Preparation Method for Attenuated Rhabdovirus and Application Thereof
20210254102 · 2021-08-19
Assignee
Inventors
Cpc classification
C12N7/00
CHEMISTRY; METALLURGY
A61K45/06
HUMAN NECESSITIES
C12N2760/20021
CHEMISTRY; METALLURGY
C07K2317/14
CHEMISTRY; METALLURGY
C12N2760/20043
CHEMISTRY; METALLURGY
A61K39/3955
HUMAN NECESSITIES
C12N2760/20243
CHEMISTRY; METALLURGY
C12N15/86
CHEMISTRY; METALLURGY
C12P21/02
CHEMISTRY; METALLURGY
International classification
C12N15/86
CHEMISTRY; METALLURGY
A61K39/395
HUMAN NECESSITIES
A61K45/06
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
Abstract
Provided is a preparation method of an attenuated rhabdovirus expression vector, which is used to prepare an attenuated RNA virus recombinant expression vector system for the chimeric expression of an antibody directed against a specific target, wherein the vector system may stably express a corresponding antibody directed against a specific target.
Claims
1. A preparation method of an attenuated virus vector, comprising the following steps: (S1) mixing a nucleotide sequence of a gene encoding a matrix protein of a vesicular stomatitis virus as set forth in SEQ ID NO:1 (M gene of VSV) with a first vector, and adding a transposase to initiate a transposition reaction; (S2) mixing a transposition product obtained in step (S1) with a competent bacterium for transformation; (S3) extracting a plasmid of a bacterium obtained by step (S2) so as to obtain a transpositioned gene encoding the matrix protein of the vesicular stomatitis virus; and (S4) recombining the gene obtained in step (S3) into a second vector so as to obtain the attenuated virus vector; wherein a sequence encoding the second vector comprises a genome sequence of the vesicular stomatitis virus; wherein the first vector is a vector with transposition function; alternatively, the first vector comprises a sequence as set forth in SEQ ID NO:2; alternatively, the second vector comprises a sequence as set forth by a sequence numbered EU849003.1 in GENEBANK.
2. An attenuated virus vector obtained by the preparation method of claim 1.
3. (canceled)
4. The attenuated virus vector according to claim 2, wherein a sequence encoding the attenuated virus vector comprises a sequence as set forth in SEQ ID NO: 4.
5. A cloning backbone vector system, wherein a sequence as set forth in SEQ ID NO:5 is recombined into the vector of claim 4 in the cloning backbone vector system; wherein a position where the sequence as set forth in SEQ ID NO:5 is inserted into a sequence encoding the vector of claim 4 is position 4632 in a sequence as set forth in SEQ ID NO: 4.
6. The cloning backbone vector system according to claim 5, wherein a sequence encoding the cloning backbone vector system comprises a sequence as set forth in SEQ ID NO:6.
7. A method for preparing an attenuated monoclonal virus strain, comprising the following steps: (S1) culturing a first cell to be transfected; (S2) co-transfecting the cell to be transfected in step (S1) with a plasmid mixture of a plasmid comprising a sequence as set forth in SEQ ID NO:3, a plasmid comprising a sequence as set forth in SEQ ID NO:7 (pN), a plasmid comprising a sequence as set forth in SEQ ID NO:8 (pL) and a plasmid comprising a sequence as set forth in SEQ ID NO:9 (pP); (S3) extracting a supernatant of a cell mixture obtained after co-transfection in step (S2) and transfecting a second cell to be transfected with the supernatant; and (S4) culturing and screening the second cell to be transfected that has been transfected in step (S3), so as to obtain the attenuated monoclonal virus strain.
8. The method according to claim 7, wherein the plasmid comprising the sequence as set forth in SEQ ID NO: 3-4, the plasmid comprising the sequence as set forth in SEQ ID NO:7 (pN), the plasmid comprising the sequence as set forth in SEQ ID NO:8 (pL) and the plasmid comprising the sequence as set forth in SEQ ID NO:9 (pP) have a weight ratio of 10:4:1:5.
9. (canceled)
10. The method according to claim 8, wherein the plasmid comprising the sequence as set forth in SEQ ID NO:4 in step (S2) is a plasmid comprising a sequence as set forth in SEQ ID NO:6.
11. The method according to claim 10, wherein an encoding sequence of the plasmid comprising the sequence as set forth in SEQ ID NO:6 in step (S2) further comprises a sequence as set forth in SEQ ID NO:10 and a sequence as set forth in SEQ ID NO:11, alternatively, wherein an encoding sequence of the plasmid comprising the sequence as set forth in SEQ ID NO:6 in step (S2) further comprises a sequence as set forth in SEQ ID NO:12.
12. (canceled)
13. The method according to claim 11, wherein a sequence comprising the sequence as set forth in SEQ ID NO:12 further comprises a signal peptide sequence at 5′-end; the signal peptide sequence is selected from sequences as set forth in SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15 and SEQ ID NO:16; preferably, the signal peptide sequence is a sequence as set forth in SEQ ID NO:15.
14. An attenuated monoclonal virus strain prepared and obtained by the method for preparing an attenuated monoclonal virus strain according to claim 7.
15. A monoclonal antibody secreted by the attenuated monoclonal virus strain according to claim 14.
16. A monoclonal antibody comprising fragments encoded by encoding sequences of a sequence as set forth in SEQ ID NO: 6, a sequence as set forth in SEQ ID NO:10 and a sequence as set forth in SEQ ID NO:11.
17. (canceled)
18. The monoclonal antibody according to claim 16, wherein the encoding sequence further comprises a nucleotide sequence encoding a sequence as set forth in SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15 or SEQ ID NO:16; preferably, the encoding sequence further comprises a nucleotide sequence encoding the sequence as set forth in SEQ ID NO:15.
