Nitrated lipids and methods of making and using thereof
09867795 ยท 2018-01-16
Assignee
- The Uab Research Foundation (Birmingham, AL)
- The State Of Oregon Acting By And Through The State Board Of Higher Education On Behalf Of The University Of Oregon (Eugene, OR)
- University College Cardiff Consultants Limited (Cardiff, GB)
- Morehouse School Of Medicine, Inc. (Atlanta, GA)
Inventors
- Bruce A. Freeman (Pittsburgh, PA)
- Francisco Schopfer (Pittsburgh, PA)
- Valerie O'Donnell (Penarth, GB)
- Paul Baker (Pittsburgh, PA)
- Yuqing E. Chen (Ann Arbor, MI)
- Bruce Branchaud (Eugene, OR)
Cpc classification
A61P29/00
HUMAN NECESSITIES
A61K45/06
HUMAN NECESSITIES
A61K31/201
HUMAN NECESSITIES
A61K31/575
HUMAN NECESSITIES
A61P43/00
HUMAN NECESSITIES
A61K31/202
HUMAN NECESSITIES
C07C205/50
CHEMISTRY; METALLURGY
International classification
A61K45/06
HUMAN NECESSITIES
Abstract
Described herein are nitrated lipids and methods of making and using the nitrated lipids.
Claims
1. A method for treating vascular disease in a subject in need thereof, comprising administering an effective amount of a lipid having the structure: ##STR00011## wherein: R.sup.1 is selected from the group consisting of C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, and C.sub.1-C.sub.24 alkynyl; R.sup.2, R.sup.3, R.sup.7, and R.sup.8 are each independently selected from the group consisting of hydrogen, NO.sub.2, OH, and OOH, wherein at least one of R.sup.2, R.sup.3, R.sup.7, and R.sup.8 is NO.sub.2; R.sup.4 is C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, or C.sub.1-C.sub.24 alkynyl, wherein R.sup.4 comprises a terminal COOR.sup.6 and R.sup.6 is hydrogen, C.sub.1-C.sub.24 alkyl, or a pharmaceutically acceptable counterion; R.sup.5 is hydrogen or R.sup.4 and R.sup.5 collectively form C(R.sup.9)(R.sup.10), wherein R.sup.9 is C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, or C.sub.1-C.sub.24 alkynyl and R.sup.10 is hydrogen, NO.sub.2, OH, or OOH; and n is from 1 to 24, and a therapeutic agent.
2. The method of claim 1, wherein the therapeutic agent is selected from a group consisting of antibodies, antivirals, steroidal and non-steroidal anti-inflammatories, conventional immunotherapeutic agents, cytokines, chemokines, and growth factors.
3. The method of claim 1, wherein the lipid comprises a fatty acid.
4. The method of claim 1, wherein the lipid is selected from the group consisting of glycolipids, glycerolipids, phospholipids, and cholesterol.
5. The method of claim 1, wherein the lipid is selected from the group consisting of oleic acid (18:1), 22:6, and docosahexanoic acid.
6. The method of claim 1, wherein the lipid comprises 10-nitro-9-cis,12-cis-octadecadienoic acid.
7. The method of claim 1, wherein the lipid is selected from the group consisting of linoleic acid (18:2), linolenic acid (18:3), and cholesterol linoleate.
8. The method of claim 1, wherein the lipid comprises arachidonic acid (20:4).
9. The method of claim 1, the lipid having the formula: ##STR00012## wherein: R.sup.9 is C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, or C.sub.1-C.sub.24 alkynyl and includes a terminal COOR.sup.6; and R.sup.10 is hydrogen, NO.sub.2, OH, or OOH, wherein at least one of R.sup.2, R.sup.3, R.sup.7, R.sup.8, and R.sup.10 is NO.sub.2.
10. The method of claim 1, wherein R.sup.1 is C.sub.4-C.sub.10 alkyl; R.sup.2, R.sup.8, and R.sup.10 are hydrogen; R.sup.7 is NO.sub.2; and R.sup.9 is C.sub.6-C.sub.12 alkyl.
11. The method of claim 1, wherein R.sup.3 and R.sup.8 are cis to one another, and R.sup.7 and R.sup.10 are cis to one another.
12. The method of claim 1, wherein R.sup.1 is C.sub.4-C.sub.10 alkyl; R.sup.2, R.sup.3, and R.sup.7 are hydrogen; R.sup.8 is NO.sub.2; and R.sup.4 is C.sub.6-C.sub.12 alkyl.
13. The method of claim 1, wherein the lipid comprises 12-nitro-9-cis,12-cis-octadecadienoic acid.
14. The method of claim 1, wherein R.sup.9 is C.sub.6-C.sub.12 alkyl.
15. The method of claim 1, wherein the lipid is 10-nitro-9-cis-octadecaenoic acid.
16. The method of claim 1, wherein the lipid and the therapeutic agent are administered from a group consisting of concomitantly, simultaneously, and sequentially.
17. The method of claim 1, wherein the lipid and the therapeutic agent are administered selected from a group consisting of topically, orally, by inhalation, parenterally, intravenously, intraperitoneally, intramuscularly, subcutaneously, intracavity, transdermally, intratracheally, and extracorporeally.
18. The method of claim 1, wherein the vascular disease is selected from a group consisting of cardiomyopathy, hypertension, atherosclerosis, myocardial infarction, peripheral vascular disease, coronary artery disease, heart failure and stroke.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) The accompanying drawings, which are incorporated in and constitute a part of this specification, illustrate several embodiments of the invention and together with the description, serve to explain the principles of the invention.
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DETAILED DESCRIPTION
(36) Before the present compounds, compositions, and/or methods are disclosed and described, it is to be understood that the aspects described below are not limited to specific compounds, synthetic methods, or uses as such may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular aspects only and is not intended to be limiting.
