AUTOMATIC ANALYZER AND AUTOMATIC ANALYSIS METHOD
20230167480 · 2023-06-01
Assignee
Inventors
Cpc classification
C12Q1/18
CHEMISTRY; METALLURGY
G01N35/00
PHYSICS
International classification
Abstract
The present invention provides a technique for estimating a bacterial concentration from a sample in which bacteria and impurities are mixed, and adjusting the bacterial concentration in the sample to a desired value. An automatic analyzer according to the present invention introduces a substance that destroys impurities into a sample in which bacteria and the impurities are mixed, separates the destroyed impurities and the bacteria, and then takes out the bacteria by a filter, and estimates the concentration of bacteria in the sample according to correspondence data between the amount of impurities remaining on the filter and the concentration of bacteria in the sample.
Claims
1. An automatic analysis method for analyzing a sample containing bacteria and impurities, the method comprising: introducing a substance that destroys the impurities into the sample; separating the impurities and the bacteria from each other in the sample into which the substance has been introduced; taking out the bacteria from the sample using a filter that takes out the bacteria from the sample from which the impurities and the bacteria have been separated; reading correspondence data describing correspondence between a numerical value representing an amount of the impurities remaining on the filter and a concentration of the bacteria in the sample from a storage unit that stores the correspondence data; and estimating a concentration of the bacteria in the sample by referring the correspondence data using a numerical value representing the amount of the impurities remaining on the filter after taking out the bacteria from the sample.
2. The automatic analysis method according to claim 1, wherein the sample contains blood cells as the impurities, the substance is a surfactant, and the surfactant comprises at least one of: an anionic surfactant having a hydrophilic moiety and a hydrophobic moiety, the hydrophobic moiety being a chain hydrocarbon; or a surfactant having a hydrophilic moiety and a hydrophobic moiety, the hydrophobic moiety having a cyclic hydrocarbon.
3. The automatic analysis method according to claim 1, wherein the filter is a filtration filter that separates the impurities and the bacteria by filtering the sample, and the estimating the concentration of the bacteria includes detecting the amount of impurities remaining on the filter using an image obtained by imaging without staining the impurities remaining on the filter, and the estimating the concentration of the bacteria includes referring the correspondence data using the amount of the impurities detected using the image.
4. The automatic analysis method according to claim 3, wherein the automatic analysis method further comprises capturing an RGB image as the image, and the estimating the concentration of the bacteria includes converting the RGB image into an HSV color space image, and the estimating the concentration of the bacteria includes using a saturation value on the HSV color space image of the impurities remaining on the filter as a numerical value representing the amount of the impurities remaining on the filter.
5. The automatic analysis method according to claim 3, wherein the automatic analysis method further comprises capturing an RGB image as the image, and the estimating the concentration of the bacteria includes converting the RGB image into an HSV color space image, and the estimating the concentration of the bacteria includes using a feature amount represented by a hue value, a saturation value, and a brightness value on the HSV color space image of the impurities remaining on the filter as a numerical value representing the amount of the impurities remaining on the filter.
6. The automatic analysis method according to claim 1, wherein the estimating the concentration of the bacteria includes obtaining a result of detecting the impurities from an optical sensor that detects at least a largest one of RGB color components of the impurities, and the estimating the concentration of the bacteria includes using a result of detection of the impurities remaining on the filter by the optical sensor as a numerical value representing the amount of the impurities remaining on the filter.
7. The automatic analysis method according to claim 1, wherein the filter is a filtration filter that filters the impurities and the bacteria by filtering the sample, the automatic analysis method further comprises detecting the amount of the impurities remaining on the filter, the estimating the concentration of the bacteria includes obtaining another detection result by detecting the amount of the impurities in the sample, separately from the amount of the impurities detected in the detecting of the amount of impurities remaining on the filter, and the estimating the concentration of the bacteria includes correcting the amount of the impurities detected in the detecting of the amount of the impurities remaining on the filter using the another detection result, and referring the correspondence data using the corrected amount of the impurities.
