Methods for detecting an amount of complement factor B protein and carbohydrate antigen 19-9 protein, and methods for diagnosing and treating pancreatic cancer using the same
10656154 · 2020-05-19
Assignee
Inventors
Cpc classification
G01N27/26
PHYSICS
A61P1/18
HUMAN NECESSITIES
G01N23/00
PHYSICS
G01N2400/00
PHYSICS
International classification
G01N27/26
PHYSICS
G01N23/00
PHYSICS
Abstract
The present application relates to a kit for diagnosing pancreatic cancer, a method for providing information for diagnosing pancreatic cancer using the kit, and a method for diagnosing pancreatic cancer using same, wherein the kit includes an antibody specifically binding to complement factor B protein and an antibody specifically binding to carbohydrate antigen 19-9 protein. According to the present application, it is possible to provide a marker for diagnosing pancreatic cancer having enhanced sensitivity and specificity.
Claims
1. A method for diagnosing and treating pancreatic cancer in a subject, the method comprising the steps of: (a) collecting a blood sample from the subject; (b) detecting an amount of human complement factor B (CFB) protein and an amount of human carbohydrate antigen 19-9 (CA 19-9) in the blood sample of the subject respectively; (c) comparing the amount of CFB protein and the amount of CA19-9 detected in said step (b) to a reference amount of CFB protein and a reference amount of CA 19-9, respectively; (d) diagnosing the subject with pancreatic cancer and determining an absence of at least one disease or condition selected from the group consisting of pancreatitis, liver cancer, bile duct cancer, and stomach cancer when both the amount of CFB protein and the amount of CA 19-9 in the blood sample detected in said step (c) are greater than the respective reference amounts; and (e) treating the diagnosed subject by at least one of (i) administering an effective amount of a therapeutic agent for pancreatic cancer to the diagnosed subject, (ii) conducting a curative surgery, and (iii) conducting a radiation therapy, wherein the reference amounts are an amount of CFB protein and an amount of CA 19-9 in a blood sample from a subject not having pancreatic cancer, and wherein the CFB protein consists of the amino acid sequence of SEQ ID NO: 1.
2. The method according to claim 1, wherein the pancreatic cancer is phase I pancreatic cancer or phase II pancreatic cancer.
3. The method according to claim 1, wherein the blood sample is whole blood, blood plasma or serum sample.
4. The method of claim 1, wherein the subject is diagnosed with pancreatic cancer when the amount of CFB protein in the blood sample is more than 78.4 ng/ml.
5. A method of diagnosing and treating pancreatic cancer in a subject, the method comprising: obtaining a blood sample from the subject; detecting an amount of human complement factor B (CFB) protein and an amount of human carbohydrate antigen 19-9 (CA 19-9) in the blood sample of the subject respectively; diagnosing the subject with pancreatic cancer and determining an absence of at least one disease or condition selected from the group consisting of pancreatitis, liver cancer, bile duct cancer, and stomach cancer when both the amount of CFB protein and the amount of CA 19-9 in the blood sample are greater than an amount of CFB protein and an amount of CA 19-9 in a blood sample of a subject not having pancreatic cancer; and treating the diagnosed subject by at least one of (i) administering an effective amount of a therapeutic agent for pancreatic cancer to the diagnosed subject, (ii) conducting a curative surgery, and (iii) conducting a radiation therapy, wherein the CFB protein consists of the amino acid sequence of SEQ ID NO: 1.
6. The method of claim 5, wherein the subject is diagnosed with pancreatic cancer: when the amount of CFB protein in the blood sample is greater more than 2 fold than the amount of CFB protein in the blood sample of the subject not having pancreatic cancer; and when the amount of CA 19-9 in the blood sample is more than 37 U/ml.
7. The method of claim 5, wherein the subject is diagnosed with pancreatic cancer when the amount of CFB protein in the blood sample is more than 78.4 ng/ml.
8. The method of claim 5, wherein the pancreatic cancer is phase I pancreatic cancer or phase II pancreatic cancer.
9. The method of claim 5, wherein the blood sample is whole blood, serum or plasma sample.
10. The method of claim 1, wherein the amount of CFB protein and the amount of CA19-9 in the blood sample is detected using a two-dimensional fluorescence electrophoresis, Western blotting, ELISA, radioimmunoassay, radioimmunodiffusion, immune electrophoresis or mass spectrometry.