19. A pharmaceutical composition comprising the monoclonal antibody of claim 15.
20. (canceled)
21. (canceled)
22. (canceled)
23. A method for slowly and continuously killing abnormally proliferating cells, comprising a step of contacting the abnormally proliferating cells with the monoclonal antibody according to claim 15.
24. The method according to claim 23, wherein the abnormally proliferating cells are contained in the body of a patient.
25. The method according to claim 23, wherein the abnormally proliferating cells are selected from tumor cells or tumor tissue-related cells; preferably, the tumor cells are cancer cells; and more preferably, the cancer cells are metastatic cancer cells.
26. (canceled)
27. (canceled)
28. The method according to claim 23, wherein the method further comprises a step of administering a second antitumor therapy.
29. (canceled)
30. A polynucleotide comprising a sequence as set forth in SEQ ID NO:6.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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[0032] Parts A to C of
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DETAILED DESCRIPTION
Definitions
[0035] In the claims and/or specification of the present disclosure, the wording “a”, “an” or “the” may refer to “one”, but may also refer to “one or more”, “at least one” and “one or more than one”.
[0036] As used in claims and specification, the wording “comprise”, “have”, “include” or “contain” means inclusive or open-ended, and does not exclude additional and unreferenced elements, method or steps. Meanwhile, the wording “comprise”, “have”, “include” or “contain” may also mean close-ended, excluding additional and unreferenced elements, method or steps.
[0037] Throughout the application document, the term “about” means that a value includes the standard deviation of the error of the device or method used to determine the value.
[0038] Although the definition of the term “or” as being an alternative only and as “and/or” are both supported by the disclosed content, the term “or” in claims means “and/or” unless it is explicitly indicated that the term “or” only means an alternative or the alternatives are mutually exclusive.
[0039] When used in claims and/or specification, the term “inhibition”, “reduction”, “prevention” or any variation of these terms includes any measurable reduction or complete inhibition for the purpose of achieving the desired results (for example, treatment of tumor). Desired results include but are not limited to the relief, reduction, slowing or eradication of a cancer, a hyperproliferative condition or a symptom related to a cancer, as well as the improved quality or extension of life.
[0040] The vaccination method of the present disclosure may be used for treating tumors in a mammal. Alternatively, the vaccination method of the present disclosure may be used for treating cancers in a mammal. The term “cancer” used in the present disclosure includes any cancer, including but not limited to melanoma, sarcoma, lymphoma, cancer (for example, brain cancer, breast cancer, liver cancer, gastric cancer, lung cancer, and colon cancer) and leukemia.
[0041] The term “mammal” refers to human and non-human mammals.
[0042] The method of the present disclosure comprises administering to a mammal an oncolytic vector expressing a tumor antigen to which the mammal has pre-existing immunity. The term “pre-existing immunity” used in the present disclosure is intended to include the immunity induced by vaccination with an antigen and the immunity naturally existing in a mammal.
[0043] The term “RV virus” used in the present disclosure refers to an attenuated VSV oncolytic rhabdovirus. The term “RV-Mut” refers to an oncolytic rhabdovirus having mutation(s) compared to the wild-type VSV oncolytic rhabdovirus. The term “RV-Mut4” refers to an oncolytic rhabdovirus with mutations at four sites as compared with the wild-type VSV oncolytic rhabdovirus.
[0044] The term “VSV” refers to vesicular stomatitis virus, which is one kind of oncolytic rhabdoviruses and encodes five kinds of proteins, including nucleocapsid protein (N), phosphoprotein (P), matrix protein (M), surface glycoprotein (G) and RNA-dependent RNA polymerase (L).
[0045] The term “PDL1” refers to cell programmed death ligand 1. PDL1 protein is the ligand of PD1, and is associated with the suppression of the immune system and capable of transmitting inhibitory signals. Once PD1 binds to PDL1, a negative regulatory signal will be transmitted to T cells, induce T cells into a resting state and reduce the proliferation of CD8.sup.+ T cells in lymph nodes, thus making T cells unable to recognize cancer cells and reducing the proliferation of T cells or resulting in the apoptosis of T cells.
[0046] The term “vaccine” in the present disclosure refers to an immune formulation for preventing diseases prepared by methods such as artificially attenuating, inactivating or genetically modifying pathogenic microorganisms (such as bacteria) and the metabolites thereof.
[0047] The term “radiotherapeutic agent” in the present disclosure includes drugs that cause DNA damage. Radiotherapy has been widely used in the treatment of cancer and diseases, and includes those commonly referred to as γ-ray and X-ray and/or targeted delivery of radioisotopes to tumor cells.
[0048] The term “chemotherapeutic agent” in the present disclosure is a chemical compound useful for treating cancer. Classes of chemotherapeutic agents include but are not limited to: an alkylating agent, an antimetabolite, a kinase inhibitor, a spindle poison plant alkaloid, a cytotoxic/antitumor antibiotic, a topoisomerase inhibitor, a photosensitizer, an anti-estrogen, a selective estrogen receptor modulator, an anti-progesterone, an estrogen receptor downregulator, an estrogen receptor antagonist, a luteinizing hormone-releasing hormone agonist, anti-androgens, an aromatase inhibitor, an EGFR inhibitor, a VEGF inhibitor, an antisense oligonucleotide that inhibits the expression of gene(s) involved in abnormal cell proliferation or tumor growth. Chemotherapeutic agents that may be used in the treatment method of the present disclosure include a cell growth inhibitor and/or a cytotoxic agent.
