CHD risk stratification evaluations for subjects with high levels of large HDL-P
11703501 · 2023-07-18
Assignee
Inventors
Cpc classification
G16Z99/00
PHYSICS
G01N2800/325
PHYSICS
G16H50/70
PHYSICS
G16H20/10
PHYSICS
International classification
G01N33/50
PHYSICS
G01N33/92
PHYSICS
G16H20/10
PHYSICS
G16H50/70
PHYSICS
Abstract
Embodiments of the invention are directed to methods, systems and computer programs that provide improved risk stratification for people having elevated large HDL-P using at least one defined HDL risk interaction parameter.
Claims
1. A method of determining whether a subject with elevated concentrations of very large high density lipoprotein (HDL) particles (HDL-P) is at increased risk for a cardiac event and/or CHD, comprising: obtaining NMR signal data of a blood, plasma or serum sample from a subject; determining NMR derived concentrations of HP.sub.VS, HP.sub.ML, and HP.sub.VL in the blood, plasma or serum sample, wherein HP.sub.VS is a concentration of very small HDL-P subclasses, HP.sub.ML is a concentration of medium and large HDL-P subclasses, and HP.sub.VL is a concentration of very large HDL-P subclasses; identifying that the concentration of HP.sub.VL in the blood, plasma or serum sample is elevated when the HP.sub.VL concentration of the sample is greater than the HP.sub.VL concentration of a selected range of a population norm; calculating an HDL interaction risk parameter using the concentration measurements of at least two of HP.sub.VS, HP.sub.ML, and HP.sub.VL; and determining the risk for a cardiac event and/or CHD based on the calculated HDL interaction risk parameter.
2. The method of claim 1, wherein the HDL interaction risk parameter comprises P1, R1, or combinations thereof, wherein P1 is a product of HP.sub.VS and HP.sub.ML, and wherein R1 is a ratio of HP.sub.VL to HP.sub.ML.
3. The method of claim 2, wherein the HDL interaction risk parameter comprises P1/HP.sub.VL, P1/R1, HP.sub.ML/R1, or combinations thereof.
4. The method of claim 2, further comprising generating a report based on the HDL interaction risk parameter comprising R1, P1, P1/R1, P1+R1, or combinations thereof.
5. The method of claim 1, wherein the HDL interaction risk parameter is calculated only when the sample has the elevated concentration of HP.sub.VL.
6. The method of claim 5, further comprising: screening subjects that may benefit from an HDL risk stratification test by identifying if the subject has a high density lipoprotein-cholesterol (HDL-C) concentration that is ≥60 mg/dL, ≥80 mg/dL, or ≥100 mg/dL, wherein the selected range for the concentration of HP.sub.VL is ≥80% of a population norm.
7. The method of claim 1, wherein determining NMR derived concentrations of HP.sub.VS, HP.sub.ML, and HP.sub.VL comprises deconvolving an NMR composite signal into 26 subpopulations (H1-H26) of different sizes of HDL-P ranging from a smallest HDL-P size associated with H1 to a largest HDL-P size associated with H26, then: electronically calculating concentrations of H1 and H2 to generate the concentration of HP.sub.VS; electronically calculating concentrations of H9-H20 to generate the concentration of HP.sub.ML; and electronically calculating concentrations of H21 and H26 to generate the concentration of HP.sub.VL.
8. The method of claim 1, further comprising generating a report that visually and/or textually indicates whether the subject is at increased risk of CHD despite having elevated HP.sub.VL.
9. The method of claim 1, further comprising electronically monitoring whether there is a change in the HDL risk interaction parameter in samples from the subject over time to assess a change in CHD risk when HP.sub.VL remains above 1.84 μmol/L.
10. The method of claim 1, further comprising referring the subject for further medical evaluation if the subject was determined to be at risk for a cardiac event and/or CHD based on the calculated HDL interaction risk parameter.
11. The method of claim 1, wherein the subject is human, and wherein the obtaining and calculating steps are carried out using at least one processor, the method further comprising providing a report indicating whether the subject is at risk of having and/or developing CHD based, in part, on the calculation.
