Methods for detecting 1,25-dihydroxyvitamin D and related antibodies
11261257 · 2022-03-01
Assignee
Inventors
- Joshua Soldo (Prior Lake, MN, US)
- Gregory Olson (Lakeland, MN, US)
- Michael Lutterman (New Brighton, MN, US)
- John Wall (Woodbury, MN, US)
- Michael New (Bloomington, MN, US)
- Hector Floyd Deluca (Deerfield, WI, US)
- Fabrizio Bonelli (Alessandria, IT)
Cpc classification
C07K2319/40
CHEMISTRY; METALLURGY
C07K2317/32
CHEMISTRY; METALLURGY
C07K14/70567
CHEMISTRY; METALLURGY
C07K16/26
CHEMISTRY; METALLURGY
International classification
C07K16/28
CHEMISTRY; METALLURGY
Abstract
There is disclosed an assay method for selectively detecting 1,25-dihydroxy-vitamin D in a biological fluid sample. According to the method, the pH of the test sample is adjusted to 6-9 and a receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) is added to the test sample, thereby obtaining the formation of a VDR-LBD/1,25-dihydroxyvitamin D complex in which the VDR-LBD portion is conformationally changed with respect to unbound VDR-LBD. The VDR-LBD/1,25-dihydroxyvitamin D complex is then detected by means of a capture moiety which is capable of specifically binding to VDR-LBD bound to 1,25-dihydroxyvitamin D. Also disclosed are an assay kit and an antibody for carrying out the method. The assay is preferably a sandwich immunoassay.
Claims
1. A capture moiety that is capable of specifically binding the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) bound to 1,25-dihydroxy-vitamin D or analog thereof without cross-reacting with uncomplexed VDR-LBD, wherein said capture moiety comprises a monoclonal antibody or a fragment of a monoclonal antibody that comprises: (A) heavy chain CDR1, CDR2, and CDR3 domains whose amino acid sequences are respectively the amino acid sequences of SEQ ID NOs: 1, 2 and 3; and (B) light chain CDR1, CDR2, and CDR3 domains whose amino acid sequences are respectively the amino acid sequences of SEQ ID NOs: 4, 5 and 6.
2. The capture moiety of claim 1, wherein said capture moiety comprises a F(ab), Fab′, F(ab′).sub.2, or F(v) fragment of an antibody.
3. The capture moiety of claim 1, wherein said capture moiety comprises a single polypeptide chain that comprises said heavy chain CDR1, CDR2, and CDR3 domains and said light chain CDR1, CDR2, and CDR3 domains.
4. The capture moiety of claim 3, wherein said capture moiety is an scFv single chain antibody.
5. The capture moiety of claim 1, wherein said capture moiety comprises: (A) a heavy chain variable domain that comprises the amino acid sequence of SEQ ID NO: 7; and (B) a light chain variable domain that comprises the amino acid sequence of SEQ ID NO: 9.
6. The capture moiety of claim 5, wherein said capture moiety is immobilized on a solid support.
7. The capture moiety of claim 6, wherein said solid support is a bead, particle, plate, cuvette, lateral flow device, or flow cell.
8. The capture moiety of claim 6, wherein said solid support is a paramagnetic particle.
9. The capture moiety of claim 1, wherein said capture moiety is immobilized on a solid support.
10. The capture moiety of claim 9, wherein said solid support is a bead, particle, plate, cuvette, lateral flow device, or flow cell.
11. The capture moiety of claim 9, wherein said solid support is a paramagnetic particle.
12. A kit for detecting 1,25-dihydroxyvitamin D (1,25(OH).sub.2D) or an analogue thereof selected from one or more of the group consisting of 19-nor-1α-25-dihydroxyvitamin D.sub.2, 1α-hydroxyvitamin D.sub.2, 1α-hydroxyergocalciferol and 2-methylene-19-nor-(20S)-1α,25-(OH).sub.2D.sub.3, in a biological fluid sample, wherein said kit comprises: (i) a receptor protein comprising the Ligand Binding Domain of the Rattus norvegicus Vitamin D Receptor (VDR-LBD); (ii) a capture moiety, wherein said capture moiety comprises a monoclonal antibody or a fragment of a monoclonal antibody, wherein said monoclonal antibody and said monoclonal antibody fragment comprise: heavy chain CDR1, CDR2, and CDR3 domains whose amino acid sequences are respectively the amino acid sequences of SEQ ID NOs: 1, 2 and 3; and light chain CDR1, CDR2, and CDR3 domains whose amino acid sequences are respectively the amino acid sequences of SEQ ID NOs: 4, 5 and 6; and (iii) a binding buffer which has a pH comprised between 6 and 9; and (iv) a solid support to which said capture moiety can be passively or covalently bound.
13. The kit of claim 12, wherein said capture moiety comprises a F(ab), Fab′, F(ab′).sub.2, or F(v) fragment of an antibody.
14. The kit of claim 12, wherein said capture moiety comprises a single polypeptide chain that comprises said heavy chain CDR1, CDR2, and CDR3 domains and said light chain CDR1, CDR2, and CDR3 domains.
