METHOD AND DEVICE FOR LABEL-FREE, SINGLE BIOLOGICAL CELL DIELECTRIC SPECTROSCOPY
20230168174 · 2023-06-01
Inventors
- Robert Blick (Hamburg, DE)
- Paul Gwozdz (Hamburg, DE)
- Udai Raj SINGH (Hamburg, DE)
- Andreas GUSE (Hamburg, DE)
- Lola HERNANDEZ (Hamburg, DE)
- Björn-Philipp DIERCKS (Hamburg, DE)
Cpc classification
G01N22/00
PHYSICS
International classification
G01N22/00
PHYSICS
Abstract
Provided is a label-free, single biological cell dielectric spectroscopy method, including the steps of: translocating a biological cell through a micropore or channel embedded in a substrate and interfaced with a coplanar waveguide while the biological cell experiences at least one RF field of at least 700 MHz provided via an RF input port to the coplanar waveguide; performing a time domain measurement of at least one RF signal reflected from or transmitted to a device under test (DUT); and determining an amplitude change and a phase change based on the reflected or transmitted at least one RF signal due to the translocating biological cell to determine an internal state or a morphological state of the biological cell. Also disclosed herein are devices for performing the dielectric spectroscopy method.
Claims
1. A label-free, single biological cell dielectric spectroscopy method, the method comprising: translocating a biological cell through a micropore or channel embedded in a substrate and interfaced with a coplanar waveguide while the biological cell experiences at least one RF field of at least 700 MHz provided via an RF input port to the coplanar waveguide; performing a time domain measurement of at least one RF signal reflected from or transmitted to a device under test (DUT); and determining an amplitude change and a phase change based on the reflected or transmitted at least one RF signal due to the translocating biological cell to determine an internal state or a morphological state of the biological cell.
2. The label-free, single biological cell dielectric spectroscopy method according to claim 1, wherein the translocating biological cell simultaneously experiences a plurality of RF fields of different wavelengths.
3. The label-free, single biological cell dielectric spectroscopy method according to claim 2, wherein the time domain reflectometry measurement is performed with regard to a plurality of RF signals simultaneously reflected from the RF input port.
4. The label-free, single biological cell dielectric spectroscopy method according to claim 3, wherein the amplitude change and the phase change is determined for each of the simultaneous RF signals.
5. The label-free, single biological cell dielectric spectroscopy method according to claim 1, wherein the coplanar waveguide is configured as a multi-mode coplanar waveguide.
6. The label-free, single biological cell dielectric spectroscopy method according to claim 1, wherein the coplanar waveguide is configured as a multi-mode coplanar waveguide by providing a tapered transition electrode.
7. The label-free, single biological cell dielectric spectroscopy method according to claim 6, wherein the tapered transition electrode is tapered off toward the micropore or the channel.
8. The label-free, single biological cell dielectric spectroscopy method according to claim 1, wherein the internal state of the biological cell is a cell death state of the biological cell.
9. The label-free, single biological cell dielectric spectroscopy method according to claim 1, further comprising: detecting apoptotic cell death of the biological cell if the determined phase change is a predetermined value below a corresponding phase change of a non-apoptotic biological cell while the determined amplitude change corresponds to an amplitude change of the non-apoptotic biological cell.
10. A device for performing label-free, single biological cell dielectric spectroscopy, the device comprising: a micropore or channel embedded in a substrate and interfaced with a coplanar waveguide, the micropore or channel being configured for translocating a biological cell through a micropore while the biological cell experiences at least one RF field of at least 700 MHz provided via an RF input port to the coplanar waveguide; a measurement unit for performing a time domain measurement of at least one RF signal reflected from or transmitted to a device under test (DUT); and a determination unit for determining an amplitude change and a phase change based on the reflected at least one RF signal due to the translocating biological cell to determine an internal state of the biological cell.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0009]
[0010]
[0011]
[0012]
[0013]
[0014]
[0015]
[0016]
[0017]
DETAILED EMBODIMENTS
[0018] Example embodiments of the invention are now described in detail with reference to the accompanying figures. It is noted that the following description contains examples only and should not be construed as limiting the invention.
[0019] According to an embodiment, a label-free (i.e. without using dyes, biomarkers or the like), single biological cell dielectric spectroscopy method is provided and comprises the following steps.
[0020] A biological cell is translocated through a micropore (MP) or channel. The MP or channel is embedded in substrate and interfaces with a coplanar waveguide (CPW) while the biological cell experiences at least one RF field of at least 700 MHz provided via an RF input port to the coplanar waveguide.