12. A computer program product for stratifying CHD risk for a subject with elevated concentrations of very large high density lipoprotein (HDL) particles (HDL-P), the computer program product comprising: a non-transitory computer readable storage medium having computer readable program code embodied in the medium, the computer readable program code comprising: computer readable program code that obtains NMR signal data of an in vitro blood, plasma or serum sample of the subject to determine NMR-derived concentration measurements of HDL-P subclasses in the blood, plasma or serum sample; computer readable program code that identifies that a concentration of HP.sub.VL in the blood, plasma or serum sample is elevated when the HP.sub.VL concentration of the sample is ≥80% of the HP.sub.VL concentration of a population norm; and computer readable program code that calculates an HDL interaction risk parameter associated with HDL content of the blood plasma or serum sample of the subject, the HDL interaction risk parameter comprising at least two of HP.sub.VS, HP.sub.ML, or HP.sub.VL, wherein HP.sub.VS is a concentration of very small HDL-P subclasses, HP.sub.ML is a concentration of medium and large HDL-P subclasses, and HP.sub.VL is a concentration of very large HDL-P subclasses.
13. The computer program product of claim 12, wherein the subject is human, the computer program product further comprising computer readable program code that provides a report indicating whether the subject is at risk of having and/or developing CHD based, in part, on the HDL interaction risk parameter.
14. A system for analyzing CHD risk, comprising: a circuit comprising at least one processor configured to determine whether a subject with elevated concentrations of very large high density lipoprotein (HDL) particles (HDL-P) is at increased risk for a cardiac event and/or CHD, the at least one processor configured to: obtain NMR signal data of an in vitro blood, plasma or serum sample of the subject; determine NMR-derived concentration measurements for HP.sub.VS, HP.sub.ML, and HP.sub.VL, wherein HP.sub.VS is a concentration of very small HDL-P subclasses, HP.sub.ML is a concentration of medium and large HDL-P subclasses, and HP.sub.VL is a concentration of very large HDL-P subclasses; identify that the concentration of HP.sub.VL in the blood, plasma or serum sample is elevated when the HP.sub.VL concentration of the sample is ≥80% of the HP.sub.VL concentration of a population norm; calculate an HDL interaction risk parameter using the concentration measurements of at least two of HP.sub.VS, HP.sub.ML, and HP.sub.VL; and provide a risk assessment of the subject for having a cardiac event and/or CHD using the HDL interaction risk parameter.
15. The system of claim 14, wherein the circuit is on board or in communication with an NMR spectrometer for acquiring at least one NMR spectrum of the in vitro blood, plasma or serum sample.
16. The system of claim 14, wherein the at least one processor is configured to provide the risk assessment only when the concentration of HP.sub.VL in the blood, plasma or serum sample is elevated.
17. The system of claim 14, wherein the at least one processor is configured to screen subjects that may benefit from an HDL risk stratification test by identifying if the subject has elevated high density lipoprotein-cholesterol (HDL-C) that is at least one of ≥60 mg/dL, ≥80 mg/dL, or ≥100 mg/dL.
18. The system of claim 14, wherein the HP.sub.VS includes HDL subpopulations having a size from 7.4 nm to 7.6 nm, wherein the HP.sub.ML includes HDL subpopulations having a size from 8.3 nm to 10.9 nm, and wherein the HP.sub.VL includes HDL subpopulations having a size from 11 nm to 13.5 nm.
19. The system of claim 14, wherein the at least one processor is configured to generate a report that visually and/or textually indicates whether the subject is at increased risk of CHD despite having elevated HP.sub.VL.
20. The system of claim 19, wherein the HDL interaction risk parameter includes R1, P1, P1/R1, P1+R1, or combinations thereof, wherein P1 is a product of HP.sub.VS and HP.sub.ML, and wherein R1 is a ratio of HP.sub.VL to HP.sub.ML.
Description
BRIEF DESCRIPTION OF THE FIGURES
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(25) The foregoing and other objects and aspects of the present invention are explained in detail in the specification set forth below.
