System, devices and methods using an integrated sphere light collector
10670521 ยท 2020-06-02
Assignee
Inventors
Cpc classification
C12Q1/18
CHEMISTRY; METALLURGY
C12Q1/00
CHEMISTRY; METALLURGY
G01N2015/0222
PHYSICS
G01J3/0254
PHYSICS
G01N21/1717
PHYSICS
G01N21/474
PHYSICS
International classification
C12Q1/00
CHEMISTRY; METALLURGY
C12Q1/18
CHEMISTRY; METALLURGY
Abstract
A system for measuring a sample comprising: an integrating sphere light collector (12) for collecting light and containing the sample; a light source (24) for introducing light in the integrating sphere light collector (12), wherein the light source (24) is operable to output light with a known modulation, preferably by using a signal generator (26); a detector (22) for detecting scattered light in the integrating sphere light collector (12) and generating a signal indicative of the scattered light, and a lock-in amplifier (28) operable use the known light modulation and the signal generated by the detector (22) to provide an output for analysis.
Claims
1. A method for monitoring susceptibility of a liquid biological sample to a drug, the method comprising: introducing at least a part of the liquid biological sample into an integrating light collector in the presence of the drug, the integrating light collector comprising a first part, a second part separable from the first part, and a cavity having an internal surface configured to reflect light inside the cavity, thereby providing a drug dosed liquid sample in the integrating light collector, wherein the first part comprises a sample port, and wherein the introducing the at least part of the liquid biological sample into the integrating light collector comprises: containing at least part of the drug dosed liquid sample in a sample holder in the integrating light collector; and inserting the sample holder into the sample port such that the first part, the second part, and a portion of the sample holder form the cavity so that the liquid sample is at least partially contained in the cavity; illuminating the at least part of the drug dosed liquid sample contained in the sample holder in the integrating light collector, so that the light passes through and is scattered by the drug dosed liquid sample, wherein the integrating light collector reflects at least some light scattered by interaction with the drug dosed liquid sample; collecting the scattered light in the integrated light collector; detecting the scattered light that is collected in the integrating light collector; repeating the steps of illumination, collecting, and detecting; and analysing changes in the detected scattered light as a function of time to determine susceptibility of the liquid biological sample to the drug.
2. A method as claimed in claim 1, further comprising comparing light detected from the drug dosed liquid sample with light detected from an undosed reference sample.
3. A method as claimed in claim 1, wherein the liquid biological sample comprises a species or strain of bacteria/fungi.
4. A method as claimed in claim 1, wherein the analysing the detected scattered light involves establishing an amount or a concentration of drug that kills or inhibits growth of a given organism.
5. A method as claimed in claim 1, wherein at least one of the first part and the second part includes a port for a light source and a port for a light detector.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) Various aspects of the invention will now be described by way of example only, and with reference to the accompanying drawings, of which:
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DETAILED DESCRIPTION OF THE DRAWINGS
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(18) The integrating sphere 12 has a hollow spherical cavity, an entry port 18 and an exit port 20. The entry port 18 and exit port 20 define the end points of an optical path through the hollow spherical cavity. The entry and exit ports 18 and 20 respectively are positioned on opposing sides of the spherical cavity. An internal surface of the hollow spherical cavity is diffusive and so capable of reflecting and diffusing light. In some cases, a thin aluminium or silver coating is applied to an inner surface of the sphere and covered with a layer of titanium oxide II paint. These layers reflect back any laser radiation that was scattered by the sample and diffuse any light that was scattered by the sample and reaches the inner face of the sphere, respectively.
(19) The sample holder 14 and sample cuvette 16 are positioned so that in use the sample extends across substantially the entire diameter of the integrating sphere 12. This helps maximise the volume of the sample that can interact with reflected and diffused light circulating within the sphere.
(20) On the internal surface a photodetector 22 is provided, for example a photodiode. This is used to measure the intensity of light in the cavity as a function of time. A baffle is positioned over the photodiode to prevent its direct illumination and ensure that only scattered and reflected light is incident on it, thereby increasing the quality of the signal.
(21) Light enters the hollow spherical cavity of the integrating sphere 12 through the entry point 18. The hollow cavity acts as a light diffusion and collection chamber. Light inside the cavity is reflected multiple times off the internal surface of the hollow cavity to produce a uniform distribution of light throughout the interior of the cavity. Unscattered light exits the hollow cavity through the exit port 20 to a beam dump. Scattered light is measured by the photodetector 22. Because the sample is located inside the hollow spherical cavity, beams of light may pass through it multiple times. This results in highly sensitive measurements.
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(23) The signal generator 26 is arranged to modulate the output frequency of the laser source 24. As an example, the laser may be modulated at a frequency of 10 kHz with a phase of +169, and a peak-to-peak amplitude of 200 mV. The detected signal is filtered by the lock-in amplifier 28. The lock-in amplifier 28 filters the detected signal from the photodiode 22. The lock-in amplifier 28 synchronizes the detected signal with the modulation applied to the light source 24 to provide a dampening system that eliminates unwanted noise, for example, background electrical or luminous noise. The filtered signal is sent to the digital oscilloscope 30 to be recorded. The recorded signal can be displayed on the computer display 32.