[0049] The term “immunotherapeutic agent” in the present disclosure comprises an “immunomodulator” and an agent that facilitates or mediates an antigen presentation that increases a cell-mediated immune response. Among them, the “immunomodulator” comprises an immune checkpoint modulator. For example, immune checkpoint protein receptors and their ligands mediate the suppression of T cell-mediated cytotoxicity and are often expressed by tumors or expressed on anergic T cells in the tumor microenvironment, thus permitting the tumor to evade immune attack. Inhibitors of the activity of immunosuppressive checkpoint protein receptors and their ligands may overcome the immunosuppressive tumor environment, so as to permit cytotoxic T cell attack on tumor. Examples of immune checkpoint proteins include but are not limited to PD-1, PD-L1, PDL2, CTLA4, LAG3, TIM3, TIGIT and CD103. Modulation (including inhibition) of the activity of such protein may be accomplished by an immune checkpoint modulator, which may include, for example, an antibody, an aptamer, a small molecule, a soluble form of a checkpoint receptor protein and the like that target a checkpoint protein. PD-1-targeting inhibitors include the approved drug agents pembrolizumab and nivolumab, while ipilimumab is an approved CTLA-4 inhibitor. Antibodies specific for PD-L1, PD-L2, LAG3, TIM3, TIGIT and CD103 are known and/or commercially available, and may also be produced by those skilled in the art.
[0050] As for the “conventional biological methods in this field” in the present disclosure, please refer to the corresponding methods described in the public publications such as “Current Protocols in Molecular Biology” published by Wiley, “Molecular Cloning: A Laboratory Manual” published by Cold Spring Harbor Laboratory.
[0051] The specific meanings of the nucleotide/amino acid sequences involved in the present disclosure are as follows.
[0052] The sequence as set forth in SEQ ID NO:1 is the nucleotide sequence of the M gene in VSV core backbone (i.e., the M gene in pRV-Core vector).
[0053] The sequence as set forth in SEQ ID NO:2 is the nucleotide sequence of Entranceposon, a vector with the function of transposition.
[0054] The sequence as set forth in SEQ ID NO:3 is the nucleotide sequence of the M gene in the attenuated virus vector obtained by the method of the present disclosure.
[0055] The sequence as set forth in SEQ ID NO:4 is the nucleotide sequence of pRV-core Mut4 vector.
[0056] The sequence as set forth in SEQ ID NO:5 is the nucleotide sequence of 2MCS.
[0057] The sequence as set forth in SEQ ID NO:6 is the nucleotide sequence of pRV-2MCS vector.
[0058] The sequence as set forth in SEQ ID NO:7 is the nucleotide sequence of a plasmid comprising the N gene in VSV core backbone.
[0059] The sequence as set forth in SEQ ID NO:8 is the nucleotide sequence of a plasmid comprising the L gene in VSV core backbone.
[0060] The sequence as set forth in SEQ ID NO:9 is the nucleotide sequence of a plasmid comprising the P gene in VSV core backbone.
[0061] The sequence as set forth in SEQ ID NO:10 is the nucleotide sequence of the heavy chain of the anti-PDL1 antibody.
[0062] The sequence as set forth in SEQ ID NO:11 is the nucleotide sequence of the light chain of the anti-PDL1 antibody.
[0063] The sequence as set forth in SEQ ID NO:12 is the nucleotide sequence of an anti-PDL1 single-chain antibody.
[0064] The sequence as set forth in SEQ ID NO:13 is the amino acid sequence of the signal peptide Sig1 of a secretory anti-PDL1 single-chain antibody.
[0065] The sequence as set forth in SEQ ID NO:14 is an amino acid sequence of the signal peptide Sig2 of a secretory anti-PDL1 single-chain antibody.
[0066] The sequence as set forth in SEQ ID NO:15 is an amino acid sequence of the signal peptide Sig3 of a secretory anti-PDL1 single-chain antibody.
[0067] The sequence as set forth in SEQ ID NO:16 is an amino acid sequence of the signal peptide Sig4 of a secretory anti-PDL1 single-chain antibody.
EXAMPLES
[0068] Other objects, features and advantages of the present disclosure will become apparent from the following detailed description. However, it should be understood that the detailed description and specific Examples (although representing the specific embodiments of the present disclosure) are given for explanatory purposes only, since various changes and modifications made within the spirit and scope of the present disclosure will become apparent to those skilled in the art after reading this detailed description.
[0069] The sources of reagents and consumables used in the present disclosure are as follows.
[0070] PBS (Hyclone SH30256.01), DMEM high glucose medium (Gibco C11995500), RPM11640 (Gibco C22400500CP), double antibody (Gibco 15140-122), fetal bovine serum (Gibco 10099141), Opti-MEM® I Reduced Serum Medium (Gibco 31985-070), Lipofectamine LTX (Invitrogen 15338100), 96-well cell culture plate (Corning 3599), 6-well cell culture plate (Corning 3516), 0.22 μm filter (Millipore SLGP033rb), DMSO (Macklin D806645), and thiazolyl blue (Sigma M2128).
[0071] Unless otherwise specified, all the reagents mentioned in the Examples of the present disclosure are commercially available.
[0072] The method for virus packaging involved in the present disclosure was as follows.
1. BSR-T7 cells were seeded in a 6-well plate to enable the cell density to reach 3×10.sup.5 cells/well. A poxvirus expressing T7 polymerase was added 14 h to 16 h after the seeding, and transfection was carried out after the cells were infected with the virus for 6 h.
