Method of Stepwise Induction of Pancreatic Cells using PGECs (
[0102] Amplified PGECs were seeded in Matrigel.sup.TM-coated dishes using Rock Inhibitor (10 nM)-added PGEC maintenance medium so that cell density would be about 60-100% on the next day. After confirming 60-100% cell confluence on the next day, the medium was exchanged with Activin (100 ng/ml)-added PGEC maintenance medium, followed by two-day culture. (When cells have not reached 60% confluence, medium exchange is carried out with PGE maintenance medium, in which cells are cultured until they reach 60% or more confluence.) Subsequently, the medium was exchanged with DMEM (high glucose) medium supplemented with L-glutamine (2 mM), B27 (1%), ascorbic acid (50 μg/m1), Noggin (25 ng/ml), A83-01 (1 μM), RA (2 μM) and cyclopamine (0.25 μM), followed by three-day culture. Further, medium exchange was carried out with DMEM (high glucose) medium supplemented with L-glutamine (2 mM), B27 (1%), ascorbic acid (50 μg/ml), Noggin (25 ng/ml), SB431542 (6 μM), insulin (800 μM) and nicotinamide (10 mM), followed by one day culture. Subsequently, the cells were cultured in DMEM (high glucose) medium supplemented with L-glutamine (2 mM), glucose (20 mM), ascorbic acid (50 μg/ml), SB431542 (6 μM), 2-M insulin (800 μpM) and nicotinamide (10 mM) for 12 days until they were terminally differentiated and induced into pancreatic cells.
[Experimental Results]
[0103] (1) Morphological analysis of pancreatic cells induced stepwise from PGECs (
[0104] (2) The results of immunostaining showed that PGEC-derived cells had been induced into cells that were positive for pancreatic progenitor marker PDX1, endocrine cell markers INSULIN, GLUCAGON and SOMATOSTATIN, and exocrine cell marker AMYLASE (
[0105] (3) The results of gene expression analysis showed enhanced expression of INSULIN and PDX1, thus confirming differentiation and induction into β cells (
Example 5
Differentiation from PGECs into Intestinal Tissues
[0106] [Experimental Methods] Method of Stepwise Induction into Intestinal Tissues Using PGECs (
[0107] Using Rock Inhibitor (10 nM)-added PGEC maintenance medium, amplified PGECs were seeded in dishes pre-coated with Matrigel.sup.TM containing B27 1%, R-Spondinl (500 ng/ml), Noggin (100 ng/ml) and EGF (50 ng/ml) as indicated in
[Experimental Results]
[0108] (1) Intestinal Tissue Induction Protocol from PGECs (
[0109] (2)The results of microscopic observation revealed that PGECs cultured from a single cell were induced into intestinal tissues presenting a plurality of three-dimensional loop-like structures covered with laminated epithelium (
[0110] Various Measurement Methods used in Examples 1 to 4
[0111] Morphological observation method:
[0114] Cell growth curves were constructed by repeating the following operations. Briefly, cells were seeded so as to give a density of 10.sup.5 cells/well (6-well plate) (DO) immediately after passaging/seeding. On the third day after seeding, cells were dissociated and counted. [0115] Cell doubling time:
[0116] A fitted curve was obtained from a growth curve by linear approximation; cell numbers at any two timings were determined from the slope of the fitted curve and substituted into the following calculation formula:
(t.sub.2-t.sub.1)/3.32×(log n.sub.2-log n.sub.1) where t is time and n is cell number. [0117] FACS analysis:
[0118] FACS analysis was performed according to the method described in Takebe, T. et al. Vascularized and functional human liver from an iPSC-derived organ bud transplant. Nature 499, 481-484 (2013). Briefly, dissociated cells (definitive endoderm/PGEC) were incubated with fluorescence-conjugated monoclonal antibodies (mAbs) at 4° C. for 30 min in dark, washed with 2% FBS-containing PBS, and analyzed with MoFlo (Dako Cytomation). The antibodies used were allophycocyanin (APC)-conjugated hCD117 (hC-KITAPC) and phycoerythrin (PE)-conjugated hCD184 (hCXCR4PE). [0119] Immunostaining of markers:
[0120] Cultured cells were fixed with methanol for 30 min on ice, followed by blocking with 10% normal goat serum (NGS) for 60 min. After addition of primary antibody (1:200), cells were incubated at 4° C. overnight. After cells were washed with PBS, appropriate secondary antibodies (e.g., Alexa-488, -555, or -647-conjugated secondary antibodies (1:500; Invitrogen)) were prepared and added to the cells, followed by reaction at room temperature for 60 min. Stained cells were subjected to nuclear staining (DAPI) and embedded in FA mounting fluid. Photographs were taken with Zeiss AxioImager and microscope. [0121] PAS staining:
[0122] Giemsa and Periodic Acid Schiff (Wako) staining was performed according to the method in the attached instructions. [0123] ICG uptake:
[0124] Cardiogreen reagent (Sigma Cat# 12633) which had been stocked at a concentration of 25 mg/ml with DMSO was diluted with a cell culture medium (DMEM) to give a concentration of 1 mg/ml (working concentration). PGEC-MH in culture were incubated in the previously prepared DMEM medium (1 mg/ml cardiogreen (500 μ1/24 well)) at 37° C. for 3-6 hrs. Subsequently, the medium was exchanged with conventional cell culture medium, followed by confirmation of ICG uptake by microscopic observation. [0125] Measurement of ALB secretion ability:
[0126] Measurement of ALB secretion was performed according to the method described in Takebe, T. et al. Vascularized and functional human liver from an iPSC-derived organ bud transplant. Nature 499, 481-484 (2013). Briefly, after medium exchange, the medium of Day 1 was collected. ALB was measured with Human Albumin ELISA Quantitation Kit (Bethyl Laboratories) according to the methods described in the manufacturer's instructions.
Example 6
Specific Markers after Passage 1
[0127] Based on the results of comprehensive expression analyses of all genes obtained by the method described in Example 2, marker genes in iPSC, DE and PGEC (P0) that showed largest expression increase or decrease specifically in PGECs (P1 and thereafter) were extracted (Table 5 and
