Systems and computer-implemented methods of performing image registration. One method includes receiving a first image and a second image acquired from a patient at different times and, in each of the first image and the second image, detecting an upper boundary of an imaged object in an image coordinate system and detecting a lower boundary of the imaged object in the image coordinate system. The method further includes, based on the upper boundary and the lower boundary of each of the first image and the second image, cropping and padding at least one of the first image and the second image to create an aligned first image and an aligned second image and executing a registration model on the aligned first image and the aligned second image to compute a deformation field between the aligned first image and the aligned second image.

A method includes applying both a first dedicated functional-anatomical registration scheme to a first volume of interest to deform the first volume of interest and a second dedicated functional-anatomical registration scheme to a second volume of interest to deform the second volume of interest, wherein the first volume of interest at least partially encompasses the second volume of interest. The method includes identifying or segmenting relevant organs or anatomical structures related to a first group and a second group in the first volume of interest and the second volume of interest, respectively; generating a spatially smooth-transition weight mask that gives higher weight to image data corresponding to the identified or segmented relevant organs or anatomical structures related to the first group and the second group; and generating a final cohesive registered image volume from the first image volume and the second image volume utilizing the spatially smooth-transition weight mask.

The present disclosure provides systems and methods for predicting a disease state of a subject using ultrasound imaging and ancillary information to the ultrasound imaging. At least two quantitative measurements of a subject, including at least one measurement taken using ultrasound imaging, as part of quantified information can be identified. One of the quantitative measurements can be compared to a first predetermined standard, included as part of ancillary information to the quantified information, in order to identify a first initial value. Further, another of the quantitative measurements can be compared to a second predetermined standard, included as part of the ancillary information, in order to identify a second initial value. Subsequently, the quantitative information can be correlated with the ancillary information using the first initial value and the second initial value to determine a final value that is predictive of a disease state of the subject.

Systems and methods are provided for segmenting tissue within a computed tomography (CT) scan of a region of interest into one of a plurality of tissue classes. A plurality of atlases are registered to the CT scan to produce a plurality of registered atlases. A context model representing respective likelihoods that each voxel of the CT scan is a member of each of the plurality of tissue classes is determined from the CT scan and a set of associated training data. A proper subset of the plurality of registered at lases is selected according to the context model and the registered atlases. The selected proper subset of registered atlases are fused to produce a combined segmentation.

Embodiments provide a deep learning framework to accurately segment liver and spleen using a convolutional neural network with both short and long residual connections to extract their radiomic and deep features from multiparametric MRI. Embodiments will provide an “ensemble” deep learning model to quantify biopsy derived liver fibrosis stage and percentage using the integration of multiparametric MRI radiomic and deep features, MRE data, as well as routinely available clinical data. Embodiments will provide a deep learning model to quantify MRE-derived liver stiffness using multiparametric MRI, radiomic and deep features and routinely-available clinical data.

Some embodiments are directed to a segmentation of medical images. For example, a medical image may be registering to multiple atlas images after which a segmentation function may be applied. Multiple segmentation may be fused into a final overall segmentation. The atlas images may be selected on the basis of high segmentation quality or low registration quality.

The present disclosure describes a computer-implemented method for processing clinical three-dimensional image. The method includes training a fully supervised segmentation model using a labelled image dataset containing images for a disease at a predefined set of contrast phases or modalities, allow the segmentation model to segment images at the predefined set of contrast phases or modalities; finetuning the fully supervised segmentation model through co-heterogenous training and adversarial domain adaptation (ADA) using an unlabelled image dataset containing clinical multi-phase or multi-modality image data, to allow the segmentation model to segment images at contrast phases or modalities other than the predefined set of contrast phases or modalities; and further finetuning the fully supervised segmentation model using domain-specific pseudo labelling to identify pathological regions missed by the segmentation model.

An image alignment apparatus includes at least one processor, and the processor derives, for each of first and second three-dimensional images each including a plurality of tomographic images and a common structure, first and second three-dimensional coordinate information that define an end part of the structure in a direction intersecting the tomographic image. The processor aligns the first three-dimensional image and the second three-dimensional image by using the first and second three-dimensional coordinate information to align the common structure included in each of the first three-dimensional image and the second three-dimensional image at least in the direction intersecting the tomographic image.

Within the field of elastography, a new approach analyzes the limiting case of shear waves established as a reverberant field. In this framework, it is assumed that a distribution of shear waves exists, oriented across all directions in 3D (e.g. 2D space+time). The simultaneous multi-frequency application of reverberant shear wave fields can be accomplished by applying an array of external sources that can be excited by multiple frequencies within a bandwidth, for example 50, 100, 150, . . . 500 Hz, all contributing to the shear wave field produced in the liver or other target organ. This enables the analysis of the dispersion of shear wave speed as it increases with frequency, indicating the viscoelastic and lossy nature of the tissue under study. Furthermore, dispersion images can be created and displayed alongside the shear wave speed images. Studies on breast and liver tissues using the multi-frequency reverberant shear wave technique, employing frequencies up to 700 Hz in breast tissue, and robust reverberant patterns of shear waves across the entire liver and kidney in obese patients are reported. Dispersion images are shown to have contrast between tissue types and with quantitative values that align with previous studies.

Using a computer-implemented intermediary by which contouring performed by two participants, such as two physicians, can be compared. First, contouring performed by each participant can be compared to contouring performed by the intermediary. Then, by way of the common intermediary and a transitive analysis, contouring performed by each participant can be compared.