USE OF AMNIOTIC FLUID PEPTIDES FOR PREDICTING POSTNATAL RENAL FUNCTION IN CONGENITAL ANOMALIES OF THE KIDNEY AND THE URINARY TRACT
20220050113 · 2022-02-17
Inventors
- Joost SCHANSTRA (Toulouse Cedex 4, FR)
- Julie KLEIN (Toulouse Cedex 4, FR)
- Benjamin BREUIL (Toulouse Cedex 4, FR)
- Stéphane DECRAMER (Toulouse, FR)
- Bénédicte BUFFIN-MEYER (Toulouse Cedex 4, FR)
Cpc classification
G01N2800/347
PHYSICS
International classification
Abstract
Bilateral congenital anomalies of the kidney and urinary tract (CAKUT) are the main cause of childhood chronic kidney disease (CKD). Accurate and non-biased prenatal prediction of postnatal disease evolution is currently lacking, but is essential for prenatal counseling and disease management. Here the inventors aimed to develop an objective and quantifiable risk prediction method based on amniotic fluid (AF) peptides. 178 fetuses with bilateral CAKUT were included in a prospective multicenter study. The AF peptide content was studied using capillary electrophoresis coupled to mass spectrometry. The endpoint was early-onset renal failure (CKD stage 3-5) or death due to end-stage renal disease at two years of age. Among the ˜7000 peptide candidates, 98 were associated with early severe renal failure. The most frequently found peptides associated with severe disease were fragments from extracellular matrix proteins and thymosin-P4. Combination of those 98 peptides in a classifier lead to the prediction of postnatal renal outcome in a blinded validation set of 51 patients with a 88% (95% CI: 64-98) sensitivity, 97% (95% CI: 85-100) specificity and an AUC of 0.96 (95% CI: 0.87-1.00), outperforming predictions based on currently used clinical methods. The classifier also predicted normal postnatal renal function in 75% of terminated pregnancies where fetopathology showed kidneys compatible with normal life. Analysis of AF peptides thus allows a precise and quantifiable prediction of postnatal renal function in bilateral CAKUT with potential major impact on pre- and postnatal disease management.
Claims
1. A method for predicting postnatal renal function in a fetus diagnosed with bilateral congenital anomalies of the kidney and the urinary tract comprising quantifying in an amniotic fluid sample obtained from the mother the level of at least one peptide of Table A.
2. The method of claim 1 wherein the level of at least 1; 2; 3; 4; 5; 6; 7; 8; 9; 10; 11; 12; 13; 14; 15; 16; 17; 18; 19; 20; 21; 22; 23; 24; 25; 26; 27; 28; 29; 30; 31; 32; 33; 34; 35; 36; 37; 38; 39; 40; 41; 42; 43; 44; 45; 46; 47; 48; 49; 50; 51; 52; 53; 54; 55; 56; 57; 58; 59; 60; 61; 62; 63; 64; 65; 66; 67; 68; 69; 70; 71; 72; 73; 74; 75; 76; 77; 78; 79; 80; 81; 82; 83; 84; 85; 86; 87; 88; 89; 90; 91; 92; 93; 94; 95; 96; 97 or 98 peptides from Table A is determined in the amniotic fluid sample.
3. The method of claim 1 wherein the level of peptide 31862 is determined in the amniotic fluid sample.
4. The method of claim 1 wherein the levels of 2 peptides selected from the group consisting of peptides 4697, 5420, 6196, 6400, 6600, 7437, 8721, 15510, 17010, 17207, 17264, 19221, 20228, 21320, 21342, 21353, 21684, 21830, 22456, 23894, 24856, 24868, 26070, 27115, 29894, 31787, 32876, 33930, 34055, 35853, 36447, 36627, 41269, 42122, and 45055 are determined in the amniotic fluid sample.
5. The method of claim 4 wherein the 2 peptides are selected from Table 2.
6. The method of claim 1 wherein the levels of 3 peptides selected from the group consisting of peptides 2029, 4727, 5019, 5116, 5781, 7823, 10250, 10640, 11078, 14475, 15732, 16805, 17301, 17453, 18627, 18649, 18837, 20863, 20876, 21028, 21956, 22377, 22992, 23789, 24148, 24608, 25060, 25800, 29880, 31488, 32038, 33880, 34805, 35226, 35677, 36283, 37285, 37566, 40022, and 64283 are determined in the amniotic fluid sample.
7. The method of claim 6 wherein the 3 peptides are selected from Table 3.
8. The method of claim 1 which further comprises measuring at least one clinical parameter selected from the group consisting of Age, gestational age at AF sampling; AF, amniotic fluid volume; bCAKUTPep-Age, combination of the bCAKUTPep classifier with gestational age at sampling; bCAKUTPep-AF, combination of the bCAKUTPep classifier with AF volume; bCAKUTPep-AF/Age, combination of the bCAKUTPep classifier with both gestational age at sampling and AF volume.
9. The method of claim 8 wherein the levels of 2 peptides selected from the group consisting of peptides 4727, 6400, 6600, 10786, 17760, 21342, 21684, 31862, 45055 are combined with amniotic fluid volume (AF) for predicting postnatal renal function.
10. The method of claim 9 wherein the levels of 2 peptides selected from Table 5 and amniotic fluid volume (AF) are measured for predicting postnatal renal function.
11. The method of claim 8 wherein the levels of 3 peptides selected from the group consisting of peptides 2029, 3917, 4697, 4793, 5019, 5116, 5420, 5781, 6196, 7437, 7823, 8721, 10250, 10640, 11078, 13891, 14475, 14735, 15510, 15732, 15884, 16197, 16805, 17010, 17207, 17264, 17301, 17453, 18627, 18649, 18837, 19221, 19732, 19950, 20228, 20643, 20863, 20876, 21028, 21076, 21320, 21353, 21830, 21938, 21956, 22377, 22456, 22992, 23577, 23789, 23894, 24148, 24421, 24608, 24856, 24868, 25060, 25170, 25301, 25800, 26070, 27115, 28628, 29880, 29894, 31488, 31787, 32038, 32876, 33930, 34055, 34805, 35226, 35677, 35853, 36283, 36447, 36627, 37285, 37566, 37690, 40022, 41269, 42122, 42214, 64283 are combined with amniotic fluid volume (AF) for predicting postnatal renal function.
12. The method of claim 12 wherein the levels of 3 peptides selected from Table 6 and amniotic fluid volume (AF) are measured for predicting postnatal renal function.
13. A method for predicting postnatal renal function in a fetus diagnosed with bilateral congenital anomalies of the kidney and the urinary tract comprising quantifying in an amniotic fluid sample obtained from the mother the level of thymosin-β4 or a fragment thereof.
14. The method of claim 13 wherein the level of Ac-SDKP is determined in the amniotic fluid sample.
15. The method of claim 13 wherein the fragment is selected from the group consisting of peptides 35677, 33930 and 31862 as depicted in Table A.
16. The method according to claim 1, wherein the level of the at least one peptide is determined by using a binding partner or by mass spectrometry.
17. The method of claim 1 wherein a score which is a composite of expression levels of a plurality of different peptides is determined and compared to a reference value wherein a difference between said score and said reference value indicates whether the fetus is at risk of having postnatal renal dysfunction.
18. The method of claim 1 which comprises the use of a classification algorithm selected from Linear Discriminant Analysis (LDA), Topological Data Analysis (TDA), Neural Networks, Support Vector Machine (SVM) algorithm and Random Forests algorithm (RF).
19. The method of claim 1 which comprises a) quantifying the level of a plurality of peptides of Table A in the amniotic sample; b) implementing a classification algorithm on data comprising the quantified plurality of peptides so as to obtain an algorithm output; c) determining the probability that the fetus will develop a postnatal renal dysfunction from the algorithm output of step b).
20. The method of claim 19 wherein the classification algorithm implements at least one clinical parameter selected from the group consisting of Age, gestational age at AF sampling; AF, amniotic fluid volume; bCAKUTPep-Age, combination of the bCAKUTPep classifier with gestational age at sampling; bCAKUTPep-AF, combination of the bCAKUTPep classifier with AF volume; bCAKUTPep-AF/Age, combination of the bCAKUTPep classifier with both gestational age at sampling and AF volume.
21. The method of claim 20 wherein the classification algorithm implements the amniotic fluid volume (AF).
Description
FIGURES
[0050]
[0051]
[0052]
EXAMPLE
[0053] Methods
[0054] Study Patients
[0055] Two-hundred women consented to participate in the study, including 178 originally identified as having a pregnancy with a fetus presenting bilateral CAKUT (data not shown) and 22 from non-CAKUT pregnancies. The 22 samples from non-CAKUT fetuses were obtained from pregnancies tested, but being negative, for chromosomal abnormalities. During follow-up of the 178 CAKUT patients, 28 pregnancies were excluded. The trial was performed in accordance with the Declaration of Helsinki and with Good Clinical Practice guidelines. Patients were recruited in France and in Belgium. For all patients definite information on the renal status after 2 years of postnatal follow-up was obtained. The research was approved by national ethics committees (No RCB 2010-AO1151-38, France and S 55406 and B32220096569, Belgium) and informed consent was obtained from each participant.
[0056] Fetopathology and Analysis of Renal Function
[0057] Fetopathology was assessed for fetuses after termination of pregnancy (TOP) by 3 independent pathologists and were attributed a severity renal score: HS, high severity, defined by extensive dysplasia and/or hypoplasia; S, severe, segmental dysplasia and/or hypoplasia with alternation between healthy and pathological areas; LS, low severity, corresponding to kidneys with nearly normal parenchyma or little segmental dysplasia and/or hypoplasia. Dysplasia was defined by alteration of the renal structure with both glomerular and tubular lesions, persistence of primitive medullar tubules surrounded by fibromuscular cells and cartilaginous islets; hypoplasia was histologically defined by a reduction of structurally normal nephron number. At least one HS score without any LS score was interpreted as fetuses with renal lesions incompatible with normal life. At least two LS scores without any HS score was interpreted as compatible with normal life. All other combinations of scores or absence of fetopathology data were considered as inconclusive. Renal function was estimated at 2 years of life using serum creatinine concentrations according the Schwartz method.sup.13.
[0058] Sample Collection and Preparation, Peptidome Analysis and Data Processing
[0059] AF collection, sample preparation, and peptidome analysis by capillary electrophoresis coupled to mass spectrometry (CE-MS) and data processing were previously described.sup.12.
[0060] Statistical Analysis
[0061] Significant peptides were selected by Wilcoxon analysis followed by correction for multiple testing using the method of Benjamini-Hochberg.sup.14. The prognostic ‘bCAKUTPep’ peptide classifier was generated using the Random Forest (RF)-package.sup.15 of R. Predictive performance was assessed by calculating sensitivity, specificity, area under the receiver-operating-characteristic curve (AUC) and likelihood ratios using Medcalc (Version 14.12.0).
[0062] Results:
[0063] Characteristics of the Study Population
[0064] Among the 140 prospectively included patients with bilateral CAKUT, the major etiologies were hyperechogenic kidneys (40/140) and lower urinary tract obstruction (29/140) representing 49% of the patients (Table 1).
[0065] 69/140 (49%) of the fetuses had normal or moderately reduced renal function (eGFR>60 ml/min/1.73 m.sup.2) at 2 years postnatally. Etiologies mostly associated to normal outcome were non-obstructive urinary tract anomalies and upper urinary tract obstruction. In contrast, 71/140 (51%) of the fetuses developed postnatal CKD (eGFR<60 ml/min/1.73 m.sup.2 at 2y) or perinatal death due to ESRD or were subjected to termination of pregnancy (TOP). Non-functioning kidneys and lower urinary tract obstruction were the main etiologies associated to these poor outcomes.