15. The kit of claim 14, wherein said capture moiety is an scFv single chain antibody.
16. The kit of claim 12, wherein said capture moiety comprises: (A) a heavy chain variable domain that comprises the amino acid sequence of SEQ ID NO: 7; and (B) a light chain variable domain that comprises the amino acid sequence of SEQ ID NO: 9.
17. The kit of claim 16, wherein said capture moiety is immobilized on a solid support.
18. The kit of claim 17, wherein said solid support is a bead, particle, plate, cuvette, lateral flow device, or flow cell.
19. The kit of claim 17, wherein said solid support is a paramagnetic particle.
20. The kit of claim 12, wherein said capture moiety is immobilized on a solid support.
21. The kit of claim 20, wherein said solid support is a bead, particle, plate, cuvette, lateral flow device, or flow cell.
22. The kit of claim 20, wherein said solid support is a paramagnetic particle.
Description
BRIEF DESCRIPTION OF THE FIGURES
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DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENT(S)
(8) As further illustrated in the examples below, the present invention is based on the finding that the pH of the medium in which the assay is performed significantly influence the binding affinity of vitamin D binding protein (DBP) and of the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) to 1,25(OH).sub.2D.
(9) More specifically, the results of experiments conducted by the present inventors clearly showed that a shift in the pH value of the test sample above 6, preferably above 7, surprisingly induces an increase of about 200-fold in the affinity of VDR-LBD for 1,25(OH).sub.2D over 25(OH)D, while at the same pH value DBP exhibits about 1000 fold greater affinity for 25(OH)D over 1,25(OH).sub.2D. The exploitation of such an advantageous effect of the pH on the equilibrium between 1,25(OH).sub.2D bound to DBP and 1,25(OH).sub.2D bound to VDR-LBD represents therefore a unique tool in terms of both ease and effectiveness for selectively capturing circulating 1,25(OH).sub.2D from natural DBP in the presence of a molar excess of VDR-LBD, while leaving at the same time the majority of 25(OH)D in a sequestered form bound to DBP. Such an approach is particularly advantageous over the prior art methods, which require time-consuming and labor intensive sample pre-treatment steps to allow the determination of 1,25(OH).sub.2D in clinical samples.
(10) Since the binding of 1,25(OH).sub.2D to VDR-LBD is known to induce a conformational change in the VDR-LBD molecule, the present inventors have conducted extensive experimentation to develop a capture moiety, such as an antibody, capable of specifically recognizing and binding to VDR-LBD bound to 1,25(OH).sub.2D without cross-reacting with uncomplexed VDR-LBD, in order to selectively discriminate the VDR-LBD/1,25(OH).sub.2D complex from unbound VDR-LBD in various biological matrices. Such conformation-specific capture moiety is particularly useful, since it represents an invaluable tool for the rapid and reliable detection of the circulating active form of vitamin D.
(11) Thus, one aspect of the present invention is a method for detecting 1,25(OH).sub.2D or analog thereof in a biological fluid sample, the method comprising the steps of: (i) adjusting the pH of the biological fluid sample to a value comprised between 6 and 9 and simultaneously or subsequently adding to the biological fluid sample a receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD), thereby obtaining binding of 1,25-dihydroxyvitamin D or analog thereof to the VDR-LBD of the receptor protein; (ii) capturing the receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) bound to 1,25-dihydroxyvitamin D or analog thereof by means of a capture moiety which is capable of specifically binding the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) bound to 1,25-dihydroxy-vitamin D or analog thereof without cross-reacting with uncomplexed VDR-LBD; and (iii) detecting the captured receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) bound to 1,25-dihydroxyvitamin D or analog thereof;
wherein said method is conducted as a sandwich assay, and
wherein said step (iii) of detecting the captured receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) bound to 1,25-dihydroxyvitamin D or analog thereof is carried out using a labeled anti-VDR-LBD detector antibody.
(12) Also within the scope of the invention is a kit for detecting 1,25(OH).sub.2D or an analog thereof in a biological fluid sample, the kit comprising the above-described receptor protein and capture moiety, as well as a binding buffer which has a pH comprised between 6 and 9. The kit may further comprise a solid support such as, without limitation, beads, microparticles, nanoparticles, super paramagnetic particles, a microtitre plate, a cuvette, a lateral flow device, a flow cell, or any surface to which a protein or peptide can be passively or covalently bound. Either the receptor protein or the capture moiety of the kit of the invention may be immobilized on the solid support. Further, the kit of the invention may contain detection means as described above in connection with the detection method.
(13) The term “vitamin D” as used in the present description refers both to vitamin D.sub.3 (cholecalciferol) and vitamin D.sub.2 (ergocalciferol), and the term “1,25(OH).sub.2D” refers to both 1,25(OH)D.sub.3 and 1,25(OH)D.sub.2. Analogues of 1,25(OH).sub.2D include modified versions and structural analogues thereof, such as for example 19-nor-1α-25-dihydroxyvitamin D.sub.2 (e.g. Zemplar or paricalcitol from Abbott), 1α-hydroxyvitamin D.sub.2 or 1α-hydroxyergocalciferol (e.g. Hectorol or doxercalciferol from Genzyme), and 2-methylene-19-nor-(20S)-1α,25-(OH).sub.2D.sub.3 (e.g. 2MD from Deltanoid Pharmaceuticals).
