D-beta-HYDROXYBUTYRATE DEHYDROGENASES (BHBDhs) AND THEIR USE FOR KETONE MONITORING
20230383265 · 2023-11-30
Inventors
Cpc classification
International classification
Abstract
Engineered D-β-hydroxybutyrate dehydrogenases (BHBDhs) are disclosed. In some embodiments, the BHBDhs are derived from enzymes which are putative homologues of A. faecalis-derived BHBDh, including from thermophilic bacteria and radiation-resistance bacteria. These BHBDhs may also comprise additional mutations to increase their catalytic activity. Further, BHBDhs modified to include an NAD-binding loop, so as to tightly bind an NAD.sup.+ co-factor, are also disclosed.
Claims
1. An engineered β-hydroxybutyrate dehydrogenase (BHBDh) with increased thermal stability as compared to the wild-type.
2. The engineered BHBDh of claim 1, comprising a sequence having at least 90% sequence identity to any one of SEQ ID NOs: 1-7 or 12-20, provided at least one of the amino acids at a position in said sequence corresponding to positions 165-188 is different from the amino acid occupying the corresponding position according to SEQ ID NO: 3.
3. The engineered BHBDh of claim 2, comprising a modification at one or more amino acid positions selected from: (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, and (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3.
4. The engineered BHBDh of claim 3, comprising a modification at one or more amino acid positions selected from: (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Cys; (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Gly; and (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Trp.
5. (canceled)
6. The engineered BHBDh of any of the preceding claims, comprising a sequence having at least 90% sequence identity to any one of SEQ ID NOs: 3-5.
7-8. (canceled)
9. An engineered β-hydroxybutyrate dehydrogenase (BHBDh) having a NAD-binding sequence inserted therein.
10. The engineered BHBDh of claim 9, wherein the BHBDh has a sequence having at least 90% sequence identity to any one of SEQ ID NOs: 1-7 or 12-20.
11. (canceled)
12. The engineered BHBDh of claim 10, wherein at least one of the amino acids at a position in said sequence corresponding to positions 4-24, and at least one of the amino acids at a position in said sequence corresponding to positions 61-81, are different from the amino acids occupying the corresponding positions according to SEQ ID NO: 1.
13. The engineered BHBDh of claim 12, comprising a modification at one or more amino acid positions selected from: (a) a position corresponding to position 14 of the amino acid sequence set forth in SEQ ID NO: 1; and (b) a position corresponding to position 71 of the amino acid sequence set forth in SEQ ID NO: 1.
14. The engineered BHBDh of claim 13, comprising a modification at one or more amino acid positions selected from: (a) a position corresponding to position 14 of the amino acid sequence set forth in SEQ ID NO: 1, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Arg; and (b) a position corresponding to position 71 of the amino acid sequence set forth in SEQ ID NO: 1, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Arg.
15. The engineered BHBDh of claim 10, wherein at least one of the amino acids at a position in said sequence corresponding to positions 165-188 is different from the amino acid occupying the corresponding position according to SEQ ID NO: 3.
16. The engineered BHBDh of claim 15, comprising a modification at one or more amino acid positions selected from: (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, and (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3.
17. The engineered BHBDh of claim 16, comprising a modification at one or more amino acid positions selected from: (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Cys; (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Gly; and (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Trp.
18-31. (canceled)
32. The engineered BHBDh of claim 9, having a nicotinamide adenine dinucleotide (NAD) bound thereto.
33. An expression vector comprising a nucleic acid sequence encoding the engineered BHBDh of claim 1.
34. A method of producing the engineered BHBDh of claim 1, the method comprising the steps of i) culturing a host cell transfected with a vector comprising a nucleic acid sequence encoding the engineered BHBDh under conditions suitable for expression of the polypeptide from the host cell, and ii) recovering the engineered BHBDh.
35. A method of assaying β-hydroxybutyrate (BHB) in a sample, the method comprising the steps of: contacting the sample with the engineered BHBDh of claim 1; and measuring an amount of the BHB oxidized by the engineered BHBDh.
36. The method of claim 35, wherein the measurement is a continuous measurement.
37. A device for assaying BHB in a sample, the device comprising: the engineered BHBDh of claim 1; and an electron mediator.
38. (canceled)
39. An enzyme electrode comprising the engineered BHBDh of claim 1 immobilized on an electrode.
40. An enzyme sensor for assaying BHB comprising the enzyme electrode of claim 39 as a working electrode.
Description
BRIEF DESCRIPTION OF THE SEVERAL VIEWS OF THE DRAWING(S)
[0021] Having thus described the invention in general terms, reference will now be made to the accompanying drawings, which are not necessarily drawn to scale.
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DETAILED DESCRIPTION
[0052] The presently disclosed subject matter will now be described more fully hereinafter. However, many modifications and other embodiments of the presently disclosed subject matter set forth herein will come to mind to one skilled in the art to which the presently disclosed subject matter pertains having the benefit of the teachings presented in the foregoing descriptions. Therefore, it is to be understood that the presently disclosed subject matter is not to be limited to the specific embodiments disclosed and that modifications and other embodiments are intended to be included within the scope of the appended claims. In other words, the subject matter described herein covers all alternatives, modifications, and equivalents. In the event that one or more of the incorporated literature, patents, and similar materials differs from or contradicts this application, including but not limited to defined terms, term usage, described techniques, or the like, this application controls. Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in this field. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety.
[0053] The term “subject” refers to a mammal (e.g., a human) in need of detection or quantification of an analyte, or target substance. The subject may include dogs, cats, pigs, cows, sheep, goats, horses, rats, mice, non-human mammals, and humans. The term “subject” does not necessarily exclude an individual that is healthy in all respects and does not have or show signs of elevated or lowered target substance. In embodiments, the sample is a biological sample.