DETAILED DESCRIPTION OF EMBODIMENTS OF THE INVENTION
(26) The present invention now is described more fully hereinafter with reference to the accompanying drawings, in which embodiments of the invention are shown. This invention may, however, be embodied in many different forms and should not be construed as limited to the embodiments set forth herein; rather, these embodiments are provided so that this disclosure will be thorough and complete, and will fully convey the scope of the invention to those skilled in the art.
(27) Like numbers refer to like elements throughout. In the figures, the thickness of certain lines, layers, components, elements or features may be exaggerated for clarity. Broken lines illustrate optional features or operations unless specified otherwise.
(28) The terminology used herein is for the purpose of describing particular embodiments only and is not intended to be limiting of the invention. As used herein, the singular forms “a”, “an” and “the” are intended to include the plural forms as well, unless the context clearly indicates otherwise. It will be further understood that the terms “comprises” and/or “comprising,” when used in this specification, specify the presence of stated features, integers, steps, operations, elements, and/or components, but do not preclude the presence or addition of one or more other features, integers, steps, operations, elements, components, and/or groups thereof. As used herein, the term “and/or” includes any and all combinations of one or more of the associated listed items. As used herein, phrases such as “between X and Y” and “between about X and Y” should be interpreted to include X and Y. As used herein, phrases such as “between about X and Y” mean “between about X and about Y.” As used herein, phrases such as “from about X to Y” mean “from about X to about Y.”
(29) Unless otherwise defined, all terms (including technical and scientific terms) used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. It will be further understood that terms, such as those defined in commonly used dictionaries, should be interpreted as having a meaning that is consistent with their meaning in the context of the specification and relevant art and should not be interpreted in an idealized or overly formal sense unless expressly so defined herein. Well-known functions or constructions may not be described in detail for brevity and/or clarity.
(30) It will be understood that, although the terms first, second, etc. may be used herein to describe various elements, components, regions, layers and/or sections, these elements, components, regions, layers and/or sections should not be limited by these terms. These terms are only used to distinguish one element, component, region, layer or section from another region, layer or section. Thus, a first element, component, region, layer or section discussed below could be termed a second element, component, region, layer or section without departing from the teachings of the present invention. The sequence of operations (or steps) is not limited to the order presented in the claims or figures unless specifically indicated otherwise.
(31) The term “programmatically” means carried out using computer program directed operations. The terms “automated” and “automatic” means that the operations can be carried out with minimal or no manual labor or input. The term “semi-automated” refers to allowing operators some input or activation, but the calculations and signal acquisition as well as the calculation of the concentrations of the ionized constituent(s) is done electronically, typically programmatically, without requiring manual input.
(32) The term “about” refers to +/−10% (mean or average) of a specified value or number.
(33) The term “circuit” refers to an entirely software embodiment or an embodiment that includes a combination of software and hardware components. The circuit can be a distributed system using a wireless and/or internet connection or a system that resides on one apparatus.
(34) The terms CAD and CHD are used interchangeably and broadly to refer to a patient or subject's risk of developing or having coronary artery and/or coronary heart disease or other negative cardiac event.
(35) The terms “population norm” and “standard” value associated with a lipoprotein measurement can be the values defined by a large study such as the Framingham Offspring Study or the Multi-Ethnic Study of Atherosclerosis (MESA). However, the instant invention is not limited to these population values as the presently defined normal or high ranges of at-risk population values (e.g. concentrations or levels) may change over time.
(36) The flowcharts and block diagrams of certain of the figures herein illustrate the architecture, functionality, and operation of possible implementations of analysis models and evaluation systems and/or programs according to the present invention. In this regard, each block in the flow charts or block diagrams represents a module, segment, operation, or portion of code, which comprises one or more executable instructions for implementing the specified logical function(s). It should also be noted that in some alternative implementations, the functions noted in the blocks might occur out of the order noted in the figures. For example, two blocks shown in succession may in fact be executed substantially concurrently or the blocks may sometimes be executed in the reverse order, depending upon the functionality involved.
(37) As is generally accepted, HDL-cholesterol and/or LDL-cholesterol levels provided by conventional lipid panels fail to sufficiently differentiate populations with and without elevated risk for CHD or CAD. As is known to those of skill in the art, the Framingham study proposed a relatively lengthy risk model that considers many factors such as age, gender, smoking habits, as well as cholesterol values. The research conducted in the Framingham Offspring Study also defined normative and at-risk population values from subjects in the study. See Wilson et al., Impact of National Guidelines for Cholesterol Risk Factor Screening. The Framingham Offspring Study, JAMA, 1989; 262; 41-44.
