MULTI-COLOR FLUORESCENT EXCITATION AND DETECTION DEVICE AND NUCLEIC ACID ANALYSIS APPARATUS EMPLOYING SAME
20180231467 ยท 2018-08-16
Inventors
Cpc classification
G01N21/6452
PHYSICS
G01N21/6428
PHYSICS
B01L2300/0829
PERFORMING OPERATIONS; TRANSPORTING
G01N21/6486
PHYSICS
B01L2300/046
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/025
PERFORMING OPERATIONS; TRANSPORTING
B01L7/52
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502715
PERFORMING OPERATIONS; TRANSPORTING
International classification
Abstract
A multi-color fluorescent excitation and detection device comprises at least one illumination module, a cartridge and at least one detection module. The illumination module provides an illumination light at specified range of wavelengths. The cartridge comprises a detection chip comprising plural detection wells arranged around the peripheral of the detection chip. The detection chip is circular shape. Each of the detection wells is accommodated a corresponding fluorescent dye therein. Each of the detection wells includes a first wall and a second wall. The illumination light transmits through the first wall to illuminate on the fluorescent sample so as to excite a fluorescent signal, and the fluorescent signal generated from the fluorescent sample transmits through the second wall. The detection module receives the fluorescent signal and convert the fluorescent signal to an electrical signal.
Claims
1. A multi-color fluorescent excitation and detection device, comprising: at least one illumination module configured to provide an illumination light at specified range of wavelengths; a cartridge comprising a detection chip comprising plural detection wells arranged around the peripheral of the detection chip, wherein each of the detection wells is accommodated a corresponding fluorescent sample therein and includes a first wall and a second wall, wherein the illumination light transmits through the first wall to illuminate on the fluorescent sample within the detection well so as to excite a fluorescent signal, and the fluorescent signal emitted from the fluorescent sample transmits through the second wall; and at least one detection module configured to receive the fluorescent signal and convert the fluorescent signal to an electrical signal.
2. The multi-color fluorescent excitation and detection device according to claim 1, wherein the illumination module is located beside the first wall and the optical axis of the illumination module is aligned with the first wall, and the detection module is located beside the second wall and the optical axis of the detection module is aligned with the second wall.
3. The multi-color fluorescent excitation and detection device according to claim 1, wherein the first wall is a lower wall and the second wall is a front wall.
4. The multi-color fluorescent excitation and detection device according to claim 3, wherein each of the detection wells further comprises a third wall, a fourth wall, a fifth wall and a sixth wall, the third wall is opposite to the first wall, the second wall is opposite to the fourth wall, the fifth wall is opposite to the sixth wall, wherein the third wall is an upper wall, the fourth wall is a rear wall, the fifth wall is a first lateral wall, and the sixth wall is a second later wall.
5. The multi-color fluorescent excitation and detection device according to claim 4, wherein the third wall and the first wall are optical membranes respectively, wherein a thickness of the optical membrane of the third wall and a thickness of the optical membrane of the first wall are ranged from 0.1 mm to 0.2 mm, respectively, wherein a refractive index of the optical membrane of the third wall and a refractive index of the optical membrane of the first wall are ranged from 1.3 to 1.6, respectively.
6. The multi-color fluorescent excitation and detection device according to claim 1, wherein the first wall is a front wall and the second wall is a lower wall.
7. The multi-color fluorescent excitation and detection device according to claim 1, wherein the illumination module comprises: a light source configured to emit the illumination light at wide bandwidth of wavelengths; and a first filter arranged between the light source and the first wall and allowing the illumination light at the specified range of wavelengths to pass through.
8. The multi-color fluorescent excitation and detection device according to claim 7, wherein the light source is a LED or a laser diode.
9. The multi-color fluorescent excitation and detection device according to claim 7, wherein the illumination module further comprises a first pinhole arranged between the light source and the first filter, wherein an aperture of the first pinhole is ranged from 2.0 mm to 3.0 mm.
10. The multi-color fluorescent excitation and detection device according to claim 1, wherein the volume of the detection well is ranged from 10 uL to 50 uL.
11. The multi-color fluorescent excitation and detection device according to claim 1, wherein the detection chip are made of polycarbonate, polymethyl methacrylate or cyclic olefin copolymer, wherein a refractive index of the detection well is ranged from 1.3 to 1.6.