[0066] Severe renal lesions incompatible with CKD-free survival were confirmed by fetopathology for 24 of the 60 fetuses submitted to TOP. Considering only patients for which we had definite endpoint data, the prevalence of early renal failure was 33% in the bilateral CAKUT population.
[0067] Identification of Predictive Amniotic Fluid Peptides
[0068] The prospective cohort of 140 bilateral CAKUT fetuses was divided in independent training and validation sets (
[0069] The 98 peptides were included in a random forest mathematical model (called the ‘bCAKUTPep’ classifier), which was optimized for the classification of patients in the training cohort. Based on a cutoff score of 0.47, the bCAKUTPep classifier led to a prediction of postnatal renal outcome with a sensitivity of 78%, a specificity of 94% and an AUC of 0.92 (
[0070] Validation of the Peptide-Based Classifier in New Individuals
[0071] It is essential to confirm that predictive biomarkers are generalizable to ‘similar but different’ individuals outside the training set.sup.16,17. Therefore in the next step we blindly validated bCAKUTPep in the hold out validation set of 51 patients composed of 34 additional CAKUT control and 17 CAKUT case patients (data not shown). This resulted in prediction of postnatal renal function with 88% sensitivity, 97% specificity, an AUC of 0.96 (
[0072] Comparison with Clinical Parameters
[0073] The predictive efficacy of the bCAKUTPep classifier was next compared to the clinical parameters including routinely performed ultrasound-based clinical measurements and gestational age at the time of AF sampling. The presence of hyperechogenicity, absence of corticomedullary differentiation (dysplasia), or at least one nonfunctional kidney (MCDK or agenesis) failed to predict postnatal renal function (AUC: 0.60, 0.60 and 0.54, respectively, data not shown). Reduced AF volume (oligohydramnios or anhydramnios) or gestational age at sampling predicted postnatal renal outcome with 76% sensitivity and 91% specificity (AUC: 0.84) and 59% sensitivity and 82% specificity (AUC: 0.72), respectively. Both parameters were significantly inferior compared to the peptide-based classifier (
[0074] We next assessed whether the predictive performance of the peptide-based classifier could be improved by adding the clinical parameters showing the best individual performances. Combination of the peptides with either AF volume or gestational age, or both showed a slightly, but non-significant, increase in AUC (0.98, 0.97 and 0.97, respectively) compared to bCAKUTPep alone (0.96,
[0075] Robustness of the Peptide-Based Classifier
[0076] The 98 selected peptides behaved similarly well when using other mathematical approaches including support vector machine (SVM), a k-nearest neighbor (KNN) or linear models (
[0077] Application of the Peptide-Based Classifier in Specific CAKUT Scenarios
[0078] Among the 32 bilateral CAKUT pregnancies submitted to TOP for which we had definitive fetopathology description, 8 fetuses displayed a renal phenotype that appeared compatible with life (Table S5) in Supplementary Appendix). bCAKUTPep predicted normal postnatal renal function for 6 of them, thereby confirming fetopathology (
[0079] For 28 of the 60, fetopathology was inconclusive or not available (data not shown). The bCAKUTPep classifier predicted early renal failure for 9 patients while normal postnatal renal function was predicted for 19 patients (
[0080] Selection of Smallest Predictive Peptide Signatures
[0081] Signatures including one peptide (clusters 1P): The ability of each peptide reported in Table A to predict postnatal renal outcome in bilateral CAKUT was evaluated measuring AUC of the ROC curve from the validation set. A peptide was judged excellent when it was better in prediction than AF volume, a clinical routinely measured parameter. Considering that AUC>=0.95 was significantly superior to AUC of AF volume (0.84 [upper limit of the one-sided 95% CI: 0.95]), one peptide (ID: 31862) was selected (Table 2).
[0082] Signatures including two peptides (clusters 2P): mathematical models (random forest or support vector machine) combining together 2 peptides reported in Table A (except the peptide included in the Table 2) were developed. After optimization for the classification of patients in the training set, models were assessed for the prediction of postnatal renal outcome in bilateral CAKUT measuring AUC of the ROC curve from the validation set. A cluster 2P was judged excellent when it was better in prediction than AF volume, a clinical routinely measured parameter. Considering that AUC>=0.95 was significantly superior to AUC of AF volume (0.84 [upper limit of the one-sided 95% CI: 0.95]), 38 clusters 2P involving a total of 35 peptides were selected (Table 3).
[0083] Signatures including three peptides (clusters 3P): mathematical models (random forest or support vector machine) combining together 3 peptides reported in Table A (except the peptides included in both Tables 2-3) were developed. After optimization for the classification of patients in the training set, models were assessed for the prediction of postnatal renal outcome in bilateral CAKUT measuring AUC of the ROC curve from the validation set. A cluster 3P was judged excellent when it was better in prediction than AF volume, a clinical routinely measured parameter. Considering that AUC>=0.95 was significantly superior to AUC of AF volume (0.84 [upper limit of the one-sided 95% CI: 0.95]), 77 clusters 3P involving a total of 40 peptides were selected (Table 4).
[0084] Selection of Smallest Predictive Peptide Signatures Associated to Amniotic Fluid Volume
[0085] Signatures including one peptide and AF volume (clusters 1P+AF): each peptide reported in Table A was included with AF volume, a clinical routinely measured parameter, in mathematical models (random forest or support vector machine) which were optimized for the classification of patients in the training set. The efficacy of each cluster to predict the postnatal renal outcome in bilateral CAKUT was evaluated measuring AUC of the ROC curve from the validation set. A cluster 1P+AF was judged excellent when it was better in prediction than AF volume. Considering that AUC>=0.95 was significantly superior to AUC of AF volume (0.84 [upper limit of the one-sided 95% CI: 0.95]), 9 clusters 1P+AF thereby corresponding to 9 peptides were selected (Table 5).
[0086] Signatures including two peptides and AF volume (clusters 2P+AF): mathematical models (random forest or support vector machine) combining together 2 peptides reported in Table A (except the peptides included in the Table 5) as well as AF volume were developed. After optimization for the classification of patients in the training set, models were assessed for the prediction of the postnatal renal outcome in bilateral CAKUT by measuring AUC of the ROC curve from the validation set. A cluster 2P+AF was judged excellent when it was better in prediction than AF volume, a clinical routinely measured parameter. Considering that AUC>=0.95 was significantly superior to AUC of AF volume (0.84 [upper limit of the one-sided 95% CI: 0.95]), 865 clusters 2P+AF involving 86 peptides were selected (Table 6).
[0087] Thymosin-β4 Protein-Based Prediction
[0088] Thymosin-β4 alone: Quantification of thymosin-β4 was performed by meaning the abundance of its 3 fragments (peptide ID: 31862, 35677, 33930, reported in Table A). The ability of protein to predict postnatal renal outcome in bilateral CAKUT was evaluated measuring AUC of the ROC curve from the validation set. Compared to AF volume, thymosin-β4 showed an increasing trend in AUC, but without reaching statistical significance (0.94 versus 0.84, p=0.066) (Table 7).
[0089] Thymosin-β4 combined to AF volume (Thymosin-/34+AF): Quantification of thymosin-β4 was performed by meaning the abundance of its 3 fragments (peptide ID: 31862, 35677, 33930, reported in Table A). Thymosin-β4 was included with AF volume in a random forest model which was optimized for the classification of patients in the training set. The efficacy of Thymosin-β4+AF to predict the postnatal renal outcome in bilateral CAKUT was evaluated measuring AUC of the ROC curve from the validation set. Compared to AF volume alone, thymosin-β4+AF displayed a significant increase in AUC (0.95 versus 0.84; one-sided p value: 0.040) (data not shown).
[0090] Ac-SDPK Fragment-Based Prediction
[0091] N-acetyl-seryl-aspartyl-lysyl-proline (Ac-SDKP), a natural tetrapeptide released from thymosin-β4, was measured in amniotic fluid from a subset of patients using an enzyme-linked immunosorbent assay. Ac-SDKP was included with AF volume (Ac-SDKP+AF) in a support vector machine model and the efficacy of the model to predict the postnatal renal outcome in bilateral CAKUT was evaluated measuring AUC of the ROC curve in the same subset. Ac-SDKP+AF displayed a significant increase in AUC compared to AF volume alone (0.98 versus 0.86; one-sided p value: 0.042) (Table 8).
[0092] Discussion:
[0093] Unambiguous prenatal prediction of postnatal renal function in bilateral CAKUT, not attainable by conventional clinical and imaging parameters, would provide an evidence base for rational and ethically sound management of this challenging disorder. Using samples from the largest prospective bilateral CAKUT cohort followed to date, we developed and blindly validated a novel method for the prediction of postnatal renal function based on the analysis of peptides in amniotic fluid. Based on a numerical score with a clear-cut cutoff, the AF peptide-based classifier (bCAKUTPep) predicted postnatal renal function with high sensitivity and specificity, significantly outperforming ultrasound measures. Hence, the AF peptide-based classifier is an innovative methodology with disruptive potential for the pre- and postnatal management of bilateral CAKUT.
[0094] Counseling of parents-to-be with a fetus with bilateral CAKUT is emotion loaded as it often involves the consideration to terminate pregnancy in the face of a highly uncertain prognosis ranging from largely normal postnatal kidney function to perinatal death or life-long end-stage kidney disease. The AF peptide signature established in this study provides for the first time an unambiguous prediction of postnatal kidney function with much higher accuracy compared to conventional methods. In addition, the measurement of AF peptides is not subject to personal interpretation, which can be the case for sonographic imaging.sup.6,18 19 (e.g. an obstetrician versus pediatric nephrologist/urologist, a less versus a more experienced clinician). Hence, the AF peptide score provides unbiased information concerning the likely postnatal outcome to the parents.sup.20. In addition, in case a high-risk phenotype is diagnosed and continuation of pregnancy is decided, such clear-cut information will also give time to the future parents to psychologically accept.sup.21 the fact that they will have a child with chronic, potentially severe disease and decide whether they would like their newborn to be offered palliative care or dialysis.sup.22.
[0095] In our large scale prospective study 60 out of 140 (43%) CAKUT pregnancies were terminated. This rate is slightly lower than in previous European studies where the rate of pregnancy termination was 55-62%.sup.8,23-25, but close to a recent retrospective study from the US (45% (32/71)).sup.26. Irrespective of these differences, termination of pregnancy is still a major decision in CAKUT fetuses and in a number of cases, as exemplified by our study, fetopathology analysis revealed fetal kidneys with normal appearance. The added value of the AF peptide-based classifier in this context is evident from the fact that bCAKUTPep predicted a normal outcome for 6 out of the 8 terminated pregnancies in which fetopathology showed kidneys that appeared compatible with normal life. In 28 cases of pregnancy termination where fetopathology was absent (usually due to parental non-consent) or inconclusive (no definite status as to the severity of the renal lesions), the bCAKUTPep classifier predicted 9 fetuses (32%) with a severe outcome. This is very similar to the number of severe outcomes (34%) in our cohort for whom we had definitive outcome data, thereby confirming the high positive predictive value of the AF peptide classifier. Therefore, in case of absent or inconclusive fetopathology (nearly 50% of the terminated pregnancy cases studied) a severe AF peptide score might alleviate the psychological burden imposed on the parents after the decision to terminate pregnancy.