(24) Raw data is collected by the digital oscilloscope. Typically around 16,000 data points are collected for every 30 second experiment. The data is exported to a calculation suite in a processor which returns the averages (mean, median, mode) and the standard deviation of the data points. If the standard deviation is above a threshold (indicating aberrations from the norm in the data) the data is discarded. The mean of each experiment is selected. The experiments have between 3 and 89 technical replicates, which are collected and tabulated. The standard error from the mean of these averages is calculated and charted as error bars along with the data. Once the data is graphed, a function, such as a standard Gompertz, is fitted to the data in order to estimate future outcomes of experiments such as inocula sizes.
(25) In use, a sample is placed inside the sample cuvette 16 and positioned in the sample holder 14, which holds the sample in the interior of the hollow cavity. Incoming light from the source 24 enters the cavity through the entry port 18. The sample is positioned such that the incoming light beam is incident on the sample. Incoming light may be scattered by the sample. The scattered light is then reflected, multiple times, by the internal surface of the cavity. The hollow cavity acts as an integrating sphere and integrates or adds up the reflected light inside the sphere. The sum of the diffused light is sampled by the photodiode 22. This is done as a function of time. Unscattered light travels straight through the cavity and is absorbed by a beam dump or a baffle.
(26) Due to the geometry and scattering properties of the internal surface of the hollow cavity of the integrating sphere 12 reflected light is incident on the sample from all directions. With a sample present inside the hollow cavity, the distribution of the light detected by the photodetector 22 will change dependent on the optical properties of the sample.
(27) Various different embodiments of the integrating sphere 12 with its internal sample arrangement will now be described.
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(29) The integrating sphere is formed by connecting the upper and lower hemispheres of
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(32) In all of the examples described with reference to
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(34) The device of the invention can be used to determine bacterial susceptibilities to drugs. This is done over time with a set concentration of drug. To do this, bacterial species are measured and diluted or concentrated to a clinically significant level. A quantity of drug that the bacteria are susceptible to is added at a concentration greater than the accepted MIC (minimum inhibitory concentration). The dosed culture is grown at accepted conditions in parallel with another culture that has been treated identically with the exclusion of the drug. The diluent used for the drug (PBS or water) is added at the same volume as the drug in the dosed culture. At predetermined time points, the cultures are removed from the incubator and measured in the integrated collector in 1 ml cuvettes. The first time point at which there is a statistically significant difference between the dosed and the free-growing cultures is declared the time to positivity (TTP). Tests have demonstrated that the system of the invention has a TTP faster than any other drug susceptibility apparatus on the market.
(35) Various drug susceptibility experiments have been conducted. For these, the collector of
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(37) TABLE-US-00001 TABLE 2 Chi squared and T-test results for all time points in FIG. 7. minutes 0 15 30 45 60 Chi .sup.2 0.934147 0.180333 0.024681 6.5E05 9.33E10 T-test 0.207025 0.034152 0.004411 0.000271 0.002039
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(39) TABLE-US-00002 TABLE 3 Chi squared and T-test results for all time points in FIG. 8. minutes 0 15 30 45 60 Chi .sup.2 0.835984 0.239163 0.039273 0.005643 0.000106 T-Test 0.298238 0.03116 0.007687 0.010741 0.006206
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(41) TABLE-US-00003 TABLE 4 Chi squared and T-test results for all time points in FIG. 9. minutes 0 15 30 45 60 Chi .sup.2 0.893886 0.520936 0.017505 8.32E06 3.71E09 T-test 0.445398 0.019607 0.001156 0.020599 0.012607
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(43) The experiments described above may be extended for a clinical lab to allow many samples to be tested simultaneously. Cultures with suspected bacterial growth (blood samples from sepsis for example) need simply be loaded into blood incubator tubes (as is done now in hospitals) and have suspected efficacious drugs added, one to each tube totalling, for example, 20 tubes plus one control with no drug. These would all then be grown as is current standard procedure with samples removed and analysed by SLIC every 15-30 minutes until it is clear which drugs are effective in retarding growth of the bacteria relative to the control.
(44) In the experiments described above, the sample is held within a constant volume sample container, i.e. a sample cuvette. It will be appreciated that the invention can be used in a constant flow system. For example, a flow cuvette may be placed in the spherical collector with feeding and draining tubes attached. A bacterial culture may be passed through the cuvette by gravity pumping from a heated reservoir and measurements taken constantly.
(45) For a flow based system, the flow rate has to be controlled to ensure that sufficient samples can be taken. The flow rate can be determined using:
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(47) Using the oscilloscope and processor described above, with the measurement frequency of 200 Hz, a flow pipeline diameter of 10 mm and a beam volume of 30 mm.sup.3, a flow system would require the flow rate to be limited to 470 ml/s (roughly half a litre per second). A faster processor would speed up this system considerably.