8. The automatic analysis method according to claim 1, wherein the automatic analysis method further comprises performing a drug sensitivity test of the bacteria to a drug, and the performing the drug sensitivity test includes, after the concentration of the bacteria in the sample is estimated, performing the drug sensitivity test for the bacteria in the sample without culturing the bacteria in the sample.
9. The automatic analysis method according to claim 8, wherein the automatic analysis method further comprises diluting the sample, and the diluting the sample includes, after the concentration of bacteria in the sample is estimated, diluting the sample to create a test sample having a concentration of the bacteria necessary for performing the drug sensitivity test, and the performing the drug sensitivity test includes performing the drug sensitivity test on the test sample created in the diluting of the sample.
10. The automatic analysis method according to claim 8, wherein the performing the drug sensitivity test includes capturing an image of a sample placed in an incubator maintained at 35 to 37° C. by an imaging device, and the performing the drug sensitivity test includes determining a minimum inhibitory concentration of the drug by measuring a growth rate of the bacteria using an image of the sample captured by the imaging device.
11. The automatic analysis method according to claim 1, wherein a filtration pore size of the filter is 1 to 40 μm, and a material of the filter is a hydrophobic material.
12. The automatic analysis method according to claim 1, wherein the sample is a blood sample, and the impurities include at least red blood cells in blood.
13. An automatic analyzer for analyzing a sample containing bacteria and impurities, the automatic analyzer comprising: a separator that separates the impurities and the bacteria from each other in the sample into which a substance that destroys the impurities has been introduced; a filter that takes out the bacteria from the sample from which the impurities and the bacteria have been separated; a storage unit that stores correspondence data describing correspondence between a numerical value representing an amount of the impurities remaining on the filter and a concentration of the bacteria in the sample; and an arithmetic unit that estimates a concentration of the bacteria in the sample by referring to the correspondence data using a numerical value representing the amount of the impurities remaining on the filter after taking out the bacteria from the sample.
Description
BRIEF DESCRIPTION OF DRAWINGS
[0017]
[0018]
[0019]
[0020]
[0021]
[0022]
[0023]
[0024]
[0025]
[0026]
[0027]
DESCRIPTION OF EMBODIMENTS
[0028]
[0029] In step S10, a surfactant is added to the blood sample to destroy blood cells. As the amount of blood to be treated increases, the number of bacteria finally obtained increases, and thus it is preferable to pretreat a larger sample. However, since the amount of waste liquid also increases, it is preferable to pretreat about several mL to 10 mL per sample. The surfactant is preferably (a) an anionic surfactant having hydrophilic and hydrophobic moieties and the hydrophobic moiety being a chain hydrocarbon, or (b) a surfactant having hydrophilic and hydrophobic moieties and the hydrophobic moiety having a cyclic hydrocarbon, or a combination of (a) and (b). Specifically, the former includes sodium dodecyl sulfate, lithium dodecyl sulfate, and sodium N-lauroyl sarcosine, and the latter includes saponin, sodium cholate, sodium deoxycholate, 3-[(3-cholamidopropyl)dimethylammonio]-1 propanesulfonate, and 3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxy-1 propanesulfonate. The next step S11 may be performed immediately after the addition of the surfactant, but the reaction may be allowed to stand for about 5 to 15 minutes to wait for completion of the reaction.
[0030] In step S11, centrifugation is performed in order to remove components in the blood cells destroyed by the surfactant and flowed out, for example, hemoglobin and the like, and then, the supernatant is removed and cleaned. In this step, for example, it is preferable to perform centrifugation at 2000 G for about 5 to 10 minutes. However, it is sufficient as long as bacteria and blood cell components that have not been destroyed by the surfactant and hemoglobin and the like that have flowed out can be separated, and the centrifugation speed and the centrifugation time are not limited thereto. The cleaning is performed using pure water, physiological saline or the like, and may be performed only once or a plurality of times.
