ANTIGEN-SPECIFIC T CELLS FOR INDUCING IMMUNE TOLERANCE
20220054608 · 2022-02-24
Inventors
Cpc classification
C12N5/0638
CHEMISTRY; METALLURGY
A61K35/17
HUMAN NECESSITIES
C12N5/0637
CHEMISTRY; METALLURGY
A61P37/06
HUMAN NECESSITIES
A61K39/0008
HUMAN NECESSITIES
International classification
A61K39/00
HUMAN NECESSITIES
A61K35/17
HUMAN NECESSITIES
A61P37/06
HUMAN NECESSITIES
Abstract
Described herein are agents and methods for targeting antigen-specific B cells using engineered T cells, such as regulatory T cells or cytotoxic T cells, or bi-specific antibodies. The agents and methods can be used to reduce undesirable immune responses.
Claims
1. A method of targeting antigen-specific B cells, comprising exposing B cells specific to a target antigen to regulatory T cells that express on their cell surface the target antigen or a domain thereof recognized by said antigen-specific B cells.
2. The method of claim 1, wherein the regulatory T cells are transduced with a B-cell-targeting antibody receptor (BAR) construct comprising (i) an extracellular domain comprising said target antigen or domain thereof and (ii) an intracellular signaling domain.
3. The method of claim 2, wherein said intracellular signaling domain comprises one or more signaling domains of CD28-CD3ζ, 4-1BB, ICOS, and CTLA-4.
4.-5. (canceled)
6. The method of claim 1, wherein the regulatory T cells are selected from CD4.sup.+CD25.sup.hiCD127.sup.loFoxp3.sup.+ regulatory T cells, CD4.sup.+CD25.sup.hiCD127.sup.loFoxp3.sup.+Helios.sup.+ regulatory T cells, CD4.sup.+CD25.sup.hiFoxp3.sup.+ regulatory T cells, and CD4.sup.+CD25.sup.hiFoxp3.sup.+Helios.sup.+ regulatory T cells.
7.-8. (canceled)
9. The method of claim 3, wherein said intracellular signaling domain comprises one or more signaling domains of CD28-CD3ζ, 4-1BB, and ICOS.
10.-11. (canceled)
12. The method of claim 9, wherein said T cells are selected from CD8+ T cells and natural killer (NK) T cells.
13. The method of claim 1, wherein the method is effected in a patient suffering from or at risk of developing an undesirable immune response to said target antigen.
14. The method of claim 13, wherein said patient is receiving a biotherapeutic treatment for a genetic disease selected from hemophilia or Pompe's, or is receiving an allograft transplant.
15.-16. (canceled)
17. The method of claim 13, wherein said target antigen is selected from human clotting factor VIII, factor IX, and myelin basic protein (MBP).
18. (canceled)
19. The method of claim 13, wherein said undesirable immune response is associated with an allergy, allergic response, or asthma and said target antigen is an antigen associated with the allergy, allergic response, or asthma.
20. The method of claim 1, wherein said target antigen or domain thereof recognized by said antigen-specific B cells is selected from human clotting factor VIII, the C2 domain of human clotting factor VIII, the A2 domain of human clotting factor VIII, and the A2-C2 domain of human clotting factor VIII.
21.-39. (canceled)
Description
BRIEF DESCRIPTION OF FIGURES
[0019]
[0020]
[0021]
[0022]
[0023]
[0024]
[0025]
[0026]
[0027]
[0028]
[0029]
[0030]
[0031]
[0032]
[0033]
[0034]
[0035]
[0036]
[0037]
[0038]
DETAILED DESCRIPTION
[0039] Described herein are agents and methods for targeting antigen-specific B cells using engineered regulatory T cells or cytotoxic T cells and bispecific antibodies. The agents include engineered human cytotoxic T cells (such as CD8+ or NK T cells), engineered human regulatory T cells, and bi-specific antibodies. The agents and methods can be used to reduce undesirable immune responses, including minimizing or eliminating adverse, undesirable immune responses, such as may arise in response to protein therapy for genetic diseases, or to allergens or toxins used in immunotoxins. The approaches described herein use the engineered regulatory T cells, or bispecific antibodies to suppress or kill antigen-specific B cells that are the precursors for antibody production against the target antigen (e.g., therapeutic proteins or allografts), thus reducing or eliminating the undesired antibody response.