[0096] Postnatal events or interventions (e.g. urinary tract infections or obstruction-relieving interventions), can impact postnatal disease progression. However, among the 17 fetuses with severe disease in the validation set, twelve were terminated pregnancies and three deceased perinatally. Of the 2 life-born children, one had bilaterally enlarged hyperechogenic dysplastic microcystic kidneys without urinary tract anomalies, and the other had PUV but was free of urinary tract infections during follow-up. In addition, potentially outcome-changing prenatal interventions such as vesico-amniotic shunting in PUV were not performed in our study.sup.30.
[0097] We recently observed that the presence of specific urinary collagen peptides is related to the degree of in situ kidney fibrosis in adult CKD.sup.27 and that these peptides are predictive of disease progression.sup.28. Similarly, we speculate that a focus on the AF peptides may allow assessing the early underlying molecular changes of CAKUT such as connective tissue turnover (collagen fragments) leading to hypo/dysplasia and hyperechogenicity, inflammation (osteopontin, inter a trypsin inhibitor heavy chain H4) and repair (thymosin β4). As these early molecular modifications precede structural and functional changes, this may explain the excellent predictive capacity of the AF peptide signature as to postnatal renal function.
[0098] A limitation of our study is that we have not compared the AF peptides to the performance of serum β2-microglobulin. This would have required an additional invasive intervention for collecting fetal blood in our study while evidence in the literature for good predictive performance of serum β2-microglobulin is still lacking.sup.8,9. However comparison with published sensitivities and specificities showed that the AF peptide-based classifier performed much better than fetal serum β2-microglobulin, at least in the context of bilateral lower or upper urinary tract obstruction.sup.8 (64% sensitivity and 79% specificity for β2-microglobulin.sup.8 versus 86% sensitivity and 100% specificity for bCAKUTPep).
[0099] Another limitation might be that the analysis is mass spectrometry-based since it is currently impossible to simultaneously analyze 98 peptides using an antibody-based method. However, we have shown in previous studies that samples can be frozen in the clinic, shipped and analyzed in specialized laboratories equipped with CE-MS technology.sup.11,29 with a total turnaround time of less than one week, an acceptable timeframe for clinical decision-making in CAKUT pregnancies.
[0100] In conclusion, we firmly believe that the introduction of the bCAKUTPep classifier in the diagnostic workup of prenatally diagnosed CAKUT can provide a long-sought evidence base to the prenatal counseling process by delivering unbiased and unambiguous prognostic information that is currently unavailable.
[0101] Tables:
TABLE-US-00002 TABLE 1 Antenatal cohort characteristics of 140 CAKUT patients of which the amniotic fluid peptidome was analyzed. Gestational Amniotic Outcome.sup.γ Gender age fluid GFR < 60 N (f/m)¶ (w)¥ (n.a, n, o, a)§ GFR > 60 or death TOP Total cases 140 40/82 25.68 +/− 0.50 18, 68, 42, 12 69 11 60 Bilateral hyperechogenic kidneys normal size 17 4/12 26.06 +/− 1.29 2, 12, 3, 0 10 0 7 enlarged 23 14/8 27.35 +/− 1.30 4, 12, 7, 0 10 2 11 Lower urinary tract obstruction PUV 25 0/20 24.64 +/− 1.40 3, 3, 16, 3 5 4 16 others 4 1/2 17.50 +/− 1.19 1, 3, 0, 0 1 0 3 Abnormal solitary kidney* agenesis 9 2/7 27.44 +/− 1.40 3, 2, 3, 1 4 1 4 MCDK 12 6/5 28.17 +/− 1.11 1, 8, 3, 0 8 1 3 Upper urinary tract obstruction** 17 1/11 25.12 +/− 1.15 2, 14, 1, 0 15 1 1 Bilateral hypoplasia 10 4/6 25.00 +/− 1.56 1, 4, 4, 1 5 0 5 Nonfunctioning kidneys*** 8 3/5 20.75 +/− 1.77 0, 0, 1, 7 0 0 8 Non obstructive urinary tract anomalies**** 7 2/1 23.43 +/− 2.16 0, 6, 1, 0 7 0 0 Bilateral dysplasia 5 1/4 28.80 +/− 2.82 1, 3, 1, 0 3 1 1 One hypoplastic and one dysplastic kidney 3 2/1 33.67 +/− 2.73 0, 1, 2, 0 1 1 1 *One nonfunctional (agenesis or multicystic dysplastic kidney (MCDK)) kidney and one kidney with either ureteropelvic junction obstruction (UPJ) with parenchymal lesions or dysplasia or hypoplasia or hyperechogenecity or combinations thereof; **Bilateral UPJ with bilateral parenchymal lesions; ***Bilateral agenesis or MCDK; ****Vesicoureteral reflux, duplex collecting system, megaureter; ¶Gender of fetus, female/male (18 missing values); ¥Gestational age plus or minus standard error in weeks; §Amniotic fluid volume: n.a, not available; n, normal; o, oligoamnios; a, anhydramnios; .sup.γPost natal pregnancy outcome at two years: GFR > 60, normal renal function or moderately reduced renal function (eGFR > 60 ml/min/1.73 m.sup.2); GFR < 60 or death, eGFR < 60 ml/min/1.73 m.sup.2 or death due to renal dysfunction; TOP, termination of pregnancy; Abbreviation: PUV, posterior urethral valves.
TABLE-US-00003 TABLE A List of 98 peptides associated to CAKUT progression. Peptide ID 0.0342 0.0162 0.0375 0.02 0.0124 0.025 0.02 Mass (Da) UP UP UP DOWN DOWN DOWN DOWN calc. Mass (Da) 14.68 20.45 1.92 0.37 0.44 0.49 0.53 CE-time (min) 102.33 338.92 12.28 11.06 39.19 12.24 201.11 Sequence 6.97 16.57 6.41 29.58 88.17 25.01 378.97 Protein name H7C0L5 H7C0L5 P02452 P02452 P02452 P02452 P02452 Start AA 510 511 784 1071 725 455 843 Stop AA 501 499 766 1042 699 430 819 Protein Inter- Inter- Collagen Collagen Collagen Collagen Collagen Accession alpha- alpha- alpha- alpha- alpha- alpha- alpha- trypsin trypsin 1(1) 1(1) 1(1) 1(1) 1(1) inhibitor inhibitor chain chain chain chain chain
CAKUT PGPPDV GLPGP TGPIGP AGPGAGA ANGAG KGNSGE ADGQP control PDHA PDVPD GPAGA PGAPGVG NDGAK PGAGS GAKGE abundance (SEQ ID HAA GDKGES PAGKSGDR GDAGA KGDTGA GDAGA NO: (SEQ ID (SEQ GETGP GAGSQ KGEGP KGDAG 1) NO: 2) ID NO: 3) (SEQ GAG VG PGP ID NO: 4) (SEQ ID (SEQ ID (SEQ ID NO: 5) NO: 6) NO: 7) CAKUT ease abundance 26.565176 27.284883 30.896709 28.233681 33.505863 22.767244 26.843721 Fold change 1000.46141 1241.604051 1692.795494 2583.231357 2281.975133 2339.098946 2204.993418 Regulation 1000.474548 1241.570313 1692.774902 2583.199219 2281.983398 2339.0896 2204.994141 Ajusted p-value 2029 6400 15884 29894 25170 26070 23894 Peptide 0.032 0.0054 0.0084 0.0073 0.0039 0.0233 0.0027 ID Mass DOWN DOWN DOWN DOWN DOWN UP DOWN (Da) calc. 0.56 0.36 0.41 0.4 0.27 2.06 0.3 Mass (Da) CE-time 108.05 5.84 16.12 4.82 1.02 20.49 14.03 (min) Sequence 192.47 16.4 39.21 11.93 3.83 9.95 46.46 Protein P02452 P02452 P02452 P02452 P02452 P02452 P02452 name Start AA 1041 843 844 668 453 843 844 Stop AA 1010 819 819 650 432 820 819 Protein Accession Collagen Collagen Collagen Collagen Collagen Collagen Collagen alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain CAKUT GESGRE ADGQGAKGEG ADGQGAKGEG GPGEAGKGEQG NSGEPGAGSKG DGQPGAKGEPG ADGQPGAKGE control GAGAE DAGAKGDAGG DAGAKGDAGP VGDLG (SEQ DTGAKGEGP DAGAKGDAGPP GDAGAKGDAG abundance GSPGRD P (SEQ ID NO: GPA (SEQ ID ID NO: 11) (SEQ ID NO: G (SEQ ID NO: PGPA (SEQ ID GSGAK 9) NO: 10) 12) 13) NO: 14) GDRGET G (SEQ ID NO: 8) CAKUT 22.135977 26.984415 27.169418 31.024588 25.256365 27.232393 27.162773 ease abundance Fold 2999.320125 2236.983248 2292.025447 1765.811872 1997.892642 2117.96139 2276.030532 change Regulation 2999.301758 2236.985352 2292.017578 1765.781616 1997.903931 2117.951416 2276.014404 Ajusted 36283 24421 25301 17264 20643 22456 25060 p-value Peptide 0.0159 0.0058 0.0124 0.0014 0.0142 0.0025 0.0152 ID Mass DOWN DOWN DOWN DOWN DOWN DOWN DOWN (Da) calc. 0.51 0.37 0.6 0.46 0.37 0.25 0.54 Mass (Da) CE-time (min) 220.89 30.99 8.81 71.53 2.18 1.48 24.4 Sequence 436.2 83.56 14.74 156.08 5.94 6.01 45.16 Protein name P02452 P02452 P02452 P02452 P02452 P02452 P02452 