[0031] In step S12, the sample is filtered by a filter in order to further remove the blood cell component that could not be destroyed by the surfactant and impurities in the medium. By using a filter with a pore size (mesh interval) larger than that of bacteria, bacteria are allowed to pass through, and impurities other than bacteria are captured by the filter. For example, it is preferable to use a filter with a pore size of 1 to 40 μm. When the amount of impurities is large, filtration may be performed a plurality of times, such as filtration with a filter with a large filtration pore size and then filtration with a filter with a small filtration pore size. In order to prevent bacteria from being captured in the filter, it is preferable to use a filter made of a hydrophobic material. By the above steps S10 to S12, it is possible to remove impurities other than bacteria from the blood sample and to extract bacteria.
Embodiment 1
[0032] In Embodiment 1 of the present invention, a method is shown that obtains a sample having a bacterial concentration adjusted to a desired value from a blood sample containing bacteria. Note that the present embodiment is merely an example, and is not limited to this configuration. Pretreatments of S10 to S12 were performed using blood samples containing E. coli and S. aureus. The blood samples were prepared according to the following procedure. Into a blood culture bottle containing drug-adsorbing beads, 10 mL of blood derived from a healthy volunteer and 0.1 mL of a bacterial suspension whose concentration had been previously adjusted to about 150 CFU/mL from colonies were introduced to prepare blood equivalent to that of an actual sepsis patient. Thereafter, the sample was introduced into a blood culture device and cultured, and when the blood culture became positive, the sample was taken out and used for an experiment. In addition, a sample corresponding to a negative control having a blood bacterial concentration of 0 CFU/mL cultured without introducing the bacterial suspension was also prepared, and the bacterial concentration was changed by appropriately diluting the sample.
[0033]
[0034]
[0035] Since the redness of the filter increases according to the amount of impurities such as red blood cells contained in the sample, the reason why the result of
[0036]
[0037] The specific concentration of surfactant used in the treatment can be defined in the following range. Usually, the concentration of red blood cells in blood is on the order of 10.sup.9/mL, and if a 1 mL sample is pretreated, the number of red blood cells in the sample is 10.sup.9. Here, the range of impurities that can be estimated from the tone of the filter shown in
[0038] Note that the range of the surfactant concentration shown here is, for example, a case where 1 mL of sample is pretreated, and when the volume to be treated increases, it is preferable to increase the concentration of the surfactant so that the destruction rate of red blood cells increases accordingly. For example, when 10 mL of sample is pretreated, a surfactant having a concentration capable of destroying 99 to 99.99% of red blood cells is required, and the concentration may vary depending on the throughput of the sample.
[0039] Specifically, the concentration of the surfactant capable of destroying 99 to 99.99% of red blood cells in blood containing bacteria is in the range of 0.05 wt % to 0.5 wt %, assuming an example of sodium dodecyl sulfate, which is an anionic surfactant having hydrophilic and hydrophobic moieties and the hydrophobic moiety being a chain hydrocarbon. Regarding other surfactants such as lithium dodecylsulfate and sodium N-lauroyl sarcosine, the concentration of the surfactant is preferably a concentration capable of destroying a desired red blood cell.
[0040] As other surfactants, for example, regarding saponin, sodium cholate, sodium deoxycholate, 3-[(3-cholamidopropyl)dimethylammonio]-1 propanesulfonate, and 3-[(3-cholamidopropyl)dimethylammonio]-2 hydroxy-1 propanesulfonate, which are surfactants having hydrophilic and hydrophobic moieties and a cyclic hydrocarbon as a hydrophobic moiety, the types of surfactants may be mixed.
[0041] In Embodiment 1, 2.7 mL of blood sample was treated with a surfactant such as sodium dodecyl sulfate having a final concentration in the range of 0.05 wt % to 0.5 wt %, capable of destroying 99 to 99.99% of red blood cells in blood containing bacteria.
