METHOD / DEVICE FOR TARGET COMPOUND PURIFICATION
20220381750 · 2022-12-01
Assignee
Inventors
Cpc classification
C12N7/00
CHEMISTRY; METALLURGY
G01R33/448
PHYSICS
C12N2750/14151
CHEMISTRY; METALLURGY
G01N30/88
PHYSICS
G01N24/085
PHYSICS
International classification
C12N7/00
CHEMISTRY; METALLURGY
G01N30/88
PHYSICS
Abstract
The present invention relates to a separation method comprising: i) providing an aqueous solution comprising a target compound; ii) applying a separation step to the aqueous solution, thereby providing a plurality of fractions of the aqueous solution: iii) determining a concentration parameter indicating a concentration of the target compound in at least part of the fractions; iv) determining a nuclear magnetic resonance (NMR) parameter by applying an NMR measurement to the fractions, the NMR parameter indicating a nuclear magnetic spin relaxation in said at least part of the fractions; and v) determining a target parameter of said at least part of the fractions based on the concentration parameter and the nuclear magnetic resonance parameter. The present invention further relates to separation systems, uses, preparations, and methods related thereto.
Claims
1. A separation method comprising: i) providing an aqueous solution comprising a target compound; ii) applying a separation step to the aqueous solution, thereby providing a plurality of fractions of the aqueous solution; iii) determining a concentration parameter indicating a concentration of the target compound in at least part of the fractions; iv) determining a nuclear magnetic resonance (NMR) parameter indicative of a transverse nuclear magnetic spin relaxation of water by applying an NMR measurement to the fractions; and v) determining a target parameter of said at least part of the fractions based on the concentration parameter and the NMR parameter.
2. The method of claim 1, wherein the NMR parameter is indicative of a transverse nuclear magnetic spin relaxation of protons in water.
3. The method of claim 1, wherein the NMR parameter comprises at least one of a transverse nuclear magnetic spin relaxation time T.sub.2 and a transverse nuclear magnetic spin relaxation rate R.sub.2.
4. The method of claim 1, wherein the concentration parameter is directly proportional to the concentration of the target compound.
5. The method of claim 1, wherein the concentration parameter is not an NMR parameter indicative of a transverse nuclear magnetic spin relaxation of water.
6. The method of claim 1, wherein the target parameter is directly proportional to the concentration parameter and to the NMR parameter being the transverse relaxation time (T.sub.2).
7. The method of claim 1, wherein the target parameter is directly proportional to the product of the concentration parameter and the NMR parameter being the transverse relaxation time (T.sub.2).
8. The method of claim 1, further comprising step vi) identifying, based on the target parameter, fractions comprising the target compound at a desired purity.
9. The method of claim 8, further comprising step vii) combining at least two of the fractions comprising the target compound at a desired purity.
10. The method of claim 1, wherein the separation step in step ii) comprises a chromatographic separation, wherein the fractions are fractions of an eluate of the chromatographic separation.
11. The method of claim 1, wherein the separation step in step ii) comprises size-exclusion chromatography or ion exchange chromatography.
12. The method of claim 1, wherein the method is a continuous in-line method and/or wherein, in step ii), the fractions are generated as a continuous stream of liquid.
13. The method of claim 1, wherein the target compound comprises, in an embodiment is, a compound selected from the group consisting of (i) a polypeptide, (ii) a polynucleotide, (iii) a complex of one of (i) or (ii); and (iv) a conjugate of one of (i) to (iii).
14. The method of claim 1, wherein the target compound comprises, in an embodiment is, a polypeptide.
15. The method of claim 1, wherein the target compound comprises, in an embodiment is, a non-aggregated polypeptide.
16. The method of claim 1, wherein said target compound is a virus or a virus-like particle.
17. The method of claim 1, wherein said concentration parameter is determined in a direct photometric assay.
18. The method of claim 1, wherein the concentration parameter is the absorption, extinction, or fluorescence of the target compound.
