Method for monitoring post-translational modification of protein
10520514 ยท 2019-12-31
Assignee
Inventors
Cpc classification
G01N21/6428
PHYSICS
G01N2333/47
PHYSICS
G01N33/54373
PHYSICS
G01N2440/38
PHYSICS
G01N2800/52
PHYSICS
International classification
G01N33/543
PHYSICS
Abstract
According to a method for monitoring post-translational modifications of protein is provided, a first microbead by binding a protein antibody to a base bead is provided. A second microbead by binding a target protein having a first post-translational modification or a second post-translational modification, which are inversely proportional to each other, to the protein antibody of the first microbead, is provided. A third microbead by binding the second microbead to a first post-translational modification antibody is provided. A fourth microbead by binding the second microbead to a second post-translational modification antibody is provided. Impedances of the third and fourth microbeads are measured. A ratio of a first difference, between the impedances of the third microbead and a reference impedance, to a second difference, between the impedances of the fourth microbead and the reference impedance, is obtained.
Claims
1. A method for monitoring post-translational modifications of protein, the method comprising: providing multiple first microbeads, each of which formed by binding multiple protein antibodies to a surface of a base bead; providing multiple second microbeads by binding multiple target proteins to the multiple protein antibodies of the multiple first microbeads, each of the multiple second microbeads having a first post-translational modification or a second post-translational modification, which are inversely proportional to each other; forming third and fourth microbeads, respectively, by separately binding first and second post-translational antibodies to different second microbeads, wherein the first post-translational modification antibodies selectively bind to the first post-translational modification of the multiple target proteins to form the third microbeads, wherein the second post-translational modification antibodies selectively bind to the second post-translational modification of the multiple target proteins to form the fourth microbeads; measuring impedances of the third microbeads and the fourth microbeads, respectively; and obtaining a ratio of a first difference to a second difference, wherein the first difference is a difference between the impedances of the third microbeads and a reference impedance, and the second difference is a difference between the impedances of the fourth microbeads and the reference impedance.
2. The method of claim 1, wherein the multiple target proteins are tau proteins.
3. The method of claim 2, wherein the first post-translational modification is phosphorylated tau protein, and the second post-translational modification is O-glycosylated tau protein.
4. The method of claim 1, wherein the base bead is a magnetic bead.
5. The method of claim 1, wherein the reference impedance is impedance of the multiple first microbeads.
6. The method of claim 1, wherein the reference impedance is impedance of the multiple second microbeads.
7. The method of claim 1, wherein obtaining the ratio of the first difference to the second difference comprises: at a first time point, obtaining the ratio of the first difference to the second difference; at a second time point which is different from the first time point, obtaining the ratio of the first difference to the second difference; and comparing the ratio of the first time point with the ratio of the second time point.
8. The method of claim 1, wherein measuring the impedances of the third microbeads and the fourth microbeads is performed with the third microbeads or the fourth microbeads being disposed between a first electrode and a second electrode.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) The above and other features of the inventive concept will become more apparent by describing in detail example embodiments thereof with reference to the accompanying drawings, in which:
(2)
(3)
(4)
DETAILED DESCRIPTION
(5) Example embodiments are described more fully hereinafter with reference to the accompanying drawings. The inventive concept may, however, be embodied in many different forms and should not be construed as limited to the example embodiments set forth herein. In the drawings, the sizes and relative sizes of layers and regions may be exaggerated for clarity. It will be understood that, although the terms first, second, third etc. may be used herein to describe various elements, components, regions, layers, patterns and/or sections, these elements, components, regions, layers, patterns and/or sections should not be limited by these terms. These terms are only used to distinguish one element, component, region, layer pattern or section from another region, layer, pattern or section. Thus, a first element, component, region, layer or section discussed below could be termed a second element, component, region, layer or section without departing from the teachings of example embodiments.