12. The multi-color fluorescent excitation and detection device according to claim 1, wherein the detection module comprises: a second filter configured to receive the fluorescent signal and allow the fluorescent signal at a specific range of wavelengths to pass through; and a detector configured to receive the fluorescent signal at the specified range of wavelengths and convert the fluorescent signal to the electrical signal.
13. The multi-color fluorescent excitation and detection device according to claim 12, wherein the detection module further comprises a second pinhole arranged between the second wall and the second filter, wherein an aperture of the second pinhole is ranged from 2.0 mm to 3.0 mm.
14. The multi-color fluorescent excitation and detection device according to claim 12, wherein the detector is a photodiode, an avalanche photodiode, a charge coupled device or a complementary metal-oxide semiconductor.
15. The multi-color fluorescent excitation and detection device according to claim 1, wherein the multi-color fluorescent excitation and detection device comprises plural illumination modules and plural detection modules, wherein the plural illumination modules provide different color illumination lights to the respective detection wells, and the plural detection modules receive the corresponding fluorescent signals.
16. The multi-color fluorescent excitation and detection device according to claim 1, wherein the detection chip is a planar fluidic chip and includes plural detection wells, at least one first channel and at least one second channel, wherein the at least one first channel is connected with the plural detection wells through the at least one second channel.
17. The multi-color fluorescent excitation and detection device according to claim 1, wherein the detection chip is circular shape, and each of the first wall and the second wall has a specified curvature.
18. A nucleic acid analysis apparatus, comprising: a multi-color fluorescent excitation and detection device comprising: at least one illumination module configured to provide an illumination light at specified range of wavelengths; a cartridge comprising a detection chip comprising plural detection wells arranged around the peripheral of the detection chip, wherein each of the detection wells is accommodated a corresponding fluorescent sample therein and includes a first wall and a second wall, wherein the illumination light transmits through the first wall to illuminate on the fluorescent sample within the detection well so as to excite a fluorescent signal, and the fluorescent signal emitted from the fluorescent sample transmits through the second wall; and at least one detection module configured to receive the fluorescent signal and convert the fluorescent signal to an electrical signal; a chamber receiving the cartridge therein; a fluid delivery unit connected with the chamber and adapted to transport samples within the cartridge for sample purification and/or nucleic acid extraction; a thermal unit disposed in the chamber and adapted to provide a predefined temperature for nucleic acid amplification; and a rotational driven unit connected with the chamber and capable of rotating the cartridge with a predefined program.
19. The nucleic acid analysis apparatus according to claim 18, wherein the chamber is able to be opened and comprises a top chamber and a bottom chamber, wherein each of the at least one illumination module is disposed in an accommodation space of the bottom chamber, and each of the detection module is disposed on the top chamber.
20. The nucleic acid analysis apparatus according to claim 18, wherein the illumination module comprises: a light source configured to emit the illumination light at wide bandwidth of wavelengths; and a first filter arranged between the light source and the first wall and allowing the illumination light at the specified range of wavelengths to pass through.
21. The nucleic acid analysis apparatus according to claim 20, wherein the illumination module further comprises a first pinhole arranged between the light source and the first filter, wherein an aperture of the first pinhole is ranged from 2.0 mm to 3.0 mm.
22. The nucleic acid analysis apparatus according to claim 18, wherein the detection module comprises: a second filter configured to receive the fluorescent signal and allow the fluorescent signal at a specific range of wavelengths to pass through; and a detector configured to receive the fluorescent signal at the specified range of wavelengths and convert the fluorescent signal to the electrical signal.
23. The nucleic acid analysis apparatus according to claim 22, wherein the detection module further comprises a second pinhole arranged between the second wall and the second filter, wherein an aperture of the second pinhole is ranged from 2.0 mm to 3.0 mm.
24. The nucleic acid analysis apparatus according to claim 18, wherein the first wall is a lower wall and the second wall is a front wall, or the first wall is a front wall and the second wall is a lower wall.
25. The nucleic acid analysis apparatus according to claim 18, wherein the detection chip is circular shape, and each of the first wall and the second wall has a specified curvature.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENT
[0025] The present invention will now be described more specifically with reference to the following embodiments. It is to be noted that the following descriptions of preferred embodiments of this invention are presented herein for purpose of illustration and description only. It is not intended to be exhaustive or to be limited to the precise form disclosed.