Definitions
[0040] Technical and scientific terms used herein have the meanings commonly understood by one of ordinary skill in the art to which the present invention pertains, unless otherwise defined. Reference is made herein to various methodologies known to those of ordinary skill in the art. Publications and other materials setting forth such known methodologies to which reference is made are incorporated herein by reference in their entireties as though set forth in full. Any suitable materials and/or methods known to those of ordinary skill in the art can be utilized in carrying out the present invention. However, specific materials and methods are described. Materials, reagents and the like to which reference is made in the following description and examples are obtainable from commercial sources, unless otherwise noted.
[0041] As used herein, the singular forms “a,” “an,” and “the” designate both the singular and the plural, unless expressly stated to designate the singular only.
[0042] The term “about” and the use of ranges in general, whether or not qualified by the term about, means that the number comprehended is not limited to the exact number set forth herein, and is intended to refer to ranges substantially within the quoted range while not departing from the scope of the invention. As used herein, “about” will be understood by persons of ordinary skill in the art and will vary to some extent on the context in which it is used. If there are uses of the term which are not clear to persons of ordinary skill in the art given the context in which it is used, “about” will mean up to plus or minus 10% of the particular term.
[0043] As used herein “subject” denotes any mammal, including humans.
[0044] Cytotoxic T cells and natural killer (NK) T cells play an important role for immune defense against intracellular pathogens, including viruses and bacteria, and for tumor surveillance. Cytotoxic T cells recognize surface markers on other cells in the body and label those cells for destruction. The most well-understood cytotoxic T cells are those that express CD8 (CD8.sup.+ T cells), and NK T cells.
[0045] Regulatory T cells suppress immune responses of other cells. They come in several forms with the most well-understood being those that express CD4, CD25, Foxp3, and Helios (CD4.sup.+CD25.sup.+ Tregs). These cells are involved in shutting down immune responses after they have successfully eliminated invading organisms, and in preventing autoimmunity.
[0046] Previously, T cells have been rendered specific for cancer antigens (CARs) in order to specifically destroy cancer cells, e.g., in order to promote an immune response. However, the approaches described herein use engineered cytotoxic T cells or engineered regulatory T cells in order to modulate (turn off) undesirable immune responses, e.g., to reduce an immune response. The use of engineered cytotoxic T cells, engineered regulatory T cells, or bispecific antibodies described herein to specifically target antigen-specific B cells for killing has not heretofore been described.
[0047] In accordance with some embodiments, a regulatory T cell or cytotoxic T cell is engineered to express on its cell surface a target antigen or a domain thereof recognized by an antigen-specific B cell. Such engineered regulatory T cells or cytotoxic T cells can be used in methods of targeting antigen-specific B cells, comprising exposing B cells specific to a target antigen to regulatory T cells or cytotoxic T cells that express on their cell surface the target antigen or a domain thereof recognized by the antigen-specific B cells. In accordance with such methods, the engineered regulatory T cells or engineered cytotoxic T cells are brought into proximity/contact with the antigen-specific B cells via the target antigen or domain thereof expressed on the surface of the T cells and bound by the antigen-specific B cells, such that the engineered T cells induce killing of the antigen-specific B cells.
[0048] In accordance with other embodiments, a regulatory T cell or cytotoxic T cell is engineered to express on its cell surface a single chain antibody that is specific for a target antigen. Such engineered regulatory T cells or cytotoxic T cells can be used in methods of targeting antigen-specific B cells, comprising exposing B cells specific to a target antigen to (i) regulatory T cells or cytotoxic T cells that express on their cell surface a single chain antibody specific for the target antigen and (ii) the target antigen (or a fragment thereof that can be bound by both the single chain antibody and antigen-specific B cells). In some embodiments, the single chain antibody is bound to the target antigen or domain thereof recognized by the antigen specific B cells before exposure to the antigen specific B cells.
