Method of designing a pulse sequence for parallel-transmission MRI, and a method of performing parallel-transmission MRI using such a pulse sequence
11262427 · 2022-03-01
Assignee
Inventors
- Vincent Gras (Gif sur Yvette, FR)
- Nicolas Boulant (Gif sur Yvette, FR)
- Michel Luong (Gif sur Yvette, FR)
- Alexis Amadon (Gif sur Yvette, FR)
Cpc classification
G01R33/546
PHYSICS
G01R33/5612
PHYSICS
G01R33/5659
PHYSICS
International classification
G01R33/54
PHYSICS
Abstract
A method of designing a pulse sequence for parallel-transmission MRI includes a) for each one of a plurality of subjects, estimating a linear adjustment transformation (L), converting amplitude maps of RF fields generated by respective transmit channels of a MRI apparatus into respective standardized maps; and b) determining RF waveforms (P) minimizing a discrepancy between subject-specific distributions of flip-angles of nuclear spin and a target distribution, averaged over said subjects, the subject-specific distributions corresponding to the flip-angle distributions achieved by applying a superposition of RF fields, each having a temporal profile described by one of said RF waveforms and a spatial amplitude distribution described by a respective standardized map determined for the subject. A method and an apparatus for performing parallel-transmission MRI using such a pulse sequence are provided.
Claims
1. A computer-implemented method of designing a pulse sequence (P) for parallel-transmission magnetic resonance imaging, said pulse sequence comprising at least a magnetic field gradient waveform (H) and a set of radio-frequency waveforms (U), each radio-frequency waveform of said set being associated to a respective transmit channel (RFC1-RFC8) of a parallel-transmission magnetic resonance imaging apparatus, the method comprising: a) for each one of a plurality of magnetic resonance imaging subjects, estimating a linear transformation, called adjustment transformation (L), converting amplitude maps (Ω.sub.1.sup.(1)-Ω.sub.1.sup.(1)) of radio-frequency fields generated within a region of interest comprising a body part of the subject by respective transmit channels of the magnetic resonance imaging apparatus into respective standardized maps, the adjustment transformation being chosen in such a way as to minimize a first cost function representative of an averaged difference between the standardized maps for the subject and respective reference amplitude maps for a reference subject; and b) determining at least said radio-frequency waveforms (U) in such a way as to minimize a second cost function representative of a discrepancy between subject-specific distributions of flip-angles of nuclear spin and a target distribution, averaged over said plurality of magnetic resonance imaging subjects, the subject-specific distributions corresponding to the flip-angle distributions achieved by applying a magnetic field gradient waveform and a superposition of radio-frequency fields, each of said radio-frequency fields having a temporal profile described by one of said radio-frequency waveforms and a spatial amplitude distribution described by a respective standardized map determined for the subject.
2. The method of claim 1, wherein step b) further comprising determining said magnetic field gradient waveform (H) so as to minimize said second cost function.
3. The method of claim 1, further comprising a preliminary step of acquiring all or some of said amplitude maps using the magnetic resonance imaging apparatus, the acquired amplitude maps being used for estimating the adjustment transformation.
4. The method of claim 1, further comprising a preliminary step of computing all or some of said amplitude maps by performing an electromagnetic simulation using a computer, the simulated amplitude maps being used for estimating the adjustment transformation.
5. The method of claim 1, further comprising a preliminary step of measuring a noise covariance matrix for a plurality of receive channels of the parallel-transmission magnetic resonance imaging apparatus, the measured noise covariance matrix being used for estimating the adjustment transformation.
6. The method of claim 1, wherein step a) further comprises computing second-order statistics of the standardized maps and step b) comprises determining at least said radio-frequency waveforms from said second-order statistics.
