Computation method of relative cardiovascular pressure
09986966 ยท 2018-06-05
Assignee
Inventors
Cpc classification
A61B5/055
HUMAN NECESSITIES
G06F30/23
PHYSICS
A61B5/7271
HUMAN NECESSITIES
International classification
A61B5/00
HUMAN NECESSITIES
A61B5/055
HUMAN NECESSITIES
Abstract
The present invention provides a method for the determination of relative pressure fields from flow-sensitive data, the method comprising: applying a finite element discretization to the Pressure Poisson Equation (PPE):
where vecter b is a function of a given blood velocity data, u represents the velocity, w the reference velocity, t the time, f a volume force, p the pressure and and the fluid density and viscosity, respectively, and wherein the PPE is now defined as the divergence of the above equation and gives a higher order derivative of the pressure field p: p=.Math.b.
Claims
1. A non-iterative method for determining relative pressure within soft tissue of a subject, comprising: a) positioning the subject in association with a scanner; b) selecting a region of interest in the subject comprising soft tissue and blood flow; c) collecting flow data using the scanner over an imaging space within the region of interest, wherein the flow data comprises viscous, temporal, and spatial pressure components that contribute to pressure values; d) transforming the flow data into velocity data comprising one or more velocity vectors; e) determining tissue geometry and flow measurement points within the imaging space, wherein the imaging space comprises an internal imaging space and an external imaging space, and separating the imaging space into fluid and solid domains; f) generating a computational mesh based on the velocity data collected at the flow measurement points within the fluid domains; g) masking out the external imaging space; h) reducing the computational mesh based on the region of interest; i) determining relative pressure data within the internal imaging space using the reduced computational mesh, wherein determining the relative pressure data comprises Gaussian integration and finite-element discretization; j) post-processing the relative pressure data; k) visualizing the post-processed relative pressure data; and l) visualizing pressure components within the relative pressure data, wherein the pressure components comprise viscous, temporal, and spatial components that contribute to the relative pressure data.
2. The method of claim 1, wherein the scanner is a magnetic resonance or an ultrasound scanner.
3. The method of claim 1, wherein the flow data is 4D flow data.
4. The method of claim 1, wherein the flow data is time-resolved velocity data.
5. The method of claim 1, wherein the flow data comprises information on temporal acceleration, spatial acceleration, and viscous dissipation.
6. The method of claim 1, further comprising flow data pre-processing after collecting the flow data.
7. The method of claim 6, where the pre-processing comprises one or more of eddy-current elimination, velocity aliasing, noise filing, MR segmentation, flow field masking, cardiovascular geometry determination, individually or any combination thereof.
8. The method of claim 1, further comprising gating the collecting of the flow data to one or more cardiac cycles, one or more respiratory cycles, or both.
9. The method of claim 8, wherein determining tissue geometry within the imaging space is performed by assuming a mean aortic velocity between 0 and 1 present over 50% of the cardiac cycle.
10. A non-iterative method for determining relative cardiovascular pressure, comprising: a) positioning a subject in association with a scanner; b) selecting a region of interest in the subject comprising the heart; c) collecting flow data using the scanner across an imaging space within the region of interest, wherein the flow data comprises velocity data with phase shifts and viscous, temporal, and spatial pressure components that contribute to cardiac pressure values, and separating the imaging space into fluid and solid domains; d) transforming the phase shifts in the flow data into velocity data comprising one or more velocity vectors; e) pre-processing the velocity data; f) generating a computational mesh based on velocity data at flow measurement points within the fluid domains of the imaging space; g) determining cardiovascular geometry based on the computational mesh, the velocity data, and a reference and determining an image space comprising an internal cardiac image space and an external cardiac image space; h) masking the image space to exclude the external cardiac image space; i) reducing the computational mesh based on the masked image space and region of interest; j) generating relative finite-element pressure data within the internal cardiac image space from the reduced computational mesh; k) post-processing the relative finite-element pressure data; l) visualizing the relative finite-element pressure data; and m) visualizing the viscous, temporal, and spatial pressure components that contribute to cardiac pressure values for determining the relative cardiovascular pressure.
11. The method of claim 10, wherein the velocity vectors comprise encoded information on temporal acceleration, spatial acceleration, and viscous dissipation.
12. The method of claim 10, wherein generating finite-element pressure data further comprises: k) separating the pressure data into the components of transient and convective momentum, viscous resistance and volume forces; l) transforming the separated pressure data to include smoothing options and avoid boundary conditions; m) determining a weak formulation of the pressure fields by multiplying the transformed separated pressure data by a finite element test function and integrating across computational domain using Gaussian integration; n) performing Galerkin finite element discretization on the weak formulation of the pressure fields; and o) determining the pressure fields by introducing element-based labelling factor to the volume integrals derived from the weak formulation of the pressure fields, using to determine relative pressure from known flow fields, and using values for masking into .sub.int and .sub.ext, wherein =1 on .sub.int and =0 on .sub.ext, and masking is scaled with 01.