(6) Example embodiments are described herein with reference to cross sectional illustrations that are schematic illustrations of illustratively idealized example embodiments (and intermediate structures) of the inventive concept. As such, variations from the shapes of the illustrations as a result, for example, of manufacturing techniques and/or tolerances, are to be expected. Thus, example embodiments should not be construed as limited to the particular shapes of regions illustrated herein but are to include deviations in shapes that result, for example, from manufacturing. The regions illustrated in the figures are schematic in nature and their shapes are not intended to illustrate the actual shape of a region of a device and are not intended to limit the scope of the inventive concept.
(7) The terminology used herein is for the purpose of describing particular example embodiments only and is not intended to be limiting of the invention. As used herein, the singular forms a, an and the are intended to include the plural forms as well, unless the context clearly indicates otherwise. It will be further understood that the terms comprises and/or comprising, when used in this specification, specify the presence of stated features, integers, steps, operations, elements, and/or components, but do not preclude the presence or addition of one or more other features, integers, steps, operations, elements, components, and/or groups thereof.
(8) Unless otherwise defined, all terms (including technical and scientific terms) used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this inventive concept belongs. It will be further understood that terms, such as those defined in commonly used dictionaries, should be interpreted as having a meaning that is consistent with their meaning in the context of the relevant art and will not be interpreted in an idealized or overly formal sense unless expressly so defined herein.
(9) A Method for Monitoring Post-Translational Modifications of Proteins
(10)
(11) Referring to
(12) For example, the microbead (base bead) 10 may be a magnetic bead made of metal, polymer or the like. For example, a diameter of the microbead 10 may be from 1 m (micrometer) to 5 m, but it is not limited thereto. The microbead 10 having a diameter of 1 m or more can be used according to an antibody and a detection system.
(13) At least one protein antibody 20 may be bounded to a surface of the microbead 10. The microbead can be tosylated, amine treated or carboxylated, so that the microbead 10 can bind to the antibody.
(14) The protein antibody 20 can bind to a target protein. For example, the target protein for detection may be a tau protein. As the antibody for binding to the tau protein, known ones can be used.
(15) The microbead 10 combined with the protein antibody 20 may be referred to as a first microbead.
(16) And then, the target protein 30 is bound to the protein antibody 20 of the microbead 10 (S20). Appropriate incubation and washing may be performed after mixing the microbead 10 and the target protein 30, in order to bind the target protein 30 to the protein antibody 20. The target protein 30 may be tau and may be obtained from a body fluid comprising at least one of blood, blood plasma, blood serum, saliva, urine, tears, nasal mucus or cerebral spinal fluid (CSF).
(17) The microbead 10 combined with the target protein 30 may be referred to as a second microbead.
(18) And then, post-translational modification antibody capable of selectively binding according to post-translational modifications of the target protein 30 is provided, and the target protein 30 and the post-translational modification antibody are combined. (S30-1, S30-2)
(19) For example, the target protein 30 has at least two post-translational modifications (first post-translational modification and second post-translational modification), and at least two of the post-translational modified antibodies corresponding to each post-translational modifications may be provided.
(20) For example, the target protein 30 may be phosphorylated tau or O-glycosylated tau. For example, tau proteins can be O-glycosylated or phosphorylated by the reactions as illustrated in
(21) Thus, the post-translational modified antibodies includes a first post-translational modification antibody 42 capable of selectively binding to phosphorylated tau and a second post-translational modification antibody 44 capable of selectively binding to O-glycosylated, respectively.
(22) Accordingly, the number or proportion of the post-translational modified antibodies that bind to the target protein 30 may vary depending on the degree of post-translational modification of the target protein 30, which can be measured by impedance change of the microbead.
(23) The microbead S30-1 after binding with the first post-translational modification antibody 42 may be referred to as a third microbead. The microbead S30-2 after binding with the second post-translational modification antibody 44 may be referred to as a fourth microbead.
(24) According to an example embodiment of the present invention, impedance of the microbead S20 after binding with the target protein, impedance of the microbead S30-1 after binding with the first post-translational modification antibody 42 and impedance of microbead S30-2 after binding with the second post-translational modification antibody 44 are measured, respectively. In order to measure the impedance of the microbeads, a biosensor may be used. Preferably, the biosensor may have an electrode structure having a nanogap. This will be described later.