7. The method of claim 1, wherein the target distribution is homogeneous over a region of interest.
8. A method of performing parallel-transmission magnetic resonance imaging of a subject using a parallel-transmission magnetic resonance imaging apparatus comprising a set of gradient coils (GC), a plurality of transmit channels (RFC1-RFC8) and a plurality of receive channels, the method comprising the steps of: i) using the receive channels of the apparatus for performing measurements representative of spatial distributions of radio-frequency fields generated by respective transmit channels within a region of interest comprising a body part of the subject; ii) using results of said measurements, estimating a linear transformation (L), called adjustment transformation, converting amplitude maps of radio-frequency fields generated within the region of interest by respective transmit channels of the magnetic resonance imaging apparatus into respective standardized maps, the adjustment transformation being chosen in such a way as to minimize a cost function representative of an averaged difference between the standardized maps for the subject and respective reference amplitude maps for a reference subject; iii) inverting the adjustment transformation, and computing a set of subject-specific radio-frequency waveforms (P′) by applying the inverted adjustment transformation to a set of predetermined reference radio-frequency waveforms; and iv) applying each subject-specific radio-frequency waveform to a respective transmit channel while applying a magnetic field gradient waveform to the gradient coils, and using the receive channels to receive parallel-transmission magnetic resonance imaging signals, wherein said set of predetermined reference radio-frequency waveforms has been obtained using a method according to claim 1.
9. A method of performing parallel-transmission magnetic resonance imaging of a subject using a parallel-transmission magnetic resonance imaging apparatus comprising a set of gradient coils (GC), a plurality of transmit channels (RFC1-RFC8) and a plurality of receive channels, the method comprising the steps of: i) using the receive channels of the apparatus for performing measurements representative of spatial distributions of radio-frequency fields generated by respective transmit channels within a region of interest comprising a body part of the subject; ii) using results of said measurements, estimating a linear transformation (L), called adjustment transformation, converting amplitude maps of radio-frequency fields generated within the region of interest by respective transmit channels of the magnetic resonance imaging apparatus into respective standardized maps, the adjustment transformation being chosen in such a way as to minimize a cost function representative of an averaged difference between the standardized maps for the subject and respective reference amplitude maps for a reference subject; iii) inverting the adjustment transformation, and computing a set of subject-specific radio-frequency waveforms (P′) by applying the inverted adjustment transformation to a set of predetermined reference radio-frequency waveforms; and iv) applying each subject-specific radio-frequency waveform to a respective transmit channel while applying a magnetic field gradient waveform to the gradient coils, and using the receive channels to receive parallel-transmission magnetic resonance imaging signals.
10. The method of claim 9, wherein step i) comprises acquiring amplitude maps of said radio-frequency fields with a lower spatial resolution than that of the receive parallel-transmission magnetic resonance imaging signals acquired during step iv).
11. The method of claim 9, wherein step i) comprises measuring a noise covariance matrix for said receive channels.
12. A parallel-transmission magnetic resonance imaging apparatus comprising a set of gradient coils (GC), a plurality of transmit channels (RFC1-RFC8), a plurality of receive channels and a data processor (CP), wherein: it further comprises a memory device (DB) storing data defining a set of predetermined reference radio-frequency waveforms and a magnetic field gradient waveform; and in that the data processor is programmed or configured for: driving the receive channels to perform measurements representative of spatial distributions of radio-frequency fields generated by the respective transmit channels within a region of interest comprising a body part of the subject; using results of said measurements, estimating a linear transformation (L), called adjustment transformation, converting amplitude maps of radio-frequency fields generated within the region of interest by respective transmit channels into respective standardized maps, the adjustment transformation being chosen in such a way as to minimize a cost function representative of an averaged difference between the standardized maps for the subject and respective reference amplitude maps for a reference subject; inverting the adjustment transformation and computing a set of subject-specific radio-frequency waveforms by applying the inverted adjustment transformation to a set of predetermined reference radio-frequency waveforms; and driving the transmit channels to play respective subject-specific radio-frequency waveforms, the gradient coils to play a magnetic field gradient waveform and the receive coil to receive parallel-transmission magnetic resonance imaging signals.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) Additional features and advantages of the present invention will become apparent from the subsequent description, taken in conjunction with the accompanying drawings, which show:
(2)
(3)
(4)
(5)
(6)
(7)
(8)
DETAILED DESCRIPTION
(9) A parallel-transmission magnetic resonance imaging apparatus comprising an array of N.sub.c>1 RF coils (or resonators) implementing independently-driven transmit channels. The array is often cylindrical and encloses a region wherein a body part (e.g. the head) of a MRI subject can be introduced.
