Rotaxane-type probe for molecular imaging
11045561 · 2021-06-29
Assignee
Inventors
Cpc classification
G01R33/282
PHYSICS
G01R33/5605
PHYSICS
C08L101/00
CHEMISTRY; METALLURGY
G01N33/0021
PHYSICS
C08B37/0015
CHEMISTRY; METALLURGY
G01R33/5601
PHYSICS
International classification
A61K49/18
HUMAN NECESSITIES
C08L101/00
CHEMISTRY; METALLURGY
C08G83/00
CHEMISTRY; METALLURGY
Abstract
The invention provides a novel method for synthesizing hyperpolarized xenon-129 (HP Xe) biosensors by using pseudo-rotaxane structures of gamma-cyclodextrin. These supramolecular complexes form novel ternary structures in the presence of HP Xe which can be detected via .sup.129Xe MR spectroscopy and imaging techniques. The rotaxane-type complex can be tagged with an affinity label for detecting a target in a biological subject.
Claims
1. A supramolecular complex useful as a biosensor, comprising: (a) a macrocycle host defining a hydrophobic cavity; (b) an axle comprising a molecular chain functionalized with an affinity tag for a target inside a biological subject, wherein the affinity tag is at one or both ends of the molecular chain, and wherein the axle is threaded through the macrocycle cavity; and (c) a xenon atom, wherein the cavity of the macrocycle host is large enough to accommodate and reversibly encapsulate both a cross section of the axle and the xenon atom at the same time.
2. The supramolecular complex of claim 1, wherein the macrocycle host is water-soluble.
3. The supramolecular complex of claim 1, wherein the xenon atom is dissolved in a solution.
4. The supramolecular complex of claim 1, wherein the macrocycle host defines a cavity that is larger than about 6.5 Å in inner diameter.
5. The supramolecular complex of claim 1, wherein the macrocycle host is a cyclodextrin.
6. The supramolecular complex of claim 5, wherein the macrocycle host is a γ-cyclodextrin.
7. The supramolecular complex of claim 1, wherein the axle comprises an alkyl chain.
8. The supramolecular complex of claim 7, wherein the axle has at least five carbons in its backbone.
9. The supramolecular complex of claim 1, wherein the axle is capped with a hydrophobic end group at each of its two ends, at least one of the end groups being or comprising the affinity tag.
10. The supramolecular complex of claim 1, wherein the affinity tag comprises a ligand selected for its affinity for a biological target inside a subject.
11. The supramolecular complex of claim 1, wherein the affinity tag comprises a detectable label.
12. The supramolecular complex of claim 11, wherein the affinity tag comprises a fluorophore.
13. The supramolecular complex of claim 1, wherein the affinity tag comprises thioflavin T.
14. The supramolecular complex of claim 1, detectable by xenon-based magnetic resonance imaging or spectroscopy.
15. A biosensor comprising: (a) a cyclodextrin molecule defining a cavity; (b) an alkyl chain molecule functionalized with an affinity tag at one or each of its two ends, wherein the affinity tag has an affinity for a target inside a biological subject, and wherein the alkyl chain molecule is threaded through the cavity in the cyclodextrin; and (c) a xenon atom in the cavity of the cyclodextrin.
16. The biosensor of claim 15, wherein the affinity tag comprises a detectable label.
17. The biosensor of claim 15, wherein the affinity tag is part of an end group that also serves as a stopper to prevent de-threading.
18. The biosensor of claim 17, wherein the end group is hydrophobic.
19. The biosensor of claim 17, wherein the end group comprises an ethylimidazolium group or an anthracene group.
20. The biosensor of claim 15, wherein the xenon atom is xenon-129.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawings will be provided by the Office upon request and payment of the necessary fee.
(2) The objects and features of the invention can be better understood with reference to the drawings described below, and the claims. The drawings are not necessarily to scale, emphasis instead generally being placed upon illustrating the principles of the invention. In the drawings, like numerals are used to indicate like parts throughout the various views.
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DETAILED DESCRIPTION OF THE INVENTION
(14) Unless otherwise noted, technical terms are used according to conventional usage.
(15) As used in the specification and claims, the singular form “a”, “an”, or “the” includes plural references unless the context clearly dictates otherwise. For example, the term “a cell” includes a plurality of cells including mixtures thereof.
(16) As used herein, “about” means within plus or minus 10%. For example, “about 1” means “0.9 to 1.1”, “about 2%” means “1.8% to 2.2%”, “about 2% to 3%” means “1.8% to 3.3%”, and “about 3% to about 4%” means “2.7% to 4.4%.”
(17) As used herein, the term “subject” refers to any animal (e.g., a mammal), including, but not limited to humans, non-human primates, rodents, canines, and the like, which is to be the recipient of a particular treatment. Typically, the terms “subject” and “patient” are used interchangeably herein in reference to a human subject.