TABLE-US-00005 Probe ID GENE SYMBOL GENE NAME iPSC2 iPSC3 iPSC4 DE1a DE1b DE2 PGEC1_P0 PGEC2_P0 A_23_P116898|2 A2M alpha-2- 0.035484 −0.61909 −0.1075 −0.10649 −0.2906 −0.3307 −0.07321 −0.36372 macroglobulin A_23_P100730|8631 SKAP1 src kinase associated −0.33923 0.021544 −0.15649 −0.00168 −0.38794 −0.29911 −0.35936 −0.0166 phosphoprotein 1 A_23_P42386|1081 CGA glycoprotein 0.020583 −1.42989 −0.46081 −0.3081 −0.16563 −0.27346 0 −1.06523 hormones alpha polypeptide A_33_P3555368|440129 FLJ26086 hypothetical −0.28646 −1.58682 0.530572 −0.63231 −0.10928 −0.45405 −0.44088 0 LOC440129 A_23_P139687|121506 ERP27 endoplasmic 0 −0.93978 −0.74333 −0.31258 −0.13138 −0.33445 −0.05141 0.350316 reticulum protein 27 A_23_P8801, CYP3A5 cytochrome P450, A_33_P3249746|1577 family 3, subfamily A, −0.42486 −0.89161 −0.30446 0.078463 −0.33589 −0.56999 −0.46358 −0.55576 polypeptide 5 A_23_P370588|3218 HOXB8 homeobox B8 0.029264 −1.38576 −1.05356 −0.31304 −0.12796 −0.35383 0 −1.03568 A_23_P358917, CYP3A7 cytochrome P450, −0.00225 −0.29894 0.018116 −0.13022 −0.34804 −0.80899 0 −0.27573 A_33_P3318117|1551 family 3, subfamily A, polypeptide 7 A_23_P7342|7365 UGT2B10 UDP glucuronosyl- −0.17209 −0.37139 −0.74064 0 0.189805 −0.48488 −0.24138 −0.54402 transferase 2 family, polypeptide B10 A_32_P231617, TM4SF1 transmembrane −0.30731 −1.13435 0.111314 −0.73527 −1.61288 −2.07614 −0.57755 0 A_33_P3390057|4071 4 L six family member 1 A_23_P363316|3215 HOXB5 homeobox B5 0.038846 −1.44721 −1.0945 −0.34836 −0.24599 −0.33265 0 −0.10457 A_23_P127107|119467 CLRN3 clarin 3 0 −1.2037 −0.98743 −0.3849 −0.12831 −0.3736 0.117985 −0.94581 A_23_P30693|5340 PLG plasminogen 0 −1.32798 −0.9972 −0.35026 −0.08841 −0.35568 0.082272 −0.97135 A_23_P118203|124220 ZG16B zymogen −1.18651 −0.99276 −1.00801 −0.33502 −0.91727 −1.47394 −0.62838 0 granule protein 16 homolog B (rat) A_23_P78248|25984 KRT23 keratin 23 (histone 0.036822 −1.38279 −1.03368 −0.28154 −0.14312 −0.07947 0 −1.01539 deacetylase inducible) A_23_P148088|2266 FGG fibrinogen −0.91567 −1.04895 −0.76722 −0.15607 −0.22347 −2.00165 0 0.82204 gamma chain A_23_P216610|64420 SUSD1 sushi domain −0.32363 −0.43596 −0.56527 0.161051 0 −0.08429 −0.19519 −0.09489 containing 1 A_23_P27013|3219 HOXB9 homeobox B9 −1.20721 −2.61014 −2.26942 0 −1.40718 0.020502 −1.17414 −0.56194 A_23_P130113|433 ASGR2 asialoglycoprotein −0.86934 −1.37926 0 −0.59206 −1.17995 −1.21705 −0.53423 0.515928 receptor 2 A_23_P214300|2939 GSTA2 glutathione −0.84545 −1.94804 −1.05572 −0.32986 −0.68594 −0.74457 0 0.185607 S-transferase alpha 2 A_33_P3262495, ZNF503 zinc finger −0.97481 −0.49595 0 −0.06278 −0.77548 −1.03903 0.723968 −1.19929 A_33_P3268695|84858 protein 503 A_23_P3221|58472 SQRDL sulfide quinone −1.53583 −0.87025 −0.58567 −0.99793 −0.94762 0 −0.83615 0.106649 reductase-like (yeast) A_33_P3256810|7104 TM4SF4 transmembrane 4 0 −1.58275 −1.2329 0.022814 −0.32676 −0.36709 −0.12024 −1.19298 L six family member 4 A_33_P3249224|570 BAAT bile acid CoA −0.33027 −0.0257 −0.28135 −0.64944 −0.5188 −0.59369 −0.38859 0.094682 amino acid N- acyltransferase (glycine N- choloyltransferase) A_23_P118065|3294 HSD17B2 hydroxysteroid −0.84611 −1.05892 −1.377 0.108172 −0.30394 −1.1097 −0.70712 −0.03708 (17-beta) dehydrogenase 2 A_33_P3418000, RELL1 RELT-like 1 0.024254 0 −0.1736 −0.30211 −0.23538 −0.65537 −0.15747 −0.29353 A_32_P116206|768211 A_33_P3304501|1045 CDX2 caudal type −0.3334 0 0.312033 −1.15235 −2.5068 −1.99527 −0.18675 −1.73892 homeobox 2 A_33_P3291154, ZBTB20 zinc finger and −0.65219 −0.84965 −0.03497 −0.46441 −1.02571 −1.01218 0 0.815232 A_23_P40866|26137 BTB domain containing 20 A_33_P3375541|915 CD3D