Start AA 1041 558 453 843 249 453 453 Stop AA 1007 543 433 819 232 432 431 Protein Collagen alpha- Collagen alpha- Collagen alpha- Collagen alpha- Collagen alpha- Collagen alpha- Collagen alpha- Accession 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain CAKUT control GPGESGREGAG SGSGPDGKTGP SGEGAGSKGDT ADGQGAKGEG DGEAGKPGRGE NSGEGAGSKGD GN SGEG AGSKG abundance AEGSGRDGSPG GP (SEQ ID GAKGEGP (SEQ DAGAKGDAGP RGPPG (SEQ ID TGAKGEG DTGAKGEGP AKGDRGETG NO: 16) ID NO: 17) GP (SEQ ID NO: 19) (SEQ ID NO: (SEQ ID NO: (SEQ ID NO: NO: 18) 20) 21) 15) CAKUT 22.470945 29.067095 24.954149 26.930149 21.495632 25.364849 25.570875 ease abundance Fold 3266.442031 1451.652852 1899.844629 2220.988333 1761.839424 2029.882471 2070.90902 change Regulation 3266.443848 1451.652344 1899.85791 2220.989502 1761.844971 2029.893799 2070.918213 Ajusted 40022 11078 19221 24148 17207 21076 21684 p-value Peptide ID 0.033 0.0015 0.0284 0.0362 0.003 0.0173 0.008 Mass (Da) DOWN DOWN UP DOWN DOWN DOWN DOWN calc. 0.59 0.28 2.28 0.78 0.42 0.52 0.62 Mass (Da) CE-time 39.36 1.92 145.67 35.95 37.83 10.38 13.49 (min) Sequence 66.53 6.76 64,00 46.2 90.8 20.08 21.69 Protein name P02452 P02452 P02452 P02452 P02452 P02452 P02452 Start AA 453 249 725 249 1041 453 558 Stop AA 432 232 706 229 1020 430 543 Protein Collagen alpha- Collagen alpha- Collagen alpha- Collagen alpha- Collagen alpha- Collagen alpha- Collagen alpha- Accession 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain CAKUT NSGEGAGSKGD DGEAGKGRGER IXiAKGDAGAG NGDDGEAGKP AEGSGRDGSGA KGNSG EG AGS K SGSPGPDGKTG control TGAKGEGP GPPG (SEQ ID AGSQGAG GRPGERGGP KGDRGETGP GDTGAKGEGP PGP (SEQ ID abundance (SEQ ID NO: NO: 23) (SEQ ID NO: (SEQ ID NO: (SEQ ID NO: (SEQ ID NO: NO: 28) 22) 24) 25) 26) 27) CAKUT 25.325039 21.487492 30.508604 21.92091 22.061558 22.318043 28.999035 ease abundance Fold 2013.887556 1777.834339 1684.728871 2047.9291598259 2085.931152 2199.003983 1435.657937 change 4 Regulation 2013.894531 1777.841431 1684.706909 2047.929565 2085.929932 2199.00293 1435.65918 Ajusted 20863 17453 15732 21342 21938 23789 10786 p-value Peptide 0.0045 0.002 0.0074 0.0012 0.0014 0.0025 0.0011 ID Mass DOWN DOWN DOWN DOWN DOWN DOWN DOWN (Da) calc. 0.34 0.26 0.51 0.22 0.21 0.26 0.15 Mass (Da) CE-time 7.91 8.38 32.81 0.87 0.52 2.43 1.33 (min) Sequence 22.96 32.4 64.22 3.97 2.43 9.45 8.68 Protein name P02452 P02452 P02452 P02452 P02452 P02452 P02452 Start AA 854 1039 843 810 1039 668 453 Stop AA 815 1021 820 799 1023 650 431 Protein Accession Collagen Collagen Collagen Collagen Collagen Collagen Collagen alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain 1(I) chain CAKUT control GPGADGQPGAK EGSGRDGSGAK DGQGAKGEGD GDRGEGPGP SGRDGSGAKGD GPGEAGKGEQG GN SGEG AGSKG abundance GEGDAGAKGD GDRGET(SEQ AGAKGDAGPPG (SEQ ID NO: RGET (SEQ ID VPGDLG (SEQ DTGAKGEG AGPGPAGPAGP ID NO: 30) (SEQ ID NO: 32) NO: 33) ID NO: 34) (SEQ ID NO: GPIG (SEQ ID 31) 35) NO: 29) CAKUT ease 31.634048 21.453699 27.497255 27.132401 20.77614 30.881741 25.60898 abundance Fold 3416.586905 1860.819811 2149.951219 1179.51563 1674.755754 1749.816957 2086.903935 change Regulation 3416.559326 1860.830566 2149.956055 1179.521118 1674.767212 1749.778442 2086.921875 Ajusted 42122 18649 22992 5116 15510 17010 21956 p-value Peptide 0.0015 0.0023 0.0155 0.0014 0.0003 0.0033 0.0148 ID Mass DOWN DOWN DOWN DOWN DOWN DOWN UP (Da) calc. 0.41 0.43 0.59 0.42 0.19 0.43 2.07 Mass (Da) CE-time (min) 7.84 47.83 41.97 9.29 2.22 20.98 703.38 Sequence 19.04 111.32 70.73 22.18 11.81 48.99 340.06 Protein name P02452 P02452 P02452 P02452 P02452 P02452 P02452 Start AA 725 1041 810 451 249 455 249 Stop AA 705 1021 798 432 230 432 220 Protein Collagen Collagen Collagen Collagen Collagen Collagen Collagen Accession alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1(1) 1(1) 1(1) 10) 10) 1(1) 1(1) chain chain chain chain chain chain chain CAKUT control NDGAKGDAGA EGSGRDGSGAK AGDRGEGPGP NSGEGAGSKGD GDDGEAGKPGR NSGEGAGSKGD RGPGPGKNGDD abundance GAGSQGAG GDRGETGP (SEQ ID NO: TGAKGE (SEQ GERGPGP(SEQ TGAKGEGVG GEAGKPGRPGE (SEQ ID NO: (SEQ ID NO: 38) ID NO: 39) ID NO: 40) (SEQ ID NO: RGGP(SEQ ID 36) 37) 41) NO: 42) CAKUT 31.345865 21.935715 27.852589 24.56324 21.382504 26.061628 20.462645 ease abundance Fold 1798.771798 2014.894039 1250.552744 1859.813329 1933.887831 2185.972348 2923.392108 change Regulation 1798.77124 2014.900146 1250.55896 1859.821167 1933.879761 2185.972168 2923.399658 Ajusted 17760 20876 6600 18627 19732 23577 35226 p-value Peptide 0.0002 0.003 0.0002 0.0124 0.003 0.0009 0.0005 ID Mass DOWN UP DOWN DOWN DOWN DOWN DOWN (Da) calc. 0.01 10.06 0.15 0.79 0.38 0.52 0.3 Mass (Da) CE-time (min) 0.28 61.55 1.26 9.37 1.39 6.25 5.64 Sequence 26.16 6.12 8.13 11.82 3.61 11.91 18.98 Protein name P02452 P02452 P02452 P02452 P02452 P02452 P02452 Start AA 539 1061 249 668 719 558 455 Stop AA 510 1033 230 651 705 546 434 Protein Collagen Collagen Collagen Collagen Collagen Collagen Collagen Accession alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1(1) 1(1) 1(1) 10) 10) 1(1) 1(1) chain chain chain chain chain chain chain CAKUT ERGSG KGDRGE GDDGE PGEAGK NDGAKGDAGA SGPDGKTGPGP GEGAGSKGDTG control PAGPKG TGPAG AGKGRP GEQGV GAG (SEQ ID (SEQ ID NO: AKGEGPVG abundance SGEAGR PGAGAP GERGPG (SEQ GDLG NO: 47) 48) (SEQ ID NO: GEAGL GAGPV ID NO: 45) (SEQ ID 49) GAKG (SEQ ID GPAG (SEQ ID NO: 46) NO: 43) NO: 44) CAKUT 21.587481 27.791513 21.650738 31.285788 25.658968 26.928146 25.246342 ease abundance Fold 2761.337948 2496.199329 1949.882746 1708.790408 1285.553472 1194.551681 1968.90083951344 change Regulation 2761.337891 2496.107422 1949.892578 1708.764893 1285.565308 1194.550171 1968.904053 Ajusted 32876 28628 19950 16197 7437 5420 20228 p-value Peptide 0.0095 0.0014 0.0012 0.013 0.032 0.002 0.0041 ID Mass DOWN UP DOWN UP DOWN DOWN DOWN (Da) calc. 0.92 3.09 0.43 6.11 0.72 0.22 0.55 Mass (Da) CE-time (min) 24.41 270.26 3.27 1485.04 21.66 2.44 243.78 Sequence 26.47 87.58 7.64 243,00 30.07 11.07 441.98 Protein name P02452 P02452 P02452 P02458 P02458 P02461 P02461 Start AA 672 220 672 845 924 604 567 Stop AA 651 200 657 807 911 587 543 Protein Collagen Collagen Collagen Collagen Collagen Collagen Collagen Accession alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1(1) 1(1) 1(1) 1 (II) 1 (II) 1 (III) 1 (HI) chain chain chain chain chain chain chain CAKUT control PGEAGKGEQGV GFQGPGEGEPG KG EQGVGDLG GPGAGSAGARG NGNPGPGPGPS DGAGKNGERG GGGSDGKPGGS abundance GDLGAGP (SEQ ASGPMGR AGP (SEQ ID AGERGETGPPG G(SEQ ID NO: GGGGP (SEQ QGESGRPGPG ID NO: 50) (SEQ ID NO: NO: 52) PAGFAGPPGAD 54) ID NO: 55) (SEQ ID NO: 51) GQP (SEQ ID 56) NO: 53) CAKUT 32.408882 32.201748 29.42359 32.275494 38.04417 24.07135 26.285912 ease abundance Fold 2046.949428 2025.885054 1522.726351 3423.57491177906 1232.542179 1623.723726 2248.994481 change Regulation 2046.907471 2025.872437 1522.682129 3423.542969 1232.543213 1623.723877 2248.999268 Ajusted 21320 21028 12489 42214 6196 14475 24608 p-value Peptide 0.0012 0.001 0.0011 0.001 0.0004 0.0033 0.0001 ID Mass DOWN UP DOWN DOWN DOWN DOWN DOWN (Da) calc. 0.46 37.08 0.13 0.21 0.23 0.54 0.16 Mass (Da) CE-time (min) 37.22 289.13 1.77 4.51 1.03 176.73 5.06 Sequence 81.25 7.8 13.96 21.95 4.52 324.49 32.1 Protein name P02461 P02461 P02461 P02461 P02461 P02461 P02461 Start AA 687 1054 687 936 806 477 840 Stop AA 664 1042 662 899 796 448 816 Protein Collagen Collagen Collagen Collagen Collagen Collagen Collagen Accession alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1(111) 1(III) 1(III) 1(III) 1(111) 1(111) 1 (III) chain chain chain chain chain chain chain CAKUT control DAGAGAGGKG AGAGHPGPGP KG DAG AG AGG GKDGGPAGNT SGERGETGP ERGEAGIGVGA GQNGEGGKGE abundance DAGAGERGPG (SEQ ID NO: KG DAG AGERGP GAPGSGVSGPK (SEQ ID NO: KGEDGKDGSGE