[0054] Compositions or methods “comprising” or “including” one or more recited elements may include other elements not specifically recited. For example, a composition that “comprises” or “includes” a protein may contain the protein alone or in combination with other ingredients.
[0055] Designation of a range of values includes all integers, tenths, and hundredths within or defining the range, and all subranges defined by integers within the range.
[0056] The term “in vivo” refers to natural environments (e.g., a cell or organism or body) and to processes or reactions that occur within a natural environment.
[0057] “Sequence identity” or “identity” in the context of two polynucleotides or polypeptide sequences refers to the residues in the two sequences that are the same when aligned for maximum correspondence over a specified comparison window. When percentage of sequence identity is used in reference to proteins it is recognized that residue positions which are not identical often differ by conservative amino acid substitutions, where amino acid residues are substituted for other amino acid residues with similar chemical properties (e.g., charge or hydrophobicity) and therefore do not change the functional properties of the molecule. When sequences differ in conservative substitutions, the percent sequence identity may be adjusted upwards to correct for the conservative nature of the substitution. Sequences that differ by such conservative substitutions are said to have “sequence similarity” or “similarity.” Means for making this adjustment are well known to those of skill in the art. Typically, this involves scoring a conservative substitution as a partial rather than a full mismatch, thereby increasing the percentage sequence identity. Thus, for example, where an identical amino acid is given a score of 1 and a non-conservative substitution is given a score of zero, a conservative substitution is given a score between zero and 1. The scoring of conservative substitutions is calculated, e.g., as implemented in the program PC/GENE (Intelligenetics, Mountain View, California).
[0058] “Percentage of sequence identity” refers to the value determined by comparing two optimally aligned sequences (greatest number of perfectly matched residues) over a comparison window, wherein the portion of the polynucleotide sequence in the comparison window may comprise additions or deletions (i.e., gaps) as compared to the reference sequence (which does not comprise additions or deletions) for optimal alignment of the two sequences. The percentage is calculated by determining the number of positions at which the identical nucleic acid base or amino acid residue occurs in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the window of comparison, and multiplying the result by 100 to yield the percentage of sequence identity. Unless otherwise specified (e.g., the shorter sequence includes a linked heterologous sequence), the comparison window is the full length of the shorter of the two sequences being compared.
[0059] A “promoter” is a regulatory region of DNA usually comprising a TATA box capable of directing RNA polymerase II to initiate RNA synthesis at the appropriate transcription initiation site for a particular polynucleotide sequence. A promoter may additionally comprise other regions which influence the transcription initiation rate. The promoter sequences disclosed herein modulate transcription of an operably linked polynucleotide. Examples of promoters can be found, for example, in WO 2013/176772, herein incorporated by reference in its entirety for all purposes.
[0060] “Operable linkage” or being “operably linked” includes juxtaposition of two or more components (e.g., a regulatory sequence, such as a promoter, and another sequence element) such that both components function normally and allow the possibility that at least one of the components can mediate a function that is exerted upon at least one of the other components. For example, a promoter can be operably linked to a coding sequence if the promoter controls the level of transcription of the coding sequence in response to the presence or absence of one or more transcriptional regulatory factors. Operable linkage can include such sequences being contiguous with each other or acting in trans (e.g., a regulatory sequence can act at a distance to control transcription of the coding sequence).
[0061] Unless otherwise stated, sequence identity/similarity values refer to the value obtained using GAP Version 10 using the following parameters: % identity and % similarity for a nucleotide sequence using GAP Weight of 50 and Length Weight of 3, and the nwsgapdna.cmp scoring matrix; % identity and % similarity for an amino acid sequence using GAP Weight of 8 and Length Weight of 2, and the BLOSUM62 scoring matrix; or any equivalent program thereof “Equivalent program” includes any sequence comparison program that, for any two sequences in question, generates an alignment having identical nucleotide or amino acid residue matches and an identical percent sequence identity when compared to the corresponding alignment generated by GAP Version 10.
[0062] Unless otherwise apparent from the context, the term “about” encompasses values within a standard margin of error of measurement (e.g., SEM) of a stated value or variations ±0.5%, 1%, 5%, or 10% from a specified value.
[0063] The singular forms of the articles “a,” “an,” and “the” include plural references unless the context clearly dictates otherwise.
[0064] Statistically significant means p≤0.05.
[0065] An embodiment is an engineered β-hydroxybutyrate dehydrogenase (BHBDh) with increased thermal stability as compared to the wild-type.
[0066] In a further embodiment, the engineered BHBDh comprises a sequence having at least 90% sequence identity to any one of SEQ ID NOs: 1-7 or 12-20, provided at least one of the amino acids at a position in said sequence corresponding to positions 165-188 is different from the amino acid occupying the corresponding position according to SEQ ID NO: 3. In a further embodiment, the engineered BHBDh comprises a sequence having at least 90% sequence identity to any one of SEQ ID NOs: 1-7, provided at least one of the amino acids at a position in said sequence corresponding to positions 165-188 is different from the amino acid occupying the corresponding position according to SEQ ID NO: 3. In an embodiment, the engineered BHBDh comprises a sequence having at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 99.5% sequence identity to any one of SEQ ID NOs: 1-7 or 12-20. In an embodiment, the engineered BHBDh comprises a sequence having at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 99.5% sequence identity to any one of SEQ ID NOs: 1-7.
[0067] In a further embodiment, the engineered BHBDh comprises a modification at one or more amino acid positions selected from: [0068] (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, [0069] (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, and [0070] (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3.