2. The plasmids were diluted with 200 μl of opti-MEM culture medium, in which the total weight of the plasmids was 5 μg, and the mass ratio of the plasmids was as follows: pRV-core:pP:pN:pL=10:5:4:1. 7.5 μl of the transfection reagent PLUS Reagent (Life Corporation) was further added. 10 μl of Lipofectamine LTX was diluted with 200 μl of the culture medium. pN represented a plasmid expressing the nucleoprotein of the rhabdovirus, pL represented a plasmid expressing the polymerase protein of the rhabdovirus, pP represented a plasmid expressing the phosphoprotein of the rhabdovirus, and the parent vector corresponding to the three plasmids (pP, pL and pN) was pCAGGS (purchased from ATCC).
3. 200 μl of LTX mixed liquid and 200 μl of DNA mixed liquid were mixed and incubated at room temperature for 15 min.
4. The culture medium in the 6-well plate was replaced with Opti-MEM culture medium. The resulting mixed liquid obtained in step 3 was added dropwise into the 6-well plate in which cells were cultured, and the 6-well plate was shaken gently so as to allow the mixed liquid to be evenly distributed in the 6-well plate.
5. After 6 h to 8 h of transfection, the transfection reagent was aspirated and removed, and 3 ml of fresh complete culture medium was added.
6. The cell supernatant was harvested after 72 h and filtered with a 0.22-μm filter.
Example 1: Establishment of a Screening Library of Attenuated Virus Vectors
[0073] In this Example, a kit produced by Thermo Co. (i.e., phage Mu transposition technique) was used, and this technique had been widely used in the research of the functions of various viral genomes and the interaction between viruses and hosts. The principle of establishing a random mutation library by using the phage Mu transposition kit was as follows. Phage Mu transposon-mediated high-density random insertion mutagenesis technique was a method of randomly inserting a 15 bp short nucleotide sequence (5′-NNNNNTGCGGCCGCA-3′, wherein the five N represented five repeated base sequences in the target DNA sequence) in DNA so as to generate a gene insertion mutant library with high storage capacity. The corresponding virus mutant library could be obtained by the combination of such technique and genetic manipulation techniques related to virus. Further combination of techniques such as PCR amplification, capillary electrophoresis, fluorescence-labeled DNA sequencing technique and fragment length polymorphism analysis (AFLP) enabled accurate identification of the number of mutations and the insertion sites. The plasmid DNA involved in the transformation was M1-M mut. That is, the mutation sequences in the mutation sequence library of the M gene were integrated into the M1-kan vector, thereby forming a mutation library of M gene (please refer to the standard instruction of Thermo Scientific Mutation Generation System Kit for the experimental steps). With the combined action of the transposon and the transposase, fragments would be randomly inserted among the bases of M gene in the vector plasmid carrying the target M gene, and finally, random mutations of orders of magnitude were generated in M gene. 5′-TGCGGCCGCA-3′ (a specific primer) was used to amplify the mutated M gene, a mutation library was established, and the genes in the M gene library were further digested and cloned into the pRV-core core backbone plasmid.
[0074] The experimental method and steps for establishing a virus library were as follows.
1. The reaction was carried out in a centrifuge tube, wherein the transposase should be added finally. The in-vitro transposition reaction system was as shown in Table 1.
TABLE-US-00001 TABLE 1 In-vitro transposition reaction system Reagents Volume Target DNA (M gene in the core backbone of 1 μl to 14 μl rhabdovirus) 5X transposase reaction buffer 4 μl 100 ng of M1-Kan transposon (Entranceposon) 1 μl MuA transposase 1 μl H.sub.2O added to a total volume of 20 μl
[0075] The positive control DNA (that is, 370 ng (1 μl) of pBlank) provided in Thermo Scientific Mutation Generation System Kit (purchased from Thermo Co., Catalog No. F701) was used for a positive control reaction.
2. The reactants were mixed gently.
3. The resultant was incubated at 30° C. for 1 hour for transposition.
4. The resultant was incubated at 75° C. for 10 minutes to inactivate the transposase.
5. A competent bacterium was prepared, wherein the bacterium was derived from DH5a. The reaction mixture obtained in step 4 was diluted 10 times in deionized water and the maximum volume used each time was 10 μl. Or, the DNA in the reaction mixture was first precipitated and then suspended in deionized water and used for electroporation. As for chemical transformation, 5 μL to 10 μL of said reaction mixture was used each time.
6. 10 μg/ml chloramphenicol or 10 μg/ml kanamycin was added on an agar plate, and an antibiotic against the target DNA clone was further added.
7. Plasmids were extracted from the colonies on the plate by using a standard alkaline lysis method or any commercial DNA preparation kit.
8. The plasmid DNA was digested with restriction enzymes. The monoclonal restriction site (NotI) of the shuttle fragment (provided by Thermo Scientific Mutation Generation System Kit) was determined and the plasmid was digested with two kinds of restriction enzymes to obtain a part of the vector backbone, so as to distinguish these fragments via agarose gel electrophoresis.
9. The presence of the shuttle vector was detected by standard agarose gel electrophoresis, and the pTrans plasmid of the aforementioned shuttle vector was obtained by gel recovery.
10. The extracted DNA fragments were cloned into a new cloning vector M1-CAM.sup.R (provided by the kit).
11. Transformation was carried out on an agar plate which was supplemented with 10 μg/ml chloramphenicol or 10 μg/ml kanamycin and further added with an antibiotic against the cloning vector.
12. Colonies were picked from the plate and subjected to amplification. The plasmid DNA was extracted by using a standard alkaline lysis method or any commercial DNA preparation kit.
13. The plasmids were digested with NotI to remove the shuttle vector. Standard agarose electrophoresis could be used to separate the resulting fragments. Fragments with the size of the target DNA were extracted from the cloning vector.
