Free-flow electrophoresis method for separating analytes
10067089 ยท 2018-09-04
Assignee
Inventors
Cpc classification
International classification
Abstract
The present invention is related to a free-flow electrophoresis method for separating at least one analyte of interest from a mixture of analytes, wherein the method uses a separation medium comprising two or more individual separation media, wherein the two or more individual separation media differ in their pH value, and wherein each of the two or more individual separation media comprise at least one anion of at least one acid and at least one cation of at least one base, wherein the at least one acid is the same in each of the two or more individual separation media and the at least one base is the same in each of the two or more individual separation media.
Claims
1. A free-flow electrophoresis method for separating at least one analyte of interest from a mixture of analytes, wherein the method comprises flowing a separation medium through a separation chamber in a flow direction; applying an electric field in the separation medium by an anode and a cathode, wherein the anode and the cathode are located at a distance from each other and the separation medium flows between the anode and the cathode, and applying the mixture of analytes to the separation medium, whereupon the at least one analyte of interest is separated from the mixture of analytes, or applying the mixture of analytes to the separation medium, and applying an electric field in the separation medium by an anode and a cathode, wherein the anode and the cathode are located at a distance from each other and the separation medium flows between the anode and the cathode, whereupon the at least one analyte of interest is separated from the mixture of analytes; collecting fractions of the separation medium with at least one fraction comprising the at least one analyte of interest separated from the mixture of analytes; characterized in that the separation medium comprises two or more individual separation media, wherein the two or more individual separation media differ in their pH value, and wherein each of the two or more individual separation media comprise at least one anion of at least one acid and at least one cation of at least one base, wherein the at least one acid is the same in each of the two or more individual separation media and the at least one base is the same in each of the two or more individual separation media; the at least one anion of the at least one acid is the same in each of the two or more individual separation media and the at least one cation of the at least one base is the same in each of the two or more individual separation media; and if the analyte of interest has a pI of >7, the analyte of interest is separated at an optimum pH range pH.sub.opt, wherein pH.sub.opt is determined as follows:
pI0.6<pH.sub.optpI or if the analyte of interest has a pI of <7, the analyte of interest is separated at an optimum pH range pH.sub.opt, wherein pH.sub.opt is determined as follows:
pIpH.sub.opt<pI+0.6.
2. The free-flow electrophoresis method of claim 1, wherein the pH value of the two or more individual separation media is set prior to carrying out the free-flow electrophoresis method.
3. The method of claim 1, wherein the pH value of the two or more separation media increases from the anode to the cathode.
4. The method of claim 1, wherein the separation medium comprises 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more individual separation media.
5. The method of claim 1, wherein either (i) the pKa value of the acid is from about 3 to 8, (ii) the pKa value of the base is from about 4 to 10, or (iii) the pKa value of the acid is from about 3 to 8 and the pKa value of the base is from about 4 to 10.
6. The method of claim 1, wherein the concentration of the anion in at least one or each of the at least two individual separation media is from about 3-100 mM.
7. The method of claim 1, wherein in case of a cationic separation the concentration of the cation in at least one or each of the at least two individual separation media is from 5-50 mM.
8. The method of claim 1, wherein in case of an anionic separation the concentration of the anion in at least one or each of the at least two individual separation media is from 5-50 mM.
9. The method of claim 1, wherein either (i) the concentration of the acid is up to 500 mM at the pH of the individual separation medium at the cathode or at the pH of the border stabilization medium at the cathode, (ii) the concentration of the base is up tp 500 mM at the pH of the individual separation medium at the anode or at the pH of the border stabilization medium at the anode, or (iii) the concentration of the acid is up to 500 mM at the pH of the individual separation medium at the cathode or at the pH of the border stabilization medium at the cathode and the concentration of the base is up to 500 mM at the pH of the individual separation medium at the anode of at the pH of the border stabilization medium at the anode.
10. The method of claim 1, wherein the anion bears a single negative charge at the pH value of the individual separation media and/or wherein the cation bears a single positive charge at the pH value of the individual separation media.
11. The method of claim 1, wherein each of the two or more individual separation media comprises at least one anion of two or more acids.
12. The method of claim 1, wherein the free-flow electrophoresis method is interval free-flow electrophoresis method.
13. The method of claim 1, wherein the free-flow electrophoresis method is a continuous free-flow electrophoresis method.
14. The method of claim 1, wherein the analytes are selected from the group comprising cells, cell compartments, nanobeads, nanodiscs, viruses and any compounds.