[0042]
[0043] In step S50, the filter is imaged, and the color of the impurities remaining on the filter is acquired. In this flowchart, since the amount of impurities is estimated based on the color of red blood cells remaining on the filter, it is not necessary to stain a sample and impurities.
[0044] In step S51, correspondence data describing correspondence between the color of the impurities remaining on the filter and the actual blood bacterial concentration is read out, and the estimated blood bacterial concentration is calculated by referring to the correspondence data using the color acquired from the filter image. Specifically, regarding the color of the impurities remaining on the filter and the actual blood bacterial concentration, for example, a calibration curve represented by a single logarithm is acquired, and the blood bacterial concentration estimated from the data of the calibration curve is calculated. The correspondence data is illustrated in
[0045] In step S52, the sample is diluted to obtain a desired bacterial concentration based on the blood bacterial concentration estimated in S51. For example, when the blood bacterial concentration estimated in S51 is 5×10.sup.8 CFU/mL, if the desired bacterial concentration is 5×10.sup.5 CFU/mL, 1000-fold dilution is performed. When the blood bacterial concentration estimated in S51 has not reached the desired bacterial concentration, it is preferable to proceed to step S53 and determine that the specimen is a defective specimen. When it is determined as a defective specimen, it is difficult to prepare a specimen suitable for sensitivity test, and thus the blood culture bottle is further cultured to grow the bacteria, and then the process returns to step S10. Alternatively, an identification test or a sensitivity test may be performed using colonies obtained by performing isolation and cultivation.
[0046] In step S54, an identification test and a sensitivity test are performed using the prepared bacterial suspension. Any method may be used as the inspection method. Examples thereof include such as an identification test using an automatic device, a genetic test, a sensitivity test by a microliquid dilution method, a sensitivity test by a disk method, and a rapid sensitivity test by a microscopic image, laser scattered light measurement or the like.
Embodiment 1: Summary
[0047] In Embodiment 1, the sample after destroying the blood cells is filtered by the filtration filter, and the estimated blood bacterial concentration is calculated by referring to the correspondence data between the color component of the image of the impurities remaining on the filter and the actual blood bacterial concentration. This makes it possible to create a sample having a desired bacterial concentration without performing isolation and cultivation. Therefore, the isolation and cultivation step that usually requires about one whole day can be shortened to, for example, about 30 minutes.
Embodiment 2
[0048] In Embodiment 2, an automatic analyzer for obtaining a sample having a bacterial concentration adjusted to a desired value from a blood sample containing bacteria is shown. Note that the present embodiment is merely an example, and is not limited to this configuration.
[0049]
[0050] The sample into which the surfactant is introduced is introduced into a centrifugal separator 102. The blood cells in the sample are destroyed by the surfactant. The centrifugal separator 102 separates the eluted hemoglobin and the like from bacteria, blood cells that could not be destroyed, and the like. As a result, the separation step of S11 is performed.
[0051] The sample that has been centrifuged is introduced into a cleaning unit 103. The cleaning unit 103 removes the supernatant of the sample, and cleans the sample with, for example, about 1 mL of physiological saline or pure water, or a cleaning liquid such as a medium. A cleaning pipette 104 aspirates the supernatant. A portion from the bottom of the sample container to a certain reference height may be treated as the supernatant. As a result, the rest of S11 is performed. More strictly, it is preferable to provide a liquid position sensor or the like, detect an interface between a portion where bacteria and blood cells are coagulated into a pellet form and a liquid portion, and treat a portion up to the vicinity of the interface position as the supernatant.
[0052] The cleaned sample is introduced into a filtration filter unit 105. The filtration filter unit 105 consists of, for example, a disposal filtration filter, a syringe for capturing impurities in the filter, and the like. S12 is performed by the filtration filter unit 105. In some cases, the sample may be filtered using the centrifugal separator 102.