[0071] In a further embodiment, the engineered BHBDh comprises a modification at one or more amino acid positions selected from: [0072] (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Cys; [0073] (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Gly; and [0074] (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Trp.
[0075] In a further embodiment, the engineered BHBDh comprises a modification at: [0076] (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Cys; [0077] (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Gly; and [0078] (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Trp.
[0079] In a further embodiment, the engineered BHBDh comprises a sequence having at least 90% sequence identity to any one of SEQ ID NOs: 3-5. In an embodiment, the engineered BHBDh comprises a sequence having at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 99.5% sequence identity to any one of SEQ ID NOs: 3-5.
[0080] In a further embodiment, the engineered BHBDh comprises a modification at one or more amino acid positions selected from: [0081] (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the amino acid residue Ala with an amino acid residue Cys; [0082] (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the amino acid residue Ala with an amino acid residue Gly; and [0083] (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the amino acid residue Tyr with an amino acid residue Trp.
[0084] In a further embodiment, the engineered BHBDh comprises a modification at: [0085] (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the amino acid residue Ala with an amino acid residue Cys; [0086] (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the amino acid residue Ala with an amino acid residue Gly; and [0087] (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the amino acid residue Tyr with an amino acid residue Trp.
[0088] An embodiment is an engineered β-hydroxybutyrate dehydrogenase (BHBDh) having a NAD-binding sequence inserted therein. This engineered BHBDh will be of the general structure (A)-(N)-(A′), wherein [0089] A is an N-terminal portion of a BHBDh and A′ is a C-terminal portion of a BHBDh, wherein A and A′, together, form a complete BHBDh; and [0090] N is an inserted sequence capable of binding NAD.
[0091] When the sequence identity of a BHBDh is referenced, this is referring to sequence identity of A and A′, together. When the sequence identity of an engineered BHBDh is referenced, this is referring to the sequence identity of the (A)-(N)-(A′) construct.
[0092] In a further embodiment, the BHBDh has a sequence having at least 90% sequence identity to any one of SEQ ID NOs: 1-7 or 12-20. In an embodiment, the BHBDh has a sequence having at least 90% sequence identity to any one of SEQ ID NOs: 1-7. In an embodiment, the BHBDh comprises a sequence having at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 99% sequence identity to any one of SEQ ID NOs: 1-7 or 12-20. In an embodiment, the BHBDh comprises a sequence having at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 99% sequence identity to any one of SEQ ID NOs: 1-7.
[0093] In a further embodiment, the BHBDh has a sequence having at least 90% sequence identity to SEQ ID NO: 1. In an embodiment, the BHBDh comprises a sequence having at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 99% sequence identity to SEQ ID NO: 1.
[0094] In a further embodiment, at least one of the amino acids at a position in said sequence corresponding to positions 4-24, and at least one of the amino acids at a position in said sequence corresponding to positions 61-81, is different from the amino acid occupying the corresponding position according to SEQ ID NO: 1.
[0095] In a further embodiment, the BHBDh comprises a modification at one or more amino acid positions selected from: [0096] (a) a position corresponding to position 14 of the amino acid sequence set forth in SEQ ID NO: 1; and [0097] (b) a position corresponding to position 71 of the amino acid sequence set forth in SEQ ID NO: 1.
[0098] In a further embodiment, the chimeric BHBDh comprises a modification at one or more amino acid positions selected from: [0099] (a) a position corresponding to position 14 of the amino acid sequence set forth in SEQ ID NO: 1, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Arg; and [0100] (b) a position corresponding to position 71 of the amino acid sequence set forth in SEQ ID NO: 1, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Arg.
[0101] In a further embodiment, at least one of the amino acids at a position in said sequence corresponding to positions 165-188 is different from the amino acid occupying the corresponding position according to SEQ ID NO: 3.
[0102] In a further embodiment, the BHBDh comprises a modification at one or more amino acid positions selected from: [0103] (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, [0104] (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, and [0105] (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3.
[0106] In a further embodiment, the BHBDh comprises a modification at one or more amino acid positions selected from: [0107] (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Cys; [0108] (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Gly; and [0109] (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Trp.
[0110] In a further embodiment, the BHBDh comprises a modification at: [0111] (a) a position corresponding to position 175 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Cys; [0112] (b) a position corresponding to position 177 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Gly; and [0113] (c) a position corresponding to position 178 of the amino acid sequence set forth in SEQ ID NO: 3, wherein the modification includes a substitution of the wild-type amino acid residue with an amino acid residue Trp.
[0114] In a further embodiment, the NAD-binding sequence has a length of from 8-50 amino acids, or from 10-40 amino acids, or from 10-30 amino acids, or from 10-20 amino acids.
[0115] In a further embodiment, the NAD-binding sequence is derived from a nicotinoprotein dehydrogenase.
[0116] In a further embodiment, the nicotinoprotein dehydrogenase is carveol dehydrogenase.
[0117] In a further embodiment, the carveol dehydrogenase is Mycobacterium tuberculosis carveol dehydrogenase.
[0118] In a further embodiment, the NAD-binding sequence has at least 90% sequence identity to SEQ ID NO: 10. In an embodiment, the NAD-binding sequence has at least 95% sequence identity to SEQ ID NO: 10. In an embodiment, the NAD-binding sequence is SEQ ID NO: 10.
[0119] In a further embodiment, the NAD-binding sequence is inserted after an amino acid at a position corresponding to any one of positions 15-250, or 20-200, or 25-150, or 30-100, or 35-50, or 100-240, or 150-230, or 200-220, according to SEQ ID NO: 1. In an embodiment, the NAD-binding sequence is inserted after an amino acid at a position corresponding to position 35 according to SEQ ID NO: 1.