(37) In this specification and in the claims that follow, reference will be made to a number of terms that shall be defined to have the following meanings:
(38) It must be noted that, as used in the specification and the appended claims, the singular forms a, an and the include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to a pharmaceutical carrier includes mixtures of two or more such carriers, and the like.
(39) Optional or optionally means that the subsequently described event or circumstance can or cannot occur, and that the description includes instances where the event or circumstance occurs and instances where it does not. For example, the phrase optionally substituted lower alkyl means that the lower alkyl group can or can not be substituted and that the description includes both unsubstituted lower alkyl and lower alkyl where there is substitution.
(40) Ranges may be expressed herein as from about one particular value, and/or to about another particular value. When such a range is expressed, another aspect includes from the one particular value and/or to the other particular value. Similarly, when values are expressed as approximations, by use of the antecedent about, it will be understood that the particular value forms another aspect. It will be further understood that the endpoints of each of the ranges are significant both in relation to the other endpoint, and independently of the other endpoint.
(41) References in the specification and concluding claims to parts by weight, of a particular element or component in a composition or article, denotes the weight relationship between the element or component and any other elements or components in the composition or article for which a part by weight is expressed. Thus, in a compound containing 2 parts by weight of component X and 5 parts by weight component Y, X and Y are present at a weight ratio of 2:5, and are present in such ratio regardless of whether additional components are contained in the compound.
(42) A weight percent of a component, unless specifically stated to the contrary, is based on the total weight of the formulation or composition in which the component is included.
(43) Variables such as R.sup.1-R.sup.16 used throughout the application are the same variables as previously defined unless stated to the contrary.
(44) By subject is meant an individual. The subject can be a mammal such as a primate or a human. The term subject can include domesticated animals including, but not limited to, cats, dogs, etc., livestock (e.g., cattle, horses, pigs, sheep, goats, etc.), and laboratory animals (e.g., mouse, rabbit, rat, guinea pig, etc.).
(45) By contacting is meant an instance of exposure by close physical contact of at least one substance to another substance. For example, contacting can include contacting a substance, such as a pharmacologic agent, with a cell. A cell can be contacted with a test compound, for example, a nitrated lipid, by adding the agent to the culture medium (by continuous infusion, by bolus delivery, or by changing the medium to a medium that contains the agent) or by adding the agent to the extracellular fluid in vivo (by local delivery, systemic delivery, intravenous injection, bolus delivery, or continuous infusion). The duration of contact with a cell or group of cells is determined by the time the test compound is present at physiologically effective levels or at presumed physiologically effective levels in the medium or extracellular fluid bathing the cell.
(46) Treatment or treating means to administer a composition to a subject or a system with an undesired condition (e.g., inflammation) or at risk for the condition. The condition can include a disease or a predisposition to a disease. The effect of the administration of the composition to the subject can have the effect of but is not limited to reducing or preventing the symptoms of the condition, a reduction in the severity of the condition, or the complete ablation of the condition.
(47) By effective amount is meant a therapeutic amount needed to achieve the desired result or results, e.g., increasing the expression of a gene, inhibiting Ca.sup.+2 mobilization in a cell, inhibiting degranulation or CD11b expression in a neutrophil, etc.
(48) Herein, inhibition or suppression means to reduce activity as compared to a control. It is understood that inhibition or suppression can mean a slight reduction in activity to the complete ablation of all activity. An inhibitor or suppressor can be anything that reduces the targeted activity.
(49) Herein, induce means initiating a desired response or result that was not present prior to the induction step. The term potentiate means sustaining a desired response at the same level prior to the potentiating step or increasing the desired response over a period of time.
(50) The term alkyl group as used herein is a branched or unbranched saturated hydrocarbon group of 1 to 24 carbon atoms, such as methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, t-butyl, pentyl, hexyl, heptyl, octyl, decyl, tetradecyl, hexadecyl, eicosyl, tetracosyl and the like. A lower alkyl group is an alkyl group containing from one to six carbon atoms.
(51) The term alkenyl group is defined as a branched or unbranched hydrocarbon group of 2 to 24 carbon atoms and structural formula containing at least one carbon-carbon double bond.
(52) The term alkynyl group is defined as a branched or unbranched hydrocarbon group of 2 to 24 carbon atoms and a structural formula containing at least one carbon-carbon triple bond.
(53) The term ester is represented by the formula OC(O)R, where R can be an alkyl, alkenyl, or group described above.
(54) R.sup.1-R.sup.16 can, independently, possess two or more of the groups listed above. For example, if R.sup.1 is a straight chain alkyl group, one of the hydrogen atoms of the alkyl group can be substituted with an ester group. Depending upon the groups that are selected, a first group may be incorporated within second group or, alternatively, the first group may be pendant (i.e., attached) to the second group. For example, with the phrase an alkyl group comprising an ester group, the ester group may be incorporated within the backbone of alkyl group. Alternatively, the ester can be attached the backbone of the alkyl group. The nature of the group(s) that is (are) selected will determine if the first group is embedded or attached to the second group.