14. The enzyme-digested products obtained by the digestion of NotI were used for ligation. If the enzyme-digested products were not subjected to separation by agarose electrophoresis, the concentration of the DNA mixture was adjusted to 1 ng/ml to 5 ng/ml in order to facilitate the self-ligation of the enzyme-digested products.
15. Escherichia coli DH5α competent cells were used for transformation.
16. The plate was merely added with an antibiotic for screening the cloning vector. Neither chloramphenicol nor kanamycin was added after the shuttle vector was removed via the digestion by NotI.
[0076] 17. Colonies were picked from the plate, the bacteria were cultured, the plasmid DNA was extracted, and M mut gene fragment was further obtained from the M1-M mut plasmid by enzyme digestion. The establishment of the mutation library of M gene was completed in accordance with the above steps.
[0077] The steps of the virus rescue of the attenuated strain were as follows. After the establishment of the mutation library, the mutant fragment M1-M mut was further cloned into the backbone vector pRV-core, wherein pRV-core was the core backbone vector for virus packaging, the whole backbone of the virus was obtained by gene synthesis and the sequence was as set forth by the sequence of pRV-4Mut listed in the present disclosure, and the virus gene corresponding to the pRV-core core backbone was synthesized with reference to the gene of the MuddSummer strain of VSV (GenBank No.: EU849003.1). As compared with the pRV-core plasmid, pRV-4Mut only had non-synonymous mutations at four amino acid sites in M gene, and pRV-core was the original backbone vector. The wild-type M gene in the target vector had been removed via double enzyme digestion, a core backbone vector library comprising the new mutation library of M gene was formed, and this mutant plasmid library was named pRV-core Mut. Further, with the aid of the helper plasmid, a variety of recombinant RV-Mut attenuated strains were obtained by virus rescue in BSR-T7 cells.
[0078] The specific steps of the aforementioned virus rescue were as follows. A calcium phosphate transfection kit was used, and BSR-T7 cells (purchased from ATCC) were transfected with 5 μg of the backbone plasmid pRV-core Mut by cell transfection technique. The aforementioned plasmids were diluted with 200 μl of opti-MEM culture medium, the total weight of the plasmids was 5 μg, the ratio of the plasmids was as follows: pRV-core:pP:pN:pL=10:5:4:1. 7.5 μl of the transfection reagent PLUS Reagent (Life Corporation) was further added. 10 μl of Lipofectamine LTX was diluted with 200 μl of the culture medium. Among them, pN represented a plasmid expressing the nucleoprotein of the rhabdovirus, pL represented a plasmid expressing the polymerase protein of the rhabdovirus, pP represented a plasmid expressing the phosphoprotein of the rhabdovirus, wherein the parent vector corresponding to the three plasmids (pP, pL and pN) was pCAGGS (purchased from ATCC). Cells were washed twice by PBS after 6 hours and further cultured in DMEM supplemented with 10% fetal bovine serum for 3 days. The resulting cell supernatant were co-incubated with Vero cells at 37° C. for 3 days, and the virus rescue was confirmed by observing the green fluorescence in the cells under a fluorescence microscope. Further, the rhabdoviruses in the rescued mutant rhabdovirus library were passaged in Vero cells, and monoclonal virus strains were selected in the established plaque screening system.
[0079] During the reaction of this transposition system, the in-vitro transposon was not affected by exogenous DNA and the accompanying minor impurities. The optimal amount of the target DNA for each reaction depended on the size of the plasmid. The amount of the target DNA could be calculated by the following formula: the amount of the target DNA (ng)=the size of the plasmid used for reaction (kb)×40 ng.
[0080] DNA and the shuttle vector could be inserted into the cloning vector together via DNA cloning technique. DNA was cut from the cloning vector by the restriction enzyme, and there was no such restriction site on the shuttle vector. In addition, the target fragment could be separated by agarose gel electrophoresis due to the distinct size difference between the cloning vector and the inserted DNA.
[0081] In order to obtain clones with the maximum amount of insertion mutation, transformation efficiency was also a very important consideration (for example, for pUC19 plasmid, electroporated cells>10.sup.8 cells/μg). Therefore, electroporation method was the best transformation method selected by the present inventors. Meanwhile, in view of the fact that the shuttle vector comprised inverted terminal repeats (50 bp), RecA produced by Escherichia coli was used as the homologous recombinase so as to avoid potential homologous recombination between these repeats.
[0082] After the pRV-core Mut plasmid was obtained, the specific steps of virus rescue were as follows. 5×10.sup.6 BSR-T7 cells were seeded evenly in a 10-cm cell culture dish and cultured overnight in DMEM supplemented with 10% fetal bovine serum until the cell density reached 80%. Cells were washed with serum-free DMEM twice one hour before transfection. Using a calcium phosphate transfection kit, cells were transfected with 5 μg of the backbone plasmid pRV-core Mut, 5 μg of pN (a plasmid expressing the nucleoprotein of the rhabdovirus), 2.5 μg of pL (a plasmid expressing the polymerase protein of the rhabdovirus), 2.5 μg of pP (a plasmid expressing the phosphoprotein of the rhabdovirus), and the parent vector corresponding to the three plasmids (pP, pL and pN) was pCAGGS (purchased from ATCC). After 2 h to 3 h, cells were washed twice with PBS and cultured in DMEM supplemented with 10% fetal bovine serum for 3 days. The resulting cell supernatant were co-incubated with Vero cells at 37° C. for 3 days, and the virus rescue was confirmed by observing the green fluorescence in the cells under a fluorescence microscope. Further, the rhabdoviruses in the rescued mutant rhabdovirus library were passaged in Vero cells, and monoclonal virus strains were selected in the established plaque screening system. Furthermore, the selected monoclonal virus strains were used to infect new Vero cells, and monoclonal virus strains with reduced ability to lyse cells were selected.