(18) According to principles of the present invention, a xenon-capturing scaffold or framework is conjugated to affinity tags to bind a wide variety of targets inside a subject, where such targets can be biological markers that indicate diseases or disease-prone conditions. The detection of such targets can then be used for diagnostic or monitoring purposes. Examples of such targets include various reporter gene expressions, cancer-associated receptors (HER2 for breast cancer diagnosis, for instance), pathogen, toxins, and so on. Preferred embodiments of affinity tags include detectable labels, e.g., fluorescent dyes or radioactive isotopes.
(19) Referring to
(20) According to a principle of the present invention, macrocycles that are too large to bind xenon on their own, such as the cyclodextrins, could be threaded with an axle molecules, such as long alkyl chains, to create rotaxane-type, including proto-rotaxane and pseudo-rotaxane, complexes that are capable of forming a ternary complex with xenon (
(21) The affinity tag can be conjugated or otherwise affixed to either part of the rotaxane-type supramolecular complex of the present invention, i.e., the macrocycle host or the axle molecule. However, according to an embodiment of the invention, the rotaxane-type biosensor of the invention is not synthesized by covalently tethering the affinity tag to the xenon host; rather, the affinity tag is conjugated to the axle bar, and the tethering of the affinity tag to the macrocycle is then accomplished via classic supramolecular chemistry relying primarily on hydrophobic interactions, which, coincidentally, are the same forces that are required for efficient xenon binding.
EXAMPLES
Example 1
(22) In the following exemplary embodiments, we found: the rotaxane-type biosensor can be readily synthesized and conjugatable; and the molecule is MR detectable by displaying a HyperCEST effect. Towards the first aspect, we found that pillararenes were relatively easy to synthesize and CB and CD macrocycles are both commercially available. Each of the host macrocycle molecules listed in
(23) For the HP-Xe studies, we used a custom-built fritted phantom inside of a custom dual tuned .sup.1H/.sup.129Xe radiofrequency (RF) coil to acquire all free induction decay (FID) spectra (
(24) Referring specifically to the example shown in
(25) Referring now to results shown in
(26) Two different pillararene structures were also tested, but both suffered from poor water solubility. Consequently, organic co-solvents or non-ionic diazide bars (4 and 5) were employed. All pillararene-derived threaded complexes failed to produce a HyperCEST signal (
(27) However, according to the present invention, cyclodextrin-based pseudo-rotaxanes were found to reversibly encapsulate xenon and were detected by .sup.129Xe magnetic resonance spectroscopy (
(28) The data shown in
(29) .sup.1H NMR also confirms the formation of the ternary pseudo-rotaxane-xenon complex [(Xe⋅1)⊂γ-CD,
(30) Both isothermal calorietry (ITC) and NMR titration studies were performed to quantify the affinity of the molecular axles for their macrocyclic hosts. The association constant, k.sub.a, for the most promising psuedo-rotaxane, 1⊂γ-CD, was determined by ITC to be 1.0×10.sup.4 in pure water and 1.0×10.sup.2 in fetal bovine serum. NMR titrations corroborated these data by measuring a k.sub.a of 8.8×10.sup.2 M.sup.−1 for the 1:1 host:guest complex of 1⊂γ-CD..sup.39 Despite this modest affinity, the formation of both the binary (1⊂γ-CD) and ternary [(Xe⋅1)⊂γ-CD] complexes is favorable and detectable by .sup.1H and .sup.129Xe NMR..sup.14
Example 2
(31) To demonstrate and test the utility of this new class of xenon-binding agents for the synthesis of targeted biosensors, we synthesized a potential molecular probe using thioflavin T (ThT) as part of the affinity tag. ThT is a fluorescent dye that has an affinity for binding to the β-amyloid plaques that have been implicated with the onset and progression of neurodegenerative diseases such as Alzheimer's disease (AD)..sup.40 Using HP Xe biosensors such as this, the present invention provides clinical applications for studying the progression of AD and/or the efficacy of treatments for this and other diseases.
(32) Referring now to
(33) Referring now to
(34) According to the second scheme, rotaxanes 8 and 15 were directly functionalized with the affinity tag/ligand using Diels-Alder reactions. The Diels-Alder reaction between anthracenes and maleimides has been categorized as a click reaction because it proceeds quickly and reliably (Gacal, B. et al., Macromolecules 2006, 39 (16), 5330-5336). As before, the formation of 13, 15 and derivatives thereof are assessed by .sup.1H and .sup.129Xe NMR experiments.