15. The method of claim 14, wherein the compounds are biological and chemical compounds.
16. The method of claim 15, wherein the compounds are charged biological and chemical compounds.
17. A free-flow electrophoresis method for separating at least one analyte of interest from a mixture of analytes, wherein the method comprises: flowing a separation medium through a separation chamber in a flow direction; applying an electric field in the separation medium by an anode and a cathode, wherein the anode and the cathode are located at a distance from each other and the separation medium flows between the anode and the cathode, and applying the mixture of analytes to the separation medium, whereupon the at least one analyte of interest is separated from the mixture of analytes, or applying the mixture of analytes to the separation medium, and applying an electric field in the separation medium by an anode and a cathode, wherein the anode and the cathode are located at a distance from each other and the separation medium flows between the anode and the cathode, whereupon the at least one analyte of interest is separated from the mixture of analytes; and collecting fractions of the separation medium with at least one fraction comprising the at least one analyte of interest separated from the mixture of analytes; characterized in that the separation medium comprises two or more individual separation media, wherein the two or more individual separation media differ in their pH value, and wherein each of the two or more individual separation media comprise at least one anion of at least one acid and at least one cation of at least one base, wherein the at least one acid is the same in each of the two or more individual separation media and the at least one base is the same in each of the two or more individual separation media, wherein each of the two or more individual separation media comprises at least one cation of two or more bases.
18. A free-flow electrophoresis method for separating at least one analyte of interest from a mixture of analytes, wherein the method comprises flowing a separation medium through a separation chamber in a flow direction; applying an electric field in the separation medium by an anode and a cathode, wherein the anode and the cathode are located at a distance from each other and the separation medium flows between the anode and the cathode, and applying the mixture of analytes to the separation medium, whereupon the at least one analyte of interest is separated from the mixture of analytes, or applying the mixture of analytes to the separation medium, and applying an electric field in the separation medium by an anode and a cathode, wherein the anode and the cathode are located at a distance from each other and the separation medium flows between the anode and the cathode, whereupon the at least one analyte of interest is separated from the mixture of analytes; and collecting fractions of the separation medium with at least one fraction comprising the at least one analyte of interest separated from the mixture of analytes; characterized in that the separation medium comprises two or more individual separation media, wherein the two or more individual separation media differ in their pH value, and wherein each of the two or more individual separation media comprise at least one anion of at least one acid and at least one cation of at least one base, wherein the at least one acid is the same in each of the two or more individual separation media and the at least one base is the same in each of the two or more individual separation media, wherein each of the two or more individual separation media comprises at least one anion of two or more acids and at least one cation of two or more bases, wherein each of the two or more individual separation media comprises at least one anion of two or more acids and at least one cation of two or more bases.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) The present invention will now be further illustrated by the following drawings and examples, from which further features, embodiments and advantages of the invention may be taken, whereby
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DESCRIPTION OF PREFERRED EMBODIMENTS
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(18) Additionally, two border stabilization media inside the vessels 1 and 9 are transported by pump 30 via the feeding lines 11 and 19 and via the media inlets 21 and 29 into the separation medium 31, which functions as the separation area, in the neighborhood of the anode 50 and cathode 60. Furthermore, a counterflow medium is supplied by pump 30 from vessel 10 via the feeding line 20 to the manifold inlets 71, 72 and 73 and will enter to the fractionation area 75.
(19) Analytes are supplied from sample container 36 by means of pump 35 to injection port 37. The thus applied analytes are transported along the flow direction of the separation medium formed by individual separation media 8 to fractionation area 75 comprising fractionation plate 76 with fractionation vials 77. At fraction area 75 individual fractions of the separation medium are collected. The Fig. describes the migration path of two different analytes, if the separation process will be operated as a continuous free-flow electrophoresis method. Voltage is applied to the anode 50 and cathode 60 for the entire period of time while the analyte migrates along the separation area. If operated so as to realize an interval free-flow electrophoresis, voltage is applied to the anode and cathode only for a certain period of time during the migration of the analyte along the separation medium. The migration path of the analytes will look like 2 parallel zones of migration.
Example 1: Separation of Analytes Consisting of a Mixture of Amphoteric Dyes and Non-Amphoteric Dye SPADNS
(20) Analytes consisting of a mixture of amphoteric dyes and non-amphoteric dye SPADNS were subject to the method of the invention realizing a pH step-gradient, whereby the method was carried out as an interval free-flow electrophoresis method (see
(21) The experimental details of the experiments underlying
(22) The separation was conducted in a FFE system on a 0.2 mm gap.