(55) Disclosed are compounds, compositions, and components that can be used for, can be used in conjunction with, can be used in preparation for, or are products of the disclosed methods and compositions. These and other materials are disclosed herein, and it is understood that when combinations, subsets, interactions, groups, etc. of these materials are disclosed that while specific reference of each various individual and collective combinations and permutation of these compounds may not be explicitly disclosed, each is specifically contemplated and described herein. For example, if a number of different nucleosides and polymeric substrates are disclosed and discussed, each and every combination and permutation of the nucleoside and the polymeric substrate are specifically contemplated unless specifically indicated to the contrary. Thus, if a class of molecules A, B, and C are disclosed as well as a class of molecules D, E, and F and an example of a combination molecule, A-D is disclosed, then even if each is not individually recited, each is individually and collectively contemplated. Thus, in this example, each of the combinations A-E, A-F, B-D, B-E, B-F, C-D, C-E, and C-F are specifically contemplated and should be considered disclosed from disclosure of A, B, and C; D, E, and F; and the example combination A-D. Likewise, any subset or combination of these is also specifically contemplated and disclosed. Thus, for example, the sub-group of A-E, B-F, and C-E are specifically contemplated and should be considered disclosed from disclosure of A, B, and C; D, E, and F; and the example combination A-D. This concept applies to all aspects of this disclosure including, but not limited to, steps in methods of making and using the disclosed compositions. Thus, if there are a variety of additional steps that can be performed it is understood that each of these additional steps can be performed with any specific embodiment or combination of embodiments of the disclosed methods, and that each such combination is specifically contemplated and should be considered disclosed.
(56) I. Nitrated Lipids
(57) In one aspect, the nitrated lipids described herein are lipids comprising at least one nitro group (NO.sub.2) covalently bonded to the lipid, wherein the nitrated lipid is substantially pure. The term substantially pure as defined herein is a nitrated lipid that exists predominantly as one species. In certain aspects, nitration of a lipid can produce two or more nitration products. For example, the lipid can be nitrated one or more times at different positions on the lipid. These are referred to as positional isomers. Additionally, if the lipid contains a carbon-carbon double bond, the stereochemistry about the carbon-carbon double bond can also vary. These are referred to as stereoisomers. The nitrated lipids described herein are substantially one compound (positional and stereoisomer). In one aspect, the nitrated lipid is 90%, 92%, 94%, 96%, 98%, 99%, 99.5%, or 100% one compound.
(58) In one aspect, the nitrated lipids possess at least one allylic or vinyl nitro group. The phrase allylic nitro group has the general formula CCC(NO.sub.2). The phrase vinyl nitro group has the general formula CC(NO.sub.2). In one aspect, the nitrated lipid possesses only one allylic nitro group. In another aspect, the nitrated lipid possesses only one vinyl nitro group. In another aspect, the nitrated lipid possesses one or more allylic nitro groups and/or one or more vinyl nitro groups.
(59) Lipids known in the art can be nitrated using the techniques described herein to produce nitrated lipids. In general, lipids useful for producing the nitrated lipid include, but are not limited to, fats and fat derived materials. In one aspect, the nitrated lipid can include, but is not limited to, a nitrated fatty acid or ester thereof, a nitrated fatty alcohol, or a nitrated sterol. In another aspect, the nitrated lipid can be a nitrated complex lipid. Examples of complex lipids include, but are not limited to, glycerolipids (e.g., compounds having a glycerol backbone including, but not limited to, phospholipids, glycolipids, monoglycerides, diglycerides, triglycerides) or cholesterol (e.g., cholesterols having fatty acids attached to it such as cholesterol linoleate). In one aspect, the nitrated lipid comprises a fatty acid having at least one ester linkage [OCO(R)], ether group (COR) or vinyl ether group (COCCR). Examples of lipids having at least one ether group or vinyl ether group that can be nitrated are depicted below in A and B, respectively.
(60) ##STR00001##
wherein
(61) R.sup.14 comprises C.sub.16-C.sub.22 alkyl, C.sub.16-C.sub.22 alkenyl, or C.sub.16-C.sub.22 alkynyl;
(62) R.sup.15 comprises C.sub.1-C.sub.20 alkyl, C.sub.1-C.sub.20 alkenyl, or C.sub.1-C.sub.20 alkynyl; and
(63) R.sup.1 comprises C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, or C.sub.1-C.sub.24 alkynyl.
(64) In one aspect, the nitrated lipid is composed of a fatty acid having at least one carbon-carbon double bond. In one aspect, the nitrated lipid can be a nitrated fatty acid such as, for example, 14:1, 16:1, 18:1 (oleic acid ),18:2 (linoleic acid), 18:3 (linolenic acid), 20:4 (arachidonic acid), 22:6, or docosahexanoic acid, where the first number indicates the carbon chain length of the fatty acid, and the second number indicates the number of carbon-carbon double bonds present in the fatty acid.
(65) In one aspect, the nitrated lipid can have the formula I
(66) ##STR00002##
wherein
(67) R.sup.1 comprises C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, or C.sub.1-C.sub.24 alkynyl;
(68) R.sup.2, R.sup.3, R.sup.7, and R.sup.8 comprise, independently, hydrogen, NO.sub.2, OH, or OOH;
(69) R.sup.4 comprises C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, or C.sub.1-C.sub.24 alkynyl;
(70) wherein R.sup.4 comprises a terminal COOR.sup.6 group, wherein R.sup.6 comprises hydrogen, C.sub.1-C.sub.24 alkyl, or a pharmaceutically acceptable counterion, wherein R.sup.4 optionally comprises one or more NO.sub.2, OH, or OOH groups;
(71) R.sup.5 comprises hydrogen or R.sup.4 and R.sup.5 collectively forms C(R.sup.9)(R.sup.10), wherein R.sup.9 comprises C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, or C.sub.1-C.sub.24 alkynyl, wherein R.sup.9 comprises a terminal COOR.sup.6 group, wherein R.sup.9 optionally comprises one or more NO.sub.2, OH, or OOH groups;
(72) R.sup.10 comprises hydrogen, NO.sub.2, OH, or OOH; and
(73) n is from 1 to 24;
(74) wherein the nitrated lipid comprises at least one NO.sub.2 group,
(75) wherein the nitrated lipid is substantially pure. In this aspect, the stereochemistry about the carbon-carbon double bond is substantially cis (or Z) or substantially trans (or E).