13. The method of claim 10, wherein the scanner is a magnetic resonance or ultrasound scanner.
14. The method of claim 10, wherein the flow data is 4D flow data.
15. The method of claim 10, wherein the flow data is time-resolved velocity data.
16. The method of claim 10, wherein the flow data comprises information on temporal acceleration, spatial acceleration, and viscous dissipation.
17. The method of claim 10, where the pre-processing comprises one or more of eddy-current elimination, velocity aliasing, noise filing, MR segmentation, or flow field masking, cardiovascular geometry determination, individually or any combination thereof.
18. The method of claim 10, further comprising gating the collecting of the flow data to one or more cardiac cycles, one or more respiratory cycles, or both.
19. The method of claim 17, wherein cardiovascular geometry determination is performed by assuming a mean aortic velocity between 0 and 1 present over 50% of the cardiac cycle.
20. A non-iterative method for determining relative cardiovascular pressure, comprising: a) positioning a subject in association with a scanner; b) selecting an area of interest in the subject; c) collecting 4D flow data at measurement points in the area of interest in the subject with a scanner, wherein the 4D flow data comprises viscous, spatial, and temporal pressure components that contribute to relative cardiovascular pressure; d) mapping cardiovascular geometry and separating fluid and solid domains in the area of interest; e) generating a computational mesh from the 4D flow data collected at measurement points within the fluid domain; f) determining relative cardiovascular pressure from the computational mesh; and g) visualizing relative pressure and the pressure components that contribute to relative cardiovascular pressure.
21. The method of claim 20, wherein the scanner is a magnetic resonance or ultrasound scanner.
22. The method of claim 20, wherein the 4D flow data is time-resolved velocity data.
23. The method of claim 20, wherein the 4D flow data comprises information on temporal acceleration, spatial acceleration, and viscous dissipation.
24. The method of claim 20, further comprising gating the collecting of the 4D flow data to one or more cardiac cycles, one or more respiratory cycles, or both.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) Many aspects of the disclosure can be better understood with reference to the following drawings. The components in the drawings are not necessarily to scale, emphasis instead being placed upon clearly illustrating the principles of the present disclosure. Moreover, in the drawings, like reference numerals designate corresponding parts throughout the several views.
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DETAILED DESCRIPTION
(13) Having summarized various aspects of the present disclosure, reference will now be made in detail to the description of the disclosure as illustrated in the drawings. While the disclosure will be described in connection with these drawings, there is no intent to limit it to the embodiment or embodiments disclosed herein. On the contrary, the intent is to cover all alternatives, modifications and equivalents included within the spirit and scope of the disclosure as defined by the appended claims.
(14) It should be emphasized that the above-described embodiments are merely examples of possible implementations. Many variations and modifications may be made to the above-described embodiments without departing from the principles of the present disclosure. All such modifications and variations are intended to be included herein within the scope of this disclosure and protected by the following claims.
(15) In order to fully enable the skilled person to understand the present invention, the mathematical background is firstly discussed.
(16) Governing Equations
(17) The pressure estimation process is based on the continuum mechanics principles of mass and momentum conservation. The underlying equations can be used to derive the PPE foundations needed for the pressure estimation process presented.
(18) Computing the pressure distribution p that corresponds to a given incompressible flow field u, u is expected to satisfy the divergence-free condition .Math.u 0. Following Newton's second law, the relative pressure distribution can be seen as a consequence of transient and convective momentum, viscous resistance and volume forces. Using the approach described below the separation of Pressure into these forces (transient and convective momentum, viscous resistance and volume forces) can be performed with the relative magnitudes and spatial-temporal patterns providing disease biomarkers. On an Arbitrary Lagrangian Eulerian (ALE) reference frame, this condition is formulated by the Navier-Stokes equations:
(19)
where u represents the velocity, w the reference velocity, t the time, f is a volume force, p the pressure and and the fluid density and viscosity, respectively. Obtaining a pressure distribution from its gradient given in Equation (1) is not straightforward. Most approaches identify spatial integration paths which are often significantly sensitive when applied to noisy input data. In order to include smoothing options and to avoid boundary condition sensitivities, the present invention starts with a higher-order pressure derivative which yields the PPE problem as the basis of the approach of the present invention. Rearranging Equation (1) for p yields:
p=b,(2)
where the right-hand side vector b is a function of given velocity data and depends on the constitutive properties of blood:
(20)
(21) The PPE is now defined as the divergence of Equation (2) and gives a higher order derivative of the pressure field p:
p=.Math.b.(4)
Numerical Discretisation
(22) In order to solve for cardiovascular pressure fields, the method of the present invention utilises a finite element based approach to the field of cardiovascular pressure estimation, driven by volume sources rather than surface fluxes. This has the advantage that not only the use of gradient boundary conditions is avoided but it also allows a reduction of the computational domain at a later stage.
