Disclosed are methods for performing capillary electrophoresis on two or more nucleic acid samples. The methods employ a forward voltage to move a first sample forward from an inlet to an interrogation region in the capillary, then a backward voltage to move the first sample backward, and then a forward voltage again to move the first sample and a second sample forward. Systems and apparatuses for performing capillary electrophoresis are also provided.

A method of mass spectrometry or ion mobility spectrometry is disclosed in which analyte ions of a desired charge state are isolated. The method comprises: separating analytes according to their electrophoretic mobility; ionising the analytes; and mass filtering the resulting analyte ions, wherein the mass to charge ratios of the ions transmitted by a mass filter are varied as a function of the electrophoretic mobility and according to a predetermined relationship such that substantially only ions having said desired charge state are transmitted by the mass filter.

A dual-mode capillary electrophoresis system (100) is disclosed, which comprises a plurality of capillaries for receiving a plurality of samples, a UV radiation source (120) for generating UV radiation along a first path (PB), a laser light source (110) for generating laser radiation along a second path (PA), and a galvanometric mirror (116) configured to receive radiation from said UV radiation source along said first path and to receive light from said laser light source along said second path, and to direct said received UV radiation and said laser light onto a common optical path, said galvanometric minor further being configured to scan said UV radiation and said laser light sequentially over said plurality of capillaries. The system can further include a detector (190) for detecting the UV radiation as well as a detector (180) for detecting fluorescent radiation via optical fibers (185) emitted by the samples in response to laser excitation.

In an electrophoresis apparatus using a capillary, electrophoresis using a single capillary sometimes requires replacement of a sieving matrix. Replacement with a different sieving matrix has conventionally required cleaning with sieving matrix cleaning liquid, which has increased costs and time required. An electrophoresis apparatus according to the present invention comprises an anodic capillary head provided at a distal end of the capillary, a sieving matrix container filled with a sieving matrix used for electrophoresis, and a filling mechanism for filling the capillary with the sieving matrix via the sieving matrix container. The filling mechanism fills the capillary, which is already filled with the sieving matrix, with a sieving matrix different from the already-filled sieving matrix without using sieving matrix cleaning liquid.

An electrophoresis method, system, and gel recover biological substances from the gel with high efficiency. The method uses an electrophoresis gel having an injection hole into which biological substances are injected and a recovery hole from which the biological substances are recovered. The electrophoresis method includes injecting the biological substances into the injection hole, and applying an electric field penetrating the injection and recovery holes. A vertical axis in a downward direction as a positive direction is set as an X-axis, an axis which is perpendicular to the X-axis is set as a Y-axis, and coordinates of a bottom of the recovery hole are set as (X.sub.C, Y.sub.C). The X coordinate X.sub.C of the bottom of the recovery hole satisfies X.sub.C>X.sub.1 when the biological substance is electrophoresed to coordinates (X.sub.1, Y.sub.C) in the recovery hole from a bottom of the injection hole in the applying the electric field.

Example embodiments provide systems and methods for identifying samples of interests by comparing aligned time-series measurements, For example, the techniques described herein may be used to, among other applications, perform data capture, processing, and analysis of high-throughput capillary electrophoresis data for protein identification. Other applications include analysis of DNA and RNA samples, and/or polysaccharides. Time-series measurements may be collected from an analysis instrument and automatically aligned based, e.g., on peaks in the data. The aligned peaks of test samples and control samples may be programmatically compared to identify samples of interest; in some embodiments, the data peaks may be permitted to float within a predefined window so as to improve the quality of the comparison and provide more meaningful results. The system may generate an output including an identifier of a sample of interest, images of spectral peaks, and/or tables of time-series measurements.

A CE based method and kit for the determination of the size and purity of an AAV genome which relies on Capillary Electrophoresis-Laser Induced Fluorescence (CE-LIF) analysis. These methods and kits are capable of detecting intact and partial genomes in a virus vectors such as adeno-associated viruses as well as remove small size impurities. In one example, the method can include creating a nucleic acid ladder using CE-LIF, releasing the genome from within an adeno-associated virus, purifying said genome and analyzing said genome using CE-LIF and comparing the results of the analysis of the genome to the nucleic acid ladder to determine a size of nucleic acids in the genome.

A method of analyzing a molecule is disclosed. A lipid bilayer is formed such that it divides a first reservoir characterized by a first reservoir osmolarity from a second reservoir characterized by a second reservoir osmolarity. An electrolyte solution is flowed to the first reservoir that tends to make a first change to a ratio of the first reservoir osmolarity to the second reservoir osmolarity. A voltage is applied across the lipid bilayer, wherein the lipid bilayer is inserted with a nanopore, and wherein a net transfer of ions between the first reservoir and the second reservoir tends to make a second change to the ratio of the first reservoir osmolarity to the second reservoir osmolarity, and wherein the first change to the ratio and the second change to the ratio tends to counter-balance each other.

The invention is an improved ultraviolet absorption-based multiplex capillary electrophoresis instrument with at least four and preferably six user-accessible vertically stacked drawers. An x-z stage moves samples from the user accessible drawers to the capillary array for analysis. A computer program allows users to add capillary electrophoresis jobs to a queue corresponding to the analysis of rows or plates of samples without stopping or interrupting runs in progress. A double-set of enclosures surrounding the light source enables collection of high-quality data. The invention also may include a capillary reservoir with separate flow channels for the capillary tips and electrode.

A biosensor system includes an array of biosensors with a plurality of electrodes situated proximate the biosensor. A controller is configured to selectively energize the plurality of electrodes to generate a DEP force to selectively position a test sample relative to the array of biosensors.