(76) In another aspect, the nitrated lipid can have the formula II
(77) ##STR00003##
wherein R.sup.3 is trans or cis to R.sup.8, and R.sup.7 is trans or cis to R.sup.10,
wherein the nitrated lipid is substantially pure. In this aspect, the stereochemistry about the carbon-carbon double bond is substantially cis (or Z) or substantially trans (or E). In one aspect, when the nitrated lipid has the formula II, R.sup.1 comprises a C.sub.4-C.sub.10 alkyl group, R.sup.2, R.sup.3, R.sup.8, and R.sup.10 are hydrogen, R.sup.7 is NO.sub.2, and R.sup.9 comprises a C.sub.6-C.sub.12 alkyl group. This class of nitrated lipids is depicted below, where the nitrated lipid has one vinyl nitro group.
(78) ##STR00004##
(79) In a further aspect, when the nitrated lipid has the formula II, R.sup.3 and R.sup.8 are cis (Z) to one another, and R.sup.7 and R.sup.10 are cis (Z) to one another. In another aspect, the nitrated lipid is 10-nitro-9-cis,12-cis-octadecadienoic acid, which is depicted in
(80) In another aspect, when the nitrated lipid has the formula II, R.sup.1 comprises a C.sub.4-C.sub.10 alkyl group, R.sup.2, R.sup.3, R.sup.7, and R.sup.10 are hydrogen, R.sup.8 is NO.sub.2, and R.sup.9 comprises a C.sub.6-C.sub.12 alkyl group. This class of nitrated lipids is depicted below, where the nitrated lipid has one vinyl nitro group.
(81) ##STR00005##
(82) In a further aspect, R.sup.3 and R.sup.8 are cis (Z) to one another and R.sup.7 and R.sup.10 are cis (Z) to one another. In another aspect, the nitrated lipid is 12-nitro-9-cis,12-cis-octadecadienoic acid, which is depicted in
(83) In another aspect, the nitrated lipid has the formula III
(84) ##STR00006##
wherein
(85) R.sup.1 comprises C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, or C.sub.1-C.sub.24 alkynyl;
(86) R.sup.2 and R.sup.12 comprise, independently, hydrogen, NO.sub.2, OH, or OOH; and
(87) R.sup.13 comprises C.sub.1-C.sub.24 alkyl, C.sub.1-C.sub.24 alkenyl, or C.sub.1-C.sub.24 alkynyl, wherein R.sup.13 comprises a terminal COOR.sup.6 group, wherein R.sup.6 comprises hydrogen, C.sub.1-C.sub.24 alkyl, or a pharmaceutically acceptable counterion, wherein R.sup.13 optionally comprises one or more
(88) NO.sub.2, OH, or OOH groups;
(89) wherein the compound comprises at least one NO.sub.2 group,
(90) wherein the nitrated lipid is substantially pure.
(91) In another aspect, when the nitrated lipid has the formula III, R.sup.1 comprises a C.sub.4-C.sub.10 alkyl group, R.sup.2 is hydrogen, R.sup.12 is NO.sub.2, and R.sup.13 comprises a C.sub.6-C.sub.12 alkyl group. This class of nitrated lipids is depicted below, where the nitrated lipid has one allylic nitro group.
(92) ##STR00007##
In this aspect, R.sup.1 comprises a C.sub.4-C.sub.10 alkyl group, R.sup.2 is NO.sub.2, R.sup.12 is hydrogen, and R.sup.13 comprises a C.sub.6-C.sub.12 alkyl group. In one aspect, the nitrated lipid is 9-nitro-10,12-cis-octadecadienoic acid; 9-nitro-10,12-trans-octadecadienoic acid; 13-nitro-10, 12-cis-octadecadienoic acid; or 13-nitro-10, 12-trans-octadecadienoic acid.
(93) Methods for preparing the nitrated lipids described herein are described below and in the Examples section.
(94) II. Synthesis of Nitrated Lipids
(95) Described herein are methods for preparing nitrated lipids. In one aspect, the method comprises (a) reacting an unsaturated lipid with a mercuric salt, a selenium compound, and a nitrating compound to produce a first intermediate, and (b) reacting the first intermediate with an oxidant.
(96) Any of the lipids described above can be used to produce the nitrated lipids described herein. In one aspect, any unsaturated lipid having at least one carbon-carbon double bond can be used in this aspect to produce nitrated lipids.
(97) In one aspect, step (a) can be performed in situ without isolation of the first intermediate. In another embodiment, the first intermediate can be trapped prior to step (b). The mercuric salt, a selenium compound, and a nitrating compound can be added in any order to the unsaturated lipid.
(98) The selenium compound is any compound that is capable of reacting or interacting with the unsaturated group present in the lipid. In one aspect, when the unsaturated lipid possesses a carbon-carbon double bond, the selenium compound can form a three-membered ring intermediate, which is depicted, for example, in
(99) The mercuric salt used in the methods described herein can be any mercuric salt known in the art. Not wishing to be bound by theory, it is believed that the mercuric salt facilitates the formation of the selenium three-membered ring intermediate. In one aspect, the mercuric salt comprises HgCl.sub.2, Hg(NO.sub.3).sub.2, or Hg(OAc).sub.2.
(100) The nitrating compound is any compound that provides a source of NO.sub.2.sup. ions in solution. Not wishing to be bound by theory, it is believed that NO.sub.2.sup. reacts with the selenium intermediate formed upon the reaction between the unsaturated lipid and selenium compound by displacing the leaving group present in the intermediate.