(23) A weak formulation is obtained by multiplying Equation (4) with the finite element test function q and subsequently integrating over the computational domain :
.sub.(.Math.p)qd=.sub.(.Math.b)qd,qH.sup.1()(5)
(24) In the method of the present invention, the pressure estimation approach is based on applying integration by parts to both the left-hand and right-hand side of Equation (5), which yields the surface integral:
.sub.(pb).Math.nqd=0,
leaving only the volume integrals
.sub.p.Math.qd=.sub.b.Math.qd.(6)
(25) Following a standard Galerkin finite element discretisation, the matrix system K.sub.mnp.sub.n=s.sub.m for Equation (6) for m, n=1, . . . , N with the number of degrees of freedom (DOF) N, is obtained, and therefore,
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(27) The right-hand side source is discretised as:
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with
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(30) The scalar function .sub.m represents the finite element test functions, .sub.n the basis functions for the resulting pressure field with m, n=1, N. The vector x contains global coordinates in D-dimensional space and i, k=1, . . . , D. It should be noted that Equation 9 accounts for both viscous and inertia terms. It can therefore be applied to the whole range of laminar, low- and high-Reynolds number flows.
(31) In order to capture the second derivative terms correctly, a tri-cubic Lagrangian or hermite basis function is suited best for the finite-element implementation. The latter allows the improvement of real data quality by applying additional projection and data smoothing methods.
(32) Embedded Pressure Poisson Approach
(33) For the general purpose of cardiovascular pressure estimation, the embedded velocity fields are characterised by introducing the element-based labelling factor into Equation (6) which yields:
{tilde over (K)}.sub.mnp.sub.n=s.sub.m(10)
where
{tilde over (K)}.sub.mn=.sub.(.sub.m.Math..sub.n)d,(11)
and s.sub.m is defined in Equation (8). Assuming a velocity screen procedure that results in a discretised domain containing both the fluid domain of interest .sub.int and the surrounding area .sub.ext, can now be used to perform the PPE computation without extra segmentation or mesh adaptation where =1 on .sub.int and =0 on .sub.ext. Elements e are treated as boundary elements if one degree of freedom (DOF) of .sup.e is labeled as an outside voxel corresponding to .sub.ext. Masking information may be treated as piecewise constant or, alternatively, evaluated and scaled with 01. This avoids the propagation of .sub.int-source signals to .sub.ext and any external influence from .sub.ext on .sub.int.
Verification and Validation
(34) In order to test the discretised PPE problem, the following verification process was performed, using a self-adjoint analytic solution of the form:
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which represents a complex spatial pressure field
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inside a regular cube with side length L=1 and reference pressure p.sub.0=0. The numerical solution was applied under mesh refinement and for different orders of interpolation.
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(38) The results for mesh refinements by a factor of 2 are shown in
(39) The present approach also gives accurate results when embedding given flow fields in a data acquisition space. Two different examples can be seen in
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(41) The left-hand side of
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respectively, where u.sub.max is the maximum velocity inside a channel with width D, flow direction x, centre line y=0 and reference pressure p.sub.0. Due to the elimination of DOFs outside the fluid domain, the two respective pipe flows (u.sub.1=u(y)=u.sub.2; p.sub.1=p(x)=p.sub.2) are completely separated and isolated from each other.
(43) Whereas
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(45) The left-hand side of
(46) The parameters for
(47) As far as finite-element order and discretisation density is concerned, the convergence test example in
(48) Modelling and Application
(49) The data processing approach described above is applied in order to estimate the velocity-based pressure field for a dataset of a healthy human subject.
(50) Data Acquisition and Processing
(51) The velocity input for the method of the present method is provided by phase-contrast MR imaging, a technique that allows blood flow velocity to be measured and post-processed non-invasively. Measurements were performed on a 3T system (Magnetom Trio, Siemens AG, Erlangen, Germany) with a standard 8-channel phased-array coil. 4D flow data with three-directional velocity encoding and covering the whole heart fluid domain were acquired using a navigator respiration controlled and ECG-gated rf-spoiled gradient echo sequence (spatial resolution: 2.952.502.90 mm.sup.3, temporal resolution: 38.4 ms, velocity encoding: 150 cm/s, time frames per cardiac cycle: 17).