(14) As mentioned above, a characterizing feature of the detection method of the present invention is that the pH of the biological fluid sample under examination is adjusted to a value above 6, i.e. comprised between 6 and 9. Preferred pH values are comprised between 7 and 8.6, such as 7.2, 7.3, 7.4, 7.5, 7.6, 7.7, 7.8, 7.9, 8.0, 8.1, 8.2, 8.3, 8.4, 8.5 or 8.6. Buffering agents and buffer solutions suitable for adjusting the pH of a biological fluid sample to the above mentioned values are well known to those skilled in the art.
(15) In the context of the present invention, the biological fluid sample is preferably selected from the group consisting of whole blood, serum, plasma, and urine. The biological fluid sample may optionally include further components, such as for example: diluents, preservatives, stabilizing agents and/or buffers. If needed, dilutions of the biological fluid sample are prepared using any suitable diluent buffer known in the art.
(16) The detection method of the present invention is further characterized in that a receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) is employed in order to bind 1,25(OH).sub.2D or analog thereof.
(17) The term “receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD)” as used in the present description encompasses both the whole Vitamin D Receptor protein (VDR), which includes the C-terminal Ligand Binding Domain, and the Ligand Binding Domain (LBD) of Vitamin D Receptor in an isolated or engineered form.
(18) For example, the whole Vitamin D Receptor protein or the Ligand Binding Domain thereof is a recombinant protein generated by DNA technologies. Nucleotide sequences encoding Vitamin D Receptor from various animal species are available and characterized. Thus, the whole Vitamin D Receptor protein or the Ligand Binding Domain thereof used in the present invention as the receptor protein is, for example but without limitation, of mammalian origin (e.g., a human, mouse or rat protein), or of avian origin, or of amphibian origin; alternatively, it is a mutated variant of any of such proteins.
(19) Optionally, the whole Vitamin D Receptor protein or the Ligand Binding Domain thereof used as the receptor protein in the present invention further comprises or is coupled to an affinity tag, in order to substantially improve purification and/or detection procedures. Among the most common affinity tags, polyhistidine tags (“His-tag”) attached at the C-terminal or N-terminal of the protein of interest are routinely employed in protein sciences and their use within the context of the present invention is therefore well within the knowledge of the person skilled in the art. Expressed His-tagged proteins are easily purified e.g. on matrices containing transitional metal ions, and the use of anti-His-tag antibodies represents a useful and known tool in localization and immunoprecipitation studies.
(20) Therefore, in a preferred embodiment of the present invention, the whole Vitamin D Receptor protein or the Ligand Binding Domain thereof used as the receptor protein is a recombinant His-tagged fusion protein. However, other affinity tags such as, for example, Arg5, Strep-tag II, FLAG, fluorescein (FITC), Poly(A), Poly(dT) and biotin may be employed. Techniques for the production of epitope-tagged recombinant proteins are generally known in the art. In another preferred embodiment, the whole Vitamin D Receptor protein or the Ligand Binding Domain thereof used as the receptor protein is coupled to a chaperone protein or in general to any other protein which has a chaperone-like function, in order to help protein folding and/or improve stability. A receptor protein (i.e. the whole Vitamin D Receptor protein or the Ligand Binding Domain thereof, possibly coupled to an affinity tag or a chaperone or chaperone-like protein) bearing an amino acid sequence mutation aimed at improving stability may also be employed within the context of the invention.
(21) As mentioned above, the detection method of the present invention involves the use of a capture moiety capable of binding the VDR-LBD/1,25(OH).sub.2D complex by specifically recognizing the conformationally modified VDR-LBD bound to 1,25(OH).sub.2D or analog thereof, without cross-reacting with uncomplexed VDR-LBD.
(22) In a preferred embodiment, the capture moiety is an antibody that can be used in a method for detecting 1,25-dihydroxyvitamin D (1,25(OH).sub.2D) or analog thereof in a biological fluid sample, the method comprising the steps of: (i) adjusting the pH of the biological fluid sample to a value comprised between 6 and 9 and simultaneously or subsequently adding to the biological fluid sample a receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD), thereby obtaining binding of 1,25-dihydroxyvitamin D or analog thereof to the VDR-LBD of the receptor protein; (ii) capturing the receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) bound to 1,25-dihydroxyvitamin D or analog thereof by means of a capture moiety which is capable of specifically binding the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) bound to 1,25-dihydroxy-vitamin D or analog thereof without cross-reacting with uncomplexed VDR-LBD; and (iii) detecting the captured receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) bound to 1,25-dihydroxyvitamin D or analog thereof.
(23) Since an antibody having such a binding specificity has been made available for the first time by the present inventors, the antibody per se also falls within the scope of the present invention.
