ACOUSTOFLUIDIC CENTRIFUGE FOR NANOPARTICLE ENRICHMENT AND SEPARATION
20230008026 · 2023-01-12
Inventors
Cpc classification
B01D21/283
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/0652
PERFORMING OPERATIONS; TRANSPORTING
G01N21/6428
PHYSICS
C12Q2563/173
CHEMISTRY; METALLURGY
C12Q1/6806
CHEMISTRY; METALLURGY
C12Q2563/173
CHEMISTRY; METALLURGY
G01N1/4077
PHYSICS
C12Q1/6806
CHEMISTRY; METALLURGY
B01L2400/0436
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502761
PERFORMING OPERATIONS; TRANSPORTING
International classification
B01L3/00
PERFORMING OPERATIONS; TRANSPORTING
B01D21/28
PERFORMING OPERATIONS; TRANSPORTING
C12Q1/6806
CHEMISTRY; METALLURGY
Abstract
The present disclosure provides for acoustofluidic centrifuge systems that can enrich and separate nanoparticles disposed in a fluid, such as liquid droplets, in a fast and efficient manner. Exemplary systems include a sound wave generator, such as a pair of slanted interdigitated transducers, and a containment boundary, such as a PDMS ring. The sound wave generator can produce surface acoustic waves that are capable of driving droplets to spin in a manner that can separate different sized particles into groups. In some embodiments, the acoustofluidic centrifuge system can include a plurality of containment boundaries in fluid communication with each other, allowing particles to separate between the containment boundaries. Methods of operating such systems, including methods of isolating different exosome subpopulations, are also disclosed.
Claims
1. An acoustofluidic centifuge system, comprising: at least one sound wave generator; and at least one containment boundary configured to encapsulate at least a portion of a fluid droplet, wherein the sound wave generator is configured to generate acoustic waves that propagate towards the at least one containment boundary to cause the at least a portion of a fluid droplet encapsulated therein to spin along a central axis.
2. The system of claim 1, wherein the at least one sound wave generator comprises at least one interdigitated transducer.
3. The system of claim 2, wherein the at least one interdigitated transducer is slanted.
4. The system of claim 2, wherein the at least one interdigitated transducer comprises a pair of opposed interdigitated transducers, each transducer of the pair being disposed on opposite sides of the at least one containment boundary.
5. The system of claim 4, wherein the pair of opposed interdigitated transducers are slanted.
6. The system of claim 1, wherein the at least one containment boundary comprises a circular ring.
7. (canceled)
8. The system of claim 1, wherein the at least one containment boundary comprises two containment boundaries, the two containment boundaries being in communication with each other by way of a channel disposed therebetween.
9. (canceled)
10. A method of separating nanoparticles, comprising: generating at least one sound wave such that the sound wave propagates to at least one containment boundary having at least a portion of one fluid droplet disposed therein, the at least one fluid droplet having a plurality of nanoparticles disposed therein; wherein the at least one sound wave causes the at least a portion of one fluid droplet to rotate, and wherein rotation of the at least a portion of one fluid droplet causes at least a first nanoparticle of the plurality of nanoparticles to travel along a first trajectory of a plurality of trajectories and at least a second nanoparticle of the plurality of nanoparticles to travel along a second trajectory of the plurality of trajectories, the first and second trajectories being different traj ectories.
11. The method of claim 10, wherein generating at least one sound wave further comprises providing current to at least one acoustic transducer, which propagates at least one acoustic wave to the at least one containment boundary.
12. The method of claim 10, wherein generating at least one sound wave further comprises providing current to at least one interdigitated transducer, which propagates at least one acoustic wave to the at least one containment boundary.
13. The method of claim 10, wherein the at least one sound wave deforms a liquid-air interface of the at least a portion of one fluid droplet, resulting in the at least a portion of one fluid droplet to rotate.
14. The method of claim 10, wherein at least one trajectory of the plurality of trajectories along which at least one nanoparticle of the plurality of nanoparticles travels comprises a helical path.
15. The method of claim 13, wherein at least one of the at least one nanoparticle that travels along the first trajectory and the at least one nanoparticle that travels along the second trajectory travels along a vortex-shaped streamline and is influenced by an angular momentum of the rotation of the at least a portion of one fluid droplet.
16. The method of claim 10, wherein the rotation of the at least a portion of one fluid droplet has a dual-axis rotational trajectory.
17. The method of claim 10, further comprising controlling an acoustic streaming speed of the at least a portion of one fluid droplet.
18. The method of claim 16, wherein controlling an acoustic streaming speed of the at least a portion of one fluid droplet further comprises controlling at least one of an acoustic wave amplitude, a frequency of an acoustic wave, an angle at which an acoustic wave is delivered, and a location of the acoustic wave.
19. (canceled)
20. The method of claim 10, wherein travel along the first trajectory or the second trajectory is based on a size of the nanoparticles of the plurality of nanoparticles.