(38) The term “protective HDL-P” refers to HDL-P parameters that have a statistical probability of being inversely associated with risk of CHD and/or providing anti-atherogenic protection against one or more of atherosclerosis, CHD and/or myocardial infarction (“MI”). The term “NP-HDL” refers to HDL-P parameters which do not provide a statistical probability of inverse risk association for one or more of atherosclerosis, CHD or myocardial infarction (MI). The NP-HDL may be merely “neutral” as to being associated with an increased risk or may be considered to present a positive risk, be atherogenic and/or provide an increased risk of atherosclerosis, CHD or MI.
(39) Lipoproteins include a wide variety of particles found in plasma, serum, whole blood, and lymph, comprising various types and quantities of triglycerides, cholesterol, phospholipids, sphyngolipids, and proteins. These various particles permit the solubilization of otherwise hydrophobic lipid molecules in blood and serve a variety of functions related to lipolysis, lipogenesis, and lipid transport between the gut, liver, muscle tissue and adipose tissue.
(40) In blood and/or plasma, HDL has been classified in many ways, generally based on physical properties such as density or electrophoretic mobility or measures of apolipoprotein A-1 (Apo A-1), the main protein in HDL. Classification based on nuclear magnetic resonance (NMR) determined particle size can distinguish a number of discrete components for each of VLDL, HDL and LDL subclasses.
(41) The NMR derived estimated HDL-P particle sizes for H1-H26 (
(42) It is also noted that while NMR measurements of the lipoprotein particles are contemplated as being particularly suitable for the analyses described herein, it is contemplated that other technologies may be used to measure these parameters now or in the future and embodiments of the invention are not limited to this measurement methodology. It is also contemplated that different protocols using NMR may be used (e.g., including different deconvolving protocols) in lieu of the deconvolving protocol described herein. See, e.g., Kaess et al., The lipoprotein subtraction profile: heritability and identification of quantitative trait loci, J Lipid Res. Vol. 49 pp. 715-723 (2008); and Suna et al., 1H NMR metabolomics of plasma lipoprotein subclasses: elucidation of metabolic clustering by self-organising maps, NMR Biomed. 2007; 20: 658-672. Flotation and ultracentrifugation employing a density-based separation technique for evaluating lipoprotein particles and ion mobility analysis are alternative technologies for measuring lipoprotein subclass particle concentrations.
(43) Generally stated, it is believed that accurate CHD risk stratification may depend on recognizing that there is a fundamentally different relationship of HDL with CHD risk depending on whether levels of the very large HDL subclass (HP.sub.VL) are elevated or not. A subset of patients with elevated levels of HP.sub.VL have high CHD risk, possibly because their HDL particles are dysfunctional and/or proatherogenic. Identification of this high-risk subset can be made by calculating the relative amounts of HP.sub.VL and other defined HDL particle subpopulations.
(44) As shown in
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(47) Embodiments of the invention classify lipoprotein particles into subclasses grouped by size ranges based on functional/metabolic relatedness as assessed by their correlations to CHD risk as shown in
(48) HDL-P sizes typically range (on average) from between about 7 nm to about 15 nm, more typically about 7.3 nm to about 14 nm. The HDL subclasses of different size can be quantified from the amplitudes of their spectroscopically distinct lipid methyl group NMR signals. See, Jeyarajah et al., Lipoprotein particle analysis by nuclear magnetic resonance spectroscopy, Clin Lab Med. 2006; 26: pp. 847-870, the contents of which are hereby incorporated by reference as if recited in full herein. The HDL-P concentration is the sum of the particle concentrations of all of the respective HDL subpopulations.
(49) The term “very small” HDL particle subclasses (HP.sub.VS) refers to HDL particle subclasses or HDL subpopulations with estimated (average) diameter sizes <7.6 nm, typically 7.4 nm≤HP.sub.VS<7.6 nm.