11. The method of claim 5, wherein the amount of CFB protein and the amount of CA19-9 in the blood sample is detected using a two-dimensional fluorescence electrophoresis, Western blotting, ELISA, radioimmunoassay, radioimmunodiffusion, immune electrophoresis or mass spectrometry.
Description
BRIEF DESCRIPTION OF THE SEVERAL VIEWS OF THE DRAWINGS
(1)
(2)
(3)
(4)
(5)
(6)
(7)
(8)
(9)
(10)
(11)
(12)
(13)
(14)
(15)
(16)
DESCRIPTION OF SPECIFIC EMBODIMENTS OF THE INVENTION
(17) Hereinafter, the present application is explained in detail through examples. The following examples are intended merely to illustrate the present application, to which the scope of the present application is not restricted.
[Example 1] Analysis of Protein Expression Levels of Complement Factor B (CFB)
Example 1-1. Detection of CFB Protein in Plasma by Gel Electrophoresis and Mass Spectrometry
(18) To detect the presence and amount of CFB in plasma of normal person and pancreatic cancer patients, electrophoresis and mass spectrometry were performed.
(19) Plasmas were obtained from Gene Bank and Department of Gastroenterology in Severance Hospital according to regulations of the Institutional Review Board (IRB). Plasma samples were used by dispensing them by 200 l and keeping them before the experiment at 70 C. Because complement factor B is a secreted protein and the known high abundance proteins are present in plasmas, proteins besides complement factor B were removed with Hu-14 (Agilent), and then two-dimensional electrophoresis was performed. For two-dimensional electrophoresis, 50 g of each analytical sample and the reference sample corresponding thereto were labeled with 400 pmol of Cy3, Cy5, Cy2 (GE Healthcare) as a fluorescent dye under a dark condition for 30 minutes, and the reaction was stopped with 1 L of 10 mM lysine. To be 450 L finally by mixing three samples, each labeled with the fluorescent dye, with each other, the sample butter solution [6 M urea, 2 M thiourea, 4% Chaps, 60 mM dithiothreitol (DTT), 30 mM Tris, pH 8.5] was added, and rehydrated together with 2% IPG 4-7NL buffer solution at room temperature for 16 hours. Isoelectric focusing (IEF) was performed using Immobiline DryStrip pH 4-7NL (GE Healthcare) in MultiPhor II electrophoresis system (GE Healthcare) up to 95,000 V as the optimal requirement, and one-step reduction and alkylation were carried out with a tributylphosphine buffer solution [6 M urea, 2% sodium dodecyl sulfate (SDS), 30 mM Tris, 20% glycerol, 2.5% acrylamide solution, 5 mM tributylphosphine] for 25 minutes.
(20) The two-dimensional electrophoresis results for plasmas of normal person were depicted in
(21) Furthermore, in the plasmas of normal person and pancreatic cancer patients, the secondary vertical electrophoresis was performed to investigate the difference in expression of CFB. It was separated by using Ettan Dalttwelve electrophoresis system (GE Healthcare) for the secondary vertical electrophoresis and using 9%16% polyacrylamide gel, and scanned by means of Typhoon 9400 (GE Healthcare) scanner with wavelengths corresponding to Cy2, Cy3, Cy5, after completing the electrophoresis. Each gel image was analyzed using DeCyder2-D analysis software (GE Healthcare).