[0120] In a further embodiment, the engineered BHBDh comprises a purification tag. In an embodiment, the purification tag is a His-tag. In an embodiment, the His-tag is a His (6×)-tag. In an embodiment, the His (6×)-tag is SEQ ID NO: 11.
[0121] In an embodiment, the purification tag is at the C-terminal end of the engineered BHBDh.
[0122] In an embodiment, the engineered BHBDh has a nicotinamide adenine dinucleotide (NAD) bound thereto.
[0123] An embodiment is an expression vector comprising a nucleic acid sequence encoding any engineered BHBDh described herein.
[0124] An embodiment is a method of producing any engineered BHBDh described herein, the method comprising the steps of [0125] i) culturing a host cell transfected with a vector comprising a nucleic acid sequence encoding the engineered BHBDh under conditions suitable for expression of the polypeptide from the host cell, and [0126] ii) recovering the engineered BHBDh. In an embodiment, the vector comprises the nucleic acid sequence operably linked to a promoter.
[0127] An embodiment is a method of assaying β-hydroxybutyrate (BHB) in a sample, the method comprising the steps of [0128] contacting the sample with any engineered BHBDh described herein; and [0129] measuring an amount of the BHB oxidized by the engineered BHBDh.
[0130] In an embodiment, the measurement is a continuous measurement.
[0131] An embodiment is a device for assaying BHB in a sample, the device comprising: any engineered BHBDh described herein; and an electron mediator.
[0132] An embodiment is a kit for assaying BHB in a sample, the kit comprising: any engineered BHBDh described herein; and an electron mediator.
[0133] An embodiment is an enzyme electrode comprising any engineered BHBDh described herein immobilized on an electrode.
[0134] An embodiment is an enzyme sensor for assaying BHB comprising the enzyme electrode as a working electrode.
DISCUSSION AND EXAMPLES
[0135] At the moment, (R)-3-hydroxybutyrate dehydrogenase (D-β-hydroxybutyrate) (BHBDh, E.C. 1.1.1.30) is the only enzyme discovered in nature which catalyzes the oxidation of BHB. BHBDh is a NAD+ dependent oxidoreductase, which catalyzes the reversible reaction between BHB and acetoacetate coupled to NAD+/NADH conversion (
[0136] BHB sensing, using BHBDhs, is based on the quantification of NADH production by the reaction of BHBDh. Thus, NAD-dependent enzyme-based sensor platforms can be applied for BHB sensing. All commercially available hand-held BHB sensors, as well as the state-of-the-art research utilize BHBDhs with hardware and test strip designs that are similar to blood glucose monitors.
[0137] Technological limitation to realize in situ, real-time continuous ketone monitoring
[0138] In situ, real-time, continuous measurement of nutrients and metabolites, where the continuous measurement system is inserted/placed directly into the environment where the target analytes exist, e.g., in vivo monitoring or in situ fermentation monitoring systems, is ideal because it allows for more effective feedback control because of low or no time-lag, and eliminates concerns regarding contamination in sampling operations [Vojinovic (2006)]. Although the development of in situ, continuous, and real-time monitoring is expected, most of the currently available sensors are biophysical sensors, except the ones for glucose monitoring. Continuous glucose monitoring (CGM) systems are achieved with the combination of excellent biological or abiological molecular recognition elements and electrochemical or optical measurement principles [Lee (2021)].
[0139] BHBDhs have been commonly used for various detection systems, including spectroscopic analyses for central laboratory testing and handheld meter equipped with the electrochemical enzyme sensor strips. Recently, continuous BHB monitoring, or continuous ketone monitoring (CKM), is focused as the challenging area for the precise monitoring and care of diabetic patients, especially for those suffering from ketoacidosis. Biosensors for BHB have been reported from varieties of companies, and also reported in various academic researches. However, most of the sensors are for single use disposable electrochemical sensors, not continuous monitoring of BHB.
[0140] There are two major technological hurdles in the way of realizing CKM systems based on enzymatic analysis. Both are based on the limitation in the availabilities in the enzymes which can be used for the sensors.
[0141] The first limitation is that the stability of the enzyme is not enough to be applied for continuous monitoring systems. There have been limited number of resources for BHBDhs, and those derived from Alcaligenes faecalis or Pseudomonas species, a mesophilic bacteria derived BHBDh have been used. These enzymes are stable in powder (dried) form for several weeks at 20° C. (
[0142] The second limitation is the type of co-factor of BHBDh. Unlike the currently utilized enzyme for continuous glucose monitoring, glucose oxidase, which harbors its redox cofactor (flavin adenine dinucleotide; FAD) tightly bound in its enzyme molecule, BHBDh requires NAD.sup.+ for the oxidation of BH. NAD.sup.+ does not bind to the enzyme, and must be added in the reaction solution.
[0143] There have been only two reports about the construction of continuous ketone monitoring systems using BHBDh [Teymourian (2020); Alva (2021)]. One group reported a microneedle-based continuous ketone monitoring system [Teymourian (2020)]. They developed a functional multilayer reagent-coated microneedle biosensor, employing an ionic liquid (IL) based carbon paste transducer electrode incorporated with the phenanthroline-dione mediator, followed by a mixed BHBDh/NAD.sup.+ layer, glutaraldehyde cross-linking, and further coating with chitosan and polyvinyl chloride as outer polymer layers. The employment of IL, an imidazolium-based cation and trifluoromethyl sulfonylimide anionic groups, plays significant role in the stabilizing and confining NAD.sup.+ through hydrogen bonding along with coulombic interactions and imparting fouling-resistant and highly sensitive anodic detection of NADH. Another group [Alva (2021)] reported a single clinical site in vivo study with the continuous ketone sensor. According to their research article, they constructed ketone sensor with BHBDh, similar with their glucose sensor. There is no indication of how NAD is retained in the electrode. This reference teaches that a proprietary redox mediation chemistry containing osmium complex was deposited on the sensing layer to allow for selective oxidation of BHB and transport of electrons from the enzyme to the electrode using the wired enzyme technology. This sensor was reportedly stable for 14 days of continuous ketone monitoring in ISF with the healthy subjects. The in vitro study revealed that the sensor response covers a BHB range up to 8 mM, similar to their commercial product disposable ketone sensor.