(10)
(11) Let B.sub.1,c.sup.+(r) (Tesla) denote the spatially dependent transmit RF magnetic field of the c.sup.th resonator of the transmit array and γ=42.57×10.sup.6 Hz/T the gyromagnetic ratio of the proton. The so-called control field components ω.sub.1,c=2πγB.sub.1,c.sup.+ (rad/s/V), 1≤c≤N.sub.c, may then be arranged in a vector ω.sub.1(r)=(ω.sub.1,1, . . . , ω.sub.1,N.sub..sup.N.sup.
(12) It is important to recall that the RF field spatial distribution is not only a function of the geometry of the array, but it is also affected by the presence of the body part and therefore depends on the MRI subject. The control field vector for a given realization—and therefore subject—can be measured using several known techniques, see e.g. [10].
(13) For a given realization of the control field ω.sub.1, corresponding to a particular MRI subject— designates the set of positions r where ω.sub.1(r) is known. As the control field distribution is typically obtained by MR (magnetic resonance) acquisitions, it is common in practice that
is limited in space (no MR signal in air, and existence of regions where the reconstruction of B.sub.1.sup.+ is not reliable).
(14) The control field distribution (ω.sub.1 can be conveniently represented as a N.sub.c×M complex matrix denoted by Ω.sub.1(
), where M
|
| is the number of positions contained in
. More precisely, Ω.sub.1.sup.(n)(
), with n=1 . . . N, represents the control field for the n.sup.th MRI subject. Ω.sub.1,ref designates a “reference control field”, defined as the control field distribution of one particular realization (i.e. for a particular MRI subject) taken as a reference.
(15) Measured control fields for N>1 (typically at least ten, and typically several tens) subjects, plus the reference subject, constitute the input data of a pulse design method according to one embodiment of the invention, as illustrated on
(16) In some embodiments of the invention, some or all of the control fields may be computed by performing full electromagnetic simulations taking into account the anatomy of real or virtual subjects.
(17) Let .sub.ref denote the region over which the reference control field is defined. Let us denote by L.sup.(n) the N.sub.c×N.sub.c complex matrix (adjustment transformation, or matrix) satisfying:
(18)
where ∥ ∥.sub.2 is the L.sub.2 norm. The meaning of equation (1) is that L.sup.(n) approximately transforms the control field distribution for the n.sup.th subject into the reference control field in the space region wherein both fields are defined, the approximation being the best in the sense of least-square error minimization. Other cost functions may be used as a criterion for defining the “optimal” transformation, but the mean-square error is particularly expedient from a mathematical point of view. Indeed, the solution of equation (1) is simply obtained by right-multiplying Ω.sub.1 with the Moore-Penrose pseudo-inverse of Ω.sub.1,ref(∩
.sub.ref), denoted by (Ω.sub.1,ref(
∩
.sub.ref)).sup.†:
L.sup.(n)=Ω.sub.1.sup.(n)(∩
.sub.ref)(Ω.sub.1,ref(
∩
.sub.ref).sup.† (2)
(19) The adjustment transformations allow defining the Ω.sub.1,ref-standardized control field (or simply “standardized fields”) as:
{tilde over (ω)}.sub.1.sup.(n)(r)=(L.sup.(n)).sup.−1ω.sub.1.sup.(n)(r). (3)
(20) It will be assumed that both the control fields and the standardized control fields are random variables following Gaussian laws defined by their second-order statistics: ω.sub.1(r)˜N(μ(r), C(r)) and {tilde over (ω)}.sub.1(r)˜N({tilde over (μ)}(r), {tilde over (C)}(r))—the .sup.(n) apex are omitted when this is possible without inducing ambiguity. If the number N of subjects (excluding the reference subject) is much larger than N.sub.c (by at least a factor of ten), the second-order statistics of the control fields can be computed as follows (where “*” represents Hermitian conjugation):
(21)
(22) Analogous formulas allow computing the second order statistics of the standardized control fields (“standardized control statistics”).
(23) If N is not large enough, the Ledoit-Wolf estimation may be used for the covariance matrix.
(24) The set of standardized control fields—or simply the corresponding standardized control statistics—are then used to perform statistically robust design (SRD) of pulse sequences (the simpler term “pulse” will also be used) in accordance to a target control function f also provided as an input to the design method.