(48) Real-time growth curves can be collected using the device of the invention. In this case, the device would be placed in an incubator with a static or flowing culture vessel within it. Data would be collected over time, so that a sample could be measured for turbidity at any time point required. Indeed, the measurements could be taken multiple times per minute or continuously.
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(52) Fluorescence measurements have been taken. The wavelengths used were blue43030 nm and green52515 nm. The LEDs were driven directly from the signal generator (no other power input required) and oscillated at 10 kHz and 200 mV amplitude, peak to peak. Fluorescence signal interference was detected via custom photodiode shields and photodiodes that have peak sensitivity at the expected emission range(s). Differentiation of fluorescence measurements versus background versus environmental illumination are dealt with by a combination of the custom coloured shields and the fact that the LEDs and photodiodes are housed on the inner face of the integrating sphere. In this example, the shield used on one photodiode was green (52515 nm) and on the other photodiode the shield used was red (63018 nm). These shields were selected to allow detection of the fluorescence output of the stain nile red when it is exposed to a lipid rich environment.
(53) Whilst the integrating spheres of
(54) The present invention has numerous applications. For example, the invention can be used to establish early growth of pathogens in human/animal/food samples or on medical devices such as drips. It can also be used to detect minute changes in cellular concentrations in chemotherapy studies for microbiology/oncology/mycology or to detect impurities in water or other fluids.
(55) As another example, the invention can be used for simple cell counting. Enumerating the number of cells in a sample is a common microbiological task and the invention makes it simple, rapid and easy and with the possibility of an operator being able to build a database of their own cells in a particular medium to allow for the rapid detection of small changes in a sample, such as a burgeoning contamination or a small colour change in the medium. Using the invention the number of bacteria in a sample can be determined with precision down to a lower limit of 10 microbes per mL.
(56) The invention is sensitive enough to be able to differentiate between cultures with very similar cell numbers. In particular, the invention allows for rapid drug susceptibility testing of species or strains of bacteria/fungi to establish the level of drug which will kill or inhibit growth of a given organism. For example, small shifts in cell number early in drug susceptibility studies can be detected where one culture has been dosed with a bacteriostatic concentration of an antibiotic and another is allowed to replicate naturally (as demonstrated above with reference to
(57) The invention could also be useful in determining the cell state of a bacterial culture. This is because some microbes change their morphologies under different circumstances, and different sizes and shapes of bacteria will scatter light differently. Equally, MIC (minimum inhibitory concentrationthe smallest amount of a given drug that will inhibit the growth of a given bacterial species of strain)/MBC (minimum bactericidal concentrationthe smallest amount of a given drug that will kill all present cells of a given bacterial species of strain in a sample) breakpoint analysis can be done to establish the point at which a microbial strain is or is not responding to a particular antibiotic or combination of antibiotics.
(58) In yet another application, the growth of microbes in a non-opaque media can be tracked. This can be done in a range from the lower detection limit (<10 microbes per mL) to 10.sup.9 microbes per mL as a function of time. This can be automatic at distinct time intervals or manual at the operator's discretion, or a combination of the two.
(59) Using post-acquisition data analysis the growth rate of microbial samples can be determined, i.e. the time it takes for bacteria to divide. Also in certain assays (e.g. drug susceptibility) the number of bacteria can be estimated. This is done using an automated analysis and so can provide systematic computation without user input into the analysis.
(60) As an example,
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estimate of time per division=1.37578/Mu*1.1912
(62) Hence, by measuring Mu, an estimate of the time per division can be estimated.
(63) Using the above equation, it can be shown that:
Number of division till positivity=TTP/Estimate of time per division.
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(65) Using the invention, any variation from the norm in a fluid can be detected, including a colour change due to either suspended colloidal particles or chemical reaction. A change away from transparency towards the red end of the spectrum will cause absorption of more red light, so changing the detection parameters. The same holds true towards the blue end of the spectrum but the detection parameters will be altered differently allowing differentiation and detection. Adding different coloured lasers boosts this capacity.
(66) A skilled person will appreciate that variations of the disclosed arrangements are possible without departing from the invention. For example, although the main area of application described above relates to medical analytics, other applications are possible. For example, because the device can detect any particle in a non-opaque liquid, it could be used to find any particle in a liquid medium, such as dust, sand or grit in fluids such as high-quality bottled water. It could also be used to test fruit juices being imported, as they need to prove they are not carrying non-endemic bacteria or fungal spores. To do this, a threshold of scattering intensity can be used as a blank and any variation from this can be registered and recorded as a difference which has process significance. Accordingly, the above description of a specific embodiment is made by way of example only and not for the purposes of limitations. It will be clear to the skilled person that minor modifications may be made without significant changes to the operation described.