System and method for evaluating anisotropic viscoelastic properties of fibrous structures
09965852 ยท 2018-05-08
Assignee
Inventors
Cpc classification
A61B5/4082
HUMAN NECESSITIES
A61B5/055
HUMAN NECESSITIES
A61B5/725
HUMAN NECESSITIES
International classification
A61B5/055
HUMAN NECESSITIES
Abstract
System and method for diagnosing brain conditions including evaluating fiber pathways of white matter tracts using a diffusion tensor imaging (DTI) process, tracking the propagation of waves traveling at specific angles to the fiber pathways by performing a 3D magnetic resonance elastography (MRE) process at the same spatial resolution and voxel position as the DTI, analyzing the viscoelastic properties using an inversion having at least nine elastic coefficients, determining the curvature along the pathways, differentiating the spatial-spectral filter twice with respect to arc length along the pathways, and diagnosing a brain condition based on the viscoelastic properties.
Claims
1. A noninvasive computer-based method for diagnosing a brain condition, the method comprising: measuring, using a processing device, a physical position in space relative to a global coordinate system of fiber pathways within an anisotropic medium; measuring, using the processing device, dynamic elastic displacements within a volume surrounding the fiber pathways at locations of the measured physical position; applying, using the processing device, a spatial-spectral filter to the measured displacements to obtain elastic wave components traveling at angles to and along the fiber pathways; applying, using the processing device, a Helmholtz decomposition to the filtered displacements to determine longitudinal and transverse components; computing, using the processing device, Laplacians corresponding to the elastic wave components by differentiating the longitudinal and transverse components twice with respect to a parameterized representation of the fiber pathways along the angles and along the fiber pathways, wherein the Laplacians correspond to the elastic wave components and include effects of curvature on stiffness along the fiber pathways, wherein the effects of curvature include derivatives of a parameterized position vector of the spatial spectral filter; evaluating, using the processing device, elastic coefficients by dividing an acceleration of the longitudinal and transverse components by the Laplacians corresponding to the longitudinal and transverse components; and diagnosing, using the processing device, the brain condition based on the elastic coefficients identified along the fiber pathways.
2. The method as in claim 1, further comprising: applying a global band-limited filter to the measured displacements before applying the spatial-spectral filter.
3. The method as in claim 1, further comprising: calculating a local reference frame based on the global coordinate system and on a plane perpendicular to the fiber pathways.
4. The method as in claim 1, further comprising: extending the fiber pathways using automated tractography.
5. The method of claim 1, wherein measuring the dynamic elastic displacements further comprises: measuring the dynamic elastic displacements using a Magnetic Resonance Elastography (MRE) process.
6. The method of claim 5, further comprising: determining the fiber pathways using a diffusion tensor imaging (DTI) process.
7. The method of claim 6, wherein the spatial-spectral filter obtains the elastic wave components based on results from both the MRE process and the DTI process.
8. The method of claim 6, further comprising: computing the Laplacians based on results from both the MRE process and the DTI process.
9. The method of claim 1, wherein the effects of curvature are nonlinear.
10. The method of claim 1, further comprising: determining an inversion model for the fiber pathways based on an output of the spatial-spectral filter and an output of the Helmholtz decomposition.