(24) Therefore, another aspect of the invention is an antibody which specifically binds the Ligand Binding Domain of Vitamin D Receptor of a complex formed between VDR-LBD and 1,25-dihydroxyvitamin D or an analog of 1,25-dihydroxyvitamin D without cross-reacting with uncomplexed VDR-LBD.
(25) Preferably, the antibody of the invention is a monoclonal antibody. As described in the examples, a number of hybridoma clones producing monoclonal antibodies which are able to specifically recognize and bind to the conformationally modified VDR-LBD bound to 1,25(OH).sub.2D without substantially cross-reacting with uncomplexed VDR-LBD, were produced by the present inventors. One of such hybridoma clones, designated as 11B4H11H10, produces a monoclonal antibody which was fully characterized by sequencing, in order to identify the nucleic acid and amino acid sequences of its heavy and light chain variable domains. The CDRs (CDR1, CDR2 and CDR3) of both the heavy and light chain variable domains were also identified.
(26) Such nucleic and amino acid sequences are illustrated in the Sequence Listing, which forms an integral part of the description; in the Sequence Listing, the amino acid and nucleic acid sequences of the heavy chain variable domain of 11B4H11H10 are designated as SEQ ID NO:7 and SEQ ID NO:8, respectively; the amino acid and nucleic acid sequences of the light chain variable domain of 11B4H11H10 are designated as SEQ ID NO:9 and SEQ ID NO:10, respectively; the CDRs of the heavy chain variable domain of 11B4H11H10 are designated as SEQ ID NOs: 1, 2 and 3 and the CDRs of the light chain variable domain of 11B4H11H10 are designated as SEQ ID NOs: 4, 5 and 6.
(27) Therefore, according to a preferred embodiment, the antibody of the invention is a monoclonal antibody comprising a heavy chain variable domain and a light chain variable domain, wherein the heavy chain variable domain comprises at least one CDR selected from the group consisting of SEQ ID NO: 1, 2 and 3 and/or the light chain variable domain comprises at least one CDR selected from the group consisting of SEQ ID NO: 4, 5 and 6.
(28) In a more preferred embodiment, the heavy chain variable domain comprises the CDRs SEQ ID NO: 1, 2 and 3 and/or the light chain variable domain comprises the CDRs SEQ ID NO: 4, 5 and 6.
(29) In a particular embodiment, the heavy chain variable domain comprises the amino acid sequence SEQ ID NO:7 or is encoded by a nucleic acid comprising the sequence SEQ ID NO:8 and/or the light chain variable domain comprises the amino acid sequence SEQ ID NO:9 or is encoded by a nucleic acid comprising the sequence SEQ ID NO:10.
(30) The term “antibody” as used in the present description encompasses a whole antibody molecule (including polyclonal, monoclonal, chimeric, humanized, or human versions having full length heavy and light chains) as well as an antigen binding antibody fragment. An “antibody fragment” includes any immunoglobulin fragment having the same binding specificity as the corresponding whole antibody. Such fragments are produced according to standard methods; cf. for example Harlow and Lane, “Antibodies, A Laboratory Manual”, CSH Press, Cold Spring Harbor, USA, 1988. Non-limiting examples of antibody fragments include F(ab), Fab′, F(ab′).sub.2, F(v), single chain antibodies (scFv), F(c), F(d).
(31) The antibody of the present invention is preferably produced by animal immunization. Briefly, monoclonal antibodies are generated by injecting animals, for example rats, hamsters, rabbits or mice, with an immunogen comprising the conformationally modified VDR-LBD bound to 1,25-(OH).sub.2 vitamin D or analog thereof, according to methods known per se (Costagliola et al., J Immunol 1998; 160:1458-65). The presence of specific antibody production is monitored after the initial injection and/or after a booster injection by performing an immunodetection assay on a serum sample obtained from the injected animals. From the animals which are found to produce the specific antibody(ies) of interest, spleen cells are removed and subsequently fused with a myeloma cell fusion partner to generate hybridoma cell lines which are then screened for their ability to secrete the antibody(ies) of interest, i.e. antibodies which specifically bind to the VDR-LBD of the complex formed between VDR-LBD and 1,25(OH).sub.2D or analog thereof.
(32) In the detection method of the present invention, the detection of the captured VDR-LBD/1,25(OH).sub.2D complex may be accomplished through a wide range of techniques. For example, a detectable signal may be generated directly by employing a labeled receptor protein or indirectly via a labeled detector molecule which is capable of binding the VDR-LBD/1,25(OH).sub.2D complex captured by the capture moiety. Typically, the detector molecule is another antibody directed to an epitope on the VDR-LBD/1,25(OH).sub.2D complex which is different from the epitope recognized by the capture moiety of the invention (i.e., an anti-VDR-LBD detector antibody).
(33) The detectable label may be any substance capable of producing a signal that is detectable by visual or instrumental means. Suitable labels for use in the present invention include for example fluorescent compounds, chemiluminescent compounds, radioactive compounds, enzymes and enzyme substrates, molecules suitable for colorimetric detection, binding proteins, epitopes, enzymes or substrates. In practice, any signal molecule or label known in the art may be incorporated in embodiments of the method and kit of the present invention.