(50) The term “very large” HDL particle subclasses (HP.sub.VL) refers to HDL particle subclasses or HDL subpopulations with estimated (average) diameter sizes ≥11.0 nm, typically between 13.5 nm≤HP.sub.VL≤11.0 nm.
(51) The term “medium plus large” HDL particle subclasses (HP.sub.ML) refers to HDL particle subclasses or HDL subpopulations with estimated (average) diameter sizes between 8.3 nm and 10.9 nm or 10.8 nm; typically 8.3 nm≤HP.sub.ML≤10.9 nm.
(52) The term “small” HDL particle subclasses (HP.sub.S) refers to HDL particle subclasses or HDL subpopulations with estimated (average) diameter sizes between 7.6 to 8.2 nm.
(53) It is contemplated that the defined estimated ranges for one or more of HP.sub.VS, HP.sub.S, HP.sub.VL, or HP.sub.ML may vary by +/−0.1 nm or somewhat more, particularly when measured with alternative NMR deconvolving or other methods, without unduly affecting a statistical risk association and/or a subclass grouping.
(54) The term “HDL interaction risk parameter” refers to a parameter that includes two or more defined subclasses of HDL that are combined into a single component/parameter and define a positive or negative statistical risk association based on a logistic regression model.
(55) The term “CHD risk model” refers to a statistical risk model having defined parameters associated with a likelihood of having or developing CHD risk as measured by standard χ.sup.2 and/or p values (the latter with a sufficiently representative study population). The CHD risk model can be a logistic regression model.
(56) The term “P1” refers to the product of HP.sub.VS×HP.sub.ML as an HDL interaction risk parameter.
(57) The term “R1” refers to a ratio of HP.sub.VL/HP.sub.ML as an HDL interaction risk parameter.
(58) LDL is known to carry the so-called “bad” cholesterol. LDL particles come in different sizes. Conventionally, the smaller sizes have been thought to be the most dangerous type in that they were generally thought to be inherently more atherogenic than large particles. See, Sacks et al., Clinical review 163: Cardiovascular endocrinology: Low density lipoprotein size and cardiovascular disease: a reappraisal, J. Clin, Endocrinol Metab., 2003; 88: 4525-4532. Presently, LDL particle sizes are characterized as “Pattern A” (large) and “Pattern B” (small). Pattern A can be defined as large average particle sizes which typically includes sizes of between about 20.5-23.0 nm. Pattern B can be defined as smaller average particle sizes between about 18.0-20.5 nm. The LDL-P number can be defined as the sum of the small, large and IDL subclass concentrations (
(59) As shown in the chart of
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(61) As shown in
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(67) As shown conceptually in
(68) On the other hand, if the patient's level of HP.sub.VL is high or elevated (e.g., above a defined threshold or range), CHD risk is better (and potentially optimally) stratified by taking account of the relative amounts of three of the four previously discussed subgroups such as those described in
(69) In some embodiments, the HDL risk parameter combines P1 and R1 as a ratio, P1/R1.
(70) When combined as P1/R1, the HDL interaction risk parameter is represented by the below equation:
(HP.sub.VS/HP.sub.VL)(HP.sub.ML).sup.2 Equation (1)
(71) In this form, the numerator and the denominator of the first term (HP.sub.VS/HP.sub.VL) are both relatively small values (see,
(72) As shown by the right side of the graph in
(73) Alternative HDL interaction parameters may also or additionally be used such as those shown in
(74) In some embodiments, the HDL interaction parameter can be as shown in Equation (2) or Equation (3).
(HP.sub.VS)(HP.sub.ML)/(HP.sub.VL) Equation (2)
(HP.sub.ML).sup.2/(HP.sub.VL) Equation (3)
(75) It is contemplated that one or both of the new HDL interaction risk parameter(s) which can include, for example, R1, P1 alone or combined in any manner including the combinations shown in Equations (1)-(3) can be used as a marker for identifying those patients having elevated HP.sub.VL that are at increased risk of CHD.
(76) In some embodiments, a respective subject can be identified as at risk for CHD if P1/R1 has a value ≤170 μmol.sup.2/L.sup.2.