CD3d molecule, 0 0.298861 −0.17901 −0.6879 −0.82601 −1.61039 −0.0255 −0.71067 delta (CD3- TCR complex) A_24_P334640|85315 PAQR8 progestin and −0.01128 −0.58932 0.23462 −0.32581 −0.64189 −0.40645 −0.79043 −0.34201 adipoQ receptor family member VIII A_23_P69310|9034 CCRL2 chemokine −0.12023 −1.37791 −1.06193 −0.46476 −0.18956 0 0.049263 −0.30672 (C-C motif) receptor-like 2 A_23_P28869|5786 PTPRA protein tyrosine −0.24437 −0.22254 −0.12723 −0.08435 0 0.120167 −0.38086 −0.16053 phosphatase, receptor type, A A_33_P3392142, AKR1D1 aldo-keto reductase 0 −1.42915 −1.08785 −0.32694 −0.16398 −0.34522 −0.05121 0.76792 A_23_P382000|6718 family 1, member D1 (delta 4-3-ketosteroid- 5-beta-reductase) A_23_P64721|8843 HCAR3 hydroxycarboxylic 0 −1.31936 −0.10459 −0.33615 −0.12922 −0.00778 0.110513 −0.94598 acid receptor 3 A_23_P17065|6364 CCL20 chemokine −0.55429 −1.25318 −1.213 0.195006 0 −1.64729 −0.80351 −0.20712 (C-C motif) ligand 20 A_23_P259071, AREG amphiregulin −1.06741 0 −1.03385 −1.75712 0.304121 −1.95908 −1.63663 −2.27442 A_33_P3419190|374 A_24_P896205|645722 LOC645722 hypothetical −0.66543 −1.15472 −0.81469 0.398036 0 −1.08232 −0.35942 −0.77336 protein LOC645722 A_24_P124558|3224 HOXC8 homeobox C8 −0.53925 −1.99415 −1.63401 0.579059 −0.71201 −0.8857 0 −1.45446 A_23_P58266|6286 S100P S100 calcium 0.215119 0 −0.27319 −0.91825 −1.45162 −1.61303 −0.97264 −1.33731 binding protein P A_23_P31755|1392 CRH corticotropin −0.22625 0.033955 −0.63724 −1.39434 −1.13463 0 −0.94835 −2.00196 releasing hormone A_23_P215790, EGFR epidermal growth −0.81339 −0.60543 0 −0.28022 −0.63179 0.011038 −0.19497 −0.05886 A_33_P3351944, factor receptor A_33_P3351955|1956 A_23_P127584|4837 NNMT nicotinamide −0.51281 −2.08461 −0.70741 −2.42518 0 −1.94237 −0.12695 0.445169 N-methyl- transferase A_33_P3418421, SLC3A1 solute carrier −1.3496 −0.99492 −0.77279 −0.73149 −0.2713 −0.88098 −0.67748 0 A_24_P217234, family A_33_P3418417, 3 (cystine, A_33_P3418426|6519 dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport) member 1 A_23_P136671|7364 UGT2B7 UDP −0.95277 −0.7047 −2.06734 0 0.67708 −1.41199 −0.97469 −1.12322 glucuronosyl- transferase 2 family, polypeptide B7 A_23_P212968|10720 UGT2B11 UDP −0.82092 −0.97144 −1.62693 −0.39106 0.087372 −0.46845 −0.62732 −1.63843 glucuronosyl- transferase 2 family polypeptide B11 A_24_P12435|135112 NCOA7 nuclear receptor 0 −0.18129 0.002614 −0.50483 −0.71161 −0.74713 −0.11886 −0.02634 coactivator 7 A_23_P115261|183 AGT angiotensinogen −2.27104 −2.12171 0 −2.09432 −2.14932 −2.73508 −1.34962 0.032398 (serpin peptidase inhibitor, clade A, member 8) A_23_P44274, FGA fibrinogen −1.52852 −2.00069 −2.62255 0.069209 −1.14009 −1.67135 −1.19804 0 A_24_P282251|2243 alpha chain A_23_P171074|9452 ITM2A integral membrane 0.229918 −0.01278 0.318004 0.665385 0.588651 0.586195 0 0.106415 protein 2A A_23_P132889|1400 CRMP1 collapsin response 0.302726 0.424546 0.331372 0.381194 0.522077 −0.17068 0.291908 0 mediator protein 1 A_23_P366376|6997 TDGF1 teratocarcinoma- 1.055902 0.975906 0.443375 0.7792 0.939159 1.144099 0.340541 0 derived growth factor 1 A_33_P3360530 0.605786 0.65743 0 0.635332 0.610539 0.576718 0.647823 0.017088 A_33_P3408034 0.646906 0.614313 0 0.908723 0.667665 0.458841 