11. The method of claim 10, wherein the inversion model is an orthotropic inversion model.
12. The method of claim 10, wherein the inversion model is a monoclinic inversion model.
13. The method of claim 10, wherein the inversion model is a triclinic inversion model.
14. The method of claim 10, wherein the inversion model is a hexagonal inversion model.
15. The method of claim 10, wherein the inversion model is a trigonal inversion model.
16. A noninvasive computer-based method for diagnosis of brain conditions, the method comprising: determining fiber pathways of white matter tracts using a diffusion tensor imaging (DTI) process, the white matter tracts having viscoelastic properties, the DTI process having a specific spatial resolution and a voxel position; measuring elastic waves traveling within a volume surrounding the fiber pathways by performing a 3D magnetic resonance elastography (MRE) process at the same spatial resolution and voxel position as the DTI process; identifying the elastic waves traveling at pre-selected angles with respect to the white matter tracts using a spatial-spectral filter on the measured elastic waves; evaluating longitudinal and transverse components of the identified elastic waves using a Helmholtz decomposition; determining a parameterized representation of Laplacians of the identified elastic waves, wherein the parameterized representation is .sup.2u.sub.SF(r())/.sup.2, wherein u.sub.SF represents a spatial spectral filter of the measured displacements, and wherein r() represents a parameterized position vector along the fiber pathways; evaluating Laplacians of the identified elastic waves based on the parameterized representation, wherein the Lapiacians include effects of curvature on stiffness along the fiber pathways, and wherein the effects of curvature include derivatives of the parameterized position vector; dividing an acceleration of the longitudinal and transverse components by Laplacians corresponding to the longitudinal and transverse components to obtain viscoelastic coefficients; and diagnosing the brain conditions based on the viscoelastic coefficients.
17. A system for diagnosing a brain condition, the system comprising: a measuring device configured to measure a physical position in space relative to a global coordinate system of fiber pathways within an anisotropic medium; a displacement processor configured to measure dynamic elastic displacements within a volume surrounding the fiber pathways at locations of the measured physical position; a filter processor configured to apply a spatial-spectral filter to the measured displacements to obtain elastic wave components traveling at angles to and along the fiber pathways, the filter processor applying a Helmholtz decomposition to the filtered displacements to determine longitudinal and transverse components; a Laplacian processor configured to compute Laplacians corresponding to the elastic wave components by differentiating the longitudinal and transverse components twice with respect to a parameterized representation of the fiber pathways along the angles and along the fiber pathways, wherein the Laplacians correspond to the elastic wave components and include effects of curvature on stiffness along the fiber pathways, wherein the effects of curvature include derivatives of a parameterized position vector of the spatial spectral filter; a stiffness processor configured to evaluate elastic coefficients by dividing an acceleration of the longitudinal and transverse components by the Laplacians corresponding to the longitudinal and transverse components; and a diagnosis processor configured to diagnose the brain condition based on the elastic coefficients identified along the fiber pathways.
18. The system as in claim 17, wherein the filter processor is further configured to: apply a global band-limited filter to the measured displacements before applying the spatial-spectral filter.
19. The system as in claim 17, wherein the Laplacian processor further comprises: calculating a local reference frame based on the global coordinate system and on a plane perpendicular to the fiber pathways.
20. The system as in claim 17, wherein the Laplacian processor further comprises: extending the fiber pathways using automated tractography.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1)
(2)
(3)
(4)
(5)
(6)
(7)
DETAILED DESCRIPTION
(8) The problems set forth above as well as further and other problems are solved by the present teachings. These solutions and other advantages are achieved by the various embodiments of the teachings described herein below. Referring now to
(9) Method 150 can optionally include applying a global band-limited filter before applying the spatial-spectral filter, applying a sliding window band-limited filter based on the longitudinal and transverse components, calculating a local reference frame based on the global coordinate system and on a plane perpendicular to the pathways, and extending the pathways using automated tractography. The inversion can be an orthotropic inversion, a monoclinic inversion, or a triclinic inversion.
(10) MRE uses a phase contrast Magnetic Resonance Imaging (MRI) approach for the noninvasive measurement of intentionally induced dynamic elastic displacements throughout biological media. The MRE measurements can be performed on, for example, but not limited to, a standard 1.5 T clinical MRI scanner manufactured by SIEMENS, Mnchen, Germany. For the displacement measurements using MRE, a head-cradle extended-piston driver can be used for monochromatic excitation in the range from 50-200 Hz. A piezoelectric actuator can also be used to excite the human head as well. A single-shot spin-echo Echo Planar Imaging (EPI) sequence can be used for rapid 3D motion field acquisition capable of acquiring a full set of MRE data typically within less than three minutes per volunteer per frequency consisting of 12811270 pixels with a 222 mm.sup.3 isotropic voxel resolution. The three directions of the encoding gradient can provide the phase and the three Cartesian components of the displacement field at two (or more) equally spaced time steps over one vibration period. The motion encoding gradients can be matched to the frequency of mechanical vibration and include two periods of a cosine approximated by a trapezoidal shape providing the first moment nulling. Further imaging parameters can include echo time (TE), 99 ms, and repetition time (TR), 7210 ms.