[0144] Solving the above two technological limitations is necessary to realize continuous monitoring of BHB so as to be able to develop CKM systems.
[0145] In summary, the current biggest challenge is the limited availability of molecular recognition molecules for BHB monitoring; only NAD-dependent dehydrogenases which require soluble NAD.sup.+ in the reaction are now available, and are not suitable for CKM. To achieve CKM with extended lifetime and accuracy, new molecular recognition molecules for BHB, that can operate free of soluble cofactors, are necessary.
[0146] To overcome the above mentioned two technological limitations to realize in situ, real-time continuous ketone monitoring, novel BHBDhs have been developed: 1) thermostable BHBDhs, and 2) BHBDhs harboring tightly bound NAD in their molecule, the nicotinoprotein BHBDHs.
[0147] Thermostable BHBDhs; Based on the structural information of currently commercially available BHBDh, A. faecalis derived BHBDh, putative enzymes which are homologues of A. faecalis derived BHBDh were found, derived from various bacteria, including thermophilic bacteria and radiation-resistant bacteria, although none of them have been purified, cloned, recombinantly produced, or characterized before. The putative BHBDhs derived from Thermus thermophilus, Geobacillus stearothermophilus and Deinococcus radiotolerans were prepared, and it was found that they all possess BHBDh activity. Moreover, they are highly stable. As discussed in more detail below, whereas A. faecalis derived BHBDh starts becoming inactivated at temperatures higher than 40° C. and is totally inactivated by 20 min incubation at 55° C., BHBDhs derived from T. thermophilus, G. stearothermophilus and D. radiotolerans, were not inactivated at 40° C., and remained 100% (T. thermophilus and G. stearothermophilus) or more than 50% (D. radiotolerans) of initial activities even after incubation for 20 min at 55° C. Moreover, it was found that after incubation at 55-65° C. (T. thermophilus and G. stearothermophilus) or at 35-45° C. (D. radiotolerans), the enzyme activities increased 1.5-4 times, before the incubation. Moreover, introduction of mutations at Ala175Cys/Ala177Gly/Tyr178Trp of BHBDh derived from T. thermophilus resulted in a 3-fold increase in its catalytic activity. These results showed that novel and stable BHBDhs suitable for point of care ketone sensing and CKM systems had been developed.
[0148] Nicotinoprotein BHBDHs
[0149] A number of alcohol/aldehyde oxidoreductases have been discovered which have bound NAD(P) as a cofactor. These enzymes have been named as “Nicotino-enzymes” or “Nicotinoproteins”. They contain an intrinsic, tightly bound NAD(P)(H) that does not dissociate to exchange with the pool of free NAD(P)(H) in solution, however there are no report about nicotinoprotein BHBDHs. Engineered BHBDhs which harbor NAD in molecules were constructed by inserting a loop region derived from one of the nicotinoproteins, carveol dehydrogenase, and by introducing mutations into A. faecalis derived BHBDh, BHBDhs harboring NAD in their molecules were constructed. Such a NAD-bound engineered BHBDh is ideal for CKM systems.
[0150] The disclosed subject matter is further described in the following non-limiting Examples. It should be understood that these Examples, while indicating preferred embodiments of the invention, are given by way of illustration only.
Example 1—Preparation of BHBDhs
[0151] The putative amino acid sequences of BHBDhs derived from certain organisms are shown in