0.688125 0.056206 A_23_P435407|2239 GPC4 glypican 4 −0.12283 0 0.005823 0.45027 0.861538 1.219915 0.363876 1.061733 A_23_P119593|79852 EPHX3 epoxide 0.64492 0.118802 0.155959 0.348819 0.17514 0.35963 0.385176 −0.10665 hydrolase 3 A_23_P72737, IFITM1 interferon induced 0.105631 0.095569 −0.78524 1.255876 1.193417 0 1.413558 0.759937 A_33_P3423941|8519 transmembrane protein 1 (9-27) A_23_P58953, NQO2 NAD(P)H , 0.013543 0.124331 0.617963 −0.18804 0 0.112679 0.122828 0.321461 A_33_P3773261|4835 dehydrogenase quinone 2 A_24_P357266|2925 GRPR gastrin-releasing −0.80677 0 0.773735 0.025359 0.441417 1.320668 0.035607 1.651856 peptide receptor A_33_P3353345, SULT4A1 sulfotransferase 0.551437 1.018361 0.287167 0.758323 0.616955 0 0.161203 0.272604 A_33_P3280367|25830 family 4A, member 1 A-24_P15502 0.31672 0.040735 −0.47952 1.096931 1.141647 0.152782 1.017473 0.306318 A_23_P76538|54997 TESC tescalcin 0.54078 0.604147 1.073677 0 −0.17079 2.423596 1.428295 0.636807 A_24_P287043|10581 IFITM2 interferon induced 0.408745 0.068269 −0.34835 1.162954 1.138148 0.137067 0.92231 0.161296 transmembrane protein 2 (1-8D) A_33_P3285470|575 BAI1 brain-specific 0 −0.05105 0.740587 0.877379 1.043593 0.981359 1.087032 0.943179 angiogenesis inhibitor 1 A_33_P3349637, PCDH1 protocadherin 1 1.14639 0.880724 0.719095 1.730392 1.617984 0.976905 0.615231 −0.05447 A_24_P234838|5097 Probe ID PGEC3_P0 PGEC4_P1 PGEC5_P2 PGEC6_P3 PGEC7_P3 PGEC8_P3 PGEC9_P1 UP DN RANK OF ROKU A_23_P116898|2 0 9.59406 7.157472 7.528813 9.860452 8.219652 6.556471 UP 1 A_23_P100730|8631 0 3.810782 6.201985 4.472992 3.206003 5.065433 5.96643 UP 2 A_23_P42386|1081 −0.99842 10.71766 1.857644 5.788428 6.634753 4.684488 7.532835 UP 3 A_33_P3555368|440129 −0.18012 9.983083 8.175266 8.641662 8.977219 10.00043 7.684394 UP 4 A_23_P139687|121506 −0.98907 9.228296 8.811811 8.883856 8.268251 9.039125 8.557015 UP 5 A_23_P8801, 0 4.072534 3.200599 4.929774 4.858568 4.303244 4.35034 UP 6 A_33_P3249746|1577 A_23_P370588|3218 −0.92531 9.404708 10.30383 9.793105 8.89808 9.99541 9.997499 UP 7 A_23_P358917, −0.01001 3.309094 2.52227 4.212578 4.022702 3.577415 3.693563 UP 8 A_33_P3318117|1551 A_23_P7342|7365 −0.5183 4.158992 3.185945 3.905903 4.899543 3.221666 3.086537 UP 9 A_32_P231617, −1.03484 7.513394 8.080159 8.867767 9.567626 8.465519 10.48137 UP 10 A_33_P3390057|4071 A_23_P363316|3215 −0.95228 7.04726 7.470543 5.588046 6.209956 7.15297 6.704992 UP 11 A_23_P127107|119467 −0.83761 6.962229 6.551431 4.764102 6.47516 6.083357 4.311534 UP 12 A_23_P30693|5340 −0.8745 8.510991 5.362725 4.437788 6.666848 3.29827 3.723882 UP 13 A_23_P118203|124220 0.378361 5.464998 6.284544 6.994697 6.694204 5.627764 7.888292 UP 14 A_23_P78248|25984 −0.94729 8.808288 6.028291 6.920158 6.255255 7.542379 5.695623 UP 15 A_23_P148088|2266 −0.17596 9.342705 7.031907 6.834038 8.544293 6.004672 4.109532 UP 16 A_23_P216610|64420 −0.00838 2.128412 1.667598 1.802901 2.445431 1.935143 2.523052 UP 17 A_23_P27013|3219 −2.11611 10.41891 11.20704 9.506152 9.262839 11.66512 10.03637 UP 18 A_23_P130113|433 −0.12342 7.014019 6.201549 5.841208 6.829593 6.131578 4.691435 UP 19 A_23_P214300|2939 −0.35865 5.635105 5.279348 4.9628 5.921765 4.410652 3.013806 UP 20 A_33_P3262495, −1.13023 