(52) Initial raw data normally contains magnitude and three-dimensional phase information for each voxel of the initial imaging space. Voxel-based phase shifts can be directly transformed into velocity vectors which marks the starting point for the method of the present cardiovascular pressure estimation. Data-processing was established to further enhance quality (e.g. eddy-current elimination, velocity aliasing or noise filtering) and to allow for fluid domain representation (i.e. MR segmentation and flow field masking). Noise masking can be performed by thresholding of the signal deviation of the magnitude data in order to exclude regions with low signal intensity. Further noise reduction and separation of static tissue and vessels is achieved by comparing the standard deviation of the velocity-time course for each pixel in the flow data set. MR segmentation output was used to mask geometric entities based on an averaged fluid domain representation.
(53) The following procedures are typically applied before the 4D flow data enters the pressure estimation workflow: Anti aliasing, Noise masking, Eddy current reduction. Based on a speed sum squares iso-surface representation over all time-steps T
=.sub.j=1.sup.T.sub.i=1.sup.3u.sub.i.sup.2(t.sub.j)=const.,(16)
(54) an averaged segmentation of the cardiovascular geometry may be created. Since this iso-value represents the basis for fluid domain masking (.sub.int/.sub.ext), careful distinction of adjacent cavities or vessels is taken into account.
(55) Pressure Estimation Workflow
(56) In order to allow a smooth and straightforward representation of the cardiovascular geometry of interest, the present method follows the mean fluid domain approach. This approach is suitable for use in 4D flow analysis based on MR segmentation information.
(57) Geometrical Representation
(58) The left-hand side of
(59) Thresholds are set such that they allow for the best mean representation of the cardiovascular velocity field. Following this mean geometrical representation, the right-hand side of
(60) Pressure Field Estimation
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(62) Visualisation and Post-Processing
(63) Velocity Field and Estimated Relative Pressure
(64) The left-hand side of
(65) Since there is almost no blood flow present at the very beginning of systole (snapshot 1) no differences of relative pressure can be identified. However, as soon as the early systole begins, a pressure drop over the aortic valve plane can be seen (snapshot 2) followed by an increase of both the magnitude and differential values of the relative pressure field (snapshot 3). After the main blood flow has passed the aortic arch, the highest relative pressure value develops due to the centrifugal forces (snapshot 4). Finally, the relative pressure field returns to its initial state (snapshot 5 and 6). The reference point for the relative pressure field has been located at the end of the descending aorta. Pressure values are measured relative to the pressure at this reference point.
(66) Spatial and Temporal Correlation
(67) Analysing the spatial and temporal correlation of velocity and pressure, it must be noted that the results presented are currently gained from one volunteer only. In order to clarify the velocity/pressure interdependence, in
(68) Whereas
(69) In the method of the present invention, a Pressure-Poisson-based estimation process within a multi-physics finite element method is used. Pressure field values are directly calculated without the requirement of iterative processes and boundary conditions. Measured 4D flow data have been used to identify volume source distributions which represent the only driving force of an underlying pressure estimation process; the determination of sensitive boundary conditions is thus avoided. The method of the present invention, thus, accounts for pressure changes due to both acceleration and viscous resistance and is thus, advantageously, valid for both low- and high-Reynolds number laminar flows. The method of the present invention provides a platform for a wide range of applications both in clinically relevant diagnosis and in computational cardiac modelling.
(70) Volume Source Field Projection
(71) This method of the present invention follows a treatment of the numerical boundary conditions which has a significant influence on the overall pressure estimation work-flow. On the one hand, the so-called Neumann boundary conditions are based on gradients of the underlying velocity field and show a high sensitivity when derived from noisy data. On the other hand, the Neumann conditions need to be applied properly to the actual fluid domain boundary which normally lies inside the imaging domain, e.g. when considering a normal 4D flow study. The significance of the present approach has the advantage that it avoids the need to determine Neumann conditions. It can therefore be applied to a segmented fluid domain but also directly to the initial imaging space without any difference to the pressure estimation result.
(72) Therefore, the present invention has the advantages that it allows additional data enhancement (divergence-free or C.sup.1 conditions) and, the source field formulation allows the complete elimination of the outside domain. The isolation of the volume source field is also directly related to a speed-up in computational time. Since only the internal flow region contributes to the numerical problem size, there is a direct time advantage given by the ratio of internal to overall imaging space. In addition, the present method is directly able to determine the pressure distribution in one iteration only, i.e. almost real-time.
(73) It should be emphasized that the above-described embodiments are merely examples of possible implementations. Many variations and modifications may be made to the above-described embodiments without departing from the principles of the present disclosure. All such modifications and variations are intended to be included herein within the scope of this disclosure and protected by the following claims.