(23) The individual separation media and border stabilization media were as follows:
(24) TABLE-US-00001 Anode border stabilization 150 mM HCl medium: (inlet 1) 300 BISTRIS 250 mM Mannitol Individual separation medium 1: 10 mM BISTRIS (inlet 2&3) adjusted to pH 4.77 with glutamic acid 250 mM Mannitol Individual separation medium 2: 10 mM glutamic acid (inlet 4) adjusted to pH 5.81 with BISTRIS 250 mM Mannitol Individual separation medium 3: 10 mM glutamic acid (inlet 5) adjusted to pH 6.08 with BISTRIS 250 mM Mannitol Individual separation medium 4: 10 mM glutamic acid (inlet 6-8) adjusted to pH 6.87 with BISTRIS 250 mM Mannitol Cathode border stabilization 200 mM triethylamine medium: 100 mM EtOH amine 50 mM TEA 200 mM glutamic acid 250 mM Mannitol Counterflow medium: 250 mM Mannitol
(25) The sample was injected at individual separation medium 5 with 2000 l/h; separation was conducted at 1200V and 53 mA on a 4.5 Minute interval at a media speed of 40 ml/h.
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(27) The separation was conducted in a FFE system on a 0.2 mm gap.
(28) The individual separation medium and border stabilization media were as follows:
(29) TABLE-US-00002 Anode border stabilization medium: 150 mM HCl (inlet 1) 300 BISTRIS 250 mM Mannitol Individual separation medium 1: 10 mM glutamic acid (inlets 2-5) 250 mM Mannitol adjusted to pH 6.86 with BISTRIS Separation buffer 2: 10 mM glutamic acid (inlets 6-8) 250 mM Mannitol adjusted to pH 6.87 with BISTRIS Cathode border stabilization 200 mM triethylamine medium: 100 mM EtOH amine 50 mM TEA 200 mM glutamic acid 250 mM Mannitol Counterflow medium: 250 mM Mannitol
(30) The sample was injected at individual separation medium 5 with 2000 l/h; separation was conducted at 1200V and 53 mA on a 4.5 Minute interval at a media speed of 40 ml/h.
(31) The results are shown in
Example 2: Separation of an Analyte Consisting of a Mixture of Amphoteric Dyes and Non-Amphoteric Dye SPADNS
(32) Analytes consisting of a mixture of amphoteric dyes and non-amphoteric dye SPADNS were subject to the method of the invention realizing a pH step-gradient, whereby the method was carried out as a continuous free-flow electrophoresis method. In order to show the advantage of the method of the invention, the same experiment was carried out using the same method except that no pH gradient was realized, whereby the results are depicted in
(33) The experimental details of the experiments underlying
(34) The separation was conducted in a FFE system on a 0.2 mm gap.
(35) The individual separation media and border stabilization media were as follows:
(36) TABLE-US-00003 Anode border stabilization 150 mM HCl medium: (inlet 1) 300 BISTRIS 250 mM Mannitol Individual separation medium 1: 10 mM BISTRIS (inlets 2&3) 250 mM Mannitol adjusted to pH 4.77 with glutamic acid Individual separation medium 2: 10 mM glutamic acid (inlet 4) 250 mM Mannitol adjusted to pH 5.81 with BISTRIS Individual separation medium 3: 10 mM glutamic acid (inlet 5) 250 mM Mannitol adjusted to pH 6.08 with BISTRIS Individual separation medium 4: 10 mM glutamic acid (inlets 6-8) 250 mM Mannitol adjusted to pH 6.87 with BISTRIS Cathode border stabilization 200 mM triethylamine medium: 100 mM EtOH amine 50 mM TEA 200 mM glutamic acid 250 mM Mannitol Counterflow medium: 250 mM Mannitol
(37) The sample was injected at individual separation medium 5 with 1200 l/h; separation was conducted at 1200V and 53 mA continuously at a media speed of 150 ml/h.
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(39) The separation was conducted in a FFE system on a 0.2 mm gap.
(40) The individual separation media and border stabilization media were as follows:
(41) TABLE-US-00004 Anode border stabilization medium: 150 mM HCl (inlet 1) 300 BISTRIS 250 mM Mannitol Individual separation medium 1: 10 mM glutamic acid (inlets 2-5) adjusted to pH 6.86 with BISTRIS 250 mM Mannitol Individual separation medium 2: 10 mM glutamic acid (inlets 6-8) adjusted to pH 6.87 with BISTRIS 250 mM Mannitol Cathode border stabilization 200 mM triethylamine medium: 100 mM EtOH amine 50 mM TEA 200 mM glutamic acid 250 mM Mannitol Counterflow medium: 250 mM Mannitol
(42) The sample was injected at individual separation medium with 1200 l/h; separation was conducted at 1200V and 52 mA continuously at a media speed of 150 ml/h.
(43) The results are shown in
Example 3: Separation of a Murine Monoclonal Antibody from a Cell Culture Medium
(44) A murine monoclonal antibody was separated from a sample containing the antibody pre-purified by chromatographic techniques (IZE, obtained by using the method of the present invention). Fractions obtained from carrying out the method of the inventions were subject to analysis with PAGIEF (analytical isoelectric focusing on polyacrylamid gels).