(25) Before describing a specific SRD approach, it is useful to recall some fundamental theoretical results.
(26) A spin excitation pulse sequence (or simply “pulse”) is comprised of a set of time-discretized radiofrequency (RF) waveforms U(t)∈.sup.1×N.sup.
.sup.1×3 (T/m). The duration of these waveforms is denoted by T. In the following, we will also make use of the MFG waveform multiplied by the gyromagnetic ratio of the proton:
H(t)=2πγG(t) (6)
(27) For simplicity, the pulse P, which is given by the definition of the RF and MFG waveforms U and H is denoted by:
P=U⊙H. (7)
(28) Neglecting relaxation and off-resonances during the excitation (this supposes that T<<T.sub.1,2 and off-resonance
(29)
the equation governing the evolution of the magnetization M∈.sup.3 (equilibrium magnetization (0 0 M.sub.0).sup.t) during the application of the pulse is given by Bloch's equation:
(30)
where ((z) and ℑ(z) denote the real and imaginary part of z, respectively):
(31)
(32) The mapping (r,t)A.sub.P,ω.sub.
(33) Given a pulse P and a control field distribution, ω.sub.1, one may solve (at least numerically) Bloch's equation and express the magnetization at time T as:
(34)
(35) Where Ā(r) is of the form:
(36)
(37) The pulse design engineering problem, conversely, consists in setting a condition on the desired control target of the form:
(38)
(39) In MRI, as the condition, generally, cannot be met perfectly for all positions simultaneously, this problem is usually solved by minimizing a metric of the form:
(40)
where .sub.design denote a region of interest (e.g. corresponding to the brain), any point outside this region being ignored in this performance metric.
(41) When the control field ω.sub.1(r) is stochastic, then Ā.sub.P,ω.sub.
Δ(P,θ)=min{Δ≥0;Π.sub.P(Δ,r)≤θ∀r∈.sub.design} (14)
where Π.sub.P(Δ, r) denotes the probability that |f(r, e.sup.Ā.sup.
(42) The optimization problem (14) becomes then:
(43)
(44) In practice the computation of Δ(P, θ) is difficult, therefore problem (14) is simplified into a more tractable optimization problem whose optimum is assumed to be close to the optimum of the above problem, see e.g. (14), (15).
(45) One such pulse engineering problem is given by the equation:
(46)
(47) As we have assumed that the statistical distribution of the control field ω.sub.1(r) is Gaussian with mean value μ(r) and covariance C(r), for all positions r, the term FA.sub.P(r)−FA.sub.t
.sup.2 in Eq. 17 is a function of μ(r) and C(r). Thus, an interesting feature of equation (17) is that the optimization does not need full knowledge of the control fields, but only its second-order statistics, as illustrated on
(48) Typically, the desired control target function f represents a target distribution of flip angles of nuclear spins, FA.sub.t. Most often, but not always, this target distribution corresponds to a constant flip angle over a region of interest (e.g. a subject's brain).
(49) The flip angle distribution FA.sub.P,ω.sub.
(50)
(51) In other words, the local performance metric
(52)
(see Equation 12) here takes the form:
f(r,e.sup.Ā.sup.
(53) For simplicity, here, neither constraints on the energy of the pulse nor on the MFG slew rate are taken into account here. However these constraints can be added explicitly to the pulse engineering problem by replacing the pulse engineering problem of Eq. (16) with the constrained optimization problem:
(54)
(55) Where Γ(P)∈.sup.N.sup.
(56) It should be understood that equation (16) is only one example of a “relaxed” optimization problem. Different forms of the problem, or even the true SRD optimization problem (16), can be applied to different embodiments of the invention, and in some cases deeper knowledge of the control fields will be required.
(57) Moreover, according to different embodiments of the invention, both the RF waveform U and the gradient waveform H can be optimized, or only the RF waveform, the gradient waveform being predefined.