[0083] The specific operating steps of the cloning of a backbone plasmid system were as follows. The gene fragment 2MCS (SEQ ID NO:5) was cloned to the vector pRV-core Mut4 by gene synthesis technique, and the corresponding core backbone was pRV-core (pRV-core Mut4 had mutations at four sites on the M gene corresponding to the pRV-core plasmid. Specifically, in M protein, amino acid G at position 21 was mutated to amino acid E, amino acid M at position 51 was mutated to amino acid A, leucine L at position 111 was mutated to phenylalanine F, and valine V at position 221 was mutated to phenylalanine F), and the new backbone obtained from cloning was named pRV-2MCS. The upstream restriction site of the clone was XhoI and the downstream restriction site was NotI (see
[0084] Experimental results:
[0085]
[0086] The specific steps of cloning the pRV-2MCS core backbone plasmid were as follows. The gene fragment 2MCS was digested and cloned into the plasmid pRV-core Mut4 (in the spacer sequence between G gene and L gene of the virus) by gene synthesis technique, and the new core backbone plasmid obtained after the recombination was pRV-2MCS (
Example 2: Simultaneous Expression of Specific Antibodies by Utilizing the Attenuated Virus Vector System pRV-2MCS
[0087] Experimental methods: Based on the plasmid system pRV-2MCS prepared in Example 1, the sequence of the heavy chain and the sequence of the light chain of an anti-PDL1 antibody were respectively cloned into the backbone plasmid pRV-2MCS to form new cloning vectors pRV-PDL1-H and pRV-PDL1-L. The recombinant viruses were rescued, and the corresponding intact and active anti-PDL1 antibodies were expressed and secreted in engineered Vero cells at different ratios of the heavy chain of the anti-PDL1 antibody to the light chain of the anti-PDL1 antibody.
[0088] The specific steps of the above-mentioned method were as follows. The complete sequence of the anti-PDL1 antibody was consistent with the anti-PDL1 antibody from Roche Co. The heavy chain gene of the anti-PDL1 antibody (PDL1-H) (gene synthesis was completed by Synbio Technologies) was cloned into the backbone plasmid pRV-2MCS at specific restriction sites (NheI and NotI) to form a new core backbone plasmid pRV-PDL1-H. Similarly, the synthesized sequence of the light chain of the anti-PDL1 antibody was cloned into the plasmid pRV-2MCS by double restriction digestion at specific restriction sites (XhoI and AscI) to form a new core backbone plasmid pRV-PDL1-L. The recombinant viruses RV-PDL1-H (capable of the chimeric expression of the heavy chain of the anti-PDL1 antibody) and RV-PDL1-L (capable of the chimeric expression of the light chain of the anti-PDL1 antibody) were obtained by the two backbone plasmids formed above via the virus rescue system and the method as described in Example 1. Further, the optimal infection ratio of the virus expressing the heavy chain of the anti-PDL1 antibody to the virus expressing the light chain of the anti-PDL1 antibody was further determined by immunoblotting assay.
[0089] As shown by the experimental results in part A of
Example 3: Stability of the Attenuated Virus Vector System pRV-2MCS
[0090] The gene sequences of GFP and RFP were simultaneously cloned into the attenuated virus vector system pRV-2MCS to form a new cloning vector pRV-2MCS-GFP-RFP. After the recombinant virus was rescued, the engineered Vero cells were co-incubated with the recombinant virus for 12 h, and then both green fluorescence and red fluorescence could be observed in most of the cells in a fixed field of view under a fluorescence microscope, as shown in part C of
[0091] Furthermore, after the recombinant pRV-2MCS-GFP-RFP was passaged five times, the corresponding detection of the expression of the exogenous genes showed no difference in expression efficiency when compared with the first generation infection, thereby further proving the stability and high efficiency of the pRV-2MCS rhabdovirus-based system.
Example 4: Selection of Exogenous Anti-PDL1 Single-Chain Antibody Sequence Integrated into the Attenuated Virus Vector System pRV-2MCS
[0092] Based on the anti-PDL1 antibody known in the prior art, the anti-PDL1 amino acid sequence in the AVTM recombinant vector expressing exogenous anti-PDL1 single-chain antibody (RV-scFV-PDL1) was optimized.
[0093] Experimental results: As shown in part A of
Example 5: Characteristics of the Attenuated Rhabdovirus Strain RV-Mut4 Screened by the Attenuated Strain Screening System
[0094] Attenuated rhabdovirus strains with different point mutations, including RV-M51R (a single-mutant strain), RV-M51R-V221F (a double-mutant strain), RV-G21E-M51R-L111F (a triple-mutant strain), RV-G21E-M51A-L111F (a triple-mutant strain), RV-G21E-M51A-L111F-V221F (a quadruple-mutant strain, i.e., RV-Mut4) were obtained by screening according to the screening method described in Example 1 and the attenuated strain screening system as shown in
[0095] The specific method and steps used in this Example were as follows.
[0096] MTT experimental method:
[0097] 1. 100 μl of LLC cell suspension was added to each well of a 96-well culture plate, so as to enable the cell density to reach 1×10.sup.4 cells/well, The cells were incubated at 37° C. in 5% CO.sub.2 atmosphere for 16 h.
[0098] 2. The viruses were respectively diluted to 10.sup.4 PFU, 10.sup.3 PFU, 10.sup.2 PFU and 10.sup.1 PFU, the diluted resultant of each gradient was inoculated into 4 wells (100 μl per well). The cells were incubated at 37° C. in 5% CO.sub.2 atmosphere for 40 h.