21. The method of claim 10, wherein the at least one containment boundary comprises a plurality of containment boundaries in fluid communication with each other, the plurality of containment boundaries comprising a first containment boundary and a second containment boundary, wherein the at least one sound wave causing the at least a portion of one fluid droplet to rotate further comprises causing a first at least a portion of one fluid droplet to rotate in the first containment boundary and causing a second at least a portion of one fluid droplet to rotate in the second containment boundary, and wherein causing at least a first nanoparticle of the plurality of nanoparticles to travel along a first trajectory and causing at least a second nanoparticle of the plurality of nanoparticles to travel along a second trajectory comprises passing at least one of the first nanoparticles or the second nanoparticles through a channel disposed between the first containment boundary and the second containment boundary.
22. (canceled)
23. A method of isolating different extracellular vesicle subpopulations, comprising: mixing DNA strands disposed in at least a portion of a fluid droplet with a fluorescent marker; intercalating the at least a portion of a fluid droplet such that the DNA strands are able to express a fluorescent signal; and activating an acoustic signal to activate the fluorescent marker in a manner such that concentrated DNA strands express an amplified fluorescent signal.
24. The method of claim 23, wherein activating an acoustic signal to activate the fluorescent marker in a manner such that concentrated DNA strands express an amplified fluorescent signal further comprises: operating at least one sound wave generator to produce the acoustic signal, wherein the at least a portion of a fluid droplet is encapsulated by at least one containment boundary, and wherein the acoustic signal is effective to cause the at least a portion of a fluid droplet to spin along a central axis of at least one of the at least a portion of a fluid droplet or the containment boundary.
25. (canceled)
26. The method of claim 23, wherein activating an acoustic signal further comprises generating at least one sound wave such that the sound wave propagates to at least one containment boundary having the at least a portion of one fluid droplet disposed therein.
27. (canceled)
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0023] The accompanying Figures are provided by way of illustration and not by way of limitation. The foregoing aspects and other features of the disclosure are explained in the following description, taken in connection with the accompanying example figures (also “FIG.”) relating to one or more embodiments:
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DETAILED DESCRIPTION
[0046] Certain exemplary embodiments will now be described to provide an overall understanding of the principles of the structure, function, manufacture, and use of the devices and methods disclosed herein. One or more examples of these embodiments are illustrated in the accompanying drawings. Those skilled in the art will understand that the devices and methods specifically described herein and illustrated in the accompanying drawings are non-limiting exemplary embodiments and that the scope of the present disclosure is defined solely by the claims. The features illustrated or described in connection with one exemplary embodiment may be combined with the features of other embodiments. Such modifications and variations are intended to be included within the scope of the present disclosure.
[0047] Articles “a” and “an” are used herein to refer to one or to more than one (i.e., at least one) of the grammatical object of the article. By way of example, “an element” means at least one element and can include more than one element. “About” is used to provide flexibility to a numerical range endpoint by providing that a given value may be “slightly above” or “slightly below” the endpoint without affecting the desired result. The use herein of the terms “including,” “comprising,” or “having,” and variations thereof, is meant to encompass the elements listed thereafter and equivalents thereof as well as additional elements. As used herein, “and/or” refers to and encompasses any and all possible combinations of one or more of the associated listed items, as well as the lack of combinations where interpreted in the alternative (“or”).
[0048] Moreover, the present disclosure also contemplates that in some embodiments, any feature or combination of features set forth herein can be excluded or omitted. To illustrate, if the specification states that a complex comprises components A, B and C, it is specifically intended that any of A, B, or C, or a combination thereof, can be omitted and disclaimed singularly or in any combination. Similarly, to the extent features or steps are described herein as being a “first feature” or “first step,” or a “second feature” or “second step,” such numerical ordering is generally arbitrary, and thus such numbering can be interchangeable. Moreover, a person skilled in the art will appreciate that not all of the method steps disclosed herein are required, and, in view of the present disclosure, will understand how modifications can be made to each step, the order of the steps, the limitation of certain steps, etc. without departing from the spirit of the present disclosure while still achieving the desired goals.
[0049] Recitation of ranges of values herein are merely intended to serve as a shorthand method of referring individually to each separate value falling within the range, unless otherwise indicated herein, and each separate value is incorporated into the specification as if it were individually recited herein. For example, if a concentration range is stated as approximately in the range of about 1% to about 50%, it is intended that values such as approximately in the range of about 2% to about 40%, approximately in the range of about 10% to about 30%, or approximately in the range of about 1% to about 3%, etc., are expressly enumerated in this specification. These are only examples of what is specifically intended, and all possible combinations of numerical values between and including the lowest value and the highest value enumerated are to be considered to be expressly stated in this disclosure, as are values slightly above and/or slightly below those ranges at least in instances in which the term “about” is used. A number of terms may be used throughout the disclosure interchangeably but will be understood by a person skilled in the art.
[0050] Unless otherwise defined, all technical terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure belongs. Additionally, like-numbered components across embodiments generally have similar features unless otherwise stated or a person skilled in the art would appreciate differences based on the present disclosure and his/her knowledge. Accordingly, aspects and features of every embodiment may not be described with respect to each embodiment, but those aspects and features are applicable to the various embodiments unless statements or understandings are to the contrary.