(58) An essential feature of the invention, distinguishing it from the prior art, comes from the observation that statistically robust pulse design can be carried out using the standardized control fields {tilde over (ω)}.sub.1.sup.(n)(r) (or their second-order statistics) rather than the “physical” fields ω.sub.1.sup.(n)(r). In the example of the relaxed form of the SRD optimization problem (16), this is equivalent to replacing
(59)
with
(60)
The result of such design is called a “standardized” pulse P=U⊙H.
(61) Directly exposing a MRI subject to a standardized pulse would not provide the expected result, i.e. a spin flip angle distribution approximately matching the target. However let us consider, for a subject whose adjustment matrix is “L”, a modified spin excitation pulse P′=U′⊙H such that:
P′=(UL.sup.−1)⊙HP/L (20).
(62) Otherwise stated, the RF component of P′ is modified by being right-multiplied by the inverse adjustment matrix for the subject.
(63) It can be observed that:
U′ω.sub.1=(UL.sup.−1)(L{tilde over (ω)}.sub.1)=U{tilde over (ω)}.sub.1 (21)
(64) And therefore:
(65)
i.e., that the action of P′ on ω.sub.1 equals the action of P on the standardized field {tilde over (ω)}.sub.1. The modified pulse, computed from the standardized pulse and the subject-specific (inverse) adjustment matrix, does then provide the expected result, i.e. a spin flip angle distribution approximately matching the target.
(66) In order to perform spin-excitation on a subject it is then necessary to compute an estimator {circumflex over (L)} of its adjustment matrix, and then to apply the inverse of the estimated adjustment matrix to the standardized pulse (rather, to its RF component), to obtain a modified pulse, specific to the subject and fit for the purpose defined during the standardized pulse design phase. This is illustrated on
(67)
is equivalent to UL.sup.−1.
(68) As discussed above, given that the least-squares problem given by Eq. 1 is largely overdetermined, the estimator L can be satisfactorily estimated from a subsampled control field Ω.sub.1(F(), i.e:
{circumflex over (L)}=Ω.sub.1(F()∩
.sub.ref)Ω.sub.1,ref(F(
)∩
.sub.ref).sup.† (23)
where F is a subsampling operator which removes positions of . Therefore, the computation of {circumflex over (L)} is much more efficient than the computation of a subject-specific optimal pulse.
(69) The advantages provided by the invention will now be discussed with the help of a specific numerical example, illustrated by
(70) MRI data were obtained on a parallel transmit enabled whole body Siemens 7 T system (Siemens Healthineers, Erlangen, Germany) equipped with an SC72 whole body gradient insert (200 mT/m/ms and 70 mT/m maximum gradient slew rate and maximum gradient amplitude). The parallel transmission system consisted of eight transmitters (1 kW peak power per channel). Measurements were made with the 8 Tx-32Rx Nova head coil (Nova Medical, Wilmington, Mass., USA). The data consist of a collection of N=36 B.sub.1.sup.+ maps measured on different adult subjects (age=40±20 years).
(71) The protocol used to reconstruct the B.sub.1.sup.+ maps was a multi-slice interferometric turbo-FLASH acquisition ([13]-[15]) 5 mm isotropic resolution, matrix size 40×64×40, TR=20 s, TA=4 min 40 s).
(72) In
(73) P←A and R.fwdarw.L identify the antero-posterior and the right-left directions of the subjects.
(74)
(75) As explained above, the adjustment matrices for the subjects may be computed using a reduced set of data. A particularly suitable choice for the subsampling operator F of equation (23) is the operator that selects a subset of the ensemble of acquired slices (N.sub.s denoting the number of acquired slices). For 1≤m≤N.sub.s, F.sub.n denotes the operation consisting in retaining m evenly distributed slices across the optimization region (in this example, the volume of the brain) and L.sub.m=L.sub.F.sub.
(76) On
(77) The difference in magnitude between the two adjustment matrices, |L.sub.3−L.sub.40| is shown in
(78)
(79) Universal k.sub.T-point pulses ([6]) for the Nova TX array where designed by following the SRD approach described above, optimized to create uniform 10° flip angle excitation across the brain. For that purpose, the design region, .sub.design, was defined as:
(80)
where .sub.b.sup.(n) denotes the brain region for subject #n and
(⋅) is the characteristic function of
.sub.b.sup.(n).