Example 3
(35) In order to synthesize a more stable HP-Xe probe, rotaxanes are developed to contain large end groups on the alkyl chains that will prevent the dissociation of the macrocyclic hosts and their linear guests. Two strategies for synthesizing this kind of compound (
(36) We have found that the simple S.sub.N2 displacement of alkyl bromides by imidazole nucleophiles in refluxing toluene is a reliable method for constructing the alkyl chains that form the threads/axles of rotaxane complexes. Consequently, a rotaxane was designed to contain anthracene stoppers/end groups that would prevent de-threading and imidazoles that would allow for facile construction of the thread. Klotz, E. J. F., et al., J. Am. Chem. Soc. 2006, 128 (48), 15374-15375. When the reaction shown in
(37) Referring now to
(38) Once the second-generation rotaxanes have been synthesized, their ability to bind xenon in solution is quantified by NMR titrations. Increasing amounts of xenon are condensed and added to degassed samples of the rotaxanes in J-Young tubes. Haouaj, El, M. et al., J. Chem. Soc., Perkin Trans. 2 2001, 804-807. As shown in
Example 4
(39) After we have found the offset frequencies corresponding to the guest-host complexes shown in
(40) Furthermore, x-ray quality crystals of the rotaxanes and pseudo-rotaxanes that provide HyperCEST spectra are grown both in the presence and absence of xenon, and are sent to crystallography laboratories for analysis. See Taratula, O. et al., Nat Commun 2010, 1, 148. These crystal structures are then used to calculate the volume of the hosts' xenon-binding hydrophobic cavities, and the size of their apertures using software such as Swiss PDB Viewer. Alternatively, DFT calculations are performed using commercial software packages (e.g. Spartan™) to predict the structures of the pseudo-rotaxane and rotaxane complexes and their ternary complexes with xenon. The diameters of the apertures that allow for xenon ingress and egress from the rotaxane hosts as well as the volumes of the hydrophobic cavities within the rotaxanes are compared to comparable data based on crystal structures of CB6 and cryptophane-A to correlate the host structure with HyperCEST kinetic and thermodynamic data. These experiments give a better understanding of the dynamic host-guest interaction that allows for HyperCEST imaging.
(41) Technical Details
(42) Nuclear Magnetic Resonance (NMR) HyperCEST Detection. Natural abundant .sup.129Xe gas was polarized to 26-30% using a Xemed polarizer (Xemed, Durham, N.H., USA). 1.0 mL of sample was drawn into the glass frit cell using a syringe. The cell was then inserted into a custom RF coil tuned to the Larmor frequency of .sup.129Xe (35.33 MHz) at 3T, where HP .sup.129Xe gas was introduced to the vessel from the Tedlar bag in the pressure chamber which was pressurized at 35 kPa above atmosphere. The solution was mixed with HP .sup.129Xe gas as it passed through the fine fitted disc and produced several microbubbles, which continuously dissolved into solution and exited the vessel through the outflow tube. The concentration of .sup.129Xe at any point during the experiment was between 1-10 mM. A Philips Achieva 3T clinical scanner was used to collect all NMR spectra. The RF pulse length was determined with the use of the Ref B.sub.1, a parameter of Philips MR scanners. The pulse length and flip angle were used to calculate the amplitude of the RF pulse and field strength. In this study, the B1 field strength was determined by the scanner to be 15.9 μT. In the acquisition of NMR spectra, a pulsed saturation pre-pulse train consisting of 96-20 ms 3-lobe sinc pulses with 0 ms pulse intervals was applied at various chemical shift offsets. Free induction decay (FID) spectra were acquired at various chemical shift frequency offsets, approximately 5 ppm apart. Each FID spectra was acquired approximately 6 seconds apart. Off-resonance FID spectra were obtained quarterly in this series and acquired with a saturation pre-pulse at +271 ppm off resonance from the gas phase peak. A HyperCEST depletion spectrum was collected for each sample (See Supplemental Information) by measuring HyperCEST depletion at various frequency offsets from the Xe gas phase peak. A minimum of three spectra were obtained at each of the various chemical shifts and a plot of the mean signal depletion as a function of the frequency of the chemical shift offset (z-spectrum) was produced. The mean signal-to-noise ratio (SNR) obtained from all control spectra for individual samples were used in the measurement of signal depletion. The SNR for each spectrum was calculated using MATLAB (MathWorks, Natick, Mass., USA). To measure signal depletion, the mean HyperCEST saturation spectrum SNR was subtracted from the mean control spectrum SNR. This difference was then divided by the mean control spectrum SNR to produce the signal depletion by the HyperCEST effect.
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(83) While the present invention has been particularly shown and described with reference to the structure and methods disclosed herein and as illustrated in the drawings, it is not confined to the details set forth and this invention is intended to cover any modifications and changes as may come within the scope and spirit of the following claims. All publications and patent literature described herein are incorporated by reference in entirety to the extent permitted by applicable laws and regulations.