(77) HDL has been associated with a number of different functions including, for example, promoting cholesterol efflux, anti-inflammation, antioxidation, increasing nitrous oxide production, protecting against lipopolysaccharide, vasoprotective, antifibrotic, and anthithrombotic. While the identification may be sufficient to make therapy or risk management decisions on its own, it is contemplated that in some embodiments, additional tests may be carried out on these patients to identify a particular dysfunction(s) to allow for better therapy decisions. Examples of such companion or further assays that may be carried out include, but are not limited to those described in one or more of the following: U.S. Pat. No. 7,723,045 to Fogelman et al., U.S. Pat. No. 7,250,304 to Fogelman et al., U.S. 2011/0124031 to Hazen et al., U.S. Pat. No. 7,771,954 to Hazen et al.; U.S. 2011/0201947 to Hazen et al., U.S. 2010/0285517 to Hazen et al., and U.S. 2005/0244892 to Rader et al., the contents of which are hereby incorporated by reference as if recited in full herein.
(78) Different therapies that increase HDL-C by the same amount may not increase the HDL subclasses proportionately. Some drugs, for example, increase HDL-C mainly by increasing the number of small HDL particles (such as those in the fibrate class). Others increase mainly large HDL-P. The HDL particle subclass concentrations can change differentially with different therapies, indicating potentially greater or lesser clinical benefit and may provide enhanced protocols for evaluating therapeutic efficacy. See, e.g., Rashedi N, Brennan D. Kastelein J J, Nissen S E, Nicholls S. 2011 European Atherosclerosis Society meeting presentation (providing a graph illustrating the impact of a CETP inhibitor (torceptrapib) on NMR-derived lipoprotein particle parameters.
(79) Embodiments of the invention provide an automated analysis and/or report of a blood or plasma sample of a mammalian patient (typically a human) that identifies a likelihood of increased CHD risk for patients having high levels of HD.sub.VL. An HDL therapy can be adjusted, monitored or selected based on the CHD risk identification. Thus, the CHD risk using the HDL interaction risk parameter (e.g., R1 and/or P1) when a patient has elevated very large HDL-P may can be used as a risk assessment and/or therapy management tool.
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(84) Referring now to
(85) The system 10 can include a CHD risk analysis circuit for elevated large HDL-P 20 that can be on-board the analyzer 22 or remote from the analyzer 22. If the latter, the analysis module or circuit 20 can reside totally or partially on a server 150. The server 150 can be provided using cloud computing which includes the provision of computational resources on demand via a computer network. The resources can be embodied as various infrastructure services (e.g. compute, storage, etc.) as well as applications, databases, file services, email, etc. In the traditional model of computing, both data and software are typically fully contained on the user's computer; in cloud computing, the user's computer may contain little software or data (perhaps an operating system and/or web browser), and may serve as little more than a display terminal for processes occurring on a network of external computers. A cloud computing service (or an aggregation of multiple cloud resources) may be generally referred to as the “Cloud”. Cloud storage may include a model of networked computer data storage where data is stored on multiple virtual servers, rather than being hosted on one or more dedicated servers. Data transfer can be encrypted and can be done via the Internet using any appropriate firewalls to comply with industry or regulatory standards such as HIPAA. The term “HIPAA” refers to the United States laws defined by the Health Insurance Portability and Accountability Act. The patient data can include an accession number or identifier, gender, age and test data.
(86) The results of time analysis can be transmitted via a computer network, such as the Internet, via email or the like to a clinician site 50, to a health insurance agency 52 or a pharmacy 51. The results can be sent directly from the analysis site or may be sent indirectly. The results may be printed out and sent via conventional mail. This information can also be transmitted to pharmacies and/or medical insurance companies, or even patients that monitor for prescriptions or drug use that may result in an increase risk of an adverse event. The results can be sent to a patient via email to a “home” computer or to a pervasive computing device such as a smart phone or notepad and the like. The results can be as an email attachment of the overall report or as a text message alert, for example.