(34) Any assay format which enables contact between the biological fluid sample and the receptor protein comprising the Ligand Binding Domain of Vitamin D Receptor (VDR-LBD) is suitable for carrying out the detection method of the invention.
(35) According to a preferred embodiment, the detection method of the invention is an in vitro immunoassay performed on a biological fluid sample of a subject or patient. Immunoassays include both homogeneous and heterogeneous assays, as well as competitive and non-competitive sandwich assays.
(36)
(37) In the specific embodiment of
(38)
(39) The sandwich immunoassay of
(40) The sandwich immunoassay may involve the use of a tagged receptor protein comprising VDR-LBD in combination with an anti-tag detector antibody. In this embodiment, the detection of the VDR-LBD/1,25(OH).sub.2D complex captured by the conformational-specific capture antibody is achieved by the specific binding of the detector antibody to the tag which is present on the complex. Preferably, the tag is a polyhistidine tag. In a more specific embodiment, the tag is a chaperone protein.
(41) The immunoassays falling within the scope of the invention may be in any suitable format, such as, for example, radioimmunoassays (RIA), chemiluminescence- or fluorescence-immunoassays, Enzyme-linked immunoassays (ELISA), Luminex-based bead arrays, protein microarray assays, or rapid test formats such as, for instance, immunochromatographic strip tests.
(42) Depending on the format of the immunoassay, the capture antibody and/or the detector antibody may be immobilized on a solid support. Non limiting examples of suitable solid supports are the wells of a microtitre plate, the surface of a microparticle such as a latex, polystyrene, silica, chelating sepharose or magnetic beads, membranes, strips or chips.
(43) As mentioned above, a further aspect of the present invention is a kit for detecting 1,25(OH).sub.2D or analog thereof in a biological fluid sample, the kit comprising the receptor protein and the capture moiety as defined above in connection with the method, as well as a binding buffer which has a pH comprised between 6 and 9. Preferred pH values are comprised between 7 and 8.6, such as 7.2, 7.3, 7.4, 7.5, 7.6, 7.7, 7.8, 7.9, 8.0, 8.1, 8.2, 8.3, 8.4, 8.5 or 8.6. Preferred but not limiting examples of the binding buffer for adjusting the pH of the test sample include 50 mM Tris buffer (pH 7.4), Hepes (6.5-7.5), PBS.
(44) The kit of the invention may further comprise a solid support such as, without limitation, beads, microparticles, nanoparticles, super paramagnetic particles, a microtitre plate, a cuvette, a lateral flow device, a flow cell, or any surface to which a protein or peptide can be passively or covalently bound. Either the receptor protein or the capture moiety of the kit of the invention may be immobilized on the solid support.
(45) Further, the kit of the invention may contain detection means as described above in connection with the detection method.
(46) The following experimental section is provided purely by way of illustration and is not intended to limit the scope of the invention as defined in the appended claims.
EXAMPLES
Example 1: Expression and Purification of Rat VDR-LBD Protein
(47) In order to produce recombinant VDR-LBD proteins to be used as suitable reagents for the methods and kits of the invention, a plasmid-based expression vector was constructed. Briefly, DNA coding for the ligand binding domain of the vitamin D receptor from Rattus norvegicus residues 116-423 with deletion of a 47 amino acid internal loop (165-211) (rVDR-LBD) was cloned into the pET-29b plasmid (Novagen) by using the Nde I/Bgl II restriction site combination. To facilitate the detection and purification of recombinant VDR-LBD protein, a polyhistidine tag can be added at the C-terminus of the protein of interest by cloning a His tag coding sequence downstream of the VDR-LBD coding sequence, followed by a stop codon.
(48) The plasmids encoding the VDR-LBD protein were expressed as inclusion bodies in BL21-CodonPlus(DE3)-RIPL (Stratagene) cells grown in LB supplemented with kanamycin (40 j.Math.tg/L) and chloramphenicol (40 j.Math.tg/L). A starter culture (5 mL) was inoculated with a single bacterial colony and grew in a 14 mL tube at 37° C. (250 rpm) for 6 hrs to reach optical density (OD600) of ˜1. The starter culture was diluted into an overnight culture (35 mL) by 2500-fold and grew in a 125 mL flask at 30° C. (250 rpm) for 15 h (typical OD600 ˜3.7). The overnight culture was diluted in 0.5 L of the expression media in a 2 L flask with OD600 of ˜0.09. The culture grew for ˜2.5 h (250 rpm) to OD600 of 0.6-0.8 and the expression of VDR-LBD was induced by the addition of IPTG to a final concentration of 0.35 mM. The culture continued growing at 37° C. for 6 h before the cells were harvested by centrifugation at 5000 rpm (GS3 rotor) at 4° C. for 15 min. The freshly collected cell pellet (typically 5.5 g/L of culture) was stored at −80° C. for further protein purification.