(25) The microbead S20 after binding with the target protein and the microbead after binding with the post-translational modification antibody may have impedances different from each other. For example, the impedance of the microbead after binding with the post-translational modification antibody is smaller than measured impedance of the microbead S20 after binding with the target protein. In addition, when the number of post-translational modified antibodies bound to the target protein increases, the difference in impedance of the microbeads (before bindingafter binding) may increase.
(26) Thus, a difference between the measured impedance of the microbead S20 after binding with the target protein and the impedance of the microbead after binding with the post-translational modification antibody may be a marker for the degree of post-translational modification of the target protein. However, protein amount may largely vary depending on each patient or measuring time. Thus, only absolute quantity of phosphorylated tau protein may be hardly used for index for diagnosis or prognosis of a patient.
(27) Thus, in the present invention, impedance variation by the O-glycosylated tau having a specific relationship with the phosphorylated tau, specifically in inverse relationship, is measured, and then a reliable measurement result can be obtained as to whether or not the phosphorylated tau is increased or decreased by using a ratio between the impedance variation by the phosphorylated tau and the impedance variation by the O-glycosylated tau as an index. The ratio may be used for index for diagnosis or prognosis of a patient.
(28) In some example embodiment, the impedance of the microbead S20 after binding with the target protein may be used as reference impedance, but this is exemplary. In some example embodiment, the impedance of the microbead after binding with the protein antibody 20 may be used as reference impedance.
(29) Therefore, the impedances of the post-translational modified proteins having an inversely proportional relationship with each other are respectively measured, and the change in the ratio may be used as an index, so that reliable detection results can be obtained as to whether or not the protein corresponding to the desired post-translational modification is increased or decreased.
(30) The protein antibody and the post-translational modification antibody, those currently available on the market can be used.
(31) For example, as an antibody capable of selectively binding to phosphorylated tau, Phospho-Tau(Ser202, Thr205) Antibody(AT8) MN1020(Thermo Fisher), Anti-Tau(phosphor S396) antibody [EPR2731]/ab109390(abcam), Phospho-Tau(ser202_ Antibody, #11834)(Cell signaling), Phospho-Tau(ser396) (PHF13) Mouse mAb, #9632(Cell signaling), etc. may be used. In addition, An antibody capable of selectively binding to O-glycosylated tau (an antibody capable of binding to various O-glycosylated proteins including tau), O-GlcNAc(CTD110.6) Mouse mAB, #9875(Cell signaling), etc. may be used. However, they are not limited thereto.
(32)
(33) Referring to
(34) Next, at a second time point, a sample containing tau protein is taken from the patient in September as an example, and the impedance of the microbead in step S20 is measured. The microbead in step S20 is bound to a first post-translational modification antibody capable of binding to phosphorylated tau (P Tau) and a second post-translational modification antibody capable of binding to O-glycosylated tau (Og Tau), respectively. And then, impedance is respectively measured. Thereby, the impedance Zt2 of the reference microbead (microbead not bound to the post-translational modification antibody), the impedance Zp2 of the microbead binding with the first post-translational modification antibody, and the impedance Zo2 of the microbead binding with the second post-translational modification antibody are measured, respectively. Thus, impedance reduction (Zt2-Zp2) due to the phosphorylated tau and impedance reduction (Zt2Zo2) due to the O-glycosylated tau can be obtained.
(35) Considering that it is difficult to directly quantitatively measure the phosphorylated tau as described above, reliability of determining the increase or decrease of phosphorylated tau by comparing the impedance reduction (Zt1Zp1) due to the phosphorylated tau at the first time point and the impedance reduction (Zt2Zp2) due to the phosphorylated tau at the second time point, is low
(36) However, since the phosphorylated tau has a mutually exclusive (inverse) relationship with the O-glycosylated tau, comparing the ratios of the two can be a reliable detection method.
(37) For example, at the first time point, the ratio of phosphorylated tau to O-glycosylated tau can be expressed as Zt1Zp1/Zt1Zo1 and at the second time point can be expressed as Zt2Zp2/Zt2Zo2.