[0026] The present invention provides a nucleic acid analysis apparatus with isothermal based amplification. More particularly, the present invention provides an all-in-one nucleic acid analysis apparatus with isothermal based amplification, which integrates a fluid delivery unit, a thermal unit, a rotational driven unit, and a multi-color fluorescent excitation and detection device on one single device, so that the processes of sample purification, nucleic acid extraction, nucleic acid amplification and nucleic acid detection can be performed on the all-in-one apparatus to realize nucleic acid analysis in real time.
[0027]
[0028] The fluid delivery unit 2 is connected with the chamber 1 and adapted to transport reagents within the cartridge 6 for sample purification and/or nucleic acid extraction. The thermal unit 3 is disposed in the chamber 1 and adapted to provide a predefined temperature for nucleic acid amplification. The rotational driven unit 4 is connected with the chamber 1 and capable of rotating the cartridge 6 within the chamber 1 with a predefined program. In an embodiment, the rotational driven unit 4 is able to clamp the cartridge 6. The at least one illumination module and at least one detection module 8 are disposed on the chamber 1. Each of the at least one illumination module includes at least one optical component for excitation, and each of the at least one detection module 8 includes at least one optical component for detection, such as nucleic acid detection or sample reaction detection.
[0029] In an embodiment, the chamber 1 includes a top chamber 11 and a bottom chamber 12. The top chamber 11 and the bottom chamber 12 are connected through a hinge 13, but not limited thereto. The bottom chamber 12 has a cavity 121 specifically designed for mounting the cartridge 6 therein. The top chamber 11 can be opened, so that the cartridge 6 is able to be placed into the cavity 121 of the bottom chamber 12. When the top chamber 11 is closed, a confined space is formed in the chamber 1. In an embodiment, the shape of the chamber 1 could be but not limited as cylindrical, spherical, cubic, conical or olivary, and the chamber 1 could be made but not limited by metal, ceramic, polymer, polymer compound, wood, glass, or other materials as long as it is able to provide good thermal insulation.
[0030] The bottom chamber 12 is connected with the fluid delivery unit 2 through tubing or channels. Once the cartridge 6 is mounted in bottom chamber 12, the cartridge 6 is locked and forced to tightly contact the fluid delivery unit 2 without leakage. For example, the cartridge 6 is locked on the bottom chamber 12 by at least one fixing component, such as a clip but not limited thereto.
[0031]
[0032]
[0033] The reagent storing body 63 includes plural reagent cells (not shown) used to store reagents for sample purification and/or nucleic acid extraction. The reagent storing body 63 also includes plural channels connected with the reagent cells for fluid delivery. In an embodiment, the reagent storing body 63 is but not limited to a cylindrical body. The reagent storing body 63 further includes plural openings 632 at the bottom surface of the reagent storing body 63, and the openings 632 are communicated with the reagent cells through the channels. The shape of the openings 632 may be but not limited to circular, linear or other regular or irregular shape. The detection chip 62 further includes at least one opening 66 at the top surface of the detection chip 62, and the opening 66 aligns and communicates with at least one reagent cell of the reagent storing body 63 for adding sample to the cartridge 6.
[0034]
[0035] Each of the detection wells 625 includes a first wall 623, a second wall 621, a third wall 622, a fourth wall 624, a fifth wall and a sixth wall (not shown). The first wall 623 is opposite to the third wall 622. The second wall 621 is opposite to the fourth wall 624. The fifth wall is opposite to the sixth wall. The second wall 621, the fourth wall 624, the fifth wall and the sixth wall are connected with and located between the first wall 623 and the third wall 622. In this embodiment, the first wall 623 is a lower wall, the second wall 621 is a front wall, the third wall 622 is an upper wall, the fourth wall 624 is a rear wall, the fifth wall is a first lateral wall, and the sixth wall is a second lateral wall.
[0036] The illumination light emitted from the illumination module 7 transmits through the first wall 623 (i.e. lower wall) of the detection well 625 to illuminate on the fluorescent sample within the detection well 625 so as to excite a fluorescent signal. The fluorescent signal emitted from the fluorescent sample transmits through the second wall 621 (i.e. front wall) of the detection well 625. The detection module 8 receives the fluorescent signal transmitted from the second wall 621 of the detection well 625 and converts the fluorescent signal to an electrical signal.