7.360002 5.773656 5.887572 5.233572 6.636807 5.072298 UP 21 A_33_P3268695|84858 A_23_P3221|58472 −0.17738 3.984718 1.484224 5.391895 4.375029 4.502015 7.972498 UP 22 A_33_P3256810|7104 −1.1231 7.715345 5.974287 6.129033 6.254088 6.471998 5.271347 UP 23 A_33_P3249224|570 0 3.236911 1.097169 2.189851 1.859661 4.325985 2.571649 UP 24 A_23_P118065|3294 0 7.495122 4.423458 4.043093 6.461859 2.75114 3.659675 UP 25 A_33_P3418000, −0.1002 1.308504 1.273732 1.391944 1.176373 1.179655 1.784656 UP 26 A_32_P116206|768211 A_33_P3304501|1045 −1.78302 9.857761 9.26749 9.236861 9.111102 9.584235 8.491552 UP 27 A_33_P3291154, −0.003 4.660577 4.117335 5.102535 5.288275 4.811791 6.012475 UP 28 A_23_P40866|26137 A_33_P3375541|915 −0.51468 1.857045 3.510579 4.033863 4.742079 2.310155 5.770374 UP 29 A_24_P334640|85315 0 2.511047 2.745831 2.905705 3.522153 2.834136 2.30866 UP 30 A_23_P69310|9034 −0.4149 3.994144 1.868846 3.169338 3.585423 4.959897 5.158014 UP 31 A_23_P28869|5786 −0.1162 1.103771 1.161767 0.903581 1.079373 1.200111 0.632035 UP 32 A_33_P3392142, −0.61671 5.500243 3.637479 4.054358 6.099155 4.047012 2.115805 UP 33 A_23_P382000|6718 A_23_P64721|8843 −0.719 2.94353 2.901486 3.764475 4.253921 2.74777 3.946737 UP 34 A_23_P17065|6364 −1.03577 4.614782 3.961754 5.097384 5.611992 4.692313 5.306599 UP 35 A_23_P259071, −1.67856 5.493373 1.45172 6.345245 6.856207 7.273076 9.134583 UP 36 A_33_P3419190|374 A_24_P896205|645722 −1.06721 4.438249 3.631331 4.211386 4.800885 4.27861 1.637881 UP 37 A_24_P124558|3224 −0.6797 7.155211 6.561634 4.355327 3.879619 7.785979 4.129494 UP 38 A_23_P58266|6286 −1.1063 5.261293 3.777145 5.844682 5.185188 5.58016 4.906141 UP 39 A_23_P31755|1392 −1.47379 6.521231 2.146891 3.870679 4.62909 5.690667 2.48346 UP 40 A_23_P215790, −0.96405 2.508869 2.020423 2.722858 3.215947 2.547208 3.044634 UP 41 A_33_P3351944, A_33_P3351955|1956 A_23_P127584|4837 −0.61342 5.73834 8.004148 6.256389 5.681221 6.308977 8.402271 UP 42 A_33_P3418421, 0.152302 3.60197 2.303726 1.987805 3.998466 2.677109 2.711808 UP 43 A_24_P217234, A_33_P3418417, A_33_P3418426|6519 A_23_P136671|7364 −1.92844 5.929523 5.387286 6.229324 7.095386 4.863998 5.771834 UP 44 A_23_P212968|10720 0 5.363499 3.846857 4.946187 6.432818 3.926768 3.583979 UP 45 A_24_P12435|135112 −0.52127 2.037577 1.577885 1.505384 2.244186 2.744535 1.510181 UP 46 A_23_P115261|183 −1.60228 8.573734 4.294716 5.255239 6.486434 7.018931 3.599419 UP 47 A_23_P44274, −0.50906 5.633089 5.508142 6.252135 7.527841 4.882538 4.416079 UP 48 A_24_P282251|2243 A_23_P171074|9452 0.90552 −2.29194 −3.52368 −5.8367 −4.2045 −3.52509 −8.516 DOWN 1 A_23_P132889|1400 0.577018 −3.87227 −2.91236 −4.51907 −3.12466 −4.38317 −3.8124 DOWN 2 A_23_P366376|6997 −0.20308 −7.62468 −8.93359 −8.90506 −6.96497 −7.85155 −10.2968 DOWN 3 A_33_P3360530 −0.22021 −4.97088 −6.19484 −5.98294 −5.10492 −4.84282 −7.20808 DOWN 4 A_33_P3408034 −0.16218 −4.84628 −6.04157 −5.60335 −4.88079 −4.72212 −6.00471 DOWN 5 A_23_P435407|2239 1.199933 −5.90605 −6.00413 −6.93013 −5.39623 −6.38798 −5.82359 DOWN 6 A_23_P119593|79852 0 −1.84214 −1.78773 −1.45394 −1.84792 −1.91593 −1.4764 DOWN 7 A_23_P72737, 0.445076 −4.62682 −5.62128 −5.61057 −5.32483 −4.46544 −8.59465 DOWN 8 A_33_P3423941|8519 