(49) The cell pellet (5.5 g) was resuspended in 135 mL of lysis buffer containing 50 mM Tris-HCl (pH 8.0), 2 mM EDTA, 10 mM DTT, 0.3 mM phenylmethylsulfonyl fluoride, and 0.5 mg/mL lysozyme, and subjected to sonication with a sonic dismembrator (Fisher). The pellet, including cell debris and inclusion bodies, was obtained by centrifugation at 11000 rpm (SS34 rotor) at 4° C. for 15 min, and washed with 200 mL of the wash buffer (50 mM Tris-HCl, 2 mM EDTA, 100 mM NaCl, pH 8.0) followed by 200 mL of the same wash buffer with 0.5% (v/v) Triton X-100. After each addition, the slurry was stirred gently for 5 min and then centrifuged at 12000 rpm at 4° C. for 20 min. The final pellet was suspended very gently in 200 mL of denaturing buffer containing 40 mM Tris-acetic acid (pH 7.6), 2 mM EDTA, 6 M guanidine-HCl and 100 mM DTT, and stirred for 2 h at room temperature. A clear solution was obtained by centrifugation at 12000 rpm at 4° C. for 20 min. The supernatant was dialyzed against 20 L of dialysis buffer containing 25 mM NaH.sub.2PO.sub.4—Na.sub.2HPO.sub.4 (pH 7.4), 50 mM KCl, and 2 mM DTT at 4° C. overnight. The next day, white precipitate was removed by centrifugation and the supernatant was recovered and dialysis was continued for another 24 h with two changes of the buffer containing 16 mM HEPES (pH 7.4), 25 mM NaCl, 15 mM KCl, and 2 mM DTT. The protein solution was concentrated in an Amicon centrifugal filter (10K MWCO) and exchanged into the final buffer containing 16 mM HEPES (pH 7.4), 25 mM NaCl, 15 mM KCl, and 10 mM TCEP. Buffer exchange was done by repeated dilution and concentration to remove DTT that is incompatible with the His-tag beads. The purity of the protein was analyzed by 12% SDS-PAGE. Protein concentration was determined by the Bradford method using BSA as standard (coefficient 0.055 μg.sup.−1 cm.sup.−1). Typical yield of VDR-LBD is 25-30 mg/L of culture and highly dependent upon the expression level, which is determined by the healthiness of the culture, and the dialysis procedure.
Example 2: Generation of Conformation-Specific Monoclonal Antibodies Capable of Recognizing the VDR-LBD/1,25(OH).SUB.2.D Complex
(50) The strategy pursued by the present inventors for the generation of conformation-specific antibodies was based on the exploitation of the complex consisting of the binding domain of Vitamin D Receptor (VDR-LBD) bound to 1,25(OH).sub.2D as the immunogen. Individual use aliquots of the immunogen formulated with the appropriate adjuvant were injected into BALB/c mice. Following 4-, 6- and 8-weeks, lymphocytes from mice spleens were fused with SP2/0 mouse myeloma cells using polyethylene glycol (PEG) as fusion agent. The hybrid cells were plated over 384 wells in a high through-put 96 well culture plate format.
(51) Antigen-specific immune activity was determined by ELISA directly onto the master fusion plates, using the immunogen of interest, i.e. the VDR-LBD/1,25(OH).sub.2D complex, and the unbound vitamin D ligand binding domain alone as negative control. Briefly, 96-well microtiter plates were coated with 100 μl of 0.56 μg/ml His-tagged recombinant VDR-LBD protein in the unbound form or pre-bound with 1,25(OH).sub.2D, respectively. The pre-binding reaction was carried-out by incubating the VDR-LBD protein overnight in the presence of three molar excess of 1,25(OH).sub.2D (1 mg/ml). Protein adsorption onto the microtiter plates was achieved via specific interactions between the polyhistidine tag and a coating of nickel ions present on the wells surface. After protein adsorption, the plates were washed with PBS-T (0.1% Tween 20 in PBS) and incubated with 100 μl of the monoclonal antibodies under examination diluted 1:16000, for 1 hour at room temperature, with gentle mixing. Following incubation, the plates were washed three times with PBS-T and incubated with 100 μl of HRP-conjugated goat anti-mouse IgGs (1 mg/ml) diluted 1:30000 in PBS-T, for 1 hour at room temperature. The washed plates were then incubated with 100 μl/well of TMB substrate at room temperature for 10 minutes. The reaction was stopped by adding 150 μl/well of 1% HCl solution. The absorbance at 450 nm was measured using a microplate reader.
(52) Such screening strategy enabled the detection and selection of antibody-secreting clones showing specificity towards the VDR-LBD/1,25(OH).sub.2D complex only and not for the unbound ligand binding domain. Table 1 shows ELISA results from two such clones (11B4 and 10A3). Then, the selected hybridomas were cloned by the limiting dilution method and re-screened according to the above-described ELISA method. Clones with the desired titer and specificity were sub-cloned in order to stabilize the antibody expression.
(53) Each of the selected clones was initially tested to determine the isotype of the mouse immunoglobulin and subsequently expanded to production scale. Following the clone expansion, mouse IgGs were isolated by protein A affinity purification using the AKTAprime plus and subjected to a buffer exchange using a Hitrap desalting column to 1×DPBS buffer. The antibody sample thus obtained was sterilized using a 0.2 μm filter, the sample concentration was estimated and the product was sterile-packaged in a polypropylene tube and stored at 4° C.