[0051] One aspect of the present disclosure provides an acoustofluidic centrifuge system, and related methods for using the same, that uses acoustically driven spinning droplets to manipulate particles with sizes down to a few nanometers. The system can comprise a sound wave generator, such as at least one transducer (often times a pair of transducers), and one or more containment boundaries, such as one or more rings. More particularly, in some embodiments the transducer(s) can include slanted interdigitated transducers (IDTs) and the containment boundary(ies) can include a containment ring, such as a polydimethylsiloxane (PDMS) containment ring. The containment ring can be a circular ring configured to retain a fluid droplet in an approximately hemispherical dome shape.
[0052] The droplet can provide a medium for an analyte (e.g., micro- to nano-sized particles). The fluid, or fluid-like, droplet(s) can be any suitable liquid or other material capable of creating the desired particle movement. The volume of the droplet can be varied according to the application, ranging from nanoliters to microliters.
[0053] The IDTs can be configured to generate surface acoustic waves (SAWs), which can propagate toward the droplet and drive the droplet to spin along a central axis. This spinning motion can initiate transfer momentum to the fluid in a manner that increases the inner streaming velocity and shear rate within the droplet. Particles within the droplet can follow a corresponding helical trajectory and can be rapidly concentrated to a center of the droplet as a result of the combination of the acoustic radiation force and drag force. The spin rate can be tuned to accommodate various analytes, for example, by changing a volume of the droplet and/or the size of the PDMS containment ring, sometimes referred to as a confinement ring.
[0054] In some embodiments, an acoustofluidic centrifuge system can include two or more PDMS rings that can be connected by a microchannel, and one or more pairs of IDTs. By using dual rotating droplets in close proximity to one another, it can be possible to separate nanoparticles of various sizes by moving particles from one droplet to another. A dual-droplet system can also be further expanded to a multistage nanoparticle separation or enrichment system in which multiple groups of nanoparticles can be separated into different outlets in one device.
[0055] The systems and method disclosed herein advantageously allow analytes such as nanoparticles, exosomes, strands of DNA, etc., to be concentrated within a short period of time (e.g., less than one minute). The system can be adapted for a variety of applications, such as simplifying transfection, automating vesicle cargo loading, and/or accelerating liquid biopsies.
[0056]
[0057] The first and second legs 26, 28 and 36, 38 can extend substantially parallel to each other, though they do not have to be parallel with respect to each other, and can connect to a power supply, as represented by +/− lines 16, 18. Any suitable power supply can be used, including but not limited to linear power supplies, switched power supplies, and battery-based power supplies, and such power supplies can provide alternating current and/or direct current as desired. The power supply can be coupled to and/or provided as part of the substrate 12, and/or the power supply can be “off-chip,” meaning it can be disposed separate from the substrate 12 but is still in electrical communication with the sound wave generator 20. The power supply can provide current across the IDTs 22, 32, in turn propagating sound waves 80, 82, also referred to as acoustic waves, along the substrate 12 across each respective IDT 22, 32 and towards the opposed IDT 32, 22. A voltage provided by the power supply can be approximately in the range of about 1 Volt to about 300 Volts, although those amounts are by no means limiting. The amount of voltage supplied, and the amount of current that is provided, can vary based on a variety of factors, including but not limited to the IDT design. As shown, because the containment boundary 40 is disposed between the IDTs 22, 32, the resulting sound waves 80, 82 propagate towards the containment boundary 40, and a droplet 44 disposed therein. As shown more particularly in
[0058] The containment boundary 40, as shown a containment ring 42, can be disposed between the IDTs 22, 32. In the illustrated embodiment, it is disposed approximately centrally between the IDTs 22, 32 and approximately centrally with respect to the substrate 12, although other locations are possible. A central location, however, can assist in balancing forces in a design like the illustrate acoustofluidic system 10. The containment boundary 40 can be designed or otherwise configured to encapsulate a portion of a droplet 44, up to an entire droplet as shown, or even more than one droplet. It can also be designed to or otherwise configured to define a shape of the droplet portion 44. The containment boundary 40 confines the boundary of the fluid such that, when a droplet portion 44 (e.g., water droplet) is added to the containment boundary 40, it forms its equilibrium hemispherical shape when gravity and surface tension forces are balanced. It can be advantageous for the defined shape of the droplet 44 to be circular, or substantially circular, and thus often the containment boundary 40 can be circular, such as the illustrated ring-shape. The containment boundary 40 can be made of one or more materials. While there are many suitable materials, including but not limited to polymers and/or plastics, in one exemplary embodiment the containment boundary 40 can be made of PDMS.
[0059] The containment boundary 40 can be attached to the substrate 12 using a variety of techniques known to those skilled in the art, but in the illustrated embodiment, an adhesive is used to couple the containment boundary 40 to the substrate 12. The droplet portion 44 can be disposed within the containment boundary 40 using any known techniques for dispensing a droplet to a desired location, such as a pipette or syringe.
