A chromatograph mass spectrometer according to an aspect of the present invention is a chromatograph mass spectrometer including: a chromatograph unit (LC unit 1) configured to separate components in a sample; and a mass spectrometer (MS unit 2) configured to execute mass spectrometry on ions having a specific mass-to-charge ratio derived from a compound for each compound temporally separated by the chromatograph unit, the chromatograph mass spectrometer further including: an analysis condition setting unit (30) configured to allow a user to input a width of a peak on a chromatogram as one of analysis parameters; a data point number storage (311) configured to store information on an appropriate number of data points corresponding to one peak; a sampling time interval calculator (312) configured to calculate a sampling time interval, which is a timing for acquiring data for creating the chromatogram, from the inputted peak width and data point number; and an analysis control unit (32) configured to control an operation of the mass spectrometer so as to acquire ion intensity data in the mass spectrometer according to the sampling time interval.

A method of ion imaging is disclosed that includes automatically sampling a plurality of different locations on a sample using a front device which is arranged and adapted to generate aerosol, smoke or vapour from the sample. Mass spectral data and/or ion mobility data corresponding to each location is obtained and the obtained mass spectral data and/or ion mobility data is used to construct, train or improved a sample classification model.

A method is disclosed comprising providing a biological sample on a swab, directing a spray of charged droplets onto a surface of the swab in order to generate a plurality of analyte ions, and analysing the analyte ions.

A mass spectrometer adopting a configuration of a multi-stage differential evacuation system appropriately performs optimization of a direct-current voltage applied to a plurality of ion optical elements for transporting ions. An auto-tuning controller acquires intensity data of ions derived from a predetermined component while changing a direct-current voltage applied to ion guides and the like, and searches for a direct-current voltage at which the intensity is maximized. When the direct-current voltage applied to a certain ion optical element is changed at the time of automatic adjustment, the direct-current voltage applied to all the ion optical elements thereafter is also changed by the same amount. Since the direct-current voltage difference between two adjacent ion optical elements always changes at only one point, the direct-current potential difference can be determined so as to optimize the ion passage efficiency.

A mass spectrometer includes an ion source configured to produce ions from a sample; a set of quadrupole rods configured to select ions based on a mass-to-charge ratio; a DC rod driver configured to produce a voltage; a DC rod driver filter configured to filter RF frequency interference; and a controller. The controller is configured to utilize the results of the constrained convex optimization to cause a DC rod drive to produce the DC filter input and provide a required voltage to the set of quadrupole rods, the constrained convex utilizing a impulse response curve of the DC rod driver filter to determine a DC filter input to achieve the required voltage on the set of quadrupole rods; select ions passing through the set of quadrupole rods based on the mass-to-charge ratio; and measure the intensity of the ions.

A mass spectrometer is disclosed comprising a system control module (1715) for controlling the operation of the mass spectrometer. The system control module (1715) comprises one or more functional modules, each functional module being operable to perform a predetermined function of the mass spectrometer. The system control module (1715) and/or one or more functional modules are operable to communicate non-time information with each other using a time code of a communications protocol.

Provided is a mass spectrometer including: a measurement condition setter (42) configured to set a plurality of measurement conditions which are different from each other in terms of the set value of at least one measurement parameter; a measurement executer (43) configured to acquire a plurality of sets of mass spectrometric data respectively corresponding to the plurality of measurement conditions; a product ion extractor (44) configured to extract product ions detected with intensities exceeding a previously determined reference value; an MRM spectrum element information creator (45) configured to determine the mass-to-charge ratios and measured intensities of the extracted product ions, the mass-to-charge ratio of the precursor ion, as well as the measurement condition, and to create a plurality of pieces of MRM spectrum element information; an MRM spectrum composer (46) configured to compose an MRM spectrum from the mass-to-charge ratios and the measured intensities of the product ions included in the plurality of pieces of MRM spectrum element information; and a library data creator (47) configured to relate the MRM spectrum to information concerning the target compound to create library data for the target compound.

A method of analysis using mass and/or ion mobility spectrometry or ion mobility spectrometry is disclosed comprising: using a first device to generate aerosol, smoke or vapour from one or more regions of a first target of biological material; and el mass and/or ion mobility analysing and/or ion mobility analysing said aerosol, smoke, or vapour, or ions derived therefrom so as to obtain first spectrometric data. The method may use an ambient ionisation method.

A mass spectrometry (MS) apparatus is provided. The MS apparatus includes a mass spectrometer, an ionization source coupled to the mass spectrometer, and a flow injection system (FIS) coupled to the ionization source. The ionization source is configured to provide an ionized gas flow of an analyte towards an entrance of the mass spectrometer. The ionization source is further configured to provide a second gas flow of a second gas. The MS apparatus is configured to measure a mass spectrometer (MS) signal of the analyte. The MS apparatus is further configured to analyze a dependency of the MS signal of the analyte versus a parameter of the second gas flow or a state of the second gas flow and to determine a condition of the apparatus based on the analyzed dependency.

An apparatus for performing ambient ionization mass and/or ion mobility spectrometry is disclosed. The apparatus comprises a substantially cylindrical, tubular, rod-shaped, coil-shaped, helical or spiral-shaped collision assembly; and a first device arranged and adapted to direct analyte, smoke, fumes, liquid, gas, surgical smoke, aerosol or vapor onto said collision assembly.