(54) As a result of the above-described studies, the hybridoma clone named 11B4H11H10 (also denoted as 11B4) was selected for further analysis.
(55) TABLE-US-00001 TABLE 1 (ELISA Screening Data Obtained With 4 Antibodies, Of Which Two Specifically Bind The Anti-VDR-LBD/1,25(OH).sub.2D Complex) ELISA Absorbance at 450 nm VDR-LBD/ Antibody Clone ID 1,25(OH).sub.2D Complex unbound VDR-LBD Ratio 10A3 3.659 0.103 35.5 11B4 3.028 0.121 25.0 12C11 0.569 0.090 6.32 8E2 0.480 0.382 1.26
(56) To demonstrate that the 11B4H11H10 antibody used in the DiaSorin assay does not bind the ligand binding domain (LBD) of the vitamin D receptor in the absence of 1,25-dihydroxyvitamin D (1,25(OH).sub.2D) and that the absorbance in column 3 of Table 1 is merely background, the above-described method of antibody screening was replicated. To determine background absorbance due to non-specific binding to the plate, the ELISA assay were run, in the absence of LBD on the wells. Absorbance at 450 nm for LBD (light grey), LBD+1,25(OH).sub.2D complex (grey), and background (black) are shown in
(57) In addition, using the LIAISON® 1,25 Dihydroxyvitamin D kit, a standard curve was constructed using 0, 25, 50, and 100 pg/mL of 1,25(OH).sub.2D. In addition, the same 1,25(OH).sub.2D samples were enriched with added LBD to double its concentration. If the uncomplexed LBD were to bind the 11B4H11H10 antibody, then the added LBD would generate additional signal (RLUs) in the presence of the same amount of 1,25(OH).sub.2D by forming a sandwich on the bead. The RLU obtained at the same concentrations of 1,25(OH).sub.2D but with additional LBD were plotted on the same graphs as open grey circles (
(58) The above-illustrated selection method may also be used to identify further hybridoma clones secreting antibodies according to the present invention, i.e. mAbs or functional fragments thereof which are capable of specifically binding the Ligand Binding Domain of Vitamin D Receptor bound to 1,25-dihydroxy-vitamin D or analog thereof.
Example 3: Identification of the DNA Consensus Sequence of the Immunoglobulin G VH and VL Gene, Expressed by Hybridoma Clone 11B4H11H10
(59) A master stock vial of 11B4H11H10 was thawed and expanded to generate a representative number of cells for cDNA library constructions. Briefly, 1×10.sup.7 hybridoma cells were isolated from an actively log growth culture of cells in a 75 cm.sup.2 flask and centrifuged at 500×g for 4 minutes in a polypropylene 50 cm.sup.2 sterile centrifuge tube. The total RNA was isolated using TRIzol® Reagent, Invitrogen, and quantified on a Nanodrop™. Hybridoma total RNA (500 ng) was reverse-transcribed using the oligo dT primer procedure. Mouse immunoglobulin variable heavy (Vh) and variable light chains (Vl) were amplified from the cDNA library (RT-PCR) by using specific primers. Those amplified chains were independently inserted, in a random orientation, into a TOPO vector (Invitrogen) by TA cloning. The ligation product was transformed by electroporation into an electrocompetent maintenance strain of E. coli.
(60) Twenty independent bacterial colonies were selected from each transformation plate and expanded by inoculation into 10 ml of LBA broth (100 μg/ml ampicillin) in a 15 ml polypropylene snap cap tube and growth at 37° C. overnight with 250 rpm orbital shaking. Thus, twenty purified plasmid DNA were generated for both Vh and Vl.
(61) Each of the initial twenty Vh and Vl TOPO plasmids was screened by automated DNA sequencing (Functional Biosciences, Madison, Wis.) with a single replicate forward (5′.fwdarw.3′) reaction using T7 sequencing primer to determine whether a full length Vh or Vl insert was present. Upon sequence alignment, a single representative Vh and Vl emerged thus indicating that the hybridoma population at the time of RNA isolation was monoclonal.
(62) Up to ten representative plasmids for both Vh and Vl, which contain the corresponding full-length insert, were selected for additional replicates of DNA sequencing. More specifically, each plasmid underwent two additional T7 forward and BGH reverse reactions to build the consensus sequence.
(63) DNA alignments were performed using CLC Workbench in order to generate the novel mouse immunoglobulin variable heavy and variable light consensus sequence. Upon translation of the identified DNA consensus sequences into amino acid stretches, NCBI BLAST was employed for Vh and Vl protein domain analysis to confirm that the sequences are mouse immunoglobulin genes and to map important structural domains, including the Complementarity determining regions (CDRs).
(64) The DNA consensus sequences of the monoclonal antibody designated as 11B4H11H10, as well as the CDRs thereof, are illustrated in the Sequence Listing.