[0060] As illustrated in
[0061]
[0062] The droplet portion 44 spinning can experience three regimes from a non-spinning mode to a stable spinning mode. First, with a small acoustic amplitude excitation, internal vortex streaming can be generated while the droplet portion 44 remains in its equilibrium shape due to insufficient acoustic radiation pressure acting on the interface and the intensity of acoustic streaming. Second, as the acoustic amplitude increases, the length of the acoustic wave propagation before being fully attenuated can become longer and the vortex streaming can be enhanced as well. These effects can tend to break the equilibrium of the liquid-air interface while bottom and side boundaries of the droplet portion 44 can remain constrained within the containment boundary 40, which can result in slight oscillations of the fluid surface. Third, as momentum accumulates and the surface tension of the droplet portion 44 attempts to remain in balance with the acoustic radiation pressure and centrifugal force, the droplet portion 44 can gradually deform into a concave ellipsoid shape and can reach a stable spin mode with a periodic rotational boundary deformation, forming a “rotational capillary wave” that propagates along a free surface of the droplet portion 44. In this mode, particles 46 within the droplet portion 44 tend to migrate towards a center of the droplet portion 44, following a dual-axis rotational trajectory. One axis is with respect to the droplet 44 and the other axis is with respect to the particle. This dual-axis particle trajectory can follow a helical path 48 with the particle 46 itself also rotating, for example in the direction R, as shown in the inset bb of
[0063] As noted above, while the present disclosure contemplates utilizing sound wave generators 20 like the IDTs 22, 32 to spin the droplet portion 44, a person skilled in the art will appreciate there are other ways by which spinning of the droplet portion 44 can be induced.
[0064] As indicated in
[0065] where n is the spherical harmonic degree that corresponds to the lobe number during spin, r is the radius of the droplet portion 44 (e.g., the radius of the spherical cap), a is the surface tension, and ρ.sub.liquid and ρ.sub.air are the density of the liquid and air, respectively. This oscillation equation can calculate the free oscillation frequency of a spherical droplet portion whose lobes repeatedly stretch and contract without spinning, as opposed to the continuous rotational deformation observed in the presently disclosed platform 10. The radius of the droplet portion 44 can be calculated from the volume of the droplet portion 44; a pipette can be used to generate a droplet portion with the known volume V, and given that the containment boundary 40 can be modeled as having a radius a and a height h, the radius of the droplet portion 44 can be calculated using the following relationship in Equation 2:
For example, for a containment boundary that is a PDMS ring with a radius of 1.00 mm and a height of 0.55 mm, a 10.0 μL droplet has a radius of approximately 1.29 mm. There is a consistent correlation between the measured spin speed and the oscillation speed calculated using Equation 1. Thus, the spinning droplet portion 44 and the standard oscillatory motion can be similar, where the droplet portion 44 is forced from its equilibrium state in both cases. In some experiments, droplets with volumes approximately in the range of about 60 nL to about 90 μL were tested, which correspond to droplet radii approximately in the range of about 0.3 mm to about 3.6 mm.
[0066] Spin can generally be excited over a wide range of frequencies as long as the acoustic wave enters the droplet portion 44 from a position that has a slight bias from its center line. Further, frequency changes will not generally cause a major change to the spin speed. This is understandable at least because the rotational speed is primarily determined by the properties of the droplet portion 44 instead of the external excitation (as per Equation 1). On the other hand, as the applied power is increased, the droplet portion 44 will typically initially maintain its equilibrium shape, and then start to experience small oscillations until the acoustic power reaches a threshold value. At this threshold, the droplet 44 can enter its stable spinning mode, with the updated equilibrium shape (e.g., a concave ellipsoid shape) being further stretched with increased power, while the spin rate will not typically be affected. Notably, with higher droplet volumes, higher-order spin modes can be observed when the droplet 44 begins to spin, with four or six lobed droplets forming during rotation.
[0067] Turning to the motion of particles 46 within the spinning droplet 44, SAWs 80, 82 can induce acoustic streaming vortices inside the droplet portion 44. Further, particles 46 can be subject to both a drag force, which can arise from acoustic streaming, and an acoustic radiation force. To the extent these aspects have been studied prior to the present disclosure, it is believe to primarily relate to microparticles within a droplet that has a static shape. Within a spinning droplet, unlike the curvilinear particle path in a traditional SAW-driven droplet, particles (e.g., nanoparticles) move not only along the vortex-shaped streamline, but are also influenced by the angular momentum of the continuously rotating droplet. Experimentally, it was found that particles move along helical trajectories that correspond to a Stokes drift effect, while the localized spinning motion causes the water wave at the liquid-air interface to propagate along a circular path and results in a rotating Stokes drift. As a result, the particles 46 can follow a helical-shaped trajectory, such as the path 48 shown in the inset bb of
[0068] The trajectory or path at which a particle travels can be controlled by a variety of factors, including but not limited to droplet spinning speed and/or acoustic parameters. Acoustic parameters can include acoustic wave amplitude, frequency, an angle at which the wave is delivered, and/or a location of the wave. Streaming velocity and direction can be controlled by each of these parameters, which in turn can allow for particle trajectories or paths to be controlled.