[0053] A camera 106 (corresponding to a sensor that detects the amount of impurities) images impurities remaining on the filtration filter unit 105. A storage unit 107 stores the correspondence data described in
[0054] The filtered sample is introduced into a dilution unit 108. The dilution unit 108 adjusts the dilution ratio so as to obtain a desired bacterial concentration on the basis of the blood bacterial concentration estimated by the computer 110. A dilution pipette 109 introduces the diluent according to its dilution ratio. Accordingly, S52 is performed.
[0055] The computer 110 automatically performs the above steps by controlling each unit included in the automatic analyzer 100. It is preferred that the computer 110 includes an input/output device and the operator can instruct the computer 110 about the type of bacteria, the desired bacterial concentration, and the like. The computer 110 can change the correspondence data to be referred according to the input bacteria type, and can also change the dilution ratio by the dilution unit 108 according to the desired bacterial concentration. The blood bacterial concentration value estimated by the computer 110 may be output to an output device such as a display, and when the blood bacterial concentration value is equal to or less than the desired bacterial concentration, a flag indicating a defective specimen may be displayed (S53).
[0056] The automatic analyzer 100 may include a sensitivity test device 111 in addition to the above configuration. The computer 110 automatically performs the sensitivity test by controlling the sensitivity test device 111. As a result, all processes from S10 to S54 can be automatically performed. As the contents of the sensitivity test, in addition to those described in Embodiment 1, the minimum inhibitory concentration and the like described in Examples described later can also be measured.
Embodiment 3
[0057] It is considered that the method for adjusting the blood bacterial concentration in the blood sample described in Embodiments 1 to 2 is influenced to some extent by the amount of red blood cells contained in the original blood. The concentration of human red blood cells varies depending on sex and health condition, but is about 3×10.sup.9 to 6×10.sup.9/mL, and the variation is extremely small as compared with a bacterial concentration range of 10.sup.6 to 10.sup.10/mL. Therefore, it is considered that the influence on the result of the estimated blood bacterial concentration is small. However, in a case where another detection result of the amount of impurities such as the red blood cell concentration or the hematocrit value is obtained in advance by another blood cell analysis or the like, the result of step S51 can be corrected using the value. As a result, the blood bacterial concentration estimated more accurately can be calculated. As the correction procedure, for example, the following ones are conceivable.
(Correction procedure 1) When the blood bacterial concentration estimated by the operator or the computer 110 performing the procedure of
(Correction procedure 2) The operator or the computer 110 performs the procedure of
[0058] In the correction procedure, the correspondence data is referred using another detection result obtained by measuring the amount of impurities. Therefore, the correspondence data needs to describe correspondence between the amount of impurities and the actual blood bacterial concentration. For example, the saturation value of the filter image and the amount of impurities corresponding thereto can be described together in the correspondence data, or a conversion formula between the saturation value and the amount of impurities can be defined in advance, and another detection result can be converted into the saturation value using the conversion formula. That is, the correspondence data may describe correspondence between a value representing the amount of impurities remaining on the filter in some form and the actual blood bacterial concentration in the blood sample.
[0059] In Embodiments 1 to 2, the saturation value of the filter image is used to detect red blood cells remaining in the filter. Instead of the camera 106, an optical sensor that detects absorption or reflection of a specific wavelength corresponding to red can also be used. That is, by using an optical sensor capable of detecting at least the largest RGB component of impurities remaining on the filter, information similar to the saturation value of the image captured by the camera 106 can be obtained. In this case, the correspondence data also needs to describe a numerical value measured by the optical sensor instead of the saturation value. Alternatively, a person may visually measure the amount of impurities based on a color sample, and refer to the correspondence data based on the measurement result. Furthermore, the color sample itself may describe the correspondence between the color of the impurities and the blood bacterial concentration.