[0049] In accordance with other embodiments, a bispecific antibody is prepared that has a T cell-binding end and a B cell-targeting end, wherein the B cell-targeting end comprises a domain of the target antigen recognized by the antigen-specific B cells cloned into one IgG arm, and a T cell-binding moiety cloned into the other arm. In some embodiments, the T cell-binding end comprises an anti-CD8 single chain antibody or an anti-CD3e single chain antibody. In other embodiments, the T cell-binding end comprises an antibody that specifically recognizes the regulatory T cell. The bispecific antibodies are useful in methods comprising exposing antigen-specific B cells to regulatory T cells or cytotoxic T cells bound by the bispecific antibodies. In such methods, the regulatory T cells or cytotoxic T cells are brought into proximity/contact with the antigen-specific B cells via binding between the bispecific antibody and the T cells and antigen-specific B cells, such that the regulatory T cells or cytotoxic T cells induce suppression or killing of the antigen-specific B cells.
[0050] Cytotoxic T cells useful herein may be selected from CD8+ T cells and natural killer (NK) T cells. In accordance with any of these embodiments, the cytotoxic T cell may maintain its phenotype after transduction and long-term expansion.
[0051] Regulatory T cells useful herein may be isolated by Fluorescent Activated Cell Sorting (FACS) based on the cell surface markers, such as CD4, CD 25, and CD127. In some embodiments, regulatory T cells of interest include those with little or no expression of CD127) (CD127.sup.lo), and/or with high expression of CD25 (CD25.sup.hi). In some embodiments, the regulatory T cells express CD4, CD25, Foxp3, and Helios. In some embodiments, the regulatory T cells are CD4.sup.+CD25.sup.hiCD127.sup.loFoxp3.sup.+Helios.sup.+ regulatory T cells (
[0052] In accordance with any of these embodiments, autologous polyclonal regulatory T cells and HLA-matched allogeneic regulatory T cells can be used as donor cells. In some embodiments, endogenous TCR on donor regulatory T cells can be inactivated using existing technologies such as CRISPR/Cas9.
[0053] In accordance with any of these embodiments, autologous polyclonal cytotoxic T cells and HLA-matched allogeneic cytotoxic T cells can be used as donor cells. In some embodiments, endogenous TCR on donor cytotoxic T cells can be inactivated using existing technologies such as CRISPR/Cas9.
[0054] Engineered regulatory T cells or cytotoxic T cells as described herein can be made by adapting methods known in the art, including the methods of isolating and transducing T cells described in U.S. Provisional Application 61/821,857 and U.S. patent application Ser. No. 14/889,962, filed Nov. 9, 2015 (published as US 2016/0194605), which are incorporated herein by reference in their entireties. Gene and protein sequences of target antigens and domains thereof recognized by antigen-specific B cells are known in the art, and include those set forth in U.S. Provisional Application 61/821,857 and U.S. application Ser. No. 14/889,962 and in U.S. Provisional Application 61/990,456 and PCT Application PCT/US15/29642, filed May 7, 2015 (published as WO 2015/171863), which are incorporated herein by reference in their entireties.
[0055] In accordance with any of these embodiments, the cytotoxic T cells or regulatory T cells may be transduced with a B-cell-targeting antibody receptor (BAR) construct comprising (i) an extracellular domain comprising the target antigen or a domain thereof recognized by the B cell and (ii) an intracellular signaling domain. For cytotoxic T cells, the intracellular signaling domain may comprise one or more signaling domains, such as one or more signaling domains of CD28-CD3ζ, 4-1BB, and ICOS. For regulatory T cells, the intracellular signaling domain may comprise one or more signaling domains, such as one or more signaling domains of CD28-CD3ζ, 4-1BB, ICOS, and CTLA-4.