[0069]
[0070] After quantifying the particle velocity inside the droplet 144, it was determined that the droplet spin and the resulting localized rotation trajectory have a more significant effect than simply modifying the trajectory of the particles as they travel toward the center 144C of the droplet 144. Further experimentation determined that at low power levels, velocities of the particles 146 between the experiment and simulation had a very small difference. However, the velocity difference became larger, with as much as an approximately 80 mm/s variance once a higher power was applied. Moreover, the shear rate inside a spinning droplet can increase and can be positively correlated with the spin speed. Compared to a non-spinning droplet in which a shear rate is only generated by vortex acoustic streaming, the shear rate of a spinning droplet increases several times over as the rotational rate increases. Further, unlike the normal acoustic-streaming-induced shear rate distribution that usually decreases rapidly away from a boundary, the shear rates within the spinning droplet can remain high near the droplet center. This can potentially explain the rapid concentration of the microparticles provided for herein because the droplet spinning can enhance both vortex streaming velocity and fluid deformation within a droplet. While the entire fluid domain can be shown as spinning, the essence of this spinning motion can be the boundary periodic deformation along the radial axis. This continuous boundary deformation can generate a secondary-flow along the radial direction, which can push the particles 146 into the inner orbit of the vortex streaming and further propel the particles 146 towards the center 144C. Although the particle displacement has a small oscillation along the radial direction due to the continuous stretching and compressing of the droplet 144, the overall impact is to push the particles 146 inward. Thus, as this inward pushing effect accumulates, nanoparticles 146 can be concentrated to the droplet center 144C.
[0071] Differential Concentration of Nanoparticles Via Acoustofluidic Centrifuge
[0072] For particles with diameters smaller than approximately 1μm in a droplet, the drag force generated by both acoustic streaming (tangential direction) and spinning-enhanced secondary-flow (radial direction) can play a significant role in driving the particles to move along the fluid streamlines. The particle trajectory and end position in a sessile droplet is mainly related to two factors: (1) the ratio between the attenuation length of the acoustic wave (L.sub.s=ρ.sub.sc.sub.sλ.sub.s/ρ.sub.fc.sub.f) and the droplet radius (r.sub.d), where ρ.sub.s, ρ.sub.f, c.sub.s, c.sub.f, λ.sub.s are the density, acoustic velocity of the substrate and fluid, and the wavelength of the SAW in the substrate, respectively; (2) the ratio between the particle size and the acoustic wavelength in the fluid (κ=k.sub.fa.sub.p), where k.sub.f is the wave number in the fluid, and ap is the radius of the particle. When the wave attenuation length is larger than the droplet radius (L.sub.s>r.sub.d), and the particle size is small compared to the wavelength in the fluid (κ<1), particles inside the vortex streaming field can move and concentrate to the center. When dealing with nanoparticles, the aforementioned secondary-flow induced by spinning motion can have a drag force component in the radial direction and can dominate the concentration that can gradually bring the particles inward. Both by numerical and experimental efforts, it was shown that nanoparticles 146 can be rapidly (within approximately one minute or less) concentrated in the spinning droplet 144, with particle sizes down to about 28 nm in diameter, as shown in
[0073] Rapid concentration of nanoparticles can enable various applications such as fluorescence based biospecimen detection. For instance, DNA molecules can be detected in acoustofluidic centrifuge systems provided for herein, or otherwise derivable from the present disclosures. This can be done, for example, with a fluorescent dye called SYTOX that enhances its fluorescence more than 500-fold upon intercalation with the DNA. A flow chart 200 provided for in
[0074]
[0075] In addition to the rapid enrichment of nanoparticles, the system is capable of differentially concentrating nanoparticles of varying sizes. The interplay of the acoustic parameters (e.g., frequency and amplitude) and the droplet dimensions can generate different particle trajectories for different sized particles within the same droplet. As the combined radial force continuously pushes the particles towards the droplet center, different particles can share the same final equilibrium position (center region) while the time scale and migration speed for reaching this position can be different. Specifically, when nanoparticles with two different sizes are contained within a spinning droplet, the larger particles can experience higher acoustic radiation forces and drag forces, and smaller effects from Brownian motion. Numerical simulations were conducted to show that nanoparticles can be differentially concentrated with a small size difference (e.g., the separation of 28 nm diameter particles 247 and 100 nm diameter particles 246, as shown in
[0076] Dual-Droplet Acoustofluidic Centrifuge
[0077] Although nanoparticles of different sizes can be differentially concentrated within a single droplet by concentrating the larger particles to the middle, this single-droplet acoustofluidic centrifuge device can impact the purity of the target nanoparticles with distinctive sizes because differential concentration and retrieval of the subsets of nanoparticles is conducted within the same droplet. To address this concern, multi-droplet based acoustofluidic centrifuge systems and devices, such as a dual-droplet based acoustofluidic centrifuge system or device, is provided that is practical, for example, for nanoparticle separation applications.