19. A separation system, comprising: a) a separation device configured for applying a separation step to an aqueous solution comprising a target compound, thereby providing a plurality of fractions of the aqueous solution; b) a concentration determining device configured for determining a concentration parameter indicating a concentration of the target compound in at least part of the fractions; c) a nuclear magnetic resonance (NMR) measurement device configured for determining an NMR parameter indicative of a transverse nuclear magnetic spin relaxation of water by applying an NMR measurement to the fractions, and d) an evaluation device configured for determining a target parameter of said at least part of the fractions based on the concentration parameter and the NMR parameter.
20. The system of claim 19, the system further comprising: e) a liquid distribution element for combining at least two of the fractions comprising the target compound and/or an output device outputting the values of the target parameter determined in step d).
21. (canceled)
22. A method of production of a target compound, in particular a polypeptide, comprising the steps of the method according to claim 1.
23. A preparation of a target compound produced or producible according to the method according to claim 1.
24. A method for increasing concentration of a target compound in a solution by diafiltration, comprising A) determining a first gradient of a nuclear magnetic resonance parameter (NMR parameter) indicative of a transverse nuclear magnetic spin relaxation of water over time in said solution or in a fraction thereof, B) determining a second gradient of said NMR parameter over time in said solution or in a fraction thereof, and C) at least temporarily decreasing diafiltration rate and/or increasing stirring rate in case the value of said second gradient of said NMR parameter deviates at least 10%, from the value of said first gradient of said NMR parameter.
Description
SHORT DESCRIPTION OF THE FIGURES
[0199] Further optional features and embodiments will be disclosed in more detail in the subsequent description of embodiments, preferably in conjunction with the dependent claims. Therein, the respective optional features may be realized in an isolated fashion as well as in any arbitrary feasible combination, as the skilled person will realize. The scope of the invention is not restricted by the preferred embodiments. The embodiments are schematically depicted in the Figures.
[0200] Therein, identical reference numbers in these Figures refer to identical or functionally comparable elements.
[0201] In the Figures:
[0202]
[0203]
[0204]
[0205]
[0206]
[0207]
[0208]
DETAILED DESCRIPTION OF THE EMBODIMENTS
Example 1: Materials and Methods
[0209] Antibody Like Proteins
[0210] An overview of the antibody Like Proteins (ALPs) used in the Examples is given in
[0211] NMR
[0212] Transverse relaxation rates (R2) or times (T2) were recorded with a Bruker minispec mq20 spectrometer (20 MHz; Bruker BioSpin GmbH, Rheinstetten, Germany). The spectrometer was equipped with a 0.47 T magnet and a H20-10-25AVGX4 probe. At least 4 acquisitions were measured for each sample with sample volumes of 900 μl at 20° C. To determine T2 or R2, signal decay was followed for at least 5 sec.
[0213] Preparation of Protein Load Solutions
[0214] The proteins used were expressed from stably transfected CHO cells. Fermentation supernatants were applied to MabSelect SuRe columns (GE Healthcare Europe GmbH, Freiburg, Germany) and eluted with acidic buffer solutions with a pH<5. After elution the protein pool was adjusted to a pi of 5.0 to 5.5 by adding adequate amounts of 1 M Tris solution.
[0215] Chromatography
[0216] SEC
[0217] Prior to size exclusion chromatographies the concentration of the protein A pools was increased to >20 mg/mi by ultrafiltration using an Amicon stirring cell with ultrafiltration discs having a 10 kDa or 30 kDa cut-off (Merck KGaA, Darmstadt, Germany). Size exclusion chromatography was done by loading 30 mg to 180 mg of protein A purified protein samples to a Superdex 20W prep grade column (60 cm column height, 1.6 cm diameter; GE Healthcare Europe GmbH, Freiburg. Germany). Chromatography runs were performed with a flow rate of 1.6 ml/min in 20 mM His/His-HCL, 140 mM NaCl, pH 5.5. During elution the absorption at 280 nm was recorded and fractions were collected.
[0218] CEX
[0219] For cation exchange chromatography (CEX) the proteins were loaded on 10 ml Poros XS columns (20 cm column height, 0.8 cm diameter; Thermo Fisher, Scientific, Waltham, Mass., USA) with a load density between 25 mg/ml and 30 mg/ml.