RGAGEKGEGGP (SEQ ID NO: 58) G (SEQ ID NO: GDAGQPGEKGS 61) GANG (SEQ ID G (SEQ ID NO: 57) 59) PG (SEQ ID NO: 62) 63) NO: 60) CAKUT 26.560427 26.254732 22.609119 25.760281 25.914463 24.373287 22.619993 ease abundance Fold 2078.925339 1155.530886 2264.041765 3356.550519 1114.489081 2825.269987 2323.042494 change Regulation 2078.930176 1155.545166 2264.031982 3356.513184 1114.492676 2825.259521 2323.053223 Ajusted 21830 4697 24856 41269 3917 33880 25800 p-value Peptide 0.0011 0.0009 0.0152 0.0316 0.0343 0.0011 0.0152 ID Mass UP DOWN DOWN DOWN UP DOWN DOWN (Da) calc. 23.51 0.22 0.5 0.52 3.04 0.08 0.44 Mass (Da) CE-time (min) 104.74 4.19 84.3 8.71 49.17 0.62 1.72 Sequence 4.46 18.94 167.38 16.81 16.18 7.88 3.9 Protein name P02462 P20849 P20908 P27658 Q14993 Q07092 Q9UMD9 Start AA 670 896 781 572 910 1368 680 Stop AA 658 858 753 560 851 1337 648 Protein Collagen Collagen Collagen Collagen Collagen Collagen Collagen Accession alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1 (IV) 1(IX) 1(V) l(VIII) 1 (XIX) 1 (XVI) l(XVII) chain chain chain chain chain chain chain CAKUT control GFGPQGDRGFP GLGDPGASYGR GMPGADGPPGH GPGPGPGPA GDPGPVGEPGAM PGGEPGTDGAA AAGEPGPHGGV abundance G (SEQ ID NO: NGRDGERGPGV PGKEGGEKGGQ (SEQ ID NO: GLPGLEGFPGVKG GKEGPGKQGFY PGSVGPKGSSG 64) AGIPGVPGPPGP GPG (SEQ ID 67) DRGPAGPGIAGMS GPGPKG (SEQ SPGQGPG (SEQ G(SEQ ID NO: NO: 66) GKPGAGPGVGEPG ID NO: 69) ID NO: 70) 65) ERGPV (SEQ ID NO: 68) CAKUT 28.127964 27.764822 23.563358 37.29739 27.883848 23.099014 29.346113 ease abundance Fold 1303.60355071375 3648.766935 2679.198343 1157.535303 5508.683078 3021.410444 2890.348178 change Regulation 1303.584106 3648.751221 2679.198242 1157.533813 5508.611816 3021.369141 2890.253174 Ajusted 7823 45055 31488 4727 64283 36627 34805 p-value Peptide 0.0076 0.0344 0.0115 0.0233 0.0152 0.0342 0.0041 ID Mass DOWN UP DOWN UP DOWN UP DOWN (Da) calc. 0.41 4.09 0.5 1.07 0.59 8.72 0.37 Mass (Da) CE-time 33.5 1647.51 5.46 19.58 4.55 1433.83 20.11 (min) Sequence 81.48 403.12 10.93 18.23 7.7 164.51 54.29 Protein Q9UMD9 P39060 P39060 Q96P44 Q17RW2 Q9BXS0 Q8IZC6 name Start 998 1437 1264 900 774 252 1050 AA Stop 975 1422 1252 879 747 220 1022 AA Protein Collagen Collagen Collagen Collagen Collagen Collagen Collagen Accession alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1(XVII) 1(XVIII) 1(XVIII) 1(XXI) 1(XXIV) 1(XXV) 1 (XXVII) chain chain chain chain chain chain chain CAKUT GIPSGS SVPGPG GMPGP GSQGF GKSGP PGVPG VPGPKG control EGGSSS PGPGPG GPGPG GYGEQ SGQTGD EPGKGE SGHPG abundance TMYVSG (SEQ ID (SEQ ID GPGPG PGLQGS QGLMG MPGGM GP NO: NO: PEGP GPGEG PLGPPG GTPGEP (SEQ ID 72) 73) (SEQ ID FG QKGSIG GPQGP NO: 71) NO: (SEQ ID APG (SEQ ID 74) NO: 75) (SEQ ID NO: 77) NO: 76) CAKUT 43.508652 39.228619 37.611717 44.165359 34.364258 30.763529 28.000504 ease abundance Fold 2264.974322 1426.672859 1161.512459 2112.902478 2582.1410128532 3082.521591 2696.214527 change 8 Regulation 2264.959473 1426.674927 1161.51001 2112.873535 2582.12793 3082.483398 2696.176025 Ajusted 24868 10640 4793 22377 29880 37566 31787 p-value Peptide 0.0364 0.0171 0.0171 0.0073 0.0214 0.0125 0.0012 ID Mass UP DOWN DOWN DOWN DOWN DOWN UP (Da) calc. 1.01 0.64 0.39 0.36 0.5 0.72 5.27 Mass (Da) CE-time 1.93 1.85 6.65 25.66 3.47 2.1 260.03 (min) Sequence 1.9 2.91 17.15 71.21 6.88 2.9 49.3 Protein P39060 Q2UY09 P08123 P08123 P08123 P08123 P08123 name Start 1412 726 76 863 64 157 863 AA Stop 1400 699 44 830 45 133 844 AA Protein Collagen Collagen Collagen Collagen Collagen Collagen Collagen Accession alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1 (XVIII) l(XXVIII) 2(1) 20) 20) 20) 20) chain chain chain chain chain chain chain CAKUT GPGP GPGPGY RGPPG RTGEVG GGPPGR GAGPG GEKGS control GPGPS GSQGI PGRDGE AVGPG DGEDG KAGED GEAGTA abundance (SEQ ID KGEQGQ DGPTGP FAGEK TGPGP GHGKP GPGTGP NO: GFPGK PGPGPP GPSGEA (SEQ ID GRGERG (SEQ ID 78) GT GPGLGG GTAGP NO: 82) (SEQ ID NO: 84) (SEQ ID N GTGP NO: 83) NO: 79) (SEQ ID (SEQ ID NO: 80) NO: 81) CAKUT 37.374866 29.034859 29.612068 29.84955 32.759037 19.830038 31.460758 ease abundance Fold 1173.530218 2712.277973 3011.412175 3063.453371 1873.81728238453 2398.137397 1767.791137 change Regulation 1173.522705 2712.178711 3011.371338 3063.40918 1873.863892 2398.145752 1767.921753 Ajusted 5019 32038 36447 37285 18837 27115 17301 p-value Peptide 0.0364 0.0171 0.0171 0.0073 0.0214 0.0125 0.0012 ID Mass UP DOWN DOWN DOWN DOWN DOWN UP (Da) calc. 1.01 0.64 0.39 0.36 0.5 0.72 5.27 Mass (Da) CE-time 1.93 1.85 6.65 25.66 3.47 2.1 260.03 (min) Sequence 1.9 2.91 17.15 71.21 6.88 2.9 49.3 Protein P39060 Q2UY09 P08123 P08123 P08123 P08123 P08123 name Start 1412 726 76 863 64 157 863 AA Stop 1400 699 44 830 45 133 844 AA Protein Collagen Collagen Collagen Collagen Collagen Collagen Collagen Accession alpha- alpha- alpha- alpha- alpha- alpha- alpha- 1(XVIII) 1(XXVIII) 2(I) 2(I} 2(I) 2(I) 2(I) chain chain chain chain chain chain chain CAKUT GPGPG GPGPGY RGPPGP RTGEVG GGPPGR GAGPG GEKGSG control PGPS GSQGI GRDGE AVGPG DGEDG KAGED EAGTA abundance (SEQ ID KGEQGQ DGPTGP FAGEKG TGPGP GHGKP GPGTGP NO: 78) GFPGK PGPGPP PSGEA (SEQ ID GRGERG (SEQ ID GT(SEQ ID GPGLGG GTAGPG NO: 82) (SEQ ID NO: 84) NO: 79) N TGP NO: 83) (SEQ ID (SEQ ID NO: 80) NO: 81) CAKUT 37.374866 29.034859 29.612068 29.84955 32.759037 19.830038 31.460758 ease abundance Fold 1173.530218 2712.277973 3011.412175 3063.453371 1873.81728238453 2398.137397 1767.791137 change Regulation 1173.522705 2712.178711 3011.371338 3063.40918 1873.863892 2398.145752 1767.921753 Ajusted 5019 32038 36447 37285 18837 27115 17301 p-value Peptide 0.0014 0.0056 0.0316 0.0375 0.002 0.0059 0.0081 ID Mass DOWN UP DOWN DOWN DOWN UP DOWN (Da) calc. 0.2 4.44 0.54 0.68 0.35 32.04 0.64 Mass (Da) CE-time 3.76 130.65 34.96 119.22 4.13 213.38 1.52 (min) Sequence 18.42 29.41 64.35 176.35 11.68 6.66 2.37 Protein P08123 P08123 P29400 A8TX70 P02671 P02671 P04792 name Start 865 58 0 1514 253 270 202 AA Stop 831 45 0 1494 239 260 190 AA Protein Collagen Collagen Collagen Collagen Fibrinogen Fibrinogen Heat Accession alpha- alpha- alpha- alpha- alpha alpha shock 2(I) 2(I) 5(IV) 5(VI) chain chain protein chain chain chain chain beta-1 CAKUT TGEVGA GPGPGR QGPGP GSGSR SQLQKV ELERPG QLGGPE control VGPGF DGEDG PGSGPA GAPGQY PPEWK GNEIT AAKSD abundance AGEKGP P LEGPKG GEKGF ALTD (SEQ ID ET(SEQ ID SGEAG (SEQ ID NPGPQ GDP (SEQ ID NO: NO: 91) TAGPGT NO: 86) GPGRPG (SEQ ID NO: 89) 90) GPQG (SEQ ID NO: 88) (SEQ ID NO: 87) NO: 85) CAKUT 35.931652 27.881477 29.384726 24.300045 24.81127 27.906155 25.732746 ease abundance Fold 3092.432302 1335.56778411219 2968.44209927906 2048.918797 1738.92293424 1213.593881 1301.609925 change Regulation 3092.397705 1335.581543 2968.404053 2048.921143 1738.765259 1213.546631 1301.55603 Ajusted 37690 8721 35853 21353 16805 5781 7778 p-value Peptide 0.014 0.025 0.0053 0.0214 0.0012 0.0027 0.0001 ID Mass DOWN UP DOWN UP UP UP UP (Da) calc. 0.33 7.65 0.46 2.8 35.45 45.29 55.99 Mass (Da) CE-time 3.92 37.54 6.03 52.66 1387.42 1883.79 2172.29 (min) Sequence 11.93 4.91 13.13 18.78 39.14 41.59 38.8 Protein A6NCF5 P10451 Q9UHG2 Q6UWH4 P62328 P62328 P62328 name Start 448 290 238 67 44 44 44 AA Stop 424 279 223 52 19 20 21 AA Protein Kelch- Osteopontin ProSAAS Protein Thymosin Thymosin Thymosin Accession like FAM198B beta-4 beta-4 beta-4 protein 33 CAKUT control abundance GGLGET HSHEDM DHDVGS VSQVGR KKTETQ KTETQE TETQEK EDLLS LVVDPK ELPPE ASLQH EKNPL KNPLPS NPLPSK FEAYEL (SEQ ID GVLGA GQAAE PSKETI KETIEQ ETIEQE RTDSWT NO: 93) (SEQ ID (SEQ ID EQEKQA EKQAG KQAGES HL NO: 94) NO: 95) GES ES (SEQ ID (SEQ ID (SEQ ID (SEQ ID NO: 98) NO: 92) NO: 96) NO: 97) CAKUT 28.751198 20.33337 32.732773 22.598106 20.566191 21.706392 23.781242 ease abundance Fold 2838.334819 1405.666 1590.752566 1636.828131 2956.498925 2828.403962 2700.308999 change Regulation 2838.275879 1405.670044 1590.760742 1636.734863 2956.472412 2828.383301 2700.289795 Ajusted 34055 10250 13891 14735 35677 33930 31862 p-value