TABLE-US-00001 AfBHBDh (or AfHBDh): Alcaligenes faecalis (WP_042488285.1) (SEQ ID NO: 1) MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERST LESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPV DKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAK HGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAAREL LAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR TaHBHDh (or TaHBDh): Thermus aquaticus (WP_003045371.1) (SEQ ID NO: 2) MGMLSGKTVLVTGAGSGIGLAMARAFAREGARVLVHDVRDARWLAE ELGGVFLQADLADPQAVEALGKEAAALGVDILVNNAGFQHIDPVEAFPLETWQA MVQVMLTAPFQLIRALIPGMKAKGWGRIINVASVHGLVASPYKSAYISAKHGLVG LTKTVALEAGPYGVTVNAIAPAYVRTPLVEGQIQDQARTLGISPEEVVEKVFLAQ AAIRRLIEPEEVAELALFLASEKASAITGAVLPIDLGWTAR TtBHBDh (or TtHBDh): Thermus thermophiles (WP_014510095.1) (SEQ ID NO: 3) MGAFSGRTVLVTGAGSGIGLAIARAFAREGARVLVHDVRDASRLAEEL GGVYLQADLADPKEVEALGKEAAAMGVDVLVNNAGFQHIAPVEEFPLEVWQRM LQVMLTAPFQLTQALLPGMKRRGWGRILNIASIHGLVASPYKSAYISAKHGLLGL TKTVALEAGPHGVTVNAIAPAYVRTPLVEGQIQDQAKTLGIPPEEVAEKVFLAQA AIKRLIAPEEVAELALFLASEKASAITGAVFPIDLGWTAR DrBHBDh (or DrHBDh): Deinococcus radiotolerans (GGK93151.1) (SEQ ID NO: 4) MTVRAYTPRMTLDTQKHGMEGRAALVTGGTSGIGLAIAQRLAQDGLR VAVLDLDRPQAREVARANDLIFVGADLSRRADCRRAVDETVAALGGLDVLVNN AGFQHIDPVVDFPEDTWDAMLHVMLTAPFLLSKYAWPHLTRSGQGRIVNVASIH GHVASPFKSAYISAKHGLIGLTRTAALEAGEQGLTVNAICPGYVRTPLVEGQIADQ ARTRGLTEQEVEQKVMLEPAAIKRLLNPEDIAALASYVVSPAAWGMTGAVLDLD LGWTAR GsBHBDh (or GsHBDh): Geobacillus stearothermophilus (KZE97055.1) (SEQ ID NO: 5) MMAHRTALVTGAARGIGYEVAKTLATNGVNVVLADLKQEEVEQAAE SLRQLGCEAVGVKCDVTAEEEVKQTIHEAVKRWERLDIVVNNAGLQYVANIEDF PTEKFEQLIRVMLVGPFLAIKHAFPVMKQQRYGRIINMASINGLVGFAGKAAYNS AKHGVIGLTKVAALEGAPYGITVNALCPGYVDTELVRGQLADLAATRNVPLEKV LEEVIYPLVPQRRLLSVEEVAHYVLFLAGEQAKGVTGQAVVIDGGYTAQ BccBHBDh (or BccHBDh): Burkholderia cenocepacia (WP027810191.1) (SEQ ID NO: 6) MAADLSGKTAVVTGAASGIGKEIALELAKAGATVAIADLNQDGANAV ADEINKAGGKAIGVAMDVTNEDAVNSGIDKVAEAFGSVDILVSNAGIQIVNPIENY SFSDWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSA YVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEE EVIKKVMLGNTVDGVFTTVQDVAQTVLFLSAFPGAALTGQSVVVSHGWFMQ BcBHBDh (or BcHBDh): Burkholderia cepacian (WP_034207826.1) (SEQ ID NO: 7) MAADLSGKTAVVTGAASGIGKEIALELAKAGAAVAIADLNQDGANAV AELNEQAGGKAIGVAMDVTSEEAVNTGIDKVAEAFGSIDILVSNAGIQIVNPIENY SFSDWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSA YVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEE EVIKKVMLGNTVDGVFTTVQDVAQTVLFLSAFPSAALTGQSVVVSHGWFMQ
[0152]
TABLE-US-00002 Achromobacter (WP_049071820.1) (SEQ ID NO: 12) MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAG LAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTA LIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGL VASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK QISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAA QITGTTVSVDGGWTAR Cereibacter spaeroides KD131 (ACM00960.1) (SEQ ID NO: 13) MHMTGGRIMDLNGKRAIVTGSNSGIGLGCAEELARAGAEVVINSFTDR DEDHALAEKIGREHGVSCRYIAADMSDGEACRALIETAGGCDILVNNAG IQHVSSIEEFPVEKWNAILAINLSSAFHTTAAALPGMRAKGWGRIVNIA SAHGLTASPYKSAYVAAKHGVVGFTKVTALETAGKGITCNAICPGYVLT PLVEAQIPDQMKAHDMDRETVIREVMLDRQPSRQFATTGQIGGTVVFLC SGAADQITGTTISVDGGWTAL Paucimonas lemoignei (WP_132256256.1) (SEQ ID NO: 14) MQGKTLQGKTALVTGSTSGIGLGIARSLAEAGANIVENGFGDQKEIEAL QQSVAKEFGVQTAYHNADMSKASEIEALMKFAAEKFGMVDVLVNNAGIQ HVANVEDFPVEKWDAIIAINLTSAFHTTRLALPAMKAKNWGRIINIASV HGLVGSAQKSAYVAAKHGIVGLTKVSALENAQTGVTVNAICPGWVLTPL VQKQVDARAAANNQTNDEAKRQLLLEKQPSGEFVTPEQLGSLAVYLCSD AASQMRGMSLNVDGGWVAQ Burkholderiaceae (WP_062171810.1) (SEQ ID NO: 15) MTSSAATPLAGKTALVTGSTSGIGLGIANALAQAGANIVLNGFGDATVI QNAKSQIEQHGVKAVHHGADMSKATEIEAMIAFAIEQFGAVDVLVNNAG IQHVATIDTFPVEKWDAIIAINLTSAFHTMRVALPKMRDNGWGRVINIA SAHGLVGSVGKSAYVAAKHGIVGLTKVAALENARTGVTVNAICPGFVLT PLVQKQIDDIAAKENISPDAARSKLLGEKQPSEQFVTPEQIGKLAVFLC SEAADEMRGSALQIDGGWTSQ Citrobacter (WP_003843689.1) (SEQ ID NO: 16) MNLTGKTALVTGSTSGIGLGIAQVLAQAGATLILNGFGDVDAAKDAV AQYGKTPGYHGADLSDEAQIADMMRYAESEFGGVDILINNAGIQHVSPI ETFPVDKWNAIIAINLSSVFHTTRLALPGMRARNWGRIINIASVHGLVA