[0078] Two acoustic beams can be generated with a single IDT, e.g., IDT 322 or 332, by utilizing a frequency shift keying to switch between two different excitation frequencies and excitation locations along a width of the IDT. More particularly, the centrifuge 310 provides a dual droplet functionality that can be achieved using binary frequency shift keying, which involves sequentially shifting between two frequencies for each IDT. With a high shifting frequency, the two droplets 344a, 344b can be rotated simultaneously.
[0079]
[0080] More particularly, for this demonstration, the two droplets 344a, 344b with different volumes can be used (e.g., 4.0 μL and 5.0 μL), which correspond to average rotational speeds of approximately 6,867±160 rpm and approximately 5,674±98 rpm, respectively. Different sized particles 346 (e.g., the two different particles sizes 346, 347 illustrated in
[0081] After separating the two different sized particle distributions using this dual droplet system 310, the separation and transport performance can be characterized by measuring the particle size distribution in both droplets 344a, 344b using a Zetasizer. As shown in
[0082]
[0083] The dual-droplet-based acoustofluidic centrifuge system can also be used to perform extracellular vesicle subpopulation separation. One non-limiting example of such extracellular vesicles includes exosomes, which are nanoscale extracellular vesicles (approximately in the range of about 30 nm to about 150 nm) that carry molecular cargo from their cell of origin. They have emerged as a potentially powerful vector for biomedical research, biomarker discovery, disease diagnostics, and health monitoring. It has been reported that exosomes have three distinct subpopulations (i.e., large exosomes, approximately in the range of about 90 nm to about 150 nm, small exosomes, approximately in the range of about 60 nm to about 80 nm, and exomeres, approximately 35 nm), which exhibit different physical and biological properties. Among these three subpopulations, exomeres, a non-membranous nanoparticle, have the smallest size and distinctive cargos compared to the other two subpopulations. While the recent discovery of exosome subpopulations has excited researchers due to their potential to revolutionize the field of non-invasive diagnostics, exosome subpopulations have yet to be utilized in clinical assays; this is largely due to the difficulties associated with separation of the nano-sized exosome subpopulations.
[0084] Because the dual-droplet acoustofluidic centrifuge system, and related methods of using the same, can concentrate and separate nanoparticles with a fine size difference, one non-limiting use for the disclosed systems and methods is to perform exosome subpopulation separation. One example of exosome subpopulation separating is illustrated in
[0085] The samples 546, 547 can be measured using a nanoparticle tracking analysis (NTA) system. In the original sample, there can be multiple peaks within the size range of the exosome subpopulations beneath the 150 nm size range. After the separation and transport process, however, there can be two major size distribution peaks that remain in the droplet 554b, both the larger particles 546 and the smaller particles 547. Meanwhile, in the droplet 554a, the majority of the particles are the smaller particles 547, which can measure below 50 nm. The structures within the three different samples (original, right droplet 554b after separation, left droplet 554a after separation) were TEM imaged, which supported the results of the NTA measurements. The images showed a larger percentage of exomeres in the left droplet 554a, again supporting the NTA measurements. These results demonstrate that this dual-droplet acoustofluidic centrifuge system 510, and other such systems disclosed herein (e.g., systems 310, 410) or otherwise derivable from the present disclosure, can be used to rapidly fractionalize exosome samples into different subpopulations. It is worth noting that the peaks of the particle size distribution from NTA measurement can have small shifts before and after separation. This phenomenon may be due, at least in part, to the blocking effect of the intense light scattering of large particles as the size of the particle distributions are different in pre- and post-separation sample. This insufficient polydisperse sample resolution, although difficult to avoid, may be reduced by minimizing the large nanoparticle effect from particles with size ranges out of a realm of interest.
[0086]
SUMMARY
[0087] The acoustofluidic centrifuges, and related methods, provided for herein can use SAWs to push a droplet out of its equilibrium shape and forces it to spin on its center vertical axis when the fluid boundary is partially confined. This rotational velocity can be independent of the acoustic parameters, but can be closely related to the radius of the droplet. This can allow the spin rate to be tuned, for example by either changing the volume of the droplet or the size of the PDMS containment ring. Meanwhile, this spin motion can also be extended to different organic liquids that are often used for cell/nanoparticle handling (e.g., PBS, cell culture medium, or Bovine serum albumin). In a spinning droplet, Stokes drift rotates and forms a closed path creating a helical trajectory that particles inside the droplet will follow towards the droplet center. With the acoustofluidic centrifuge system, high-frequency acoustic waves will propagate into the fluid and generate acoustic streaming and acoustic radiation forces which both act on the particles and push the particles towards the center of the droplet, as opposed to along specific orbits. The spinning of the droplet not only enables the helical trajectory, but also increases the speed of particle concentration by a factor approximately in the range of about 10.sup.2 time to about 10.sup.3 times by significantly enhancing the streaming velocity along with the secondary-flow induced radial drag force for nanoparticles. All of these phenomena can form an interesting and functional system that can bridge the gap between acoustofluidics and nanoscale bioparticle manipulation.