(101) The relative amounts of unsaturated lipid, selenium compound, mercuric salt, and nitrating compound can vary depending upon the specific reagents that are selected and reaction conditions. In one aspect, an equimolar amount or slight excess thereof of selenium compound, mercuric salt, and nitrating compound relative to the unsaturated lipid can be used. Step (a) is generally performed in a solvent, such as, for example, a polar or unpolar organic solvent. Examples of solvents useful herein include, but are not limited to, nitriles, ethers, esters, alkanes, alcohols, or combinations thereof. In one aspect, the solvent used in step (a) can be THF/acetonitrile. Step (a) can be performed at various temperatures depending upon the starting materials that are selected. In one aspect, the step (a) can be performed at room temperature.
(102) By varying the reaction conditions in step (a), it is possible to increase the overall yield of the nitrated lipids as well as reduce the number of different types of nitrated lipids. In one aspect, the step (a) can be performed under anaerobic conditions. In another aspect, step (a) can be performed under anhydrous conditions. In a further aspect, step (a) is performed under anaerobic and anhydrous conditions.
(103) After step (a), the intermediate that is produced is reacted with an oxidant to convert the intermediate to the nitrated lipid (step (b)). Not wishing to be bound by theory, the oxidant oxidizes the selenium compound to produce a selenium-oxo group, which rearranges to produce the nitrated lipid. One aspect of this mechanism is depicted in
(104) In one aspect, the unsaturated lipid comprises oleic acid, linoleic acid, linolenic acid, arachidonic acid, eicosapentaenoic acid, or docosahexanoic acid, the mercuric salt comprises HgCl.sub.2, the selenium compound comprises PhSeBr, the nitrating compound comprises NaNO.sub.2, and the oxidant comprises H.sub.2O.sub.2. In a further aspect, step (a) is performed under anaerobic and anhydrous conditions.
(105) After step (b), one nitrated lipid or mixture of two or more nitrated lipid positional or stereoisomers may be present depending upon reagents and starting materials that are selected. In one aspect, if two or more nitrated lipids are present, each of the nitrated lipids can be separated to produce substantially pure nitrated lipid. In one aspect, the mixture of two or more nitrated lipids can be separated by chromatography. For example liquid chromatography, thin layer chromatography or column chromatography using silicic acid, silical gel or other adsorbents useful for lipid separations, can be used to separate the nitrated lipids. The solvent system used in this aspect will vary depending upon the type and number of nitrated lipids to be separated and can be determined by one of ordinary skill in the art.
(106) Also described herein are methods for stabilizing nitrated lipids, comprising placing the nitrated lipid in a hydrophobic medium. The nitrated lipids are generally stable oils and can be stored indefinitely in organic solvents under anaerobic and anhydrous conditions and reduced temperature. Alternatively, the salts of the nitrated lipids are stable and can be further processed into a formulation. Alternatively, the more stable nitrohydroxy derivative can be formed under alkaline conditions, which at more neutral pH reversibly yields the parent nitrated fatty acid. Alternatively, the nitrated lipids can be placed in detergent emulsions or liposomes, which can be later administered to a subject.
(107) III. Nitro/Hydroxy Lipids and Synthesis Thereof
(108) In one aspect, described herein are lipids comprising at least one nitro group and at least one hydroxyl group, wherein the compound is substantially pure. In one aspect, the nitro group and the hydroxyl group are on adjacent carbon atoms. In this aspect, the lipid contains the fragment HOCCNO.sub.2. In another aspect, the nitro/hydroxy lipid has the formula X or XI
(109) ##STR00008##
wherein R.sup.1 comprises a C.sub.1-C.sub.24 alkyl group, a C.sub.1-C.sub.24 alkenyl group, or C.sub.1-C.sub.24 alkynyl group, and R.sup.9 comprises a terminal COOR.sup.6 group, wherein R.sup.6 comprises hydrogen, C.sub.1-C.sub.24 alkyl, or a pharmaceutically acceptable counterion, and p is from 1 to 12. In a further aspect, the nitro/hydroxy lipid has the formula XII or XIII
(110) ##STR00009##
wherein R.sup.1 comprises a C.sub.1-C.sub.24 alkyl group, a C.sub.1-C.sub.24 alkenyl group, or C.sub.1-C.sub.24 alkynyl group, and R.sup.9 comprises a terminal COOR.sup.6 group, wherein R.sup.6 comprises hydrogen, C.sub.1-C.sub.24 alkyl, or a pharmaceutically acceptable counterion, and m is from 0 to 12.
(111) Any of the nitrated lipids can be converted to the corresponding nitro/hydroxyl compound. In one aspect, the nitrated lipid is placed in an aqueous base. Not wishing to be bound by theory, it is believed that the nitrated lipid undergoes a Michael addition reaction with water followed by deprotonation to produce the nitro/hydroxyl lipid. This mechanism is depicted below.
(112) ##STR00010##
The nitro/hydroxyl lipid can be subsequently isolated by solvent extraction followed by purification using techniques known in the art (e.g., HPLC or thin layer chromatography).
IV. Methods of Use
(113) Delivery
(114) As used throughout, administration of any of the nitrated lipids described herein can occur in conjunction with other therapeutic agents. Thus, the nitrated lipids can be administered alone or in combination with one or more therapeutic agents. For example, a subject can be treated with a nitrated lipid alone, or in combination with chemotherapeutic agents, antibodies, antivirals, steroidal and non-steroidal anti-inflammatories, conventional immunotherapeutic agents, cytokines, chemokines, and/or growth factors. Combinations may be administered either concomitantly (e.g., as an admixture), separately but simultaneously (e.g., via separate intravenous lines into the same subject), or sequentially (e.g., one of the compounds or agents is given first followed by the second). Thus, the term combination or combined is used to refer to either concomitant, simultaneous, or sequential administration of two or more agents. Furthermore, two or more nitrated lipids described herein can be administered to a subject concomitantly, simultaneously, or sequentially.