(22) As a result, just like the two-dimensional electrophoresis results, it could be seen in pancreatic cancer patients that the expression of CFB increases (
(23) After analyzing images, the mass spectrometry was performed on the spots indicated by the arrows in
(24) As a result, it could be confirmed, as shown in Table 1 below, that the spots indicated by the arrows in
(25) TABLE-US-00002 TABLE 1 Protein pI Queries Matched Sequence Number Name Value Score Ratio Coverage gi291922 Complement 6.55 171 25 1.5 11% Factor B
Example 1-2. Analysis of CFB Protein Expression Levels in Plasmas
(26) To analyze the CFB protein expression levels in plasmas of patients with pancreatic cancer, the immunoblot was performed. The Western blot was performed by using antibodies from the same protein amounts in plasmas of 10 normal person and plasmas of 10 patients with pancreatic cancer. After 10% SDS-PAGE analysis about 10 g of the plasma protein, the gel was transferred into nitrocellulose (NC) membrane for the Western blot and then was blocked with TBS-T buffer solution containing 5% skimmed milk[20 mM Tris, 137 mM sodium chloride, 0.1% Tween-20, pH 7.6] for 1 hour. Anti-complement factor B antibody (CFB, Abcam) was primarily treated by diluting it in the TBS-T buffer solution containing 5% skimmed milk by 1:1000 times, and anti-mouse IgG-HRP (Santa Cruz) was secondarily treated by 1:10000 times. The final NC membrane was reacted with ECL Plus Western blot reagent (GE Healthcare) for 1 minute, and analyzed by scanning a Typhoon 9400 scanner.
(27) As a result, as depicted in
(28) By analyzing the result of
Example 1-3. Analysis of CFB Expression Levels in Pancreatic Cancer Cells
(29) Western blotting and RT-PCR were performed to determine the CFB expression levels in the pancreatic cancer cell lines. HPDE (human pancreatic duct epithelial cell) was used as the normal cell lines, and HPAC1, BXPC3 (human pancreas adenocarcinoma epithelial cell), and PANC1 (human pancreas epithelioid carcinoma) were used as the pancreatic cell lines. 2 g of anti-complement factor B antibody and 10 l of protein G agarose were immune precipitated together in 1 ml tube for 2 hours, using 1 mg of each cell lysate, and then the CFB expression levels in the normal cells and the pancreatic cancer cells were determined via the Western blot. As a result, it was confirmed that CFB is not detected in the normal cells, but is detected only in pancreatic cancer cells (
(30) Next, the mRNA expression level of CFB was determined by using RT-PCR. The total RNA was extracted using the easy-BLUE (iNtRON, Gyeonggi, Korea), and cDNA was synthesized using the omniscript RT kit (Qiagen, Hilden, Germany). The primers used were as follows:
(31) TABLE-US-00003 CFBprimer(SEQIDNO.2): 5-CAACAGAAGCGGAAGATCGTC-3 (forward) CFBprimer(SEQIDNO.3): 5-TATCTCCAGGTCCCGCTTCTC-3 (reverse) GAPDHprimer(SEQIDNO.4): 5-ACCACAGTCCATGCCATCAC-3 (forward) GAPDHprimer(SEQIDNO.5): 5-TCCACCACCCTGTTGCTGTA-3 (reverse)
(32) PCR conditions were 35 cycles, denaturation at 94 C. for 1 minute, annealing at 59 C. for 1 minute, and primer extension at 72 C. for 1 minute. As a result, it was confirmed as in the Western blot data that CFB is not detected in the normal cells, but is detected only in the pancreatic cancer cells (
[Example 2] Analysis of the Protein Expression Level of Complement Factor B (CFB) with a Plurality of Samples
(33) To ascertain a definite possibility as a biomarker candidate about CFB, the further independent confirmation experiment was performed using large patient cohorts.
(34) The Western blot was performed in the same manner as Examples 1 to 3, using plasmas of 44 normal persons (HD), 12 pancreatitis patients (CP), and 40 pancreatic cancer patients (PC) and then using the pooled plasmas of the normal person as a standard.
(35) As a result, it could be confirmed that CFB is highly expressed in PC over HD and CP (
[Example 3] Analysis of Protein Expression Levels of CFB and CA 19-9 in Various Cancer Patients by ELISA
(36) To compare the expression levels of CA 19-9 and CFB, now known as pancreatic cancer biomarkers, ELISA tests were performed using plasmas of normal persons (HD), pancreatitis patients (CP), pancreatic cancer patients (PC), liver cancer patients (HCC), bile duct cancer patients (CC), and stomach cancer patients (GC). Products from USCN and Panomics were used as ELISA KITs of CFB and CA 19-9, respectively, and the experiments were carried out in accordance with each protocol for each product.