[0220] For conductivity gradient elution, the column was equilibrated with 40 mM acetate pH 5.5. Then the protein A purified protein solution was loaded with 2.0 ml/min and the column was washed with 3 column volumes (CV) of equilibration buffer. For elution of the bound proteins an acetate gradient up 500 or 750 mM within 20 or 15 CV, respectively, and a flow rate of 2.5 ml/min was used at pH 5.5 or 6.5. During elution adsorption at 280 nm was recorded and fractions were collected.
[0221] For pH gradient elution, the column was equilibrated with 20 mM citrate, 20 mM sodium phosphate, 20 mM Tris, pH 5.0 and a NaCl concentration between 50 mM and 100 mM. Then the protein A purified protein solution was loaded with 2.0 ml/min and the column washed with 5 CV equilibration buffer. For elution of the bound proteins a pH gradient from 5.0 to 8.5 within 20 to CV and a flow rate of 2.5 ml/min was used. During elution adsorption at 280 nm was recorded and eluate fractions were collected.
[0222] In addition, buffer control runs were performed for conductivity and pH gradient elutions. For these runs, the above described procedures were used, but no protein loaded to the column.
[0223] Analytical SEC
[0224] Pools and fractions of the chromatographies were analyzed by analytical SEC. To that end, approximately 25 μg (but not more than 100 μl) of protein were injected on a TSKgel UP-SW3000 column (Tosoh Bioscience, Griesheim. Germany) and subjected to isocratic chromatography in 200 mM potassium phosphate, 250 mM potassium chloride, pH 6.2 with a flow rate of 0.25 ml/min. Purities were calculated based on absorption at 280 nm with the Software Chromeleon 7 (Thermo Fisher, Scientific, Waltham, Mass., USA).
[0225] UF
[0226] Ultrafiltration was done with a manual benchtop device with a 400 ml vessel and a 30 kDa Sartorius (Sartorius A G, Göttingen, Germany) membrane. The device was regenerated with 0.5 M NaOH, flushed with water and equilibrated with the corresponding buffer until pH and conductivity of the equilibration buffer was constant. Subsequently, the equilibration buffer was exchanged by the protein solution. Ultrafiltration was run under pressure control of 1-1.2 bar.
[0227] Samples were taken after defined volume reductions. Protein concentration. SE-HPLC and wNMR T2 were determined for each sample. Two sets of experiments were run. One at RT and one under artificial stress conditions (50° C.). Artificial stress was applied to induce rapid HMW formation at a specific concentration.
Example 2
[0228] As shown in
Example 3
[0229]
Example 4
[0230] Four different Antibody Like Proteins (ALPs,
TABLE-US-00001 TABLE 1 Compositions of the protein solutions applied to the indicated LC columns; ALP: Antibody Like Protein; HMW: High molecular weight (aggregates), LMW: low molecular weight (degradation products), na: not applicable/not determined, SEC: size exclusion chromatography. Target compound Column HMW Dimer Monomer LMW ALP1 SEC 15.6 na 81.4 2.93 ALP1 Poros XS 10.2 na 85.0 4.81 ALP2 SEC 9.53 na 90.0 0.44 ALP3 Poros XS 5.58 na 93.1 1.34 ALP4 SEC 12.6 19.3 68.0 na ALP4 Poros XS 10.5 21.75 67.7 na