(115) The nitrated lipids can be administered in a number of ways depending on whether local or systemic treatment is desired, and on the area to be treated. Administration may be topically (including opthamalically, vaginally, rectally, intranasally), orally, by inhalation, or parenterally, for example by intravenous drip, subcutaneous, intraperitoneal or intramuscular injection. The disclosed compounds can be administered intravenously, intraperitoneally, intramuscularly, subcutaneously, intracavity, transdermally, intratracheally, extracorporeally, or topically (e.g., topical intranasal administration or administration by inhalant). As used herein, topical intranasal administration means delivery of the compositions into the nose and nasal passages through one or both of the nares and can comprise delivery by a spraying mechanism or droplet mechanism, or through aerosolization of the nucleic acid or vector. The latter can be effective when a large number of subjects are to be treated simultaneously. Administration of the compositions by inhalant can be through the nose or mouth via delivery by a spraying or droplet mechanism. Delivery can also be directly to any area of the respiratory system (e.g., lungs) via intubation.
(116) Parenteral administration of the composition, if used, is generally characterized by injection. Injectables can be prepared in conventional forms, either as liquid solutions or suspensions, solid forms suitable for solution of suspension in liquid prior to injection, or as emulsions. A more recently revised approach for parenteral administration involves use of a slow release or sustained release system such that a constant dosage is maintained. See, e.g., U.S. Pat. No. 3,610,795, which is incorporated by reference herein in its entirety for the methods taught.
(117) The compositions may be in solution or in suspension (for example, incorporated into microparticles, liposomes, or cells). These compositions may be targeted to a particular cell type via antibodies, receptors, or receptor ligands. The following references are examples of the use of this technology to target specific proteins to given tissue (Senter, et al., Bioconjugate Chem., 2:447-451, (1991); Bagshawe, K. D., Br. J. Cancer, 60:275-281, (1989); Bagshawe, et al., Br. J. Cancer, 58:700-703, (1988); Senter, et al., Bioconjugate Chem., 4:3-9, (1993); Battelli, et al., Cancer Immunol. Immunother., 35:421-425, (1992); Pietersz and McKenzie, Immunolog. Reviews, 129:57-80, (1992); and Roffler, et al., Biochem. Pharmacol, 42:2062-2065, (1991)). Vehicles such as stealth and other antibody conjugated liposomes (including lipid mediated drug targeting to colonic carcinoma), receptor mediated targeting of DNA through cell specific ligands, lymphocyte directed tumor targeting, and highly specific therapeutic retroviral targeting of murine glioma cells in vivo. In general, receptors are involved in pathways of endocytosis, either constitutive or ligand induced. These receptors cluster in clathrin-coated pits, enter the cell via clathrin-coated vesicles, pass through an acidified endosome in which the receptors are sorted, and then either recycle to the cell surface, become stored intracellularly, or are degraded in lysosomes. The internalization pathways serve a variety of functions, such as nutrient uptake, removal of activated proteins, clearance of macromolecules, opportunistic entry of viruses and toxins, dissociation and degradation of ligand, and receptor-level regulation. Many receptors follow more than one intracellular pathway, depending on the cell type, receptor concentration, type of ligand, ligand valency, and ligand concentration. Molecular and cellular mechanisms of receptor-mediated endocytosis has been reviewed (Brown and Greene, DNA and Cell Biology 10:6, 399-409 (1991)).
(118) The exact amount of the compositions required will vary from subject to subject, depending on the species, age, weight and general condition of the subject, the severity of the disorder being treated, the particular nucleic acid to be targeted, its mode of administration and the like. Thus, it is not possible to specify an exact amount for every composition. However, an appropriate amount can be determined by one of ordinary skill in the art using only routine experimentation given the teachings herein. In one aspect, the amount of nitrated lipid that is administered can be from 1 nM to 1 mM, 10 nM to 1 mM, 20 nM to 1 mM, 50 nM to 1 mM, 100 nM to 1 mM, 200 nM to 1 mM, 300 nM to 1 mM, or 500 nM to 1 mM. The time at which the nitrated lipids can be administered will also vary depending upon the subject, the disorder, mode of administration, etc. The nitrated lipid can be administered to the subject prior to the onset of inflammation or during a time when the subject is experiencing inflammation. In one aspect, the nitrated lipid can be administered within 24 hours, 20 hours, 16 hours, 12 hours, 8 hours, 4 hours, 2 hours, 1 hour, or 30 minutes before inflammation occurs or 10 hours, 20 hours, 30 hours, 40 hours, 60 hours, 80 hours, 100 hours, or 120 hours after the onset of the inflammation.
(119) Pharmaceutically Acceptable Carriers
(120) The nitrated lipids can be used therapeutically in combination with a pharmaceutically acceptable carrier. Pharmaceutical carriers are known to those skilled in the art. These most typically would be standard carriers for administration of drugs to humans, including solutions such as sterile water, saline, and buffered solutions at physiological pH. The compositions can be administered intramuscularly or subcutaneously. Other compounds will be administered according to standard procedures used by those skilled in the art.
(121) Pharmaceutical compositions may include carriers, thickeners, diluents, solvents, buffers, preservatives, surface active agents and the like in addition to the molecule of choice. Pharmaceutical compositions may also include one or more active ingredients such as antimicrobial agents, anti-inflammatory agents, anesthetics, and the like.
(122) Preparations for parenteral administration include sterile aqueous or non-aqueous solutions, suspensions, and emulsions. Examples of non-aqueous solvents are propylene glycol, polyethylene glycol, vegetable oils such as olive oil, and injectable organic esters such as ethyl oleate. Aqueous carriers include water, alcoholic/aqueous solutions, emulsions or suspensions, including saline and buffered media. Parenteral vehicles include sodium chloride solution, Ringer's dextrose, dextrose and sodium chloride, lactated Ringer's, or fixed oils. Intravenous vehicles include fluid and nutrient replenishers, electrolyte replenishers (such as those based on Ringer's dextrose), and the like. Preservatives and other additives may also be present such as, for example, antimicrobials, anti-oxidants, chelating agents, and inert gases and the like.