(38) Therefore, it is possible to determine whether the phosphorylated tau is increased or decreased according to the direction (increase or decrease) of the change in the ratio of the phosphorylated tau to the O-glycosylated tau. Consequently, it can be an indicator of progression or improvement of disease associated with phosphorylated tau. In addition, it is possible to determine the progression or the speed or degree of the disease according to magnitude of the change.
(39) In the present embodiment, the above method was used using the detection or measurement of phosphorylated tau protein. However, the present invention is not limited thereto, and the present invention can be used for detection or measurement of all proteins with post-translational modifications of mutually exclusive relationship similar to tau protein.
(40) In the embodiment, measuring impedance is used for obtaining the index, however, exemplary embodiments of the present inventive concept are not limited thereto. According to an exemplary embodiment, other physical characteristics or chemical characteristics may be used for obtaining similar index.
(41) For example, a post-translational modification antibody may be combined with fluorescence. When a microbead is combined with the post-translational modification antibody combined with fluorescence, the microbead, which may be referred as a post-translational modification medium, may include a different amount of fluorescence depending on degree of post-translational modification of a target protein.
(42) Thus, optical characteristics such as a light intensity in response to a light having a specific wavelength, an intensity of a reflective light or the like may be measured for a first post-translational modification medium combined with a first post-translational modification antibody, and a second post-translational modification medium combined with a second post-translational modification antibody to obtain a first measured value for the first post-translational modification medium, and a second measured value for the second post-translational modification medium. The first measured value may be compared with a reference value to obtain a value, which may be a difference between the first measured value and the reference value, corresponding to variation of the optical characteristic due to a first post-translational modification. The second measured value may be compared with a reference value to obtain a value, which may be a difference between the second measured value and the reference value, corresponding to variation of the optical characteristic due to a second post-translational modification.
(43) In an exemplary embodiment, the fluorescence may be combined with the post-translational modification antibody before the post-translational modification antibody is combined with the target protein of the microbead. However, in another exemplary embodiment, the fluorescence may be combined with the post-translational modification antibody after the post-translational modification antibody is combined with the target protein of the microbead.
(44) In another exemplary embodiment, chemiluminescence may be used instead of the fluorescence.
(45) A Method of Manufacturing a Biosensor Having a Nanogap
(46)
(47) Referring to
(48) For example, the base substrate 110 may include silicon, glass, quartz, polymer, and the like.
(49) For example, the inorganic insulating layer 120 may include an insulating material such as silicon oxide or silicon nitride.
(50) The first metal layer 130 may include gold, silver, platinum, chromium, copper, titanium, alloys thereof, and the like. The first metal layer 130 may have a single layer or a stacked structure of different metal layers. In some example embodiment, the first metal layer 130 may have a two-layer structure of chrome/gold.
(51) The first photoresist pattern 140 partially covers the first metal layer 130 to partially expose an upper surface of the first metal layer 130.
(52) Referring to
(53) Referring to
(54) The second metal layer 134 may include gold, silver, platinum, chromium, copper, titanium, alloys thereof, and the like. The second metal layer 134 may have a single layer or a laminated structure of different metal layers. In some example embodiment, the second metal layer 134 may have a two-layer structure of chrome/gold.
(55) Referring to
(56) Referring to
(57) Referring to
(58) Referring to
(59) A microbead having magnetism may be inserted in the first opening OP1 of the biosensor for sensing. For example, when the microbead is provided on the biosensor and a magnetic substance is disposed under the biosensor, an attraction force in a vertical direction is applied to the microbead by the magnetic substance. When the magnetic substance is moved in a horizontal direction, the microbead outside the first opening OP1 can be inserted into the first opening OP1 by moving along the magnetic substance.
(60) When the microbead is inserted into the first opening OP1, a voltage is applied to the first electrode 132 and the second electrode 136 to measure impedance of the microbead. The microbead has different impedances depending on the number of bound antibodies and proteins. The sensed impedance may be delivered to an external device such as a signal analyzer, etc., via the contact portion 138.