[0037] In an embodiment, the first walls 623 of the detection wells 625 have curve surfaces aligned with the at least one illumination module 7, and the second walls 621 of the detection wells 625 have curve surfaces aligned with the at least one detection module 8 during nucleic acid detection. The first wall 623 of the detection well 625 has a specified curvature, such as circular. The shape of the first wall 623 is not limited to the circular and it may also be ellipse or other shape. Therefore, when the illumination light transmits through the first wall 623 of the detection well 625, the illumination light could be focused on the fluorescent sample within the detection well 625 through the first wall 623. The second wall 621 of the detection well 625 has a specified curvature, such as circular. The shape of the second wall 621 of the detection well 625 is not limited to the circular and it may also be ellipse or other shape. Therefore, when the fluorescent signal emitted from the fluorescent sample transmits through the second wall 621 of the detection well 625, the fluorescent signal could be focused on the detection module 8 through the second wall 621.
[0038] Please refer to
[0039] In an embodiment, the illumination module 7 comprises a light source 71 and a first filter 72. The light source 71, such as a LED or a laser diode, is configured to emit the illumination light at wide bandwidth of wavelengths. The first filter 72 is arranged between the light source 71 and the first wall 723. The first filter 72 allows the illumination light at the specified range of wavelengths emitted from the light source 71 to pass through and forbids the unwanted range of wavelengths emitted from the light source 71 to pass through.
[0040] The illumination module 7 further comprises a first pinhole 73. The first pinhole 73 is arranged between the light source 71 and the first filter 72. The first pinhole 73 of the illumination module 7 guides the illumination light generated from the light source 71 to be aligned on the first filter 72 and the first wall 623 of the detection well 625. An aperture of the first pinhole 73 is ranged from 2.0 mm to 3.0 mm, but not limited thereto.
[0041] In an embodiment, the first channel 64 is in communication with the detection wells 625 through the corresponding second channels 65. The first channel 64 is used to dispense the sample to the detection wells 625. Preferably, a cross-section area of the second channel 65 is smaller than a cross-section area of the first channel 64. Therefore, the second channel 65 has a capillary value for passive flow controlling.
[0042] In an embodiment, the third wall 622 and the first wall 623 of the detection well 625 are optical membranes respectively. A thickness of the optical membrane of the third wall 622 and a thickness of the optical membrane of the first wall 623 are ranged from 0.1 mm to 0.2 mm, respectively, but not limited thereto. A refractive index of the optical membrane of the third wall 622 and a refractive index of the optical membrane of the first wall 623 are ranged from 1.3 to 1.6, respectively, but not limited thereto.
[0043] In an embodiment, the volume of the detection well 625 of the detection chip 62 is ranged from 10 uL to 50 uL, but not limited thereto. The detection chip 62 is made of polycarbonate (PC), polymethyl methacrylate (PMMA) or cyclic olefin copolymer (COC). A refractive index of the detection well 625 of the detection chip 62 is ranged from 1.3 to 1.6, but not limited thereto.
[0044] The detection module 8 comprises a second filter 81 and a detector 82. The second filter 81 is configured to receive the fluorescent signal transmitted from the second wall 621 of the detection well 625 and allow the fluorescent signal at a specific range of wavelengths to pass through and forbid the unwanted range of wavelengths to pass through. The detector 82 is configured to receive the fluorescent signal at the specified range of wavelengths passed through the second filter 81 and convert the fluorescent signal to the electrical signal. In an embodiment, the detector 82 is but not limited to a photodiode (PD), avalanche photodiode (APD), charge coupled device (CCD) or complementary metal-oxide semiconductor (CMOS).
[0045] The detection module 8 further comprises a second pinhole 83. The second pinhole 83 is arranged between the second wall 621 of the detection well 625 and the second filter 81. The second pinhole 83 of the detection module 8 guides the fluorescent signal generated from the fluorescent sample to be aligned on the detection module 8. An aperture of the second pinhole 83 is ranged from 2.0 mm to 3.0 mm, but not limited thereto.
[0046] In some embodiments, the multi-color fluorescent excitation and detection device 9 comprises plural illumination modules 7 and plural detection modules 8, for example but not limited to four illumination modules 7 and four detection modules 8. The plural illumination modules 7 provide different color illumination lights for fluorescent detection to the respective detection wells 625. The plural detection modules 8 receive the corresponding fluorescent signals, and thus the plural detection modules 8 can detect multiple targets simultaneously and realize multiplexing detection.