A_23_P58953, 0.283805 −1.84637 −1.17777 −1.21441 −1.47292 −1.75658 −1.59893 DOWN 9 A_33_P3773261|4835 A_24_P357266|2925 1.155787 −4.43356 −5.95164 −6.6555 −5.28831 −4.03908 −6.22327 DOWN 10 A_33_P3353345, −0.37109 −2.53825 −3.0892 −3.28029 −2.79275 −3.62165 −3.19978 DOWN 11 A_33_P3280367|25830 A-24_P15502 0 −4.3981 −3.94634 −3.33916 −4.16933 −4.06356 −3.89262 DOWN 12 A_23_P76538|54997 0.542653 −4.80006 −3.75679 −4.47878 −4.16871 −6.09137 −4.21434 DOWN 13 A_24_P287043|10581 0 −3.9927 −3.46729 −2.97456 −3.77627 −3.70409 −3.57571 DOWN 14 A_33_P3285470|575 0.648405 −2.78643 −2.32866 −3.49812 −2.37101 −2.19061 −3.48521 DOWN 15 A_33_P3349637, 0 −4.00838 −3.4499 −4.08292 −4.13371 −3.85649 −3.97274 DOWN 16 A_24_P234838|5097
Example 7
Establishment of Primitive Gut Endoderm Cells (PGECs) from Various iPS Clones (FIG. 24)
(Methods)
[0128] In addition to TkDA3-4 (the fourth clone of TkDA3 of Example 1 (as supplied from Tokyo University)), iPS cell clones such as 1231A3-, 1383D2-, 1383D6-, Ff-01- or Ff-06-[iPS cells cultured on iMatrix (laminin; purchased from Nippi, Inc.) (iPS cell clones established from peripheral blood by Kyoto University)] were used to prepare PGECs. For preparation of PGECs, the period of differentiation induction must be optimized for each clone. Method of induction is as summarized in Table 6.
TABLE-US-00006 TABLE 6 Differentiation TKDA 1231A3/1383D2/1383D6/Ffl01/Ffl06 Coating Matrigel (growth factor reduced), RT, 2 hr Laminin 511, 37° C., 3 hrs D0 In the presence of RPMI/1640, B27 (2%), In the presence of RPMI/1640, B27 (2%), Activin A (100 ng/ml) and Wnt3a (50 ng/ml), Activin A (100 ng/ml) and Wnt3a (50 ng/ml), Rock Inhibitor (10 uM) Rock Inhibitor (10 uM) D1 In the presence of RPMI/1640, B27 (2%), In the presence of RPMI/1640, B27 (2%), Activin A (100 ng/ml) and Wnt3a (50 ng/ml) Activin A (100 ng/ml) and Wnt3a (50 ng/ml) D2 In the presence of RPMI, B27 (2%), BMP4 In the presence of RPMI, B27 (2%), BMP4 (0.5 ng/ml), bFGF (5 ng/ml), VEGF (10 ng/ml) (0.5 ng/ml), bFGF (5 ng/ml), VEGF (10 ng/ml) and Activin A (100 ng/ml) and Activin A (100 ng/ml) D3 In the presence of RPMI, B27 (2%), BMP4 In the presence of RPMI, B27 (2%), BMP4 (0.5 ng/ml), bFGF (5 ng/ml), VEGF (10 ng/ml) (0.5 ng/ml), bFGF (5 ng/ml), VEGF (10 ng/ml) and Activin A (100 ng/ml) and Activin A (100 ng/ml) D4 In the presence of SFD and BMP4 In the presence of SFD and BMP4 (0.5 ng/ml), bFGF (5 ng/ml), VEGF (10 ng/ml) (0.5 ng/ml), bFGF (5 ng/ml), VEGF (10 ng/ml) and Activin A (100 ng/ml) and Activin A (100 ng/ml) D5 In the presence of SFD and BMP4 Cells are differentiated by feeder-free culture (0.5 ng/ml), bFGF (5 ng/ml), VEGF (10 ng/ml) and then passaged at least once. and Activin A (100 ng/ml) *Medium conditions: SFD, bFGF (5 ng/ml), Passage Cells are differentiated by feeder-free VEGF (10 ng/ml), EGF (20 ng/ml), culture and then passaged at least once. A83-01 (0.5 uM) and Chir99021 (3 uM) *Medium conditions: SFD, bFGF (5 ng/ml), <Note> Cells are cultured in the presence of VEGF (10 ng/ml), EGF (20 ng/ml), Rock Inhibitor only at the first stage (initial A83-01 (0.5 uM) and Chir99021 (3 uM) day). <Note> Cells are cultured in the presence of Rock Inhibitor only at the first stage (initial day).