(61) According to the present invention, size of electric field can be increased by using a sensor having a nanogap of 1 m or less. Therefore, a very low concentration of the protein can be easily and reliably detected.
(62) The biosensor may include an array in which a plurality of electrode pairs having the nanogaps are arranged. For example, the biosensor may include an array in which the electrode pairs having the nanogaps are arranged in 1010, 2020, 3030, and the like.
(63) Hereinafter, effects of the embodiments of the present invention will be described with reference to specific experimental examples.
(64) Providing a Microbead Binding with a Protein Antibody
(65) A tosylate-treated magnetic bead (Thermo Fisher, Dynabead M-280, diameter 2.8 m, 14203) and a tau protein binding antibody (abcam, Anti-Tau (Phosphor S262) antibody, ab64193, 50 l/250 l) are inserted in a 0.1 M PBS buffer and placed in a 37 C. incubator, and incubated on a roll mixer for 24 hours.
(66) Next, the magnetic bead bound to the tau protein binding antibody are washed with 0.4% Block ACE (AbD serotec, USA) and blocked with 0.2 M tris buffer. 30 mg/mL of the microbead solution was stored in PBST (Phosphate Buffered Saline with Tween-20, 0.01% Tween-20) containing 0.4% Block Ace.
Synthesis Example 1Providing Microbead Binding with Tau Protein
(67) The tau protein at a concentration of 5250 ng/mL was diluted 1/10 in various concentrations (0.5 fg/mL to 50 pg/mL) using 0.1% PBST. Tau protein was treated with Thiamet G, an O-glycosylation drug, if necessary.
(68) The microbead bound to the tau protein binding antibody were diluted to 300 l/ml using 0.1% PBST, and the tau protein (diluent) and the microbead (diluent) were mixed at a concentration of 1:2 and reacted in a refrigerator for 22 hours.
(69) Next, the microbead bound to the tau protein is washed twice with 0.1% PBST and washed twice with PBS (Phosphate Buffered Saline). Thereafter, it is diluted to a bead concentration of 60 l/ml using PBS.
Synthesis Example 2Providing Microbead Binding with O-Glycosylated Antibody
(70) A microbead (300 l/ml) bound to tau protein were prepared in the same manner as in Synthesis Example 1.
(71) The microbead is mixed with 10.4 ng of an antibody capable of binding O-glycosylated proteins (Cell signaling, O-GlcNAc (CTD110.6) Mouse mAB, #9875) and reacted in a refrigerator for 22 hours.
(72) The microbead bound to the O-glycosylated tau-binding antibody is washed twice with 0.1% PBST, washed twice with PBS, and diluted to a bead concentration of 60 l/ml using PBS.
Synthesis Example 3Providing Microbead Binding with Phosphorylated Tau Antibody
(73) A microbead (300 l/ml) bound to tau protein were prepared in the same manner as in Synthesis Example 1.
(74) The microbead is mixed with 10 ng of an antibody capable of binding to phosphorylated tau protein (Thermo Fisher, Phospho-Tau (Ser202, Thr205) Antibody (AT8), MN1020) and reacted in a refrigerator for 22 hours.
(75) The microbead bound to the phosphorylated tau-binding antibody is washed twice with 0.1% PBST, washed twice with PBS, and diluted to a bead concentration of 60 l/ml using PBS.
(76) The samples thus obtained were measured for impedance using a biosensor array (1010 or 2020) with an electrode interval of 0.7 m. In the following table, PBS means PBS solution not containing microbead, Neg means a sample that does not bind to a tau protein but contains a microbead having only a protein binding antibody, BAT (bead-antibody-tau) means a sample containing microbead binding with tau protein, and BAT2(bead-antibody-tau-2nd_antibody) means a sample in which microbead binding with tau protein are treated with O-GlcNAc or AT8. In addition, impedance change rate is a value (%) obtained by dividing a difference between the impedance Zneg of Neg and the impedance BAT or BAT2 of divided by the impedance Zneg of Neg and multiplied by 100. Impedance change rate difference is defined as a value obtained by subtracting the impedance change rate of BAT from the impedance change rate of BAT2.