indicates data missing or illegible when filed
TABLE-US-00004 TABLE 2 Clusters 1P List of peptides Cluster AUC 31862 31862 0.95
TABLE-US-00005 TABLE 3 Clusters 2P List of peptides Cluster AUC 4697, 5420, 6196, 6400, 6600, 4697-6196 0.96 7437, 8721, 15510, 17010, 5420-6196 0.95 17207, 17264, 19221, 20228, 6196-19221 0.95 21320, 21342, 21353, 21684, 6196-20228 0.98 21830, 22456, 23894, 24856, 6196-21684 0.98 24868, 26070, 27115, 29894, 6196-32876 0.95 31787, 32876, 33930, 34055, 6196-33930 0.96 35853, 36447, 36627, 41269, 6196-45055 0.95 42122, 45055 6196-6400 0.96 6196-6600 0.96 6196-7437 0.96 6196-8721 0.98 6400-33930 0.96 7437-17264 0.95 7437-21830 0.97 7437-23894 0.96 7437-36447 0.97 8721-17010 0.95 8721-17207 0.95 8721-21342 0.95 8721-21353 0.97 8721-27115 0.95 8721-31787 0.95 8721-35853 0.96 8721-42122 0.96 15510-29894 0.95 15510-33930 0.95 15510-36447 0.95 21320-34055 0.96 21320-41269 0.96 21342-21830 0.95 22456-33930 0.96 24856-36447 0.95 24868-36447 0.96 24868-45055 0.95 26070-36447 0.95 27115-36447 0.96 36447-36627 0.96
TABLE-US-00006 TABLE 4 Clusters 3P List of peptides Cluster AUC 2029, 4727, 5019, 5116, 4727-25800-64283 0.95 5781, 7823, 10250, 10640, 5019-17301-18649 0.95 11078, 14475, 15732, 5019-17453-22992 0.95 16805, 17301, 17453, 5019-18649-37566 0.95 18627, 18649, 18837, 5116-18627-29880 0.95 20863, 20876, 21028, 5781-25060-25800 0.96 21956, 22377, 22992, 5781-25800-40022 0.95 23789, 24148, 24608, 7823-25800-40022 0.95 25060, 25800, 29880, 10250-25060-25800 0.95 31488, 32038, 33880, 10640-25060-25800 0.95 34805, 35226, 35677, 10640-25060-35677 0.95 36283, 37285, 37566, 11078-16805-17453 0.96 40022, 64283 11078-17453-21028 0.95 11078-17453-24148 0.96 11078-17453-31488 0.97 11078-17453-35677 0.96 11078-17453-37285 0.95 11078-18649-25800 0.97 11078-18649-35677 0.95 11078-25060-25800 0.95 11078-25060-35677 0.95 14475-16805-25060 0.95 14475-17453-37566 0.95 14475-20863-35677 0.95 14475-22992-35677 0.95 14475-23789-35677 0.95 14735-17453-22992 0.95 14735-25060-25800 0.96 14735-25800-40022 0.95 15732-25060-35677 0.95 16805-17453-22992 0.95 16805-20876-25800 0.95 16805-25800-64283 0.95 17301-23789-35677 0.95 17301-25060-25800 0.95 17453-22992-25060 0.95 17453-22992-35677 0.97 17453-24148-31488 0.95 17453-24148-35677 0.95 17453-25060-31488 0.97 17453-25800-40022 0.95 17453-31488-37566 0.96 18627-23789-31488 0.95 18627-25060-25800 0.95 18649-25060-35677 0.95 18649-25800-40022 0.95 18649-31488-35677 0.95 18837-23789-25800 0.95 18837-25060-25800 0.95 2029-5019-18649 0.95 20863-25060-25800 0.95 21956-25060-31488 0.95 21956-35677-36283 0.95 22377-25060-25800 0.95 22377-25060-35677 0.95 22992-35677-36283 0.96 23789-25800-37566 0.95 23789-25800-40022 0.96 23789-32038-35677 0.95 24148-25060-25800 0.95 24148-25800-40022 0.95 24608-25060-31488 0.98 24608-25060-32038 0.95 24608-29880-32038 0.95 24608-31488-34805 0.95 25060-25800-33880 0.95 25060-25800-34805 0.96 25060-25800-35226 0.96 25060-25800-35677 0.95 25060-25800-37285 0.95 25060-25800-37566 0.95 25060-25800-40022 0.95 25060-25800-64283 0.96 25060-31488-35677 0.96 25060-35677-36283 0.97 25800-35226-40022 0.95 25800-40022-64283 0.97
TABLE-US-00007 TABLE 5 Clusters 1P + AF List of peptides Cluster AUC 4727, 6400, 6600, 10786, 17760, 4727 + AF 0.96 21342, 21684, 31862, 45055 6400 + AF 0.95 6600 + AF 0.95 10786 + AF 0.95 17760 + AF 0.95 21342 + AF 0.96 21684 + AF 0.96 31862 + AF 0.96 45055 + AF 0.96
TABLE-US-00008 TABLE 6 Clusters 2P + AF List of peptides Cluster AUC 2029, 3917, 4697, 4793, 2029-18627 + AF 0.96 5019, 5116, 5420, 5781, 2029-20228 + AF 0.95 6196, 7437, 7823, 8721, 2029-21320 + AF 0.96 10250, 10640, 11078, 2029-21830 + AF 0.95 13891, 14475, 14735, 2029-23894 + AF 0.95 15510, 15732, 15884, 2029-25800 + AF 0.95 16197, 16805, 17010, 2029-27115 + AF 0.96 17207, 17264, 17301, 2029-31488 + AF 0.95 17453, 18627, 18649, 2029-34055 + AF 0.96 18837, 19221, 19732, 2029-36283 + AF 0.95 19950, 20228, 20643, 2029-3917 + AF 0.95 20863, 20876, 21028, 2029-5019 + AF 0.96 21076, 21320, 21353, 2029-5116 + AF 0.95 21830, 21938, 21956, 2029-8721 + AF 0.96 22377, 22456, 22992, 3917-11078 + AF 0.95 23577, 23789, 23894, 3917-15732 + AF 0.95 24148, 24421, 24608, 3917-16805 + AF 0.95 24856, 24868, 25060, 3917-17301 + AF 0.95 25170, 25301, 25800, 3917-19221 + AF 0.95 26070, 27115, 28628, 3917-20228 + AF 0.96 29880, 29894, 31488, 3917-20863 + AF 0.95 31787, 32038, 32876, 3917-21028 + AF 0.95 33930, 34055, 34805, 3917-21353 + AF 0.95 35226, 35677, 35853, 3917-21830 + AF 0.95 36283, 36447, 36627, 3917-23789 + AF 0.95 37285, 37566, 37690, 3917-27115 + AF 0.95 40022, 41269, 42122, 3917-35677 + AF 0.95 42214, 64283. 3917-7823 + AF 0.95 4697-10250 + AF 0.95 4697-11078 + AF 0.97 4697-13891 + AF 0.95 4697-14475 + AF 0.95 4697-16805 + AF 0.96 4697-17010 + AF 0.96 4697-17207 + AF 0.95 4697-18627 + AF 0.96 4697-18649 + AF 0.95 4697-18837 + AF 0.96 4697-19221 + AF 0.95 4697-20228 + AF 0.97 4697-20643 + AF 0.95 4697-21320 + AF 0.96 4697-21830 + AF 0.96 4697-21956 + AF 0.97 4697-23789 + AF 0.96 4697-23894 + AF 0.97 4697-24856 + AF 0.95 4697-25800 + AF 0.97 4697-26070 + AF 0.95 4697-27115 + AF 0.97 4697-29880 + AF 0.95 4697-29894 + AF 0.95 4697-31488 + AF 0.96 4697-34055 + AF 0.95 4697-34805 + AF 0.95 4697-35677 + AF 0.95 4697-35853 + AF 0.96 4697-36283 + AF 0.96 4697-36627 + AF 0.96 4697-40022 + AF 0.95 4697-41269 + AF 0.96 4697-42122 + AF 0.96 4697-5019 + AF 0.96 4697-5116 + AF 0.95 4697-5781 + AF 0.95 4697-6196 + AF 0.95 4697-7823 + AF 0.95 4697-8721 + AF 0.95 4793-20228 + AF 0.96 4793-27115 + AF 0.96 4793-7437 + AF 0.95 4793-8721 + AF 0.95 5019-10250 + AF 0.95 5019-10640 + AF 0.96 5019-11078 + AF 0.98 5019-14475 + AF 0.95 5019-14735 + AF 0.95 5019-15510 + AF 0.96 5019-16805 + AF 0.97 5019-17207 + AF 0.95 5019-17264 + AF 0.95 5019-17301 + AF 0.97 5019-18627 + AF 0.95 5019-18649 + AF 0.95 5019-18837 + AF 0.97 5019-19221 + AF 0.95 5019-19950 + AF 0.96 5019-20228 + AF 0.95 5019-20643 + AF 0.97 5019-20876 + AF 0.95 5019-21028 + AF 0.96 5019-21076 + AF 0.96 5019-21320 + AF 0.97 5019-21956 + AF 0.95 5019-22456 + AF 0.95 5019-23789 + AF 0.96 5019-23894 + AF 0.97 5019-24421 + AF 0.95 5019-24856 + AF 0.95 5019-24868 + AF 0.96 5019-25060 + AF 0.96 5019-25170 + AF 0.96 5019-25301 + AF 0.95 5019-26070 + AF 0.97 5019-27115 + AF 0.96 5019-28628 + AF 0.95 5019-31488 + AF 0.97 5019-31787 + AF 0.95 5019-32038 + AF 0.96 5019-33930 + AF 0.95 5019-34055 + AF 0.96 5019-34805 + AF 0.95 5019-35226 + AF 0.95 5019-35677 + AF 0.96 5019-35853 + AF 0.96 5019-36283 + AF 0.96 5019-36447 + AF 0.96 5019-36627 + AF 0.96 5019-37566 + AF 0.96 5019-40022 + AF 0.97 5019-41269 + AF 0.96 5019-42122 + AF 0.96 5019-42214 + AF 0.95 5019-5781 + AF 0.97 5019-6196 + AF 0.95 5019-7437 + AF 0.95 5019-7823 + AF 0.95 5019-8721 + AF 0.97 5116-16805 + AF 0.96 5116-17264 + AF 0.95 5116-18627 + AF 0.96 5116-18837 + AF 0.97 5116-21320 + AF 0.96 5116-21956 + AF 0.95 5116-22456 + AF 0.95 5116-27115 + AF 0.95 5116-29880 + AF 0.96 5116-33930 + AF 0.95 5116-34805 + AF 0.95 5116-35677 + AF 0.95 5116-35853 + AF 0.96 5116-36627 + AF 0.95 5116-37566 + AF 0.96 5116-40022 + AF 0.95 5116-41269 + AF 0.95 5116-42122 + AF 0.96 5116-7437 + AF 0.96 5420-11078 + AF 0.96 5420-16805 + AF 0.96 5420-17010 + AF 0.95 5420-18627 + AF 0.96 5420-18649 + AF 0.95 5420-20228 + AF 0.95 5420-20643 + AF 0.95 5420-22377 + AF 0.96 5420-23894 + AF 0.95 5420-24856 + AF 0.95 5420-27115 + AF 0.95 5420-35853 + AF 0.95 5420-36627 + AF 0.95 5420-37566 + AF 0.95 5420-5781 + AF 0.95 5420-6196 + AF 0.95 5420-7437 + AF 0.95 5781-14475 + AF 0.95 5781-15732 + AF 0.95 5781-17010 + AF 0.96 