Example 4: 1,25(OH).SUB.2.D Assay
(65) One of the preferred embodiment of the assay of the invention was developed as follows. Paramagnetic microparticles (PMPs) (Dynal, Norway) were coated with the 11B4 monoclonal antibody following the supplier instructions. The recombinant VDR-LBD that was used in the assay was prepared as described in Example 1, and was coupled to an affinity tag (designated in the following as “TAG”). The 11B4H11H10 monoclonal antibody that was used in the assay was prepared as described in Example 2. A mouse monoclonal anti TAG antibody was conjugated with cyclic AminoButhylEthylisoluminol (cABEI) in PBS buffer pH 7.4. The calculated cABEI incorporation was from 2-3 molecules per antibody molecule. Calibrators were prepared by adding different concentrations of an ethanolic solution of 1,25(OH).sub.2D into a steroid-free, charcoal-stripped human serum. The assay buffer formulation consisted of TRIS 50 mM pH 7.4, CHAPS 0.02%, EDTA 1 mM, heparin at 8 mg/ml and 1% mouse serum to mitigate heterophilic human anti mouse (HAMA) interferences.
(66) A major challenge of an automated assay not using any off-line pre-analytical/sample pre-treatment steps is the ability of the assay to specifically capture and detect the whole amount of 1,25(OH).sub.2D, or analogues of the active form of vitamin D, in a biological matrix (e.g. serum or plasma) without interference by other vitamin D metabolites such as 25(OH)D, 24,25(OH).sub.2D and 25,26(OH).sub.2D which can be present at levels 1000-fold higher than 1,25(OH).sub.2D. This challenge is further complicated by the presence of Vitamin D binding protein (DBP) and albumin, which are abundant in circulation and serve as the major binding proteins for 25(OH)D, 1,25(OH).sub.2D, and other metabolites of vitamin D, whereby 85% to 90% is bound to DBP and 10 to 15% is bound to albumin. Furthermore, DBP levels increases up to 2-5 fold in high-estrogen states, such as pregnancy.
(67) Therefore, in order to verify the capability of the assay of the invention to specifically capture and detect the whole amount of circulating 1,25(OH).sub.2D in a VDBP-independent manner, the inventors prepared a panel of human serum samples (N=17; 8 apparently healthy individuals and 9 pregnant women) spanning the measuring range of the assay. The expected 1,25(OH).sub.2D values (pg/mL) in these 17 samples were determined by using a FDA-approved 1,25(OH).sub.2D radioimmunoassay from DiaSorin Inc. in Stillwater, Minn. USA (Part No. 65100E/100 Tubes; 1,25-Dihydroxyvitamin D), which was then used as a reference method.
(68) The assay schematically illustrated in
(69) To compare the 1,25(OH).sub.2D assay of the invention with the DiaSorin RIA as the reference method, the RLUs obtained with each sample were transformed into pg/mL based on the RLUs vs. dose (pg/mL) obtained with the standard curve illustrated in
(70) Finally, to demonstrate the specific recovery of 1,25(OH).sub.2D in human serum, the concentration (ng/mL) of total 25(OH)D in each panel sample (N=17) was determined using the FDA 510(k) cleared LIAISON® 25 OH Vitamin D TOTAL Assay (Part No. 310600, DiaSorin Inc., Stillwater, Minn., USA). Since there was no correlation between the 510(k) cleared DiaSorin RIA 1,25(OH).sub.2D doses and the 510(k) cleared LIAISON® 25 OH Vitamin D TOTAL Assay 25(OH)D doses (
(71) In Table 2, RLUs obtained with each sample were transformed into dose (pg/mL) based on the RLUs vs. dose obtained with the LIAISON standard curve in
(72) TABLE-US-00002 TABLE 2 RLU Response With LIAISON 1,25 (OH).sub.2D Assay vs. Dose LIAISON 1,25 (OH).sub.2D Dose No. Sample ID Gender Type RLUs (pg/mL) 1 M10284 Male Apparently Healthy 246,408 81.9 2 M10279 Male Apparently Healthy 231,717 73.7 3 M10302 Male Apparently Healthy 183,344 48.1 4 F20378 Female Apparently Healthy 182,691 47.8 5 F20436 Female Apparently Healthy 260,932 89.8 6 F20198 Female Apparently Healthy 208,126 60.7 7 F20151 Female Apparently Healthy 221,471 68.0 8 F20416 Female Apparently Healthy 137,640 23.8 9 8316745 Female Pregnant 245,686 81.5 10 8316205 Female Pregnant 419,906 164.0 11 8315465 Female Pregnant 276,473 97.5 12 8315505 Female Pregnant 201,329 57.1 13 8316605 Female Pregnant 208,752 61.1 14 8316585 Female Pregnant 373,007 142.0 15 8316765 Female Pregnant 298,588 107.0 16 8316815 Female Pregnant 261,589 90.1 17 8315375 Female Pregnant 338,801 126.0
(73) All publications and patents mentioned in this specification are herein incorporated by reference to the same extent as if each individual publication or patent application was specifically and individually indicated to be incorporated by reference in its entirety. While the invention has been described in connection with specific embodiments thereof, it will be understood that it is capable of further modifications and this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure as come within known or customary practice within the art to which the invention pertains and as may be applied to the essential features hereinbefore set forth.