[0021] Here, the translocation through the pore may be achieved by a voltage or pressure gradient or suction using a pump (induced fluidic flow driving translocation). Translocation times of cells through the MP or channel are typically in the sub-microsecond to millisecond range.
[0022] In addition, the diameter of the MP or channel may be between 50 nm and 50 μm, typically has a conical shape and is filled with an appropriate electrolyte. The MP or channel is positioned at one end (open end) of a signal line of the CPW which is provided on top of the substrate.
[0023] The at least one RF field of at least 700 MHz propagates along the CPW from an RF input reaches the one end of the signal line and creates a strong electric field between itself and the opposing ground electrode. A biological cell which is translocating through the pore/channel is acted upon the electric field, locally changing the dielectric permittivity of the sensing volume and thus changing temporarily the electrical parameters of the device; this modulation can be measured in reflection or transmission and the measured quantities will be used for cell characterization
[0024] According to a further step of the label-free, single biological cell dielectric method, a time domain measurement of at least one RF signal reflected from or transmitted to a Device under test (DUT) is performed. In one preferred embodiment, the DUT is the input port and the time domain measurement is preformed on the RF signal reflected back to the input port. Here, the reflected RF signal is an amplitude- and phase-modulated signal due to the translocating biological cell.
[0025] According to a further step of the label-free, single biological cell dielectric method, an amplitude change and a phase change is determined from the reflected or transmitted at least one RF signal due to the translocating biological cell to determine an internal state or a morphological state of the biological cell. The amplitude and phase changes are transient changes indicating that the biological cell is translocating through the MP or channel. The present inventors have further surprisingly realized that a particular internal cell state such as a particular cell death state (apoptotic cell death (programmed cell death), necrotic cell death), a particular cell differentiating state, or a particular morphological state of the biological cell such a wrinkly cell membrane, an intact cell membrane or the like can be determined from the transient changes of amplitude and phase.
[0026] Advantageously, the label-free, single biological cell dielectric spectroscopy method can be performed in such a way that the translocating biological cell simultaneously experiences a plurality of RF fields of different wavelengths, for example up to 5 different RF fields simultaneously. Accordingly, the transient amplitude and phase changes are preferably determined for each of the simultaneous RF signals.
[0027] Such a configuration allows for a tomographic characterization of the translocating biological cell at the plurality of RF fields. In particular, the internal state or the morphological state of the biological cell can thus be determined using a plurality of simultaneously applied RF fields. As such, this allows for a combination of ultrafast and high-throughput single cell determination (such a cell counting, and cell size determination) with a corresponding simultaneous tomographic characterization.
[0028] Advantageously, the coplanar waveguide may be configured as a multi-mode coplanar waveguide, i.e. to provide a sufficient bandwidth to provide signal line transmission for the plurality of simultaneously applied RF fields.
[0029] For example, the multi-mode coplanar waveguide configuration may be achieved by providing a tapered transition electrode or tapered CPW signal line. In particular, the tapered transition electrode or tapered CPW signal line may be tapered off toward the MP or the channel not only at the tips of the signal line (to locally increase the field strength) but over essentially the entire length of the transition electrode or CPW signal line. As will be further discussed below, this specific configuration of the tapered signal line does not have a constant gap between itself and the ground metallization but is tapered off, thus introducing a varying gap over the essentially entire length of the signal line (i.e. starting from the RF input). This is in difference to standard CPW signal lines (such as in U.S. Pat. No. 10,151,741) in which a constant gap is provided (in an area other than the tip of the signal line).
[0030] In a preferred embodiment, apoptotic cell death of the biological cell (as an example of the internal state of the cell) may be if the determined phase change is a predetermined value below a corresponding phase change of a non-apoptotic biological cell while the determined amplitude change corresponds to an amplitude change of the non-apoptotic biological cell. In other words, apoptotic cell death may be determined from the observation that the phase change decreases (as compared to an expected phase change of a cell not undergoing programmed cell death, i.e. a healthy cell) while the amplitude change remains essentially unchanged. The skilled person understands that this may be determined in conjunction with scatterplots (representing phase and amplitude information and the determination of different clusters), or the like.