(11) DTI uses multi-aspect magnetic fields measured with MRI for the determination of water perfusion along pathways such as nerve fibers and muscle. DTI can provide a set of orthogonal unit vectors describing the orientation of the local reference frame of the waveguide. The DTI measurements can evaluate the fiber positions of the CSTs using, for example, a single-shot EPI sequence (TR/TE-8500/96 ms) with 12 non-collinear directions and one B.sub.0 volume (bvalue=1000 s/mm.sup.2, six averages). The spatial resolution and image slice positions can be identical to those of the MRE measurements. Tensor calculation and tractography along the CSTs can be performed using the tools from, for example, the FMRIB Software Library (FSL), specifically dtifit and probtrackx. For the fiber position measurements using DTI, a single-shot EPI sequence, for example, can be used with twelve noncollinear directions and six averages. Spatial resolution and image slice positions can be the same as in MRE.
(12) Referring now to
(13)
where I.sub.k represents the interval of variation of k=|k| and dependence on arclength, , is assumed. These expressions represent a spatial-spectral filter that provides the wave components that are traveling along specific directions relative to the path of a waveguide 14 defined by r 16. Equations [1] and [2] are equivalent to a spatially dependent Radon transform. For the displacements within this local reference frame with spatially dependent components n.sub.1(r), n.sub.2(r), n.sub.3(r), of unit vector n(r) 12, and filtered representation as u.sub.SF(r) where r is the local position vector, the following set of relationships holds:
u.sub.1=n.sub.1,xu.sub.SF,x+n.sub.1,yu.sub.SF,y+n.sub.1,zu.sub.SF,z,
u.sub.2=n.sub.2,xu.sub.SF,x+n.sub.2,yu.sub.SF,y+n.sub.2,zu.sub.SF,z,
u.sub.3=n.sub.3,xu.sub.SF,x+n.sub.3,yu.sub.SF,y+n.sub.3,zu.sub.SF,z,[3]
(14) The Helmholtz decomposition provides a method for separating a complicated wavefield into longitudinal (compressional) and transverse (shear) components. This is performed such that pure modes of propagation can be used in the inversions. The total displacement can be expressed as the sum of three components such that
u(r)=u.sub.L(r)+u.sub.T(r)+u.sub.H(r),[4]
where u.sub.L(r) is the longitudinal (or irrotational) component and u.sub.T(r) is the transverse (or solenoidal) component and u.sub.H(r) is the Hodge term. This nomenclature is related to the following conditions imposed on the three components:
.Math.u=.Math.u.sub.L and u.sub.L=0.
u=u.sub.T and .Math.u.sub.T=0.
.Math.u.sub.H=0 and u.sub.H=0.[5]
The spatial Fourier transforms of these vectors can be shown to be:
(15)
(16) There are two methods to evaluate the Laplacians along the pathways: one includes the effects of curvature on the wave propagation, and the other assumes plane wave propagation along the local tangent vectors free from the effects of curvature. The representation of the Laplacian which includes the effects of curvature on the wave propagation can be obtained by differentiating Equations 3 twice with respect to arc length to obtain the following expressions where dependence on j=1,3 (x,y,z) is assumed:
(17)
(18) The representation free from the effects of curvature can be identified as being the first term in Equation [7] and the term in the fourth line of Equation [9]. This assumes plane wave propagation along the local tangent vector alone. The effects of including curvature can be seen to bias the inherent material parameter as an index of refraction alters wave speed in ray theory. Therefore, the orthotropic inversion can be computed at each pixel free from the effects of curvature providing the nine inherent viscoelastic coefficients.