[0099] 3. The supernatant in the 96-well culture plate was discarded, fresh culture medium was added, and MTT solution was added (20 μL/well). The cells were incubated at 37° C. in 5% CO.sub.2 atmosphere for 4 h.
[0100] 4. The 96-well plate was centrifuged at room temperature for 5 minutes and the rotation speed was set to 2500 rpm/minute.
[0101] 5. A 1-mL disposable sterile syringe was used to gently aspirate the supernatant.
[0102] 6. DMSO was added to each well (100 μl/well), and the 96-well plate was left to stand at 37° C. for 10 minutes.
[0103] 7. A multifunctional microplate reader was used to determine the OD value of each well at a wavelength of 570 nm or 490 nm after the 96-well plate was shaken for 2 minutes.
[0104] The total number of GFP-positive cells was determined by flow cytometry.
1. 100 μl of Vero (LLC/Hela/MEF) cell suspension was added to each well of a 48-well culture plate, so as to enable the cell density to reach 2×10.sup.4 cells/well. The cells were incubated at 37° C. in 5% CO.sub.2 atmosphere for 16 h.
2. Specific mutant virus strains (100 PFU) were respectively added to each well, each kind of virus was added to 21 wells, and 12 wells were set as the blank control group.
3. Cells were respectively harvested at each time point (24 h, 36 h, 48 h, 60 h, 72 h, 84 h, and 96 h), the cells in three wells were harvested for each kind of virus and the cells in one well were harvested for the blank control group. The obtained cells were all re-suspended with 400 μl of PBS, 100 μL of the cell suspension was taken and analyzed by using Life Launch Attune NxT-Next flow cytometer, and the total number of GFP-positive cells was counted.
[0105] As shown in part A of
[0106] Experimental results: As shown by part A to part C of
[0107] In summary, among the above-mentioned virus strains, RV-Mut4 had the most prominent characteristics. The four amino acid mutations in this strain did not make the virus more virulent and retained the specificity in killing tumor cells at the same time. Meanwhile, although the time point when tumor cells were lysed was found to be delayed at the cellular level in vitro, the ability to specifically kill tumor cells was completely retained. Further, RV-Mut4 showed no toxicity to normal cells, which fully conformed to the requirements for biosafety.
Example 6: Expression of RV-scFV-PDL1 Vector in Vero Cells
[0108] Experimental procedures: By using the pRV-2MCS system as shown in
[0109] Experimental results: As shown in
Example 7: Effect of Signal Peptides on RV-scFV-PDL1
[0110] By chimerizing the variable regions of the heavy chain and light chain of the exogenous immunoglobulin in an established non-truncated negative-strand RNA vector system AVTM, a specific linker sequence (15 amino acids) for the variable regions of the heavy chain and the light chain was designed, that is, internationally accepted (G4S).sub.3 was used as a flexible polypeptide linker, and four different signal peptides for secretory antibody were designed at the same time. The effect of each signal peptide on the secretion efficiency of the single-chain antibodies was compared with other signal peptides at cellular level in vitro (293T cells were subjected to transient transfection with the plasmid which was then expressed in the system).
[0111] The specific experimental procedures of the above-mentioned experiment were as follows.
1. Four signal peptide sequences (Sig1, Sig2, Sig3 and Sig4, please refer to Table 2 for their sequences, four base sequences in total) were added at the N-terminal of the sequence of the anti-PDL1 single-chain antibody, respectively. These four gene sequences were respectively cloned into the pcDNA3.1 backbone (purchased from ATCC Co.) by utilizing molecular cloning technique, so as to finally form four eukaryotic expression vectors, that is, pcDNA3.1-sig1-scFV-PDL1, pcDNA3.1-sig2-scFV-PDL1, pcDNA3.1-Sig3-scFV-PDL1, and pcDNA3.1-Sig4-scFV-PDL1.
2. After 293T cells were transfected with the above four vectors for 48 h, the supernatant containing the secreted products and cells were collected respectively. Samples were prepared by the lysis of cells with a loading buffer, and the expression level of the anti-PDL1 single-chain antibody in the supernatant was determined by immunoblotting technique (pcDNA3.1 vector carried a His tag, and the expression of the target protein was detected by an anti-His tag antibody).
TABLE-US-00002 TABLE 2 Amino acid sequences of signal peptides for secretory antibody Sig1 signal peptide MLLTLIILLPVVSK Sig2 signal peptide MWLQSLLLLGTVACSIS Sig3 signal peptide MYRMQLLSCIALSLALVTNS Sig4 signal peptide METDTLLLWVLLLWVPGSTG
[0112] The experimental results were as shown in
[0113] Four signal peptides for antibody secretion as mentioned in Table 2 were respectively integrated into the pRV-core Mut4 plasmid system via molecular cloning technique. The rescue process of the recombinant virus was completed in accordance with the following virus rescue technique. Vero E6 cell line was infected with four recombinant viruses with a multiplicity of infection (MOI) of 0.01. Cell supernatant was collected 24 hours later, and the expression level of the single-chain antibody in the supernatant was detected.