[0031] A corresponding device for performing label-free, single biological cell dielectric spectroscopy comprises: a micropore or channel embedded in a substrate and interfaced with a coplanar waveguide, the micropore or channel being configured for translocating a biological cell through a micropore while the biological cell experiences at least one an RF field of at least 700 MHz provided via an RF input port to the coplanar waveguide; a measurement unit for performing a time domain measurement of at least one RF signal reflected from or transmitted to a device under test (DUT, e.g. the RF input port); and a determination unit for determining an amplitude change and a phase change based on the reflected at least one RF signal due to the translocating biological cell to determine an internal state of the biological cell.
[0032] The present device for performing label-free, single biological cell dielectric spectroscopy comprises a coplanar waveguide (CPW) on top of a substrate, e.g. a microscope glass slide. A micropore (MP) or a channel is drilled directly into the substrate (e.g. glass), e.g. by laser ablation from an ArF excimer laser. This allows for a rapid preparation of the sensing region because the pore drilling can be tuned in a way that the pore diameter can be varied from about tens of nm (e.g. 50 nm) to tens of μm (e.g. 50 μm). As the characterization of T cells is exemplified in the present description, the following explanation will use a MP or channel with a diameter of 11 μm as an example. The skilled person understands that the concept of the present invention can be applied to other biological cells and different diameters.
[0033] The MP or channel is embedded in the substrate and may be embedded between the open end of the signal line of the CPW and a neighbouring ground metallization (see
[0034] Here, the amplitude and the phase of the reflected or transmitted wave is used to characterize the individual cells, in particular to determine an internal state or a morphological state of the biological cells. As the chip is specifically designed to operate at RF frequencies larger than 700 MHz the device will most prominently be sensitive to the intracellular medium of the tested biological cells, e.g. Jurkat T cells. By resuspending Jurkat T cells from a physiological into an unphysiological buffer ist is possible to induce apoptosis (programmed cell death) of the cells which can be measured by tracing the amplitude and/or phase change of the reflected or transmitted signal over the course of the time.
[0035] A schematic of the RF chip (device) is shown in
[0036] The signal line has a length of e.g. 3.4 cm which determines the point of operation. For the metallization of the CPW gold (Au) with a thickness of 110 nm may be thermally evaporated on top of a 10 nm chromium (Cr) adhesion layer after structuring the CPW with standard optical lithographic methods.
[0037] The signal line, on which the RF wave is traveling to the sensing region (region around MP or channel through which the biological cell is translocating), has an open end at which a MP is located as is illustrated in a schematic of the top view of the sensing region in
[0038] The MP or channel may be drilled into the glass substrate after the lithography steps used for patterning the Au CPW and the SU-8 fluidic chamber. Direct laser ablation from an ArF excimer laser may be used from the back side of the glass chip. This results in conical pores with tunable pore diameters (between 50 nm and 50 μm) at the signal region. Preferably, the parameters of the drilling process may be adjusted in such a way that a MP or channel with an open diameter of 11 μm is produced. As the pore is drilled from the backside of the RF chip the positioning of the resulting MP in the sensing region is not trivial. The positioning may be done manually and due to the accuracy of the sample stage in the laser writing unit the MP can be positioned with an accuracy of about ±2 μm. To achieve a perfect alignment of the MP with the signal and ground metalization the electrodes are adjusted finally using focused ion beam (FIB) milling and FIB induced metal deposition. For the FIB induced metal deposition, in a first step the Au in the vicinity of the MP is milled away with the gallium beam of the FIB. Additionally, if the pore geometry is not satisfactory at this stage it can be cleaned up with the Ga beam, too. In a next step Pt electrodes are locally patterned such that their tips will have direct contact with the MP. This is done using a Pt containing precursor gas that is locally illuminated with the Ga beam I in such a way that elementary Pt is deposited, where the precursor gas is hit by the Ga beam. Although the steps allow for precise and local Pt deposition, the deposition step leads to Pt sputtering which albeit leaving only a thin layer on the surrounding glass, still being thick enough to short circuit the signal line with the ground. Therefore, finally the area between the Pt electrode tips is milled with the Ga beam again cleaning the area from the sputtered Pt. An SEM image of the final signal region, as it is used for cell characterization is shown in
[0039] Underneath the glass chip a screw cap may be glued in such a way that a pump can be interfaced with the chip (see
[0040] The RF frequency which is used for the measurements is around 700 MHz. At this frequencies the AC impedance of cell membrane is substantially lowered, because the cell membrane acts mostly like a capacitor with a capacity of Cm and a resistance of Rm and thus the electrical field can penetrate the cell membrane as schematically shown in
[0041] A detailed schematic of the whole setup is shown in
f.sub.IF=f.sub.RF±f.sub.IF (1)
[0042] For the examples presented here, an frequency difference of 100 MHz may be chosen. Therefore, the f.sub.RF+f.sub.IF component has a frequency of f.sub.IF=2f.sub.RF+100 MHz and the f.sub.RF−f.sub.IF component has a frequency of f.sub.IF=100 MHz. The resulting signal may be measured with a lock-in amplifier which can process frequencies as high as 600 MHz. Due to this bandwidth (BW) limitation of the lock-in input, the high frequency component of the mixing process is filtered out by the input of the lock-in and the measured signal is an AM wave carried by a carrier frequency of 100 MHz.