[0056] In accordance with any of these embodiments, the target antigen or domain thereof recognized by the antigen-specific B cells may be a therapeutic agent, such as a therapeutic protein or an allergen or toxins used as an immunotoxin, such as a therapeutic protein selected from human clotting factor VIII, human clotting factor IX, the C2 domain of human clotting factor VIII, the A2 domain of human clotting factor VIII, and the A2-C2 domain of human clotting factor VIII, an antigen associated with diabetes, such as insulin or glutamic acid decarboxylase (GAD65), an antigen associated with uveitis, such as arrestin, myelin basic protein (MBP) or other antigens associated with multiple sclerosis, such as thyroperoxidase (TPO), an antigen associated with thyroiditis, such as thyroperoxidase (TPO), an antigen associated with myasthenia gravis, such as acetylcholine receptor (AchR), an antigen associated with antiphospholipid syndrome (APS) (as may be associated with systemic lupus erythematosus (“SLE” or “Lupus”) or repeated miscarriage), or a domain of any of the foregoing recognized by the B cell. Alternatively, the target antigen may be associated with a transplant, such as a cell, tissue, or organ of an allograft transplant. Alternatively, the target antigen may be an antigen associated with an allergy, allergic response, or asthma.
[0057] Any of the engineered T cells or antibodies described herein can be used in any of the methods outlined above. In some embodiments, the method is effected in a patient suffering from or at risk of developing an undesirable immune response to the target antigen. In some embodiments, the patient is suffering from autoimmune diseases, anti-drug antibody development, or allergy. In some embodiments, the patient is suffering from an autoimmune disorder, such as one or more selected from the group consisting of multiple sclerosis, diabetes, uveitis, thyroiditis, myasthenia gravis, or antiphospholipid syndrome (APS), or is receiving a biotherapeutic treatment for a genetic disease, such as Pompe's or hemophilia (including hemophilia A and hemophilia B). In specific embodiments, the patient is a hemophilia patient (including hemophilia A and hemophilia B). In other specific embodiments, the patient is receiving a transplant. In other specific embodiments, the patient is suffering from or at risk of developing an undesired immune response to Factor VIII therapy. In accordance with any of these embodiments, the method may be effective to reduce or prevent the patient's immune response to the target antigen. In other specific embodiments, the patient suffers from an allergy or allergic response or asthma, and target antigen may be an antigen associated with the allergy or allergic response or asthmatic response, and the method may be effective to reduce or eliminate the allergy or allergic response or to treat the asthma or reduce the asthmatic response.
[0058] In accordance with any of the regulatory T cell embodiments, the target antigen is not desmoglein (Dsg) 3 or a domain thereof recognized by antigen-specific B cells. In some embodiments, the target antigen is not Dsg3 EC1, EC2, EC3, or EC4. In accordance with any of the cytotoxic T cell embodiments, the target antigen is not desmoglein (Dsg) 3 or a domain thereof recognized by antigen-specific B cells. In some embodiments, the target antigen is not Dsg3 EC1, EC2, EC3, or EC4.
EXAMPLES
[0059] T cell isolation, activation, transduction, flow-cytometry, cell proliferation assays, JAM assays, and ELISPOT assays were conducted according to procedures known in the art, and can be conducted in manners similar to those described in U.S. Provisional Application 61/821,857, U.S. Provisional Application 61/990,456, U.S. application Ser. No. 14/889,962, filed Nov. 9, 2015 (published as US 2016/0194605), and PCT Application PCT/US15/29642, filed May 7, 2015 (published as WO2015/171863), which are incorporated herein by reference in their entireties.
Example 1—Construction of FVIII-C2 B Cell Antibody Receptor (BAR) Construct
[0060] A mouse CD4 N-terminal signaling peptide, FVIII-C2,human CD28 transmembrane, intracellular, human CD3ζ, an internal ribosomal entry site (IRES) and GFP gene were cloned into a vector to create the FVIII-C2 BAR construct. A control construct where the gene encoding OVA replaced FVIII-C2 also was prepared (the OVA-BAR construct). The IRES allows the BAR construct and GFP to be expressed as a single mRNA molecule, such that measurement of GFP correlates to BAR construct expression. The results in
[0061] This BAR construct can be used to transduce cytotoxic T cells or regulatory T cells.
Example 2—Expression of BAR on the Surface of Cytotoxic T Cells
[0062] Isolated CD8+application Ser. No. cytotoxic T cells were activated and transduced with replication deficient BAR retrovirus using retronectin. GFP expression was analyzed 24 hrs post transduction.