[0114] The specific steps of the above-mentioned virus rescue technique were as follows. 5×10.sup.6 BSR-T7 cells were evenly seeded in a 10-cm dish and cultured overnight with DMEM supplemented with 10% fetal bovine serum until the cell density reached 80%. Cells were washed with serum-free DMEM twice one hour before transfection. Using a calcium phosphate transfection kit, cells were transfected with 5 μg of the backbone plasmid pRV-core Mut4 (or a recombinant core backbone plasmid), 5 μg of pN (a plasmid expressing the nucleoprotein of the rhabdovirus), 2.5 μg of pL (a plasmid expressing the polymerase protein of the rhabdovirus), and 2.5 μg of pP (a plasmid expressing the phosphoprotein of the rhabdovirus). After 2 h to 3 h, cells were washed twice with PBS and cultured in DMEM supplemented with 10% fetal bovine serum for 3 days. The resulting cell supernatant were co-incubated with Vero cells at 37° C. for 3 days. The expression of the viruses rescued in BSR-T7p cells was determined by immunofluorescence assay with an FITC-labeled rhabdovirus G protein-specific antibody.
[0115] The results of virus rescue were as shown in
[0116] Further, the attenuated strain RV-scFV-PDL1 (sig3) expressing sig3 as the signal peptide was inoculated via subcutaneous injection adjacent to the tumor site and intratumoral injection. Two days after the inoculation, the serum and local tumor tissues of the model mice were respectively collected. Tissue samples were ground, and the expression of the antibody and the presence of virus-related proteins at different sites of the tumor-bearing mouse model were respectively determined by immunoblotting.
[0117] The experimental results were as shown in
Example 8: Test and Evaluation of the Immunotherapy Efficacy of RV-scFV-PDL1 in Metastatic Non-Small Cell Lung Cancer Model
[0118] A metastatic non-small cell lung cancer model was first established. As shown in part A of
[0119] Experimental results: As shown in part A of
[0120] Part A of
[0121] Further, the lung tissues of the model mice in the experimental group and the control groups were incised, and the metastasis of cancer cells (LLC-JSP) in the lung tissues (cancer cells that were subcutaneously inoculated and appeared in lung tissues due to metastasis) of the model mice was observed under a fluorescence microscope and recorded. It could be seen from part A of
Example 9: Test and Evaluation of the Immunotherapy Efficacy of RV-scFV-PDL1 in Colon Cancer Model
[0122] A tumor cell line expressing human PDL1 (MC38-hPDL1) was first established. Cells were inoculated to C57BL/6 mice to establish a humanized colon cancer mouse model. The efficacy of RV-scFV-PDL1 enabling the chimeric expression of a single-chain antibody universal for human and mouse was further verified.
[0123] The establishment of this colon cancer model was based on the knockout of murine PDL1 gene in colon cancer cell line (MC-38) and the subsequent chimeric expression of human PDL1. The steps and method for establishing the model were shown as below.
[0124] Step 1: Murine PDL1 (mPDL1) gene was knocked out by CRISPR-Cas9 method. According to CRISPR-Cas9 technique, a short guide RNA (sgRNA) was first designed and the designed sequence was as follows: 5′-GCTTGCGTTAGTGGTGTACT-3′. The synthesized double-strand DNA was inserted into the sgRNA expression vector (FG-BB-U6-sgRNA) via BbsI site. Then, MC-38 cells were co-transfected with the resulting vector and a Cas9-expressing plasmid (FG-hEF/HTLV-Cas9-PGK-Puro-WPRE). After 60 hours, a screening with puromycin (puro) lasted for 48 hours (for the expression vector, the transfection method and the screening method mentioned herein, please refer to Scientific Reports, Volume 7, Article number: 42687, Anfei Huang et al., Feb. 16, 2017).
[0125] Afterwards, the culture was expanded to obtain an mPDL1 gene-knockout cell bank, DNA was extracted, and PCR was performed with the following primers: forward primer: 5′-TGGTTCCTTTTAAACAAGACTGGG-3′, reverse primer: 5′-CGCACCACCGTAGCTGATTA-3′. PCR products were collected and subjected to TA cloning, and the resultants were then sent for sequencing.
[0126] Step 2: A lentiviral system was used to enable the overexpression of human PDL1 in such mPDL1 KO MC-38 cells. Human PDL1 gene was first cloned and inserted into the adenovirus expression vector FG-hEF/HTLV-human CD274-PGK-Puro-WPRE, and HEK293T cells were then transfected with the vector to enable virus packaging. MC-38 mPDL1 KO cells were infected with the resulting virus for 48 h, and a screening with puromycin lasted for 48 hours.
[0127] The knockout efficiency of mPDL1 was determined by sequencing method. Interferon-γ (IFN-γ) was capable of stimulating the expression of PDL1 significantly. The expression levels of PDL1 in normal cells and mPDL1 gene-knockout cells were respectively determined by flow cytometry before and after IFN-γ stimulation, and the results further indicated the successful knockout of mPDL1 gene in MC-38 cells.
[0128] Similarly, the expression level of hPDL1 (overexpressed by lentivirus) in mPDL1 KO MC-38 cells was determined by flow cytometry. The results of the flow cytometry indicated that hPDL1 could be expressed normally in this cell line.
[0129] In summary, a tumor cell line expressing human PDL1 (MC-38-hPDL1) was established after the verification of each step. By recording the valid survival period of the tumor-bearing model mice that had received treatment, it was further found that the survival rate of the model mice in RV-scFV-PDL1 treatment group was the highest and approximately 70% of the model mice maintained a normal life state in nearly two months (as shown in
[0130] The above-mentioned Examples of the present disclosure are merely exemplified to clearly illustrate the present disclosure rather than limitations to the embodiments of the present disclosure. For those of ordinary skill in the art, other changes or modifications in different forms may also be made based on the foregoing description. It is not necessary and impossible to enumerate all the embodiments. Any modification, equivalent replacement and improvement made within the spirits and principles of this disclosure shall be encompassed in the protection scope of the claims of the present disclosure.