(45) The technical details of the method of the invention were as follows.
(46) The separation was conducted in a FFE system on a 0.2 mm gap with a flow rate of the various media of 50 ml/h at a 5 minute interval at 1700V and 120 mA.
(47) 20 l of the sample was diluted with 46.1 separation buffer and injected with 2800 l/h at S1
(48) The individual separation media and border stabilization media were as follows:
(49) TABLE-US-00005 Anode border stabilization medium: 148 mM HCl (inlet 1) 150 mM TEA 250 mM Mannitol Individual separation medium 1: 20 mM TEA (inlet 2) 20 mM glutamic acid 250 mM Mannitol Individual separation medium 2: 10 mM TEA (inlet 3) 10 mM glutamic acid 5 mM NaCl 250 mM Mannitol Individual separation medium 3: 10 mM TEA (inlet 4) 10 mM glutamic acid 250 mM Mannitol adjusted with TEA to pH = 7.53 Individual separation medium 4: 10 mM TEA (inlet 5) 10 mM glutamic acid 250 mM Mannitol adjusted with TEA to pH = 7.83 Individual separation medium 5: 10 mM TEA (inlet 6) 10 mM glutamic acid 250 mM Mannitol adjusted with TEA to pH = 8.15 Individual separation medium 6: 50 mM Tris (inlets 7&8) 15 mM glutamic acid 250 mM Mannitol pH = 8.48 Cathode border stabilizationmedium: 200 mM glutamic acid (inlet 9) 50 mM Tris 300 mM Ammediol 250 mM Mannitol pH = 8.64 Counterflow medium: 250 mM Mannitol
(50) The result is shown in
(51) Fractions 47 to 67 of the FFE run obtained, were subject to the analysis with PAGIEF. The results, as shown
Example 4: Separation of Proteins with pI-Value of 7 (52) Using mixtures of acids and bases with similar values of electrophoretic mobilities protocols can be used for the separation of proteins with a broader range of pI-values. More specifically, the variation of the ratio of the concentrations of the bases allows expanding the pH-range into the alkaline region (pI>7). In a similar approach mixtures of acids with similar values of electrophoretic mobility can be used to expand the pH-range for the separation of proteins with pI values (pI<7). (53) An example for embodiments of the method of the invention making use of at least one anion of each of two acids and at least one cation of each of two bases is presented in the following. (54) The technical details of a respective embodiment of the method of the invention were as follows. (55) The separation was conducted in a FFE system on a 0.2 mm gap with a flow rate of the various media of 50 ml/h at a 5 minute interval at 1700V and 120 mA. (56) 20 l-50 l of the sample were injected at S1 or S5 (57) The individual separation media and border stabilization media were as follows: (58) TABLE-US-00006 Anode border stabi- 148 mM HCl lization medium: 150 mM TEA (inlet 1) 30 mM TRIS 250 mM Mannitol pH = 7.29, alternatively pH = 6.70 or 6.40 Individual separation 20 mM TEA + 4 mM TRIS medium 1: (inlet 2) 20 mM HIBA + 4 mM IBA 250 mM Mannitol pH = 6.50, alternatively pH = 6.93 Individual separation 10 mM TEA + 2 mM TRIS medium 2: (inlet 3) 10 mM HIBA + 2 mM IBA 5 mM NaCl 250 mM Mannitol pH = 6.56, alternatively pH = 7.23 Individual separation 10 mM TEA + 2 mM TRIS medium 3: (inlet 4) 10 mM HIBA + 2 mM IBA 250 mM Mannitol adjusted with TEA + TRIS (5:1) to pH = 7.5: Individual separation 10 mM TEA + 2 mM TRIS medium 4: (inlet 5) 10 mM HIBA + 2 mM IBA 250 mM Mannitol adjusted with TEA + TRIS (5:1) to pH = 7.83 Individual separation 10 mM TEA + 2 mM TRIS medium 5: (inlet 6) 10 mM HIBA + 2 mM IBA 250 mM Mannitol adjusted with TEA + TRIS (5:1) to pH = 8.15 Individual separation 10 mM TEA + 2 mM TRIS medium 6: (inlets 7&8) 15 mM HIBA + 3 mM IBA 250 mM Mannitol adjusted with TEA + TRIS (5:1) to pH = 8.48 Cathode border stabi- 200 mM HIBA + 40 mM IBA lizationmedium: (inlet 9) 50 mM Tris 300 mM Ammediol 250 mM Mannitol pH = 8.64 Counterflow medium: 250 mM Mannitol HIBA = Hydroxy-Isobutyric-Acid IBA = Iso-butyric-Acid (59) The features of the present invention disclosed in the specification, the claims and/or the drawings may both separately and in any combination thereof be material for realizing the invention in various forms thereof.