(37) First, in the case of CFB ELISA, each plasma was diluted in 1:10,000, and then introduced by 100 l into the wells overlaid with antibody to CFB. They were incubated for 2 hours at room temperature. Then, after removing plasmas from the wells and introducing 100 l of a detection reagent a working solution therein, they were incubated for 1 hour at room temperature. After 1 hour, the solution was removed from the wells, and then they were washed three times repeatedly by adding 350 l of the washing solution thereto. Then 100 l of the detection reagent B working solution was introduced into each well and reacted at room temperature for 30 minutes. They were washed five times with the wash solution. Then 90 l of the substrate solution was introduced into each well, and then reacted in the dark condition for 15 minutes, followed by quantification at 450 nm using a microplate reader after introducing 50 l of the stop solution thereto. The expression levels of CFB in these groups appeared to be 34.0 (range: 26.1 to 41.3), 73.5 (range: 62.3 to 77.1), 92.0 (range: 75.2 to 121.6), 37.0 (range: 28.8 to 47.5), 41.5 (range: 29.1-52.1), 63.0 (range: 56.3 to 72.9) ng/ml (
(38) In the case of CA 19-9 ELISA, each of plasma was introduced by 10 l into the plate overlaid with CFB19-9 antibody, and 100 l of CA 19-9 assay buffer was introduced thereon. Then they were well mixed for 30 seconds, and then incubated at room temperature for 90 minutes. Then, the buffer was removed from the wells, which were washed four times repeatedly using the wash buffer. Then, 100 l of the working conjugate reagent was carefully introduced into each well, and then incubated at room temperature for 90 minutes after well mixing them for 30 seconds. The reagent was removed from the wells, which were washed four times repeatedly using the wash buffer. Then, TMB was introduced into each well and reacted for 20 minutes in the dark conditions after mixing them for 10 seconds. Then, 100 l of the stop solution was introduced thereto, and mixed for 30 seconds, followed by quantification at 450 nm using the microplate reader. The CA 19-9 levels in these groups each appeared to be 4.6 (range: 2.8 to 7.2), 10.2 (range: 6.0 to 21.4), 298.8 (range: 111.4 to 832.6), 50.5 (range: 18.1 to 159.5), 137.5 (range: 53.8 to 537.9), and 10.0 (range: 9.4 to 16.7) U/ml (
(39) This means that CA 19-9 alone is not suitable for use as a diagnostic marker for pancreatic cancer, whereas CFB specifically increasing the expression in pancreatic cancer only is suitable as a marker for diagnosing pancreatic cancer.
[Example 4] Analysis of Sensitivity and Specificity of CFB and CA 19-9 with ROC (Receiver Operating Characteristic) Curve, in Diagnosis of Pancreatic Cancer
(40) To determine how well CFB and CA 19-9 distinguish between the pancreatic cancer patients and person without pancreatic cancer (HD, CP, HCC, CC, and GC), the ROC curve analysis was performed using the Mann-Whitney rank sum test program. CFB was compared with CA 19-9 through the AUC value. As a result, the AUC value of CFB of 0.958 (95% CI: 0.956-0.959) appeared to be higher than the AUC value of CA 19-9 of 0.833 (95% CI: 0.829-0.837). The AUC value of 0.986 (0.985-0.986) on combining the two (CFB+CA 19-9) showed a significantly higher AUC value than those (p<0.01) on using CFB and CA 19-9 alone (
(41) This means that it is possible to diagnose pancreatic cancer by CFB alone or a combination of CFB and CA 19-9.
[Example 5] Diagnosis of Pancreatic Cancer Based on Optical Cut-Off Values of CFB and CA 19-9
(42) For each group (HD; normal, CP; pancreatitis, PC; pancreatic cancer, HCC; liver cancer, CC; bile duct cancer, GC; stomach cancer), the diagnostic efficiencies of CA 19-9 and CFB were confirmed. As a result, as shown in Table 2 below, both CA 19-9 and CFB showed the similar diagnostic efficiency in the PC (CA 19-9: 80.5%, CFB: 73.2%). However, CA 19-9 showed high diagnostic efficiency (HCC: 61.3%, CC: 77.2%, GC: 17.1%) for other cancers cancer (HCC, CC, GC), whereas CFB showed low diagnostic efficiency for other cancers (HCC: 0%, CC: 0%, GC: 8.6%). This means that CFB is more specific to PC than CA 19-9 as compared to other cancers.