(81) For the design, the spins were assumed to be on-resonant (ω.sub.0=0) everywhere across the head. The optimization was made on the flip angle (measuring by how much a magnetization initially along z is tipped from the z axis) distribution FA.sub.P,{tilde over (ω)}.sub.
(82) For simplicity, here, no constraint on the energy of the pulse nor on the MFG slew rate was taken into account. However, once the solution of the problem is determined, by possibly increasing the sub-pulse and MFG blip duration, the solution can be adapted to satisfy all hardware (peak RF power, average RF power or MFG slew rate limitations) or safety (specific absorption rate) constraints. In this numerical application, the number of kT-points was set to 5, and their position in the k-space determined by the SRD approach described above.
(83) Statistical robust solutions were computed numerically with the natural (μ, C) and the reduced ({tilde over (μ)}, {tilde over (C)}) control field statistics as input statistics using Equation (16) (“relaxed” SRD). The solution computed using the second-order statistics (μ, C) of the natural fields will be called in the following “Universal Pulse” UP, as it corresponds to the method disclosed in [7]. The solution computed using the second-order statistics ({tilde over (μ)}, {tilde over (C)}) of the standardized fields will be called in the following “Standardized Universal Pulses” SUP.
(84) For every subject, subject-tailored (ST) pulses were also computed, using the same parameterization as for the UP and SUP. The cost function to minimize was:
(85)
(86) Where we recall that ω.sub.1.sup.(n) denotes the subject-specific control field distribution for subject #n.
(87) The subject-tailored solution obtained from m slices is denoted by P.sub.ST.sub.
(88) The performance analysis of the UP, SUP consisted in simulating for every subject (36 simulations) the flip angle distribution and computing the Normalized Root Mean Square (NRMS) deviation of the latter from the target, referred below to as the flip angle NRMS control error (FA-NRMSE). Here, for every realization of the control field (i.e., every subject), 5 pulses were tested the four pulses: i) P.sub.UP, ii) P.sub.SUP/L.sub.40, iii) P.sub.SUP/L.sub.3, iv) P.sub.ST, and v) P.sub.ST.sub.
(89) The result of the FA-NRMSE analysis is presented in P.sub.SUP/L.sub.40) or an adjustment of the SUP with only 3 slices (P.sub.SUP
P.sub.SUP/L.sub.3) are seen to yield very comparable performances in terms of FA-NRMSE (on average across subject 5.5% and 5.7% respectively), confirming the analysis reported in
(90) In conclusion, the inventive method (SUP pulses) provides better uniformity than the Universal Pulse (UP) approach, while requiring a rather simple calibration (e.g. only using three-slice MRI) for determining the subject-specific adjustment transformations. Subject-tailored (ST) pulses achieve even better uniformity, but they require a much heavier calibration (trying to reduce the complexity of the calibration step, as it was done in the ST.sup.3 example, yields inacceptable results).
(91) The calibration step may be further simplified by deriving the inverse adjustment transformation for the user from measurements other than MR acquisitions. For instance, the measured noise covariance matrix for a plurality of receive channels of the MRI scanner is influenced by the subject body part in the scanner. A machine-learning algorithm may then be used to estimate the inverse adjustment matrix from noise measurements. Several different kind of measurements (e.g. MR and noise) may also be combined.
(92) Biometric and/or anagraphical data of the user (e.g. size of the head, sex, age . . . ) may also be taken into account, combined with measurements, for estimating the adjustment transformations.
(93)
(94) The computer also drives the gradient coils GC to generate gradient waveforms. The (inhomogeneous) RF field B1+ is generated by the RF coil elements; the ensemble formed by the RF coil elements is sometimes called a (RF) coil or array.
(95) According to the invention, the complex envelopes of a “standardized” pulse sequences, comprising one RF waveform for each transmission channel of the scanner and gradient waveforms is stored in a memory device to which computer CP has access. Moreover, computer CP is programmed to drive the scanner to perform measurements representative of spatial distributions of radio-frequency fields generated by the RF array; use the results of said measurements for estimating a subject-specific adjustment matrix, apply said adjustment matrix (or, rather, its inverse) to the standardized pulse to compute a subject-specific modified pulse and drive the RF and gradient coils to play the waveforms of the modified pulse.
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