5781-17264 + AF 0.95 5781-18627 + AF 0.95 5781-18837 + AF 0.95 5781-19221 + AF 0.96 5781-19950 + AF 0.95 5781-20228 + AF 0.96 5781-21320 + AF 0.95 5781-22456 + AF 0.95 5781-23577 + AF 0.95 5781-24856 + AF 0.95 5781-25060 + AF 0.96 5781-25800 + AF 0.96 5781-27115 + AF 0.96 5781-31488 + AF 0.96 5781-34055 + AF 0.95 5781-35853 + AF 0.95 5781-36283 + AF 0.96 5781-36627 + AF 0.96 5781-42122 + AF 0.95 5781-7437 + AF 0.95 5781-8721 + AF 0.97 6196-11078 + AF 0.95 6196-20228 + AF 0.97 6196-21320 + AF 0.96 6196-27115 + AF 0.96 6196-31488 + AF 0.95 6196-33930 + AF 0.95 6196-35853 + AF 0.95 6196-42122 + AF 0.95 6196-7437 + AF 0.95 6196-8721 + AF 0.97 7437-11078 + AF 0.97 7437-13891 + AF 0.95 7437-14475 + AF 0.96 7437-15510 + AF 0.95 7437-15884 + AF 0.95 7437-16805 + AF 0.97 7437-17010 + AF 0.96 7437-17207 + AF 0.96 7437-17264 + AF 0.96 7437-17301 + AF 0.96 7437-18627 + AF 0.95 7437-18649 + AF 0.96 7437-18837 + AF 0.96 7437-19221 + AF 0.95 7437-20228 + AF 0.97 7437-20643 + AF 0.95 7437-20863 + AF 0.95 7437-20876 + AF 0.96 7437-21320 + AF 0.96 7437-21830 + AF 0.97 7437-21938 + AF 0.95 7437-22456 + AF 0.95 7437-23789 + AF 0.96 7437-23894 + AF 0.97 7437-24148 + AF 0.96 7437-24421 + AF 0.95 7437-24608 + AF 0.95 7437-24856 + AF 0.95 7437-24868 + AF 0.95 7437-25060 + AF 0.96 7437-25170 + AF 0.96 7437-25301 + AF 0.95 7437-27115 + AF 0.96 7437-29894 + AF 0.96 7437-31488 + AF 0.95 7437-31787 + AF 0.95 7437-34055 + AF 0.95 7437-35226 + AF 0.95 7437-35677 + AF 0.95 7437-35853 + AF 0.96 7437-36283 + AF 0.95 7437-36447 + AF 0.96 7437-36627 + AF 0.96 7437-37566 + AF 0.95 7437-40022 + AF 0.96 7437-41269 + AF 0.96 7437-42122 + AF 0.96 7437-42214 + AF 0.95 7437-8721 + AF 0.95 7823-11078 + AF 0.95 7823-14475 + AF 0.95 7823-16197 + AF 0.96 7823-17010 + AF 0.95 7823-17301 + AF 0.95 7823-18627 + AF 0.95 7823-18837 + AF 0.95 7823-20228 + AF 0.95 7823-21320 + AF 0.96 7823-23894 + AF 0.95 7823-25800 + AF 0.96 7823-27115 + AF 0.95 7823-31488 + AF 0.95 7823-32038 + AF 0.95 7823-34055 + AF 0.98 7823-36627 + AF 0.95 7823-8721 + AF 0.95 8721-10250 + AF 0.96 8721-11078 + AF 0.98 8721-13891 + AF 0.97 8721-14475 + AF 0.95 8721-15510 + AF 0.95 8721-15732 + AF 0.97 8721-15884 + AF 0.96 8721-16197 + AF 0.95 8721-16805 + AF 0.98 8721-17010 + AF 0.97 8721-17207 + AF 0.95 8721-17264 + AF 0.96 8721-17301 + AF 0.96 8721-18627 + AF 0.97 8721-18649 + AF 0.95 8721-18837 + AF 0.96 8721-19221 + AF 0.96 8721-19950 + AF 0.95 8721-20228 + AF 0.97 8721-20643 + AF 0.96 8721-20876 + AF 0.97 8721-21076 + AF 0.95 8721-21320 + AF 0.97 8721-21830 + AF 0.96 8721-21956 + AF 0.95 8721-22377 + AF 0.95 8721-22456 + AF 0.95 8721-22992 + AF 0.95 8721-23577 + AF 0.95 8721-23789 + AF 0.97 8721-23894 + AF 0.96 8721-24148 + AF 0.96 8721-24421 + AF 0.97 8721-24856 + AF 0.97 8721-25060 + AF 0.96 8721-25170 + AF 0.97 8721-25301 + AF 0.96 8721-26070 + AF 0.96 8721-27115 + AF 0.97 8721-29880 + AF 0.97 8721-31787 + AF 0.95 8721-32038 + AF 0.95 8721-34055 + AF 0.95 8721-34805 + AF 0.97 8721-35677 + AF 0.95 8721-35853 + AF 0.95 8721-36283 + AF 0.96 8721-36447 + AF 0.95 8721-36627 + AF 0.95 8721-37285 + AF 0.96 8721-37566 + AF 0.96 8721-40022 + AF 0.96 8721-41269 + AF 0.96 8721-42122 + AF 0.97 8721-42214 + AF 0.96 10250-11078 + AF 0.95 10250-16805 + AF 0.95 10250-17010 + AF 0.95 10250-18627 + AF 0.96 10250-19950 + AF 0.95 10250-21320 + AF 0.97 10250-21956 + AF 0.96 10250-25060 + AF 0.95 10250-27115 + AF 0.95 10250-34055 + AF 0.96 10250-36447 + AF 0.95 10250-40022 + AF 0.95 10640-18837 + AF 0.95 10640-20228 + AF 0.95 10640-21320 + AF 0.95 10640-25800 + AF 0.95 11078-13891 + AF 0.95 11078-14475 + AF 0.96 11078-14735 + AF 0.95 11078-15510 + AF 0.96 11078-15732 + AF 0.95 11078-16805 + AF 0.96 11078-17010 + AF 0.97 11078-17264 + AF 0.97 11078-17301 + AF 0.96 11078-17453 + AF 0.96 11078-18649 + AF 0.95 11078-18837 + AF 0.98 11078-19221 + AF 0.96 11078-19950 + AF 0.96 11078-20228 + AF 0.97 11078-20643 + AF 0.97 11078-20876 + AF 0.96 11078-21028 + AF 0.96 11078-21076 + AF 0.96 11078-21320 + AF 0.97 11078-21353 + AF 0.95 11078-21830 + AF 0.97 11078-21956 + AF 0.96 11078-22377 + AF 0.95 11078-22456 + AF 0.95 11078-22992 + AF 0.95 11078-23577 + AF 0.95 11078-23789 + AF 0.96 11078-23894 + AF 0.97 11078-24148 + AF 0.96 11078-24421 + AF 0.96 11078-24608 + AF 0.95 11078-24856 + AF 0.97 11078-24868 + AF 0.96 11078-25060 + AF 0.97 11078-25170 + AF 0.96 11078-25301 + AF 0.96 11078-25800 + AF 0.97 11078-26070 + AF 0.96 11078-27115 + AF 0.97 11078-29880 + AF 0.97 11078-29894 + AF 0.97 11078-31488 + AF 0.96 11078-31787 + AF 0.95 11078-32038 + AF 0.95 11078-32876 + AF 0.96 11078-33930 + AF 0.96 11078-34055 + AF 0.97 11078-34805 + AF 0.97 11078-35677 + AF 0.97 11078-36283 + AF 0.95 11078-36447 + AF 0.96 11078-36627 + AF 0.97 11078-37285 + AF 0.96 11078-37566 + AF 0.95 11078-37690 + AF 0.95 11078-40022 + AF 0.96 11078-41269 + AF 0.96 11078-42122 + AF 0.98 11078-42214 + AF 0.96 13891-17301 + AF 0.95 13891-21320 + AF 0.97 14475-16805 + AF 0.95 14475-17264 + AF 0.96 14475-17301 + AF 0.95 14475-18837 + AF 0.95 14475-19221 + AF 0.95 14475-20228 + AF 0.96 14475-20643 + AF 0.95 14475-20863 + AF 0.95 14475-21076 + AF 0.95 14475-21320 + AF 0.96 14475-23789 + AF 0.95 14475-23894 + AF 0.96 14475-24421 + AF 0.95 14475-24856 + AF 0.95 14475-25060 + AF 0.95 14475-25170 + AF 0.95 14475-27115 + AF 0.97 14475-29894 + AF 0.95 14475-33930 + AF 0.95 14475-34055 + AF 0.96 14475-34805 + AF 0.95 14475-35677 + AF 0.95 14475-35853 + AF 0.95 14475-36283 + AF 0.95 14475-36627 + AF 0.96 14475-37566 + AF 0.96 14475-40022 + AF 0.95 14475-41269 + AF 0.95 14475-42214 + AF 0.95 14735-17264 + AF 0.95 14735-20876 + AF 0.95 14735-21320 + AF 0.95 14735-27115 + AF 0.95 14735-32038 + AF 0.95 14735-36447 + AF 0.96 14735-42122 + AF 0.95 15510-27115 + AF 0.95 15510-41269 + AF 0.95 15510-42122 + AF 0.95 15732-17010 + AF 0.95 15732-20228 + AF 0.96 15732-21320 + AF 0.95 15732-21830 + AF 0.95 15732-23894 + AF 0.95 15732-25060 + AF 0.95 15732-25170 + AF 0.95 15732-27115 + AF 0.95 15732-35677 + AF 0.95 15732-36283 + AF 0.95 15732-36627 + AF 0.96 16197-17301 + AF 0.95 16197-21320 + AF 0.96 16805-17010 + AF 0.96 16805-17264 + AF 0.95 16805-19221 + AF 0.98 16805-20228 + AF 0.97 16805-20863 + AF 0.95 16805-21320 + AF 0.96 16805-21353 + AF 0.95 16805-21956 + AF 0.95 16805-22456 + AF 0.95 16805-24148 + AF 0.95 16805-24421 + AF 0.96 16805-25060 + AF 0.95 16805-25800 + AF 0.97 16805-27115 + AF 0.97 16805-29880 + AF 0.96 16805-29894 + AF 0.95 16805-31488 + AF 0.95 16805-32038 + AF 0.97 16805-34805 + AF 0.95 16805-36627 + AF 0.96 16805-41269 + AF 0.95 16805-42122 + AF 0.95 17010-17301 + AF 0.95 17010-18837 + AF 0.97 17010-20228 + AF 0.96 17010-20863 + AF 0.96 17010-21830 + AF 0.95 17010-22456 + AF 0.95 17010-23789 + AF 0.95 17010-24856 + AF 0.95 17010-27115 + AF 0.95 17010-35853 + AF 0.95 17010-36627 + AF 0.95 17010-37566 + AF 0.95 17010-42214 + AF 0.95 17207-17301 + AF 0.96 17207-18837 + AF 0.96 17207-21320 + AF 0.97 17207-23577 + AF 0.95 17207-25301 + AF 0.95 17207-27115 + AF 0.95 17207-29880 + AF 0.96 17207-34055 + AF 0.96 17207-35853 + AF 0.95 17207-36627 + AF 0.96 17207-37566 + AF 0.95 17207-41269 + AF 0.95 17207-42122 + AF 0.96 17264-18837 + AF 0.96 17264-19221 + AF 0.95 17264-20228 + AF 0.95 17264-20863 + AF 0.95 17264-21320 + AF 0.96 17264-21956 + AF 0.95 17264-23577 + AF 0.95 17264-23789 + AF 0.95 17264-24421 + AF 0.95 17264-25060 + AF 0.95 17264-25800 + AF 0.95 17264-26070 + AF 0.95 17264-27115 + AF 0.96 17264-31488 + AF 0.95 17264-32038 + AF 0.96 17264-34055 + AF 0.95 17264-34805 + AF 0.96 17264-35853 + AF 0.95 17264-36283 + AF 0.95 17264-36627 + AF 0.96 17264-40022 + AF 0.95 17301-18649 + AF 0.95 17301-18837 + AF 0.96 17301-20228 + AF 0.96 17301-20876 + AF 0.95 17301-21320 + AF 0.97 17301-21830 + AF 0.96 17301-21956 + AF 0.95 17301-22377 + AF 0.96 17301-23577 + AF 0.95 17301-23789 + AF 0.95 17301-23894 + AF 0.96 17301-24421 + AF 0.95 17301-24856 + AF 0.95 17301-25060 + AF 0.95 17301-25800 + AF 0.97 17301-26070 + AF 0.96 17301-27115 + AF 0.96 17301-34805 + AF 0.95 17301-35853 + AF 0.95 17301-36627 + AF 0.96 17301-40022 + AF 0.95 17301-42214 + AF 0.95 17453-31488 + AF 0.95 18627-19221 + AF 0.96 18627-19950 + AF 0.96 18627-20228 + AF 0.96 18627-21076 + AF 0.95 18627-21320 + AF 0.96 18627-21956 + AF 0.95 18627-25060 + AF 0.95 18627-25800 + AF 0.95 18627-27115 + AF 0.95 18627-29880 + AF 0.95 18627-29894 + AF 0.95 18627-32038 + AF 0.96 18627-33930 + AF 0.95 18627-34055 + AF 0.97 18627-34805 + AF 0.95 18627-35226 + AF 0.96 18627-35677 + AF 0.95 18627-35853 + AF 0.97 18627-36627 + AF 0.96 18627-41269 + AF 0.95 18627-42122 + AF 0.95 18649-21320 + AF 0.95 18649-29894 + AF 0.95 18837-19950 + AF 0.95 18837-20876 + AF 0.95 18837-21076 + AF 0.95 18837-21320 + AF 0.95 18837-22456 + AF 0.95 18837-23577 + AF 0.95 18837-25060 + AF 0.96 18837-25301 + AF 0.95 18837-25800 + AF 0.96 18837-27115 + AF 0.96 18837-31488 + AF 0.95 18837-32038 + AF 0.95 18837-33930 + AF 0.95 18837-34055 + AF 0.95 18837-34805 + AF 0.96 18837-35853 + AF 0.96 18837-36283 + AF 0.97 18837-36627 + AF 0.96 18837-37285 + AF 0.96 18837-37690 + AF 0.95 18837-41269 + AF 0.97 19221-21320 + AF 0.97 19221-21956 + AF 0.95 19221-22456 + AF 0.96 19221-23894 + AF 0.95 19221-24148 + AF 0.96 19221-24421 + AF 0.96 19221-24856 + AF 0.95 19221-24868 + AF 0.95 19221-27115 + AF 0.95 19221-31488 + AF 0.95 19221-31787 + AF 0.96 19221-35853 + AF 0.95 19221-36283 + AF 0.96 19221-36627 + AF 0.95 19221-37285 + AF 0.96 19221-37566 + AF 0.95 19221-41269 + AF 0.95 19732-20228 + AF 0.95 19950-20228 + AF 0.95 19950-21320 + AF 0.95 19950-24856 + AF 0.95 19950-25800 + AF 0.96 19950-27115 + AF 0.95 19950-34055 + AF 0.95 19950-35853 + AF 0.95 19950-36627 + AF 0.95 20228-20876 + AF 0.96 20228-21320 + AF 0.97 20228-21830 + AF 0.95 20228-22456 + AF 0.97 20228-22992 + AF 0.95 20228-23577 + AF 0.97 20228-23789 + AF 0.96 20228-23894 + AF 0.95 20228-24856 + AF 0.96 20228-25060 + AF 0.97 20228-25301 + AF 0.95 20228-25800 + AF 0.95 20228-27115 + AF 0.97 20228-31488 + AF 0.96 20228-32876 + AF 0.95 20228-34055 + AF 0.95 20228-34805 + AF 0.95 20228-35677 + AF 0.95 20228-35853 + AF 0.97 20228-36283 + AF 0.98 20228-36447 + AF 0.95 20228-36627 + AF 0.96 20228-37285 + AF 0.96 20228-37566 + AF 0.95 20228-41269 + AF 0.97 20228-42214 + AF 0.95 20643-21320 + AF 0.96 20643-23577 + AF 0.95 20643-27115 + AF 0.95 20643-35853 + AF 0.95 20643-36283 + AF 0.96 20643-36447 + AF 0.96 20643-41269 + AF 0.96 20863-20876 + AF 0.95 20863-21320 + AF 0.97 20863-25060 + AF 0.95 20863-25170 + AF 0.96 20863-25301 + AF 0.95 20863-27115 + AF 0.96 20863-34055 + AF 0.95 20863-35853 + AF 0.95 20863-36627 + AF 0.95 20863-37285 + AF 0.95 20863-42122 + AF 0.95 20876-21320 + AF 0.97 20876-21956 + AF 0.95 20876-27115 + AF 0.96 20876-31488 + AF 0.95 20876-34805 + AF 0.95 20876-36627 + AF 0.95 20876-42122 + AF 0.95 21028-31488 + AF 0.95 21076-21320 + AF 0.97 21076-25060 + AF 0.95 21076-27115 + AF 0.97 21076-35853 + AF 0.96 21076-36283 + AF 0.95 21076-36447 + AF 0.96 21076-41269 + AF 0.95 21076-42122 + AF 0.96 21320-21830 + AF 0.97 21320-21956 + AF 0.96 21320-22377 + AF 0.95 21320-22456 + AF 0.96 21320-22992 + AF 0.95 21320-23577 + AF 0.95 21320-23789 + AF 0.97 21320-23894 + AF 0.97 21320-24148 + AF 0.96 21320-24421 + AF 0.97 21320-24856 + AF 0.97 21320-24868 + AF 0.96 21320-25060 + AF 0.97 21320-25170 + AF 0.95 21320-25301 + AF 0.97 21320-25800 + AF 0.97 21320-26070 + AF 0.97 21320-27115 + AF 0.97 21320-28628 + AF 0.95 21320-29880 + AF 0.97 21320-31488 + AF 0.98 21320-32038 + AF 0.96 21320-33930 + AF 0.96 21320-34055 + AF 0.97 21320-34805 + AF 0.97 21320-35677 + AF 0.95 21320-35853 + AF 0.97 21320-36283 + AF 0.97 21320-36447 + AF 0.96 21320-36627 + AF 0.97 21320-37285 + AF 0.96 21320-37566 + AF 0.95 21320-40022 + AF 0.96 21320-41269 + AF 0.97 21320-42122 + AF 0.97 21320-42214 + AF 0.95 21830-22456 + AF 0.96 21830-24421 + AF 0.95 21830-32038 + AF 0.95 21830-34055 + AF 0.95 21830-36627 + AF 0.95 21830-37566 + AF 0.95 21830-41269 + AF 0.95 21956-22456 + AF 0.95 21956-23894 + AF 0.96 21956-25060 + AF 0.95 21956-26070 + AF 0.95 21956-27115 + AF 0.95 21956-28628 + AF 0.95 21956-29880 + AF 0.96 21956-29894 + AF 0.96 21956-31488 + AF 0.97 21956-32038 + AF 0.95 21956-34055 + AF 0.97 21956-35853 + AF 0.96 21956-36283 + AF 0.95 21956-37285 + AF 0.96 21956-42122 + AF 0.95 22377-42122 + AF 0.95 22456-24856 + AF 0.95 22456-25170 + AF 0.95 22456-27115 + AF 0.95 22456-29880 + AF 0.95 22456-31488 + AF 0.95 22456-33930 + AF 0.95 22456-34805 + AF 0.95 22456-42122 + AF 0.96 22456-42214 + AF 0.95 23577-27115 + AF 0.95 23577-33930 + AF 0.95 23577-35677 + AF 0.95 23577-35853 + AF 0.95 23577-42122 + AF 0.95 23789-23894 + AF 0.95 23789-25800 + AF 0.95 23789-27115 + AF 0.95 23789-29880 + AF 0.95 23789-31488 + AF 0.95 23789-31787 + AF 0.95 23789-35853 + AF 0.95 23789-36627 + AF 0.95 23789-37566 + AF 0.96 23789-42122 + AF 0.96 23894-27115 + AF 0.95 23894-29880 + AF 0.95 23894-31488 + AF 0.95 23894-32038 + AF 0.96 23894-33930 + AF 0.95 23894-34805 + AF 0.95 23894-36283 + AF 0.95 23894-40022 + AF 0.95 23894-42122 + AF 0.95 24148-27115 + AF 0.95 24148-32038 + AF 0.96 24148-36627 + AF 0.95 24148-42122 + AF 0.95 24421-27115 + AF 0.95 24421-35853 + AF 0.95 24421-37566 + AF 0.95 24421-41269 + AF 0.96 24856-25060 + AF 0.95 24856-32038 + AF 0.95 24856-34055 + AF 0.95 24856-34805 + AF 0.95 24856-36283 + AF 0.95 24856-41269 + AF 0.95 24868-27115 + AF 0.95 25060-27115 + AF 0.97 25060-35853 + AF 0.95 25060-36283 + AF 0.95 25060-36627 + AF 0.95 25060-37566 + AF 0.95 25060-42214 + AF 0.95 25170-27115 + AF 0.96 25170-31488 + AF 0.95 25170-34805 + AF 0.95 25170-35853 + AF 0.95 25170-36283 + AF 0.95 25170-36627 + AF 0.96 25800-27115 + AF 0.95 25800-29880 + AF 0.95 25800-32876 + AF 0.95 25800-34805 + AF 0.95 25800-35677 + AF 0.96 25800-35853 + AF 0.96 25800-37566 + AF 0.96 25800-40022 + AF 0.95 25800-42122 + AF 0.96 25800-42214 + AF 0.96 26070-27115 + AF 0.95 26070-29880 + AF 0.95 26070-31488 + AF 0.95 26070-34805 + AF 0.96 26070-35853 + AF 0.95 27115-29880 + AF 0.95 27115-31488 + AF 0.96 27115-32038 + AF 0.95 27115-33930 + AF 0.95 27115-34055 + AF 0.95 27115-34805 + AF 0.96 27115-35677 + AF 0.96 27115-35853 + AF 0.95 27115-36283 + AF 0.96 27115-36447 + AF 0.96 27115-36627 + AF 0.95 27115-37566 + AF 0.96 27115-37690 + AF 0.95 27115-40022 + AF 0.97 27115-41269 + AF 0.96 27115-42122 + AF 0.96 27115-42214 + AF 0.95 29880-33930 + AF 0.95 29880-34055 + AF 0.95 29880-41269 + AF 0.95 29880-42122 + AF 0.95 29894-41269 + AF 0.95 29894-42122 + AF 0.95 31488-33930 + AF 0.95 31488-34805 + AF 0.96 31488-35853 + AF 0.96 31488-37566 + AF 0.95 31488-42214 + AF 0.96 32038-35677 + AF 0.95 32038-36447 + AF 0.95 32038-40022 + AF 0.97 32038-41269 + AF 0.95 32038-42122 + AF 0.96 33930-34055 + AF 0.97 33930-36283 + AF 0.95 33930-41269 + AF 0.95 34055-35677 + AF 0.97 34055-42214 + AF 0.95 34055-64283 + AF 0.96 34805-35677 + AF 0.95 34805-35853 + AF 0.95 34805-36447 + AF 0.96 34805-36627 + AF 0.96 34805-40022 + AF 0.95 34805-41269 + AF 0.96 34805-42122 + AF 0.96 35677-36283 + AF 0.96 35853-40022 + AF 0.96 35853-41269 + AF 0.95 35853-42122 + AF 0.96 36283-36627 + AF 0.95 36283-37566 + AF 0.97 36283-40022 + AF 0.95 36283-41269 + AF 0.96 36283-42122 + AF 0.95 36283-42214 + AF 0.96 36627-40022 + AF 0.96 36627-41269 + AF 0.96 36627-42122 + AF 0.96 37285-42122 + AF 0.96
TABLE-US-00009 TABLE 7 Thymosin-β4 Protein AUC p-value* Thymosin-β4 0.94 0.066 *One-sided p-value versus AF volume.
TABLE-US-00010 TABLE 8 Cluster Ac-SDKP + AF Cluster AUC p-value* Ac-SDKP + AF 0.98 0.042 *One-sided p-value versus AF volume.
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