(77) Table 1-1 below shows the impedance of samples not treated with Thiamet G for tau protein. Table 1-2 shows the impedance of samples treated with 100 uM Thiamet G for tau protein. The impedance change was measured by the concentration of tau protein.
(78) TABLE-US-00001 TABLE 1-1 Impedance change BAT (M) BAT2 (M) rate difference (%) PBS 213 213 Neg 196 196 0.5 fg/ml 185 181 2.3 5.2 fg/ml 177 165 5.9 52.4 fg/ml 139 140 0.2 524 fg/ml 127 116 5.6
(79) TABLE-US-00002 TABLE 1-2 Impedance change BAT (M) BAT2 (M) rate difference (%) PBS 220 220 Neg 189 189 0.5 fg/ml 185 171 7.5 5.2 fg/ml 168 130 20.4 52.4 fg/ml 143 88.3 28.9 524 fg/ml 126 63.8 32.8
(80) Referring to Tables 1-1 and 1-2, when the concentration of Thiamet G was increased, that is, when O-glycosylation of tau protein was increased, it was confirmed that the impedance change rate difference for the microbead combined with O-glycosylated antibody was greatly increased. Therefore, it can be confirmed that increase or decrease of O-glycosylation of tau protein can be detected through this. In addition, even at very low tau protein concentrations, for example, 0.5 fg/ml, the impedance change rate difference can be seen.
(81) Table 2-1 below shows impedance of a sample in which the microbead bound to Thiamet G-treated tau protein (0.5 pg/ml) is reacted with O-GlcNAc. Impedance change was measured by Thiamet G concentration (0 uM, 10 uM, 30 uM, 100 uM). Table 2-2 shows impedance of a sample in which the microbead bound to Thiamet G-treated tau protein (0.5 pg/ml) is reacted with AT8.
(82) TABLE-US-00003 TABLE 2-1 BAT BAT-BAT2 Impedance change (M) BAT2 (M) (M) rate difference (%) PBS 304.6 304.6 Neg 264.2 264.2 0 uM 206.6 196.3 10.3 3.89 10 uM 194.7 190.4 4.3 1.62 30 uM 195.2 183.6 11.6 4.39 100 uM 199.1 168.6 30.5 11.54
(83) TABLE-US-00004 TABLE 2-2 BAT-BAT2 Impedance change BAT (M) BAT2 (M) (M) rate difference (%) PBS 88.86 88.86 Neg 45.99 45.99 0 uM 36.47 31.23 5.24 11.39 100 uM 36.13 35.54 0.59 1.28
(84) Table 3 below shows impedance difference between BAT and BAT2 (BATBAT2 or BAT2BAT) for the impedance of Neg in Table 2-1 and Table 2-2, and ratio of impedance change due to phosphorylated tau (P) and O-glycosylated tau (O)
(85) TABLE-US-00005 TABLE 3 Thiamet G content O ((BAT-BAT2)/Neg) P ((BAT2-BAT)/Neg) P/O 0 uM 0.0389 0.1139 14.552 100 uM 0.1154 0.0128 0.111
(86) Referring to Table 3, an increase in the concentration of Thiamet G may be regarded as an increase in O-glycosylated tau, that is, a decrease in phosphorylated tau. Thus, decrease in phosphorylated tau can be detected from decrease of the value of P/O.
(87) Exemplary embodiments of the present invention may be used for monitor prognosis, course, treatment response, etc. of disease through protein detection. In addition, it can also be applied to a platform for developing therapeutic agents for diseases such as tauopathy.
(88) The foregoing is illustrative and is not to be construed as limiting thereof. Although a few exemplary embodiments have been described, those skilled in the art will readily appreciate that many modifications are possible in the exemplary embodiments without materially departing from the novel teachings, aspects, and advantages of the invention. Accordingly, all such modifications are intended to be included within the scope of this disclosure.