(123) Formulations for topical administration may include ointments, lotions, creams, gels, drops, suppositories, sprays, liquids and powders. Conventional pharmaceutical carriers, aqueous, powder or oily bases, thickeners and the like may be necessary or desirable.
(124) Compositions for oral administration include powders or granules, suspensions or solutions in water or non-aqueous media, capsules, sachets, or tablets. Thickeners, flavorings, diluents, emulsifiers, dispersing aids or binders may be desirable.
(125) Some of the nitrated lipids may potentially be administered as a pharmaceutically acceptable acid- or base-addition salt, formed by reaction with inorganic acids such as hydrochloric acid, hydrobromic acid, perchloric acid, nitric acid, thiocyanic acid, sulfuric acid, and phosphoric acid, and organic acids such as formic acid, acetic acid, propionic acid, glycolic acid, lactic acid, pyruvic acid, oxalic acid, malonic acid, succinic acid, maleic acid, and fumaric acid, or by reaction with an inorganic base such as sodium hydroxide, ammonium hydroxide, potassium hydroxide, and organic bases such as mono-, di-, trialkyl and aryl amines and substituted ethanolamines. In another aspect, the nitrated lipid is in the form of the sodium or potassium salt. In another embodiment, the nitrated lipids can be converted to the corresponding pharmaceutically-acceptable ester such as, for example, the methyl ester.
(126) Therapeutic Uses
(127) The methods described herein contemplate the use of single or mixtures of two or more nitrated or nitro/hydroxyl lipids. In one aspect, disclosed are methods for reducing or preventing inflammation in a subject with inflammation or at risk for inflammation, comprising administering an effective amount of any of the nitrated lipids described herein, wherein the nitrated lipid reduces or prevents the inflammation in the subject. Examples of inflammation include, but are not limited to, pulmonary inflammation, vascular inflammation, renal inflammation, inflammation of the central nervous system, hepatic inflammation, or splanchnic inflammation. The inflammation can be associated with an inflammatory disease including, but not limited to, systemic lupus erythematosus, Hashimoto's disease, rheumatoid arthritis, graft-versus-host disease, Sjgren's syndrome, pernicious anemia, Addison disease, scleroderma, Goodpasture's syndrome, Crohn's disease, autoimmune hemolytic anemia, myasthenia gravis, multiple sclerosis, Alzheimer's disease, amyotrophic lateral sclerosis, Basedow's disease, thrombopenia purpura, insulin-dependent diabetes mellitus, allergy; asthma, inflammatory bowel disease, cancer, ulcerative colitis, scleroderma, cardiomyopathy, atherosclerosis, hypertension, sickle cell disease, or respiratory distress syndrome of neonate and adults. In another aspect, the inflammation can be caused by an organ transplantation, respiratory distress, ventilator induced lung injury, ischemia reperfusion, hemorrhagic shock, or sepsis. In one aspect, when the pulmonary inflammation is caused by respiratory distress or sepsis, the nitrated lipids can reduce or prevent the accumulation of alveolar fluid in a subject.
(128) In one aspect, the nitrated lipids described herein can modulate the expression or activity of one or more nucleic acids that encode one or more inflammatory-related or cell signaling polypeptides. The term modulate is defined herein as the ability of the nitrated lipid to decrease or increase the expression or activity relative to a control. The control can be either the amount of expression or activity in the absence of a nitrated lipid, or in the presence of solvent or non-nitrated parent lipid used for the synthesis of the nitrated lipid derivative. Alternatively, the control can be the amount of expression or activity before or after the period use (i.e., administration of the nitrated lipid). The term inflammatory-related polyepetide is defined herein as any polypeptide that can induce or potentiate an inflammatory response. Examples of genes that can be modulated by the nitrated lipids described herein and inflammatory-related polypeptides include, but are not limited to, prostaglandin H synthase-2, gamma glutamyl cysteine synthase, low density lipoprotein receptor, vascular endothelial growth factor, tocopherol binding protein, a heat shock protein (e.g., 10, 40, 60, 70, 90 kD ), prostaglandin receptor EP4, a protein tyrosine phosphatase, a Ca, Na, or K ATPase, a G-protein signaling regulator (e.g., 24 kD), a vasoactive intestinal peptide, a guanine nucleotide exchange factor, a bone morphogenetic protein, an aromatic-inducible cytochrome P450s, an ADP-ribosyltransferase, endothelin-1, a vascular cell adhesion molecule-1, an intercellular adhesion molecule-1, a tumor necrosis factor alpha receptor, an interleukin 1 beta receptor, a transforming growth factor beta receptor, an advanced glycation endproduct-specific receptor, a cAMP phosphodiesterase, a cGMP phosphodiesterase, a cyclin-dependent kinase, cathepsins B and D, a connective tissue growth factor, actin, myosin, a tubulin gene, a c-src tyrosine kinase, an insulin growth factor binding protein, a cysteine-rich angiogenic inducer 61, thrombospondin-1, a cadherin-associated protein beta, heme oxygenase-1, one or more of the genes listed in Table 5, one more of the genes listed in Table 6, one or more of the genes listed in Table 7, or a combination thereof. In one aspect, the nitrated lipid can modulate the nucleic acid 1.5 fold, 2 fold, 3-fold, 5-fold, 10-fold, 20-fold, 30-fold, 40-fold, 50-fold, 75-fold, 100-fold, 125-fold, 150-fold, or greater.