EXAMPLE 1
[0060] In Example 1 of the present invention, the superiority of the pretreatment method according to the present invention will be described together with a comparative example. In Example 1, comparison was made between concentration adjustment using turbidity measurement and concentration adjustment according to the present invention, respectively adjusting the recommended bacterial concentration range of the sensitivity test. In the case of turbidity measurement, absorbance measurement at a wavelength of 600 nm was used. In the case of concentration adjustment according to the present invention, the pretreatment method shown in
[0061]
[0062] When the bacterial concentration in the blood sample is 10.sup.8 CFU/mL or more, it is possible to adjust the bacterial concentration to the vicinity of a desired concentration range, but when the blood bacterial concentration in the blood sample is 10.sup.6 to 10.sup.7 CFU/mL, the number of bacteria after the adjustment is reduced by 1 to 2 digits. This is because hemoglobin that could not be removed in steps S11 and S12, fine particles contained in the medium and the like contribute to an increase in scattered light, so that the value of turbidity increases even though the bacterial concentration is low. Therefore, since the bacterial concentration is estimated excessively, it is difficult to adjust the bacterial concentration by using turbidity measurement. This is also apparent from the fact that the plot of
[0063]
EXAMPLE 2
[0064] Example 2 of the present invention shows an example in which bacterial concentration was adjusted from a blood culture positive sample by the pretreatment method according to the present invention using E. coli. As a comparative example, a growth rate in the case of preparing bacterial suspension from colonies by isolation and cultivation for a whole day is used. The bacterial concentration in a blood culture-positive sample was adjusted to a final bacterial concentration of 5×10.sup.5 CFU/mL using three different bacterial concentrations up to 10.sup.7 to 10.sup.9 CFU/mL. Even when bacterial suspension was prepared from colonies, the bacterial suspension was adjusted using turbidity measurement so that the final bacterial concentration was 5×10.sup.5 CFU/mL. 50 μL of the sample was dispensed into a 96-well plate, and 50 μL of Mueller-Hinton medium adjusted to twice the concentration was also dispensed. Thereafter, the 96-well plate was placed in an incubator at 35 to 37° C., and the state of growth was observed with a bright field microscope. Regarding the growth rate, a temporal change in the growth rate was calculated using the area of a region determined to be a bacterium in a microscopic image as an index of the growth rate.
[0065]
EXAMPLE 3
[0066] In Example 3 of the present invention, the results when E. coli in Example 2 was changed to S. aureus will be described.
[0067]
EXAMPLE 4
[0068] Example 4 of the present invention shows a result of performing a drug sensitivity test on both blood culture positive samples and a sample created from colonies. In the sensitivity test, the lowest concentration (Minimum Inhibitory Concentration: MIC) among the concentrations at which the drug exerts an antibacterial action on bacteria is measured. Here, a microliquid dilution method was used for the sensitivity test. The bacterial suspension and different concentrations of the drug were mixed, and the MIC was determined by visually determining turbidity of each well of the cultured 96-well plate after 18 hours.
[0069]
[0070] In any case, the MIC in the case of pretreating the blood culture sample falls within the range of ±1 tube (twice or half) of the MIC in the case of the sample created from the colonies, indicating that the sensitivity test can be correctly performed even from the sample obtained by pretreating the blood culture sample.
[0071]
Regarding Modification Example of Present Invention
[0072] In the above embodiment, it was described that the correspondence data is referred using the average value of the saturation values of the filter region 20, but a maximum value or a mode value may be used instead of the average value. Alternatively, instead of the saturation value, the amount of impurities remaining on the filter may be represented by a feature amount represented by at least two of hue, lightness, and saturation.
[0073] In the above embodiment, an example in which blood cells contained in the blood sample are detected as impurities has been described, but the present invention can also be used for other bacterial samples. That is, the present invention can be used for a sample having correspondence between image information obtained by imaging the impurities remaining on the filter and the bacterial concentration in the sample. The substance added to destroy the impurities may be appropriately changed depending on the type of impurities.
REFERENCE SIGNS LIST
[0074] 100 automatic analyzer [0075] 101 introduction device [0076] 102 centrifugal separator [0077] 103 cleaning unit [0078] 104 cleaning pipette [0079] 105 filtration filter unit [0080] 106 camera [0081] 107 storage unit [0082] 108 dilution unit [0083] 109 dilution pipette [0084] 110 computer