[0063] Flow cytometry using known antibodies against FVIII-C2 and OVA was used to determine whether the BAR construct was expressed on the T cell surface. Anti-A2 and anti-OVA antibodies were used as controls. The results in
[0064] To observe the proliferation competency of the BAR-expressing T cells, T cells were transduced and rested for 10 days, and then irradiated-PBMC pulsed with anti-FVIII sera were added at 2:1 to BAR-expressing T cells. Cells were grown for 48 hrs and radioactive tritiated thymidine uptake assay was performed for 24 hrs. The thymidine uptake by the proliferating T cells was measured. The results in
Example 3—Killing of B Cells by BAR-Transduced Cytotoxic T Cells
[0065] To determine whether FVIII-C2 BAR transduced cytotoxic T cells are able to kill α-FVIII hybridoma, a JAM test was conducted with 2C11 (anti-C2) B cell hybridoma cells. The 2C11 (anti-C2) B cell hybridoma cells were radiolabeled with tritiated thymidine for 24 hrs and C2-BAR transduced CD8+ T cells were added at various ratios and incubated for 5 hrs. At the end of the test, radioactivity was measured. As shown in
[0066] To quantify the hybridoma cell viability, an ELISPOT assay was carried out with FVIII-C2 BAR transduced CD8+ T cells. 2C11 (anti-C2) B cell hybridoma cells were incubated with C2-BAR CD8 T cells at various ratios for 5 hrs and are then grown for 12 hrs on a FVIII coated plate. Number of spots formed at the end of the assay was quantified. The results in
[0067] To observe A2-BAR mediated cytolysis of α-FVIII hybridoma, FVIII A2-BAR transduced CD8 T cells were incubated with α-FVIII hybridoma. Images were taken at 5, 20, 30, 40 and 55 minutes after the incubation. As shown in
Example 4—Construction, Expression of BAR on Human CD4+ Regulatory T Cells
[0068] Constructs as depicted in
[0069] This construct also can be also be used to transduce cytotoxic T cells.
Example 5—Functionality of BAR on Transduced Human CD4+ Regulatory T Cells
[0070] To determine whether successfully expressed BAR constructs on the transduced regulatory T cells can actually transmit signal and activate the cells upon interaction with cognate B cell or antibody, proliferation response of OVA-BAR transduced human CD4+ T cells was tested. Human CD4+ regulatory T cells were transduced with an OVA-BAR construct in a concentrated retroviral supernatant, labeled with cell proliferation dye eFlour450, and cultured with either cognate anti-OVA antibody or control IgG for 3 days in the presence of irradiated PBMC. Cell proliferation was analyzed by flow cytometry. The cells were gated on live GFP+ cells. The results reported in
Example 6—Long-Term Maintenance of Phenotype of Transduced Human Regulatory T Cells
[0071] In order to obtain enough regulatory T cells for adoptive therapy, BAR-transduced regulatory T cells need to be expanded in vitro. One known limitation facing human regulatory T cell therapy is that in vitro expanded human regulatory T cells often quickly lose Foxp3 and/or Helios expression, and suppressive function. To confirm that BAR-transduced, long term in vitro-expanded human regulatory T cells retain the co-expression of Foxp3 and Helios, FACS analysis for Foxp3 and Helios expression was conducted on BAR-transduced regulatory T cells after about 3 weeks in vitro expansion. The results reported in
Example 7—Generation of BAR-Transduced, In Vitro-Expanded Human Regulatory T Cells
[0072] To transduce regulatory T cells with a BAR construct, human regulatory T cells were first stimulated for two days. Stimulated cells were transduced with concentrated retroviral supernatant. The transduced cells were maintained and rested for 8 days without additional stimuli. The GFP.sup.+ CD4 cells were isolated by FACS sorting, and used for re-stimulation and expansion. The quality of the transduced regulatory T cells was checked by FACS, and the cells were harvest for experiment. A timeline for generation of BAR-transduced regulatory T cells is shown in
Example 8—In vivo Suppression of Anti-FVIII Antibody Development by BAR Regulatory T Cell Therapy in Naïve E16 Mice
[0073] A xenogeneic mouse model was used to validate the effectiveness of BAR-transduced regulatory T cell therapy. As outlined in