[0088] Based on experiments and numerical simulations, it has been shown that particles with sizes ranging from several nanometers (i.e., DNA molecules) to micrometers can be rapidly concentrated in acoustofluidic centrifuge systems provided for herein. Furthermore, a practical method to separate nanoparticles with different size distributions was demonstrated using a dual-droplet acoustofluidic centrifuge system. This dual-droplet system can be further expanded to a multi-stage nanoparticle separation or enrichment system in which multiple (greater than 2) groups of nanoparticles can be separated into different outlets in one device. Many bioparticles have sizes that range in the nanoscale or submicron (e.g., DNA, exosomes, bacteria, proteins, or viruses), and the enrichment and separation of these bioparticles is of great importance in biology, chemistry, and medicine. However, the current methods for nanoparticle enrichment and separation, such as ultracentrifugation, often require a large sample volume (typically greater than about 10 mL) and a long processing time (typically at least several hours to several days) with relatively low yield (approximately in the range of about 5% to about 50%) and purity (approximately in the range of about 23% to about 70%). By combining acoustic waves and fluid motion, the disclosed acoustofluidic centrifuges possess advantages in both of these regards. The devices can flexibly handle smaller sample volumes ranging from nanoliters to microliters, and processing times (approximately one minute or less) are much shorter than currently available nanoparticle concentration/separation mechanisms. Further, the systems can sustain a relatively high yield and purity (approximately greater than 80%). Furthermore, it is an open microfluidic device with a simple fabrication process. This allows for easy accessibility to the droplet via a pipette, eliminating the need for external pumps, valves, or other flow control devices.
[0089] The effects of different factors involved in the operation of the disclosed acoustofluidic centrifuges have been explored to better understand and improve the device performance. For example, if the streaming within the droplet is too strong, it may induce the re-dispersion of concentrated particles, especially in smaller droplets, which have a high rotational velocity. On the other hand, if the streaming is too weak, it may cause insufficient enrichment. Thus, device-operating parameters should generally be optimized for particular applications. In the disclosed acoustofluidic centrifuges, many factors should be considered for optimizing nanoparticle motion within the rotational vortex (e.g., Brownian motion, the extra shear rate, and the secondary-flow drag force in the spinning droplet). In this regard, numerical simulations were performed to investigate the interaction between these factors. This simulation model is presented as an efficient tool to estimate the proper streaming velocity and radial force that is needed to concentrate/separate nanoparticles with different size distributions, and the trajectories of different sized particles could be simulated and traced as well. Moreover, the numerical simulation can be used to isolate the effects of droplet spinning motion from acoustic streaming, which is difficult to observe during experimentation because the particle motion within the droplet is an intertwined effect combining these two motions.
[0090] In summary, the present disclosure provides for an acoustofluidic centrifuge platform (both systems and methods) that can efficiently and rapidly enrich or separate nanoscale bioparticles. This platform can significantly simplify and speed up sample processing, detection, and reagent reactions in various applications such as point-of-care diagnostics, bioassays, and liquid biopsies.
[0091] Additional details about some of the components disclosed herein are provided for in the following listing of materials and methods. The identification of particular materials, parameters, etc. are by no means limiting, but provide only a non-limiting embodiment(s) of components of the acoustofluidic centrifuge system provided for herein.
[0092] Device design, fabrication and operation. The slanted IDTs (5-nm Cr and 50-nm Au) can be fabricated on a 128° Y-cut lithium niobite (LiNbO.sub.3) wafer (Precision Micro-Optics, USA) using standard photo lithography followed by electron beam evaporation and a lift-off process. Silver epoxy (MG Chemicals, USA) can be used to connect wires to the IDT electrodes. The microchannels can be fabricated by standard soft-lithography and a mold-replica procedure. The containment boundaries, e.g., PDMS rings, can be cut to the desired size from a 0.55 mm-thick PDMS film using punches (Robbins Instruments, USA). The PDMS parts and LiNbO.sub.3 substrate can be bonded together after approximately three minutes of treatment in an oxygen plasma cleaner (Harrick Plasma, USA). Three slanted IDT configurations used in the setup corresponded to different droplet volume ranges (approximately 10 μL, approximately 1 μL, and approximately 100 nL). The first has an electrode finger width and spacing gap which decreases linearly from about 140 μm to about 70 μm, corresponding to SAW frequencies from about 7 MHz to about 14 MHz. The second has finger widths from about 75 μm to about 35 μm, corresponding to about 13 MHz to about 28 MHz. The third has widths from about 32.5 μm to about 17.5 μm, corresponding to about 30 MHz to about 56 MHz. Two function generators (DG 3012C, Teletronics Technology Corporation, USA) and two amplifiers (25A250A, Amplifier Research, USA) can be used to activate a pair of slanted IDTs and to generate SAWs. For the acoustofluidic centrifuge system with dual spinning droplets, the microchannel can be designed with a width of about 200 μm and a height of about 100 μm.