(Results)
[0129] Microscopic views of induced primitive gut endoderm cells (passage 0, Day 5) are shown in
[0130] Cell growth curve for each iPS clone is shown in
Example 8
Endodermal Tissue Reassembling Capacity of Transplanted PGECs (FIG. 25)
(Method)
[0131] One million PGECs prepared from iPS cell clone TkDA3-4 were transplanted into the subcapsular space of kidney in immunodeficient mice (TkNOG mice in which hepatic disorder had not been induced; Central Institute for Experimental Animals). The transplanted tissue was removed one month later, observed macroscopically and subjected to histological analysis.
(Results)
[0132] As a result of removal of tissues one month after transplantation, no apparent tumors such as teratoma or cancer were found to have formed (
[0133] As a result of immunohistochemical staining, PGEC-derived tissues formed various human endoderm-derived tissues (
Example 9
A Review of Functional Expression of PGEC-derived Liver Buds after Long-Term Culture (FIG. 26)
(Method)
[0134] Liver buds were prepared from PGECs (Passage 5, Day 5) using culture plates of low adhesive property. For liver bud preparation, PGEC-derived cells, umbilical vein endothelial cells (HUVEC) and mesenchymal stem cells (MSC) were mixed at a ratio of 10:7:1 and subjected to differentiation and induction in a medium which was a 1:1 mixture of LONZA HCM medium and EGM medium. Albumin concentration in the culture supernatant of PGEC-derived liver buds after differentiation and induction was evaluated with an enzyme-linked immunosorbent assay (ELISA) quantification kit (Bethyl Laboratories Inc.).
(Results)
[0135] Microscopic views of PGEC-derived liver buds prepared in vitro are shown in
[0136] Albumin secretion ability of PGEC-derived liver buds is shown in
Example 10
Ammonia Metabolizing Function of Differentiated and Induced PGEC-derived Liver Buds (FIG. 27)
(Method)
[0137] Liver buds derived from PGECs (P15) were differentiated and induced, and 2 mM NH.sub.4Cl was added to cell culture supernatant. Then, culture supernatant was collected at 0 hr, 3 hr, 6hr and 24hr, and ammonia concentration was measured with Ammonia Test (WAKO).
(Results)
[0138] It became clear that differentiated and induced PGEC-derived liver buds had a remarkable ammonia metabolizing function (
Example 11
Therapeutic Effect of PGEC-derived Liver Buds Transplantation on Fulminant Liver Failure Model (FIG. 28)
(Method)
[0139] Diphtheria toxin (DT: Sigma, St. Louis, Mo., USA; D0564-1MG) was administered intraperitoneally into 8-week old Alb-TRECK/SCID mice (supplied from Tokyo Metropolitan Institute of Medical Science) (DT dose: 1.5 μg/kg). Subsequently, onset of fulminant liver failure was confirmed by finding that the AST value 48 hrs after administration was 8000 IU/L or more. Fulminant liver failure mouse individuals t satisfied this condition, PGEC spheres (n=9) or PGEC-derived liver buds (n=8) were transplanted under anesthesia into the subcapsular space of kidney. Transplantation groups and control group (non-transplantation group; Sham (n=13)) were compared for improvements in their survival ratios.
(Results)
[0140] It was revealed that the survival ratio of the groups transplanted with PGEC-derived spheres or liver buds was improved compared to that of non-transplanted group (
[0141] [Example 12] Confirmation of Differentiation and Induction into Hepatocytes/Bile Duct Epithelial Cells by Immunohistochemical Staining (
(Method)
[0142] PGEC-derived liver buds were transplanted into the subcapsular space of kidney in Alb-TRECK/SCID mice (the mice used in the experiment of
(Results)
[0143] PGEC-derived liver bud-transplanted tissues forming at one month after the transplantation were vascularized tissues. No findings were observed in which teratoma or malignant tumor was suspected (
[0144] The results of immunohistochemical staining revealed that liver tissues showing stainability for human nucleus specific antigen, human albumin (hepatocytes), human CK7 (bile duct epithelial cells) and human CD31 (blood vessels) had been formed (
[0145] All publications, patents and patent applications cited herein are incorporated herein by reference in their entirety.
INDUSTRIAL APPLICABILITY
[0146] According to the present invention, organ cells for preparing tissues and organs can be prepared in high quality and in a stable manner. The technique of the present invention is applicable to drug discovery screening and regenerative medicine.