(43) TABLE-US-00004 TABLE 2 CA 19-9 37 U/ml CFB 78.4 ng/ml HD 0% 0% CP 8.3% 8.3%.sup. PC 80.5% 73.2% HCC 61.3% 0% CC 77.2% 0% GC 17.1% 8.6%.sup.
[Example 6] Identification of Sensitivity and Specificity of CFB and CA 19-9
(44) In order to assess the accuracy as a diagnostic indicator of pancreatic cancer of CFB, CA 19-9 and CFB+CA 19-9, sensitivity and specificity (%) of CA 19-9, CFB and CFB+CA 19-9 in pancreatic cancer diagnosis compared with other diseases were identified according to the optical cut-off values predicted by the maximum Youden index. As a result, as shown in Table 3 below, when PC was compared with other groups (HD, CP, HCC, CC, and GC), the sensitivity of CA 19-9 appeared to be 80.4%, with being the specificity of 70.0%, and the sensitivity of CFB appeared to be 73.1%, with being the specificity of 97.9%. And when CFB and CA 19-9 were combined, the sensitivity appeared to be 90.1%, with being the specificity of 97.2%. This means that the better diagnostic efficiency on combining CA 19-9 and CFB appears over the cases of using CA 19-9 and CFB alone.
(45) TABLE-US-00005 TABLE 3 CA 19-9 (U/ml) CFB (ng/ml) CA 19-9 + CFB PC vs. other 37 78.42 cancers Y-index 50.4 71.0 87.4 Sensitivity 80.4 (79.8-81.0) 73.1 (72.4-73.7) 90.1 (89.7-90.6) (%; 95% CI) Specificity 70.0 (69.6-70.4) 97.9 (97.8-98.1) 97.2 (97.0-97.3) (%; 95% CI)
[Example 7] Analysis of Protein Expression Level of CFB and CA 19-9 in Pancreatic Cancer Progression Stage (Phase) Patients
(46) To compare the difference of expression levels of the CA 19-9 and the CFB in pancreatic cancer patients according to phase of pancreatic cancer progress, the expression levels of the CA 19-9 and the CFB were confirmed through ELISA using plasmas of 44 normal persons (HD), 12 chronic pancreatitis patents (CP), 50 pancreatic cancer (Stage I-II) patients, 39 pancreatic cancer (Stage III-IV) patients. The used CFB and CA 19-9 ELISA KITs were products from Abnova and Panomics, respectively, and the experiments were performed according to the protocol of each product.
(47) First, in the case of the CFB ELISA, the plasmas were each diluted to 1:4,000, and then the diluted plasmas were each added by 50 l to wells covered with an antibody to the CFB were laid. They were incubated at room temperature for 2 hours, and washed five times repeatedly by adding 200 l of the washing solution thereto. The biotinylated antibody was added by 50 l to each well and then incubated at room temperature for 1 hour. Then, they were washed five times repeatedly by adding 200 l of the washing solution thereto. Each streptavidin-peroxidase was added by 50 l to each well and then incubated at room temperature for 30 minutes. Then, they were washed five times repeatedly by adding 200 l of the washing solution thereto. 50 l of the substrate solution was added to each well and then reacted in a dark condition for 20 minutes, and after that, 50 l of the stop solution was added and then quantified at 450 nm using a micro-plate reader.
(48) In the case of the CA 19-9 ELISA, the plasmas were each added by 10 l to well plates covered with the CA 19-9 antibody, on which 100 l of the CA 19-9 assay buffer was put. Then, they were well mixed for 30 seconds and then incubated at room temperature for 90 minutes. Then, the buffer was removed from the wells, which were washed four times repeatedly using the wash buffer. Then, 100 l of the working conjugate reagent was added to each well, well mixed for 30 seconds and then incubated at room temperature for 90 minutes. The reagent was removed from the wells, which were washed four times repeatedly using the wash buffer. Then, the TMB was added to each well, mixed for 10 seconds and reacted for 20 min in a dark condition. Then, 100 l of the stop solution was added thereto, mixed for 30 seconds and quantified at 450 nm using a micro-plate reader.
(49) As shown in
(50) In addition, on the basis of the above results, it was confirmed whether the CFB, the CA 19-9, and a combination of the CFB and the CA 19-9 could diagnose pancreatic cancer in the early stage of pancreatic cancer. As shown in