[0043] At this frequency the AM input can be directly demodulated by the lock-in using the internal signal generator as a reference wave which is phase locked to the IF signal. As the heterodyne mixing not only preserves the amplitude modulation but preserves a phase of the signal too, a translocating particle can be characterized by three measurement quantities, namely the amplitude of the reflected or transmitted signal, the phase change and the translocation in the following referred to as the width of the event.
[0044] Before the translocating particles can be measured the RF chip should preferably be impedance-matched, e.g. to the standard 50Ω transmission line setup. A schematic of the impedance matching circuit is shown in
[0045] This circuit allows to tune the impedance of the overall chip to the 50Ω transmission line to which the chip is connected. It is well known that in RF circuits any mismatch in impedance between the source and a load leads to a reflection of the RF wave back into the source (or to a transmission into a device under test (DUT)). To prevent that the load has to be impedance-matched in such a way that the reflection at the frequency at which the measurement is preformed is minimized according to
[0046] A DC voltage which is applied to the tunable varactor diode allows to changed Z.sub.RF chip such that at a certain RF frequency the chip impedance is similar to Z.sub.0. Consequently, the RF field is absorbed by the chip thus reaching the signal region.
[0047] Results from the impedance matching are given in
[0048] In
[0049] In
[0050] In
[0051] For the analysis of this data first a moving average may be applied to the reflected amplitude to produce an estimator for the baseline signal without the temporal cell signals. The window in which the average is evaluated is chosen in such a way that the time evolution of the signal is reproduce by simultaneously rejecting the modulation due to the translocating cells. The moving average is subtracted from the raw data thus leading to a baseline amplitude centered around zero. In this situation a peak finding algorithm may be applied which detects the individual translocation events if they exceed a threshold value of 3×σ of the moving standard deviation. In this manner the position of the transient peaks is determined and the time stamp for every peak is stored globally. Based on the position of the transient AM the position of the first positive phase peak is determined. The phase peak coincides with the position of the amplitude peak. Finally, the peak finding algorithm is used to determine the following negative phase peak. In summary three quantities can be deduced from one translocation event namely the amplitude, the phase, and the width of the event. These measurement quantities are exemplarily shown in
[0052] It was already mentioned that the baseline amplitude of the reflected signal may intentionally be set to 0.5 mV by detuning the varactor voltage away from the point of optimal impedance match. This is done because in the presented configuration the lock in amplifier is not capable to phase lock the reflected signal if the input amplitude is too low. In the PSD discussed in
[0053] Three electrolytes are used for the examples, all of which are summarized in the following Table. The main difference between the electrolytes is their concentration of KCl and NaCl. While the bath solution and the Ca.sup.2+ buffer are physiological buffers the pipette solution is not physiological if T cells are suspended in it:
TABLE-US-00001 Electrolyte Solution Recipe pH Cite Bath solution 5.0 mM KCl, 140 mM NaCl, 2 mM MgCl.sub.2, 7.4 4 2 mM CaCl.sub.2, 10 mM HEPES, 5 mM Glucose Pipette solution 140 mM KCl, 0 mM NaCl, 2 mM MgCl.sub.2, 7.4 4 1 mM CaCl.sub.2, 10 mM HEPES, 2.5 mM EGTA Ca.sup.2+ buffer 5.0 mM KCl, 140 mM NaCl, 1 mM CaCl.sub.2, 7.4 5 1 mM MgSO.sub.2, 1 mM NaH.sub.2PO.sub.4, 5.5 mM Glucose
[0054] Particles that are measured in the flow cytometer are polystyrene beads with a diameter of 6 μm and Jurkat T cells.