(87) Referring now to
(88) The digital computer 211 may also include a set of analog-to-digital converters, digital-to-analog converters and slow device I/O ports which connect through a pulse control and interface circuit 216 to the operating elements of the spectrometer. These elements include an RF transmitter 217 which produces an RF excitation pulse of the duration, frequency and magnitude directed by the digital computer 211, and an RF power amplifier 218 which amplifies the pulse and couples it to the RF transmit coil 219 that surrounds sample cell 220. The NMR signal produced by the excited sample in the presence of a 9.4 Tesla polarizing magnetic field produced by superconducting magnet 221 is received by a coil 222 and applied to an RE receiver 223. The amplified and filtered NMR signal is demodulated at 224 and the resulting quadrature signals are applied to the interface circuit 216 where they are digitized and input through the digital computer 211. The lipoprotein measurement and/or protective HDL-P analyzer circuit 20 or module 350 (
(89) After the NMR data are acquired from the sample in the measurement cell 220, processing by the computer 211 produces another file that can, as desired, be stored in the storage 215. This second file is a digital representation of the chemical shift spectrum and it is subsequently read out to the computer 213 for storage in its storage 225 or a database associated with one or more servers. Under the direction of a program stored in its memory, the computer 213, which may be a personal, laptop, desktop, workstation, notepad or other computer, processes the chemical shift spectrum in accordance with the teachings of the present invention to generate a report which may be output to a printer 226 or electronically stored and relayed to a desired email address or URL. Those skilled in this art will recognize that other output devices, such as a computer display screen, notepad, smart phone and the like, may also be employed for the display of results.
(90) It should be apparent to those skilled in the art that the functions performed by the computer 213 and its separate storage 225 may also be incorporated into the functions performed by the spectrometer's digital computer 211. In such case, the printer 226 may be connected directly to the digital computer 211. Other interfaces and output devices may also be employed, as are well-known to those skilled in this art.
(91) Certain embodiments of the present invention are directed at providing methods, systems and/or computer program products that evaluate elevated levels of large HDL-P numbers to identify those people at an increased risk of having or developing CHD that may be particularly useful in automated screening tests and/or risk assessment evaluations for CHD screening of in vitro biosamples.
(92) As will be appreciated by one of skill in the art, the present invention may be embodied as an apparatus, a method, data or signal processing system, or computer program product. Accordingly, the present invention may take the form of an entirely software embodiment, or an embodiment combining software and hardware aspects. Furthermore, certain embodiments of the present invention may take the form of a computer program product on a computer-usable storage medium having computer-usable program code means embodied in the medium. Any suitable computer readable medium may be utilized including hard disks, CD-ROMs, optical storage devices, or magnetic storage devices.
(93) The computer-usable or computer-readable medium may be, but is not limited to, an electronic, magnetic, optical, electromagnetic, infrared, or semiconductor system, apparatus, device, or propagation medium. More specific examples (a nonexhaustive list) of the computer-readable medium would include the following: an electrical connection having one or more wires, a portable computer diskette, a random access memory (RAM), a read-only memory (ROM), an erasable programmable read-only memory (EPROM or Flash memory), an optical fiber, and a portable compact disc read-only memory (CD-ROM). Note that the computer-usable or computer-readable medium could even be paper or another suitable medium, upon which the program is printed, as the program can be electronically captured, via, for instance, optical scanning of the paper or other medium, then compiled, interpreted or otherwise processed in a suitable manner if necessary, and then stored in a computer memory.
(94) Computer program code for carrying out operations of the present invention may be written in an object oriented programming language such as Java7, Smalltalk, Python, Labview, C++, or VisualBasic. However, the computer program code for carrying out operations of the present invention may also be written in conventional procedural programming languages, such as the “C” programming language or even assembly language. The program code may execute entirely on the user's computer, partly on the user's computer, as a stand-alone software package, partly on the user's computer and partly on a remote computer or entirely on the remote computer. In the latter scenario, the remote computer may be connected to the user's computer through a local area network (LAN) or a wide area network (WAN), or the connection may be made to an external computer (for example, through the Internet using an Internet Service Provider).