[0047] In an embodiment, four types of the fluorescent dyes are of interest. Each of the detection well 625 is filled with a mixture of four different fluorescent probes. These dyes are standard fluorescent dyes, and their acronyms are FAM, HEX, ROX, and Cy5. The excitation and emission spectra of the fluorescent dyes are shown in
[0048] Table 1 shows signal to noise ratio (SNR) of four types of the fluorescent dyes applied to the multi-color fluorescent excitation and detection device 9, wherein the concentration of four types of the fluorescent dyes are 320 nM respectively. It clearly presents that signal to noise ratio of four types of the fluorescent dyes applied to the multi-color fluorescent excitation and detection device 9 are high. That means sensitivity of the multi-color fluorescent excitation and detection device 9 is great.
TABLE-US-00001 TABLE 1 FAM HEX ROX Cy5 Background 4.83 11.38 0.3 4.4 (mV) Light source 349.1 440.2 16.33 400.7 (mV) SNR_320 nM 72.34 38.69 53.74 91.1
[0049]
[0050] In an embodiment, the rotational driven unit 4 is mounted on the top chamber 11. The rotational driven unit 4 is but not limited to a motor, and it may also be solenoid, manual operation, spring, clockwork or other components, and is able to clamp and rotate the cartridge 6 at predefined angles and pass each detection well 625 in alignment with each illumination module 7 and each detection module 8 sequentially.
[0051] In an embodiment, the illumination module 7 is mounted in the accommodation space 18 of the bottom chamber 12. During the operation, each illumination module 7 aligns to one of the detection wells 625 of the cartridge 6 in order to offer effective illumination for detection. The detection module 8 is mounted in the edge of the top chamber 11 to realize the optical detection so that the sample could be detected in real time during the nucleic acid amplification. Once the cartridge 6 is clamped, the detection module 8 is in line with one of the detection wells 625 on the cartridge 6 and therefore the results of nucleic acid analysis are interpreted. The rotation of the cartridge 6 allows each detection well 625 pass through different illumination module 7 and detection module 8 sequentially. In an embodiment, each illumination module 7 and detection module 8 could offer unique color of illumination and detection so as to provide different colors for fluorescent based detection, and thus the nucleic acid analysis apparatus 100 can detect multiple targets simultaneously and realize multiplexing detection.
[0052] In realistic operation, there probably has some deviation when the optical axis of the illumination module 7 or the optical axis of the detection module 8 is aligned with the detection well 625. Table 2 shows signal to noise ratio of two types of the fluorescent dyes applied to the multi-color fluorescent excitation and detection device 9 when the optical axis of the illumination module 7 or the optical axis of the detection module 8 is aligned with the detection well 625 with deviation. It clearly presents that full-width at half maximum (FWHM) of signal to noise ratio of two types of the fluorescent dyes applied to the multi-color fluorescent excitation and detection device 9 is within 2 degree to 2 degree. That means the multi-color fluorescent excitation and detection device 9 allows some deviation when the optical axis of the illumination module 7 or the optical axis of the detection module 8 is aligned with the detection well 625.
TABLE-US-00002 TABLE 2 Angle (degree) ROX_SNR ROX_SNR (%) FAM_SNR FAM_SNR (%) 0 26.94 100 76.97 100 1 19.63 73 57.77 75 2 13.36 50 41.16 53 3 8.15 30 27.13 35 4 3.97 15 15.69 20 5 0.84 3 6.84 9
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[0054] In conclusion, the embodiment of the present invention provides a multi-color fluorescent excitation and detection device and a nucleic acid analysis apparatus. The multi-color fluorescent excitation and detection device which integrates the illumination module, the cartridge and the detection module on one single device, so that the multi-color fluorescent excitation and detection device has compact structure, smaller volume and lighter weight. Besides, the multi-color fluorescent excitation and detection device does not need expensive optical components so that the multi-color fluorescent excitation and detection device has lower cost. Further, due to the arrangements of multiple illumination modules, multiple detection wells and multiple detection modules, both multiplexing nucleic acid analysis and multiple color multiplexing detections are achieved. Moreover, signal to noise of the multi-color fluorescent excitation and detection device of the present invention is high. In addition, the deviation of the rotating of the cartridge is allowed.
[0055] While the invention has been described in terms of what is presently considered to be the most practical and preferred embodiments, it is to be understood that the invention needs not be limited to the disclosed embodiment.