(19) Referring now to
(20) Referring now to
(21)
(22) Referring again primarily to
(23) Continuing to refer to
(24)
(25) In Equations [11-16], u.sub.1 (n.sub.1), u.sub.2 (n.sub.2), u.sub.3 (n.sub.3), u.sub. (n.sub.), u.sub..sub.
(26) Complex elastic coefficients C.sub.11-C.sub.66 (
(27)
where j=1,6. More general relationships for anisotropic wave velocities are possible.
(28) Redundancies in the coefficients of the orthotropic elastic tensor can expose lower order anisotropic (or isotropic) models as being valid or representative of the medium. For example, while the orthotropic elastic tensor includes nine independent elastic coefficients, redundancies in the solution for these coefficients indicated that the corticospinal tracts (CSTs) could be well represented by a hexagonal (transversely isotropic) model comprised of five independent elastic coefficients. In this fashion, the method of the present embodiment can be adapted to an unknown medium being evaluated. The orthotropic elastic tensor, including nine elastic coefficients, is the highest order anisotropic model that can be used to solve for the individual coefficients separately of one another avoiding ill conditionedeness in the inversion procedure. Few materials in nature have a higher degree of anisotropy than orthotropy. Thus, with the model described above, there is a reasonable approximation of the degree of anisotropy either characteristic of, or exceeding that of human tissue.
(29) Continuing to refer to
(30) The point normal representation of a plane with normal {right arrow over (n)}.sub.3 can be expressed as.
n.sub.3x(xx.sub.0)+n.sub.3y(yy.sub.0)+n.sub.3z(zz.sub.0)=0(19)
For a solution for {right arrow over (n)}.sub.2 which lies in this plane and is perpendicular to {right arrow over (n)}.sub.3, let n.sub.2y=n.sub.3z. Then, n.sub.2y=yy.sub.0, and therefore y=n.sub.2y+y.sub.0=n.sub.3z+y.sub.0. Now,
{right arrow over (n)}.sub.3.Math.{right arrow over (n)}.sub.2=n.sub.3x.Math.n.sub.2x+n.sub.3y.Math.n.sub.2y+n.sub.3z.Math.n.sub.2z=0,(20)
n.sub.2y=n.sub.3z, and n.sub.2x=n.sub.3y. Thus,
n.sub.3x.Math.n.sub.3y+n.sub.3y.Math.n.sub.3z+n.sub.3z.Math.n.sub.2z=0.(21)
Solving for n.sub.2z, we have
(31)
n.sub.3z0. Since {right arrow over (n)}.sub.2 lies in the plane provided by {right arrow over (n)}.sub.3,
{right arrow over (n)}.sub.1={right arrow over (n)}.sub.2{right arrow over (n)}.sub.3,(23)
which also lies in the plane. More general representations may be easily developed.
(32) Referring now to
(33) Referring now to
(34) Referring now to
(35) Filter processor 105 can optionally include applying a global band-limited filter before applying the spatial-spectral filter, and applying a sliding window band-limited filter based on the longitudinal and transverse components. Laplacian processor 107 can optionally include calculating a local reference frame based on the global coordinate system and on a plane perpendicular to the pathways, and extending the pathways using automated tractography. The inversion can optionally be, but aren't limited to being, an orthotropic inversion, a monoclinic inversion, a triclinic inversion, a cubic inversion, a hexagonal inversion, a trigonal inversion, an isotropic inversion, or a tetragonal inversion.
(36) Embodiments of the present teachings are directed to computer systems such as system 100 (
(37) The present embodiment is also directed to software for accomplishing the methods discussed herein, and computer readable media storing software for accomplishing these methods. The various modules described herein can be accomplished on the same CPU, or can be accomplished on different computers. In compliance with the statute, the present embodiment has been described in language more or less specific as to structural and methodical features. It is to be understood, however, that the present embodiment is not limited to the specific features shown and described, since the means herein disclosed comprise preferred forms of putting the present embodiment into effect.
(38) Methods such as method 150 (
(39) Although the present teachings have been described with respect to various embodiments, it should be realized these teachings are also capable of a wide variety of further and other embodiments.