SKEKSAYVAAKHGVVGLTKTIALETAQTEITCNALCPGWVLTPLVQQQI DKRIAEGAEPEAARDALLAEKQPSREFVTPEQLGNLALFLCSDGAAQVR GVAWNMDGGWVAQ Acinetobacter calcoaceticus (WP_000163845.1) (SEQ ID NO: 17) MTKLLDGKVAFITGSASGIGLEIAKKFAQEGAKVVISDMNAEKCQETA NSLKEQGFDALSAPCDVTDEDAYKQAIELTQKTFGTVDILINNAGFQHV APIEEFPTAVFQKLVQVMLTGAFIGIKHVLPIMKAQKYGRIINMASING LIGFAGKAGYNSAKHGVIGLTKVAALECARDGITVNALCPGYVDTPLVR GQIADLAKTRNVSLDSALEDVILAMVPQKRLLSVEEIADYAIFLASSKA GGVTGQAVVMDGGYTAQ Psychrobacter immobilis (WP_201584272.1) (SEQ ID NO: 18) MNTYFSELKNKTVVITGSSKGIGKNIALTFAKLEANVVISGRDEATLDA VLKEMHKYNSKCIAVSGNLSDITQIRNLIDKAASQFGTIDVLVNNAGVN IAKPAMEVTEEDWDAVLDLNLKTAFFASQSAAKYMLKQNNGRIINIASQ MAFVGYVKRAAYCSSKGGLVQLTKALAVEWAKQGIRVNAVAPTFIETEL TEKMFIDEAFKKDVDSRILLDGLSQPEDISGAVLYLASNLANFVTGETI KVDGGWTAI Psychrobacter arenosus (WP_201497461.1) (SEQ ID NO: 19) MATQLTQDLTGQVALVTGSASGIGRDIAETYAKAGATVGIADINIEAA QKVVDAIESQGGKALAIEMDVTSEDAVNAGVQKLVDSFGSIDILVSNAG IQIIDPINKMSYDNWKKMLAIHLDGAFLTTKAALQHMYQNDKVGTVIYM GSVHSHEASMYKAPYVTAKHGLLGLCRVLAKEGAEHNVRAHVICPGFVK TPLVEKQIPEQAAEKGISEEAVVNDIMLVNTVDKEFTTVDDIAQLALFL AAFPSNVFTGQSIVASHGWFMN Psychrobacter arcticus (WP_011280696.1) (SEQ ID NO: 20) MATQLQQDLTGKVALVTGAASGIGRDIAETYAKAGAAVGIADINLEA AQKTVDAIEAAGGRALAIAMDVTSEAAVNDGVQRLVDTFGGIDILVSNA GIQIIDPIHKMAFEDWKKMLAIHLDGAFLTTKAAIQHMYKDDKGGTVIY MGSVHSHEASLFKAPYVTAKHGLLGLCRVLAKEGAVHNVRSHVICPGFV KTPLVEKQIPQQAAEKGISEESVVNDIMLVNTVDKEFTTVDDIAQLALF LAAFPTNVFTGQSIVASHGWFMN
[0153] The sequence alignments demonstrate how the positions of corresponding amino acid residues may be numbered differently in BHBDh sequences derived from different organisms. For example, position 175 in SEQ ID NO: 3 (TtBHBDh) corresponds to position 184 in SEQ ID NO: 1 (AfBHBDh), and to position 194 in SEQ ID NO: 4 (DrBHBDh).
[0154]
[0155]
[0156]
[0157]
[0158]
[0159]
[0160]
[0161] In sum, the results in
[0162] Table 1, below, shows the BHB dehydrogenase activities of recombinantly prepared putative BHBDHs
TABLE-US-00003 TABLE 1 BHB Dehydrogenase activities of putative BHBDHs derived from Thermus thermophilus, Geobacillus stearothermophilus and Deinococcus radiotolerans compared to A. faecalis Sample Concentration (mg/mL) Activity (U/mg) Productivity (U/L) GsBHBDh 2.01 11.84 1324 DrBHBDh 0.096 21.58 480 TtBHBDh 1.40 3.711 89 (purified) AfBHBDh 0.904 256.8 26247 (purified)
Example 2—BHBDh Activity
[0163]
Example 3—Thermal Stability
[0164] Next, the thermal stability of some of the new BHBDhs were tested, and compared to the commercially available BHBDh.
[0165] Similarly to the commercially available one shown in
[0166] Under identical reaction conditions, the same testing was performed on TtBHBDh, and results are shown in
[0167] Under identical reaction conditions, the same testing was also performed on GsBHBDh, and results are shown in
[0168] Finally, under identical reaction conditions, the same testing was also performed on DrBHBDh, and results are shown in
[0169]
Example 4—TtBHBDh Mutants
[0170] Preparation and Purification
[0171] A number of different TtBHBDh mutants were prepared, and purified by affinity chromatography and SDS-PAGE. The mutants were Ala175Cys (results shown in
[0172]
[0173]
[0174]
[0175]
[0176]
[0177]
[0178] The constructed mutant TtBHBDHs demonstrated thermal stabilities nearly identical to that of the wild type TtBHBDH, and they are not inactivated with the incubation at 75° C. for 20 min, indicated that these mutations resulted in the increase in enzyme activity by keeping their identical characteristic that TtBHBDh is thermally stable.
[0179] It was found that the mutation on Tyr residue, conserved in Thermus thermophilus (TtBHBDh), Geobacillys stearothermophilus (GsBHBDh) and from Deinococcus radiotolerans (DrBHBDh), improved the enzyme activities.