[0093] Droplet generation and sample preparation. The micro droplets can be generated using a pipette and the nano droplets can be generated using 1 μL and 0.5 micro-volume liquid syringes (SEG, AU). 10 μm, 5 μm, 1 μm, 970 nm, 530 nm, 100 nm, 51 nm, and 28 nm diameter polystyrene particles (Sigma-Aldrich, USA, Bangs Laboratories, USA) with different fluorescence tags can be utilized in the experiments. Deoxyribonucleic acid chains from herring sperm in solution (Sigma-Aldrich, USA) can be tested after staining with SYTOX orange dye (Thermo Fisher, USA).
[0094] Small EV preparation procedure. The exosome sample can be isolated from human plasma (Zen-Bio, USA) with a concentration of about 10.sup.6 /mL using differential ultracentrifugation. One non-limiting embodiment of the general procedure can be: [0095] 1. Thaw plasma in an approximately 37° C. water bath until all, or substantially all, the crystals of ice in the tubes have disappeared. After thawing is complete, mix the samples by gently vortexing for about 10 seconds. [0096] 2. Centrifuge about 45 mL of plasma at about 3,000 g for about 10 minutes at approximately 8° C. [0097] 3. Dilute cleared plasma with PBS and spin at about 10,000 g for about 30 minutes at approximately 8° C. Re-suspend and collect 10K pellet in about 1.0 ml PBS per tube. [0098] 4. Wash re-suspended pellets using an approximately 30 minute spin at about 10,000 g at approximately 8° C. [0099] 5. Spin supernatant at about 103,745 g for about 4.5 hours at approximately 8° C. Re-suspend and collect 100K pellet in about 0.5 ml PBS per tube. [0100] 6. Combine re-suspended plasma 100K pellets (about 2 ml total), add about 4 ml PBS, and place on top of a 3-part OptiPrep cushion (about 2 ml 50%/about 2 ml 30%/about 2 ml 10%). Centrifuge at about 178,000 g, about 2 hours at approximately 4° C. Collect about 1 ml of the 30%/10% interface (p=about 1.06 g/ml to about 1.16 g/ml). [0101] 7. Dilute OP about 30%/about 10% interface to about 12 ml with PBS and spin at about 120,000 g for about 2 hours at approximately 8° C. [0102] 8. Re-suspend pellets in about 200 μl PBS and analyze using NTA for confirmation.
[0103] Image acquisition and analysis. The microscope images and videos can be acquired using an inverted microscope (TE2000-U, Nikon, Japan) equipped with a fast camera (Photron, Japan). The droplet spinning motion can be captured with a frame rate of about 3,000 fps and analyzed using ImageJ (NIH, MD, USA) and/or MATLAB R2016b (MathWorks, USA). The side view of the droplet spinning can be captured using the Slow Mo mode of a cell phone with a frame rate of about 240 fps. The post-processed exosome sample can be collected and visualized using transmission electron microscopy (TEM, FEI Tecnai G.sup.2 Twin, FEI Company, USA) and a negative staining method. The nanoparticle size distribution and concentration pre- and post-processing can be analyzed using the Malvern Zetasizer (Malvern Instruments, UK) and nanoparticle tracking analysis (NTA) with a NanoSight LM10 apparatus (Amesbury, UK).
[0104] The systems and methods described herein can be implemented in hardware, software, firmware, or combinations of hardware, software and/or firmware. In some examples, the systems and methods described in this specification may be implemented using a non-transitory computer readable medium storing computer executable instructions that when executed by one or more processors of a computer cause the computer to perform operations. Computer readable media suitable for implementing the systems and methods described in this specification include non-transitory computer-readable media, such as disk memory devices, chip memory devices, programmable logic devices, random access memory (RAM), read only memory (ROM), optical read/write memory, cache memory, magnetic read/write memory, flash memory, and application-specific integrated circuits. In addition, a computer readable medium that implements a system or method described in this specification may be located on a single device or computing platform or may be distributed across multiple devices or computing platforms.
[0105] One skilled in the art will readily appreciate that the present disclosure is well adapted to carry out the objects and obtain the ends and advantages mentioned, as well as those inherent therein. Further, one skilled in the art will appreciate further features and advantages of the disclosure based on the above-described embodiments. Accordingly, the disclosure is not to be limited by what has been particularly shown and described, except as indicated by the appended claims.
[0106] No admission is made that any reference, including any non-patent or patent document cited in this specification, constitutes prior art. In particular, it will be understood that, unless otherwise stated, reference to any document herein does not constitute an admission that any of these documents forms part of the common general knowledge in the art in the United States or in any other country. Any discussion of the references states what their authors assert, and the applicant reserves the right to challenge the accuracy and pertinence of any of the documents cited herein. All references cited herein are fully incorporated by reference, unless explicitly indicated otherwise. The present disclosure shall control in the event there are any disparities between any definitions and/or description found in the cited references.