TABLE-US-00002 TABLE 2 Compositions of the protein solutions applied to the indicated LC steps after pooling according to c[protein] determination (UV measurement) alone (c[protein]), according to normalized T2 alone (normalized T2), and according to the normalized product of T2 and c[protein] (T2 and c[protein]): HMW: high molecular weight (aggregates), LMW: low molecular weight (degradation products), na: not applicable/not determined, SEC: size exclusion chromatography. c[protein] normalized T2 T2 and c[protein] Target Mono- Mono- Mono- com- Col- Yield HMW Dimer mer LMW Yield HMW Dimer mer LMW Yield HMW Dimer mer LMW pound umn Gradient [%] [%] [%] [%] [%] [%] [%] [%] [%] [%] [%] [%] [%] [%] [%] ALP1 Poros pH 84 4.7 na 93 2.2 69 3.5 na 95 1 43 2.1 na 97 1.0 XS ALP2 SEC isocratic 84 1.0 na 99 1.0 ALP3 Poros pH 72 4.0 na 95 1.4 69 2.4 na 96 1.4 43 1.3 na 98 1.0 XS 61 1.4 2.6 96 na ALP4 SEC isocratic ALP4 Poros acetate 82 7.0 21 72 na 79 7.1 21 72 na 62 6.1 17 77 na XS ALP4 Poros pH 88 7.0 21. 72 na 81 5.6 21 73 na 64 2.5 14 83 na XS
Example 4
[0231] Protein solutions at various concentrations were artificially stressed to induce aggregation, or not, and wNMR-T2 values were measured. As shown in
Example 5: Filled and Empty AAV Capsids
[0232] Materials and Methods
[0233] AAV Particles
[0234] DNA-loaded AAV particles as well as empty AAV particles of different serotypes were purchased from Virovek, Hayward, Calif., United States of America. For filled AAV particles, the concentration of vg/mL (virus genomes per mL) equals the concentration of vp/mL (virus particles per mL) as one genome is packaged in one particle; for empty AAV particles, the number of vp/mL can be determined e.g. by comparing the amount of capsid protein(s) to the amount of capsid protein(s) in a preparation of filled AAV particles with a known concentration in vg/mL. The DNA is of the DNA-loaded AAV particles comprised an expression cassette for green fluorescent protein with a CMV promoter (CMV-GFP):
[0235] AAV8-empty (Lot 19-564E); AAV8-CMV-GFP (Lot 18-737) in 1×PBS buffer containing 0.001% pluronic F-68, and 0.22 μm filter sterilized.
[0236] AAV2-empty (Lot 19-604E)/AAV2-CMV-GFP (Lot 17-600) in 1×PBS buffer containing 0.001% pluronic F-68, 100 mM sodium citrate and 0.22 μm filter sterilized.
[0237] AAV6-empty (Lot 19-540E)/AAV2-CMV-GFP (Lot 19-718) in 1×PBS buffer containing 0.001% pluronic F-68, 100 mM sodium citrate and 0.22 μm filter sterilized.
[0238] NMR
[0239] Transverse relaxation rates (R.sub.2) or times (T.sub.2) were recorded as specified herein above in Example 1.
[0240] Preparation of AAV Samples
[0241] The samples were generated by mixing full and empty AAV2, AAV6 and AAV8 particles, respectively, having the same concentration (2*10.sup.13 vg/ml) dissolved in the same aqueous solution comprising 1×PBS buffer containing 0.001% (w/v) pluronic F-68 (for AAV8) and containing 0.001% (w/v) Pluronic F-68 as well as, for AAV2 and AAV6, 100 mM sodium citrate at different ratios. Samples were measured without further longtime storage e.g. <0° C.
Example 5.1
[0242] Determination of the Transverse Relaxation Times for Different Ratios of DNA-Loaded and Empty AAV Particles
[0243] DNA-loaded AAV particles and empty AAV particles were mixed in aqueous solution (AAV2 and AAV6: 1×PBS buffer containing 0.001% a (w/v) pluronic F-68, 100 mM sodium citrate; AAV8 same buffer without sodium citrate) to result in different full/empty ratios spanning the range from 0% to 100% DNA-loaded AAV particle. This has been done for AAV particles of the to serotypes 2, 6 and 8. For the individual samples, the transverse relaxation time, (T.sub.2) were recorded as outlined in the Materials and Methods section above. The results are presented in the following Tables.