Example 5—Loop Insertion
[0180]
TABLE-US-00004 (SEQ ID NO: 8) MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGICAPVSASVTYAP GQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLD ILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGW GRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAI CPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLG GAAVFLSSAAADQMTGTTLSLDGGWTAR
[0181]
TABLE-US-00005 (SEQ ID NO: 9) MLKGKKAVVTGSTRGIGLAMATELAKAGADVVINGICAPVSASVTYA PGQPEDIERERSTLESKFGVKAYYLNADLRDAQATRDFIAKAAEALGGL DILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQG WGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNA ICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQL GGAAVFLSSAAADQMTGTTLSLDGGWTAR
[0182] In each of
[0183] Cell Culture and Crude Enzyme Preparation
[0184] Expression vectors of pET28a inserted with either the AfBHBDh 36-48.sub.Cd or AfBHBDh 36-48.sub.Cd S14R/S77R chimeric enzyme harboring a His (6×)-tag on the N-terminal end, were transformed with E. coli LOBSTR-BL21(DE3). The transformed cells single colonies were pre-cultured into 3 mL LB with 50 μg/mL kanamycin under aerobic conditions (280 rpm) at 37° C. Overnight precultures were adjusted as OD660=3.0 and then inoculated as 1% v/v to ZYP-5052 medium (Autoinduction medium; Peptone140 (Fisher Scientific)) with 0.5% glycerol, 0.05% glucose, 0.2% lactose, 50 mM (NH.sub.4)PO.sub.4, 50 mM Na.sub.2HPO.sub.4, and 1 mM MgSO.sub.4) containing 50 μg/mL kanamycin, and were cultivated at 25° C. for 24 h with rotation rate of 170 rpm. After the cultivation, cells were collected and washed with saline (0.85% NaCl).
[0185] Purification
[0186] The pellet was combined with an affinity chromatography buffer (3 mL/g wet cell) and then sonicated (Amp30, 15 seconds on followed by 45 seconds off, performed 3 times, for six rounds). The sonicated mixture was then centrifuged at 16,000 g at 4° C. for 20 minutes. The supernatant was separated from the pellet (containing the inclusion body and cell debris). The supernatant was centrifuged again at 16,000 g at 4° C. for 20 minutes. The supernatant (containing crude enzyme) was separated from the pellet (containing the membrane fraction). The supernatant was filtered and affinity chromatography was performed on a His Trap HP (1 mL) column. The A buffer contained 10 mM imidazole, 500 nM NaCl, and 10 mM HEPES at pH 8.0, while the B buffer contained 500 mM imidazole, 500 nM NaCl, and 10 mM HEPES at pH 8.0. The gradient used was B 0-100%/30 CV.
[0187]
[0188]
TABLE-US-00006 TABLE 2 NAD dependent BHB dehydrogenase activities of AfBHBDh, and two chimeric enzymes, AfBHBDh 36-48.sub.Cd and AfBHBDh 36-48.sub.Cd S14R/S77R Km(mM) Vmax(U/mg) AfBHBDh 1.13 223 AfBHBDh 36-48.sub.Cd 7.81 234 AfBHBDh 36-48.sub.Cd S14R/S77R 3.78 315
[0189]
[0192] Compared with NADH dependent fluorescence of AfBHBDh, the two chimeric enzymes, AfBHBDh 36-48.sub.Cd and AfBHBDh 36-48.sub.Cd S14R/S77R showed 1.5 to 3 fold higher fluorescence intensity. These results revealed that the two chimeric enzymes bind with NAD and are therefore nicotinoproteins, which were created by inserting a 12 amino acid loop region of carveol dehydrogenase derived from Mycobacterium tuberculosis, with or without two amino acid substitutions (Ser14Arg/Ser71Arg).
[0193] The chimeric enzymes, AfBHBDh 36-48.sub.Cd and AfBHBDh 36-48.sub.Cd S14R/S77R show dye-mediated BHB dehydrogenase activities in the absence of NAD.sup.+.
[0194] Mutation Toward TtHBDh for the Recovery of Enzyme Activity
[0195]
[0196]
[0197]
[0198]
[0199] Notably, the Y185W mutation on GsBHBDh, which made its residues at positions 182-185 (CPGW) identical to those at the corresponding positions 184-187 in AfBHBDh, resulted in an approximately 50% increase in activity.
CONCLUSION
[0200] Thermostable BHBDhs which overcome the limitations of the stability of current commercially available BHBDhs, which are not sufficiently thermostable for use in continuous monitoring systems. Considering the invented thermostable enzymes are not inactivated at 45° C., or even 65° C. or 75° C., these thermostable BHBDhs are much stable than the commercially available ones under dried conditions, and also during continuous operation in the solution at around 37° C. for 1-2 weeks, which is necessary for CKM.
[0201] A strategy and construction of nicotinoprotein BHBDhs is also disclosed. These nicotinoprotein BHBDhs bind to NAD in the molecule, like the currently utilized enzyme for continuous glucose monitoring, glucose oxidase, which harbors its redox cofactor (flavin adenine dinucleotide; FAD) tightly bound in its enzyme molecule. Therefore, it is no longer necessary to add NAD.sup.+ in the reaction solution.
[0202] In summary, these inventions solve the current biggest challenge in the limited availability of unstable BHBDh for BHB monitoring, and also requirement of the addition of NAD in the solution. These inventions will realize continuous BHB monitoring (continuous ketone monitoring; CKM). These inventions can be utilized jointly in a single engineered BHBDh, so as to create a thermostable nicotinoprotein BHBDh having a NAD bound tightly thereto.
[0203] Many modifications and other embodiments of the inventions set forth herein will come to mind to one skilled in the art to which the inventions pertain having the benefit of the teachings presented in the foregoing descriptions and the associated drawings. Therefore, it is to be understood that the inventions are not to be limited to the specific embodiments disclosed and that modifications and other embodiments are intended to be included within the scope of the appended claims.
[0204] Although specific terms are employed herein, they are used in a generic and descriptive sense only and not for purposes of limitation. Each embodiment disclosed herein is contemplated as being applicable to each of the other disclosed embodiments. All combinations and sub-combinations of the various elements described herein are within the scope of the embodiments.
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