[0055] Here, the beads may be stored at a specific concentration given by the supplier and prior to experiments they are diluted in the desired buffer solution to a concentration of about 10.sup.6/ml. This concentration is a compromise between a reasonable event rate and the time it is possible to measure before the MP clogs. Especially at experiments with beads clogging can ultimately destroy the RF chip because cleaning the chip from polystyrene beads can be impossible.
[0056] Jurkat T cells are kept in culture in RPMI 1640 medium with 7.5% new-born calf serum and 1.2% penicillin/streptomycin. They are incubated at 37° C. at 5% CO.sub.2. Under these conditions they are diluted every second day, except of the weekend thus keeping the concentration of the cells constant.
[0057] For the experiments the cells are transferred into a measurement buffer. Different buffer are used but the process of transferring is always the same. 5 mL of the cell culture is centrifuged for 5 min at 2000 rpm. The medium is decanted from the resulting cell pellet and the desired buffer is given to the pellet and the cells are gently re-dispersed, to wash the cells. A second similar centrifugation step follows and the buffer is decanted again. Finally, fresh buffer is added to the cell pellet and the re-dispersed sample is ready for the RF measurement.
[0058] The present RF device is first tested with a sample of polystyrene beads with a diameter of 6 μm. Furthermore, cells which are suspended in a physiological Ca.sup.2+ measurement buffer are measured. Additionally, the same cells are transferred into a cell buffer which is non-physiological (i.e. the cells are transferred into pipette solution). The main difference between this buffer and the Ca.sup.2+ buffer is the concentration of the main salt. A physiological Ca.sup.2+ buffer contains mostly NaCl (140 mM). The pipette solution is used in standard patch clamp experiments as the buffer inside the patch pipette thus mimicking the intracellular environment. It contains mostly KCl (140 mM). Outside the cell though, it is not physiological and leads to cell death as an internal state of the biological cell which will be sensed with the RF chip.
[0059] Results from the three experiments are shown as scatterplots in
[0060] In
[0061]
[0062] Finally, in
[0063] Another observation that can be made is that there is a minimal translocation time which correlates linearly with the amplitude. This minimal translocation time is marked with a dashed black line. The bigger the amplitude the longer the cells tend to stay in the sensing region. This can be explained by the fact that the amplitude is partially a function of the size of the translocating particle. As most of the cells are bigger than the MP it is expected that they will need to squeeze through the pore while having mechanical contact to the pore walls. The bigger the cells are, the bigger the reflected amplitude and consequently the more mechanical contact which slows the cell down. At a critic amplitude the linear correlation disappears.
[0064] It was already shown in
[0065] Green dots represent the data from the cell which were transferred into the physiological buffer. Under these conditions it is not expected that the cells are biologically altered. Patch clamp measurements were done as a control and the measurements indicate that the cells tend to be stable and unaffected over hours. This behavior is in accordance to the findings given in
[0066] In contrast to that, cells which are transferred into an unphysiological buffer do show a completely different behavior. The effect has been observed in the measurement shown in
[0067] To interpret the results the time evolution of the amplitude and the phase is plotted versus the occurrence of the events during the experiment. These results are given in
[0068] In the experiment in which the cells are transferred into the unphysiological pipette solution (
[0069] As such a behavior is not observed for neither the bead measurements nor the cell measurements in Ca.sup.2+ buffer and bath solution we conclude that the environmental stress caused by the unphysiological conditions causes this effect. To further study this effect time resolved microscopy on the T cells may be performed when they are suspended in the pipette solution. The results from this experiments are shown in
[0070] The presented results show that it is possible to measure the translocation of Jurkat T cells and polystyrene beads with diameters of 6 μm through a MP with a diameter of 11 μm. A slight detuning of the RF chip advantageously allows us to measure not only the temporal modulated amplitude of the reflected signal but the simultaneous phase change that are caused by the translocating particles. Cells that are measured in a physiological buffer show a stable correlation between the amplitude and the phase. In contrast to that, if the cells are suspended in the unphysiological buffer the phase changes during the experiment which can be traced over time. Additionally, it is observed that within the unphysiological buffer the overall amplitude of the translocation events is increases significantly when compared to the results of cell translocation in the physiological buffer. This effect is correlated to an increased membrane conductivity which is know from literature and here is measured using patch clamping experiments. This effect can be qualitatively reproduced using FEM simulations on a model system. Time domain optical microscopy proved that the cells undergo apoptosis so that it has been conclusively be demonstrated to sense this biological process in the time domain.