TABLE-US-00003 TABLE 3 T.sub.2 values for differently DNA-loaded AAV2 particle samples. concentration fraction transverse relaxation time [ms] ratio of DNA-loaded AAV2 standard full/empty particles experiment 1 experiment 2 average deviation 0:100 0 vg/mL 0.00 1559.9 1566.9 1563.4 3.5 25:75 0.5 * 10.sup.13 vg/mL 0.25 1605.8 1568.0 1586.9 18.9 50:50 1 * 10.sup.13 vg/mL 0.5 1627.0 1602.4 1614.7 12.3 75:25 1.5 * 10.sup.13 vg/mL 0.75 1677.6 1662.4 1670.0 7.6 100:0 2 * 10.sup.13 vg/mL 1.00 1750.6 1770.3 1760.5 9.9
TABLE-US-00004 TABLE 4 T.sub.2 values for differently DNA-loaded AAV6 particle samples. concentration fraction transverse relaxation time [ms] ratio of DNA-loaded AAV6 standard full/empty particles experiment 1 experiment 2 average deviation 0:100 0 vg/mL 0.00 1629.9 1614.2 1622.1 7.9 25:75 0.5 * 10.sup.13 vg/mL 0.25 1664.6 1629.1 1646.9 17.8 50:50 1 * 10.sup.13 vg/mL 0.5 1700.7 1073.3 1687.3 13.5 75:25 1.5 * 10.sup.13 vg/mL 0.75 1688.5 1688.5 1688.5 0.0 100:0 2 * 10.sup.13 vg/mL 1.00 1757.5 1786.1 1771.8 14.3 The value for the 75:25 ratio was excluded for the fitting calculation due to being deemed to be an experimental error.
TABLE-US-00005 TABLE 5 T.sub.2 values for differently DNA-loaded AAV8 particle samples. transverse ratio concentration fraction relaxation time full/empty of DNA-loaded AAV8 particles [ms] 0:100 .sup. 0 vg/mL 0.00 1704.2 25:75 0.5*10.sup.13 vg/mL 0.25 1668.0 50:50 1*10.sup.13 vg/mL 0.5 1635.6 75:25 1.5*10.sup.13 vg/mL 0.75 1608.9 100:0 2*10.sup.13 vg/mL 1.00 1497.3
[0244] The obtained transverse relaxation times were fitted using linear and second order polynomial functions. The results are presented in the following Table 6.
TABLE-US-00006 TABLE 6 Fitting results. For the serotype 6 the fitting is shown including (in brackets) and excluding the data for the 75:25 ratio. AAV serotype function R.sup.2 value linear fitting 2 1.9088*x + 1543.7 0.9208 6 1.5298*x + 1615.1 0.9905 (1.3646*x + 1615.1) (0.8984) 8 −1.8916*x + 1717.4 0.9026 2.sup.nd order polynomial fitting 2 0.0184*x.sup.2 + 0.0642*x + 1566.7 0.996 6 0.0047*x.sup.2 + 1.0479*x + 1620.9 0.9987 (0.0089*x.sup.2 + 0.4749*x + 1626.2) (0.9318) 8 −0.0166*x.sup.2 − 0.2333*x + 1696.7 0.9633
[0245]
[0246]
[0247]
LITERATURE
[0248] Feng et al. (2015), Chem. Commun. 51: 6804 [0249] Hills et al. (1989), Molecular Physics, 67(4):903-918) [0250] Metz and Mäder (2008), International Journal or Pharmaceutics 364:170-175 [0251] Shigemitsu et al. (2016), Analytical Biochemistry 498:59-67 [0252] Taraban et al. (2015), Journal of Pharmaceutical Sciences 104:4132-4141 [0253] Taraban et al. (2017), Analytical Chemistry 89:5494-5502 [0254] Taraban et al. (2019), 7th Annual PANIC Conference, Poster presentation P35: “Water Flow-NMR—A Prospective Contact-Free In-Line Analytical Tool for Continuous Biomanufacturing” [0255] Taraban et al. (2019). Anal Chem 91(6):4107 [0256] WO 2012/015912A1 [0257] WO 2014/169229 A1 [0258] WO 2015/118016 A1 [0259] WO 2018/102681 A1 [0260] WO 2018/184964 A1 [0261] WO 2019/016154A1
LIST OF REFERENCE NUMBERS
[0262] 110 separation device [0263] 112 concentration determining device [0264] 114 NMR measurement device [0265] 116 evaluation device [0266] 118 sample (aqueous solution)/mobile phase inlet [0267] 120 liquid distribution element [0268] 122 fractions