(95) The flowcharts and block diagrams of certain of the figures herein illustrate the architecture, functionality, and operation of possible implementations of analysis models and evaluation systems and/or programs according to the present invention. In this regard, each block in the flow charts or block diagrams represents a module, segment, operation, or portion of code, which comprises one or more executable instructions for implementing the specified logical function(s). It should also be noted that in some alternative implementations, the functions noted in the blocks might occur out of the order noted in the figures. For example, two blocks shown in succession may in fact be executed substantially concurrently or the blocks may sometimes be executed in the reverse order, depending upon the functionality involved.
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(97) As shown in
(98) The data 356 may include signal (constituent and/or composite spectrum lineshape) data 362 which may be obtained from a data or signal acquisition system 320. As will be appreciated by those of skill in the art, the operating system 352 may be any operating system suitable for use with a data processing system, such as OS/2, AIX or OS/390 from International Business Machines Corporation, Armonk, N.Y., WindowsGE, WindowsNT, Windows95, Windows98, Windows2000 or WindowsXP from Microsoft Corporation, Redmond, Wash., PalmOS from Palm, Inc., MacOS from Apple Computer, UNIX, FreeBSD, or Linux, proprietary operating systems or dedicated operating systems, for example, for embedded data processing systems.
(99) The I/O device drivers 358 typically include software routines accessed through the operating system 352 by the application programs 354 to communicate with devices such as I/O data port(s), data storage 356 and certain memory 314 components and/or the image acquisition system 320. The application programs 354 are illustrative of the programs that implement the various features of the data processing system 305 and can include at least one application, which supports operations according to embodiments of the present invention. Finally, the data 356 represents the static and dynamic data used by the application programs 354, the operating system 352, the I/O device drivers 358, and other software programs that may reside in the memory 314.
(100) While the present invention is illustrated, for example, with reference to the Module 350 being an application program in
(101) In certain embodiments, the Module 350 includes computer program may be used to indicate whether therapy intervention is desired and/or track efficacy of a therapy.
(102)
(103)
(104) As shown in
(105) Tracking of one or more of these parameters may provide better clinical indicators of efficacy of a therapy and/or a better risk predictor for CHD for patients.
(106) Future drugs or uses of known drugs can be identified, screened or tested in patients identified using the HDL-P evaluations.
(107)
(108) The concentrations can be via NMR, flotation and ultracentrifugation or ion mobility, for example (block 502).
(109) Twenty six subpopulation concentrations can be obtained, corresponding to H1 to H26, where HP.sub.VL=H21-26 (e.g., particles within about 14 nm or 13.5 nm to 11 nm), HP.sub.VS=H1+H2 (e.g., particles within about 7.4 nm-7.5 nm), and HP.sub.ML=H9-H20(particles within about 8.3-10.9 nm) (block 508).
(110) Optionally, a CHD risk based non-protective HDL number (H21-H26) and/or a protective HDL number can be calculated using one or more of: H1-H2, H-3-H8, and H-9-H20)(block 505).
(111) It is contemplated that there can be at least two different defined CHD risk tests, one for those people with low or normal levels of very large HDL-P (HP.sub.VL) and one for those with elevated levels of very large HDL-P (HP.sub.VL). The former can use the HDL-P number while the latter can have a modified test that considers the HDL risk interaction parameter.
(112) In other embodiments, a standard test can be performed on all samples and a secondary test on those with the elevated very large HDL-P (HP.sub.VL).
(113) For laboratories performing only HDL-C, where a person has high levels of HDL-C, they can be referred or a sample processed to see if there are elevated levels of very large HDL-P (HP.sub.VL).
(114) The foregoing is illustrative of the present invention and is not to be construed as limiting thereof. Although a few exemplary embodiments of this invention have been described, those skilled in the art will readily appreciate that many modifications are possible in the exemplary embodiments without materially departing from the novel teachings and advantages of this invention. Accordingly, all such modifications are intended to be included within the scope of this invention as defined in the claims. In the claims, means-plus-function clauses, where used, are intended to cover the structures described herein as performing the recited function and not only structural equivalents but also equivalent structures. Therefore, it is to be understood that the foregoing is illustrative of the present invention and is not to be construed as limited to the specific embodiments disclosed, and that modifications to the disclosed embodiments, as well as other embodiments, are intended to be included within the scope of the appended claims. The invention is defined by the following claims, with equivalents of the claims to be included therein.