(129) The nitrated lipids described herein can be used to mediate receptors in a cell in order to reduce or prevent inflammation in a subject. In one aspect, described herein are methods for inducing or potentiating peroxisome proliferator activated receptor (PPAR) activity, comprising contacting a cell comprising at least one PPAR receptor with one or more nitrated lipids under conditions that allow the compound to induce or potentiate the activity of the PPAR receptor. The PPAR receptor can be , , or . Alternatively, other lipid receptors that nitrated lipids can bind to, be transported by, and mediate include the family of fatty acid binding proteins, G protein-coupled receptors and cis-retinoic acid binding protein. Not wishing to be bound by theory, it is believed that activation of cell receptors such as, for example, PPAR, can modulate the tissue expression and activity of inflammatory-related genes. A number of cell-types can be contacted with the nitrated lipids described herein in order to reduce or prevent inflammation in a subject. Examples of such cells include, but are not limited to the constituent cells of lung, airways, nasal passages, eyes, auditory system, liver, spleen, kidney, intestine, colon, genito-urinary tract, heart, brain, spinal cord, muscle, bone, connective tissue, blood and reticuloendothelial system and nervous tissue.
(130) In another aspect, the nitrated lipids described herein can induce the expression or potentiate the activity of an inflammatory-related polypeptide when a cell comprising at least one nucleic acid that encodes the inflammatory-related polypeptide is contacted with a nitrated lipid under conditions that allow the compound to induce the expression or potentiate the activity of the inflammatory-related polypeptide. In one aspect, the following expressions or activities can be induced or potentiated with the nitrated lipids described herein: 1. Modification of downstream signaling regulated by small G-proteins. 2. Increased phosphorylation and activation of c-Jun N-terminal kinase. 3. Increased the phosphorylation and activation of the transcription factor c-Jun. 4. Modification of activator protein-1 binding and activator protein-1 mediated gene expression 5. Increased phosphorylation and activation of extracellular-signal regulated kinase. 6. Increased phosphorylation and activation of the transcription factor Elk-1. 7. Modification of binding to serum response element (SRE) and SRE mediated gene expression. 8. Increased synthesis of the transcription factor c-Fos. 9. Affect the nuclear translocation of the transcription factor Nrf-2 (Nuclear factor erythroid 2 related factor 2). 10. Modification of the electrophilic response element (also known as antioxidant response element) binding and the electrophilic response element mediated gene expression. 11. Modification of p38 mitogen activated protein kinase activation. 12. Modification of the nuclear translocation of the transcription factor p65. 13. Modification of nuclear factor-kappa B binding and nuclear factor kappa B mediated gene expression.
(131) In other aspects, any of the nitrated lipids described herein can reduce a cell's response to an inflammatory stimulus. In one aspect, the cell can be a neutrophil, monocyte, or macrophage. For example, the nitrated lipids can inhibit neutrophil, monocyte, or macrophage degranulation (e.g., azurophilic) or release of hydrolases and proteases following degranulation, neutrophil, monocyte, or macrophage O.sub.2.sup. formation, expression of CD11b expression in a neutrophil, monocyte, or macrophage, and fMLP-induced Ca.sup.+2 influx in a neutrophil, monocyte, or macrophage upon contact of the neutrophil, monocyte, or macrophage with the nitrated lipid. In these aspects, the neutrophil, monocyte, or macrophage can be contacted with the nitrated lipid in vivo, in vitro, or ex vivo.
(132) In one aspect, described herein are methods for regulating the activity of a protein kinase signaling pathway, comprising reacting a kinase with a nitro lipid described herein. In another aspect, the nitrated lipids described herein can regulate the activity of a thiol-dependent enzyme in a cell by contacting the cell with a nitrated lipid of the present invention. The cell can be contacted with the nitrated lipid, in vivo, in vitro, or ex vivo. For example, nitroalkenes inhibit enzymes that depend on thiols as catalytic residues. Not wishing to be bound by theory, it is believed that the thiol can react with the nitrated lipid via a Michael addition reaction. Via this property, nitroalkenes also serve a potent stimuli of thiol modification-dependent protein kinases and their downstream cell signaling pathways. In this regard, a variety of cell protein kinases are activated by nitroalkenes and the associated thiol-dependent phosphoprotein phosphatases can also be inhibited by thiol alkylation. In one aspect, any thiol-dependent structural, cell signaling and catalytic protein can be regulated by the nitrated fatty acid compounds described herein.
(133) In another aspect, the nitrated lipids described herein can control protein trafficking in cells by serving as a thiol-attached hydrophobic membrane trafficking agent for proteins to which they attach. Thus, the alkylation of proteins by membrane-avid nitrated fatty acids will facilitate the localization of proteins containing hydrophobic nitrated fatty acid-amino acid adducts to cytosol, plasma membrane and organelle (nucleus, endoplasmaic reticulum, mitochondrial, golgi, secretory vesicles) membranes.
(134) In another aspect, the nitrated lipids described herein can inhibit platelet function in a subject upon administration of the nitrated lipid to the subject. In one aspect, the nitrated lipids can inhibit thrombin- or other stimuli-induced platelet aggregation by attenuating cAMP-dependent Ca.sup.+2 mobilization and activation of the phosphorylation of vasodilator-stimulated phosphoprotein (VASP).
(135) In another aspect, the nitrated lipids described herein can be used to induce or potentiate tissue repair in a subject suffering from inflammation. Not wishing to be bound by theory, it is believed that the nitrated lipids can down regulate events that result in inflammation or the impairment of vascular function and blood flow.
(136) In another aspect, the nitrated lipids described herein can promote satiety in a subject upon administration of the nitrated lipid to the subject.
(137) In another aspect, the nitrated lipids described herein can treat cancer upon administering an effective amount of the nitrated lipid to the subject. Not wishing to be bound by theory, it is believed that the nitrated lipids directly stimulate tumor cell killing and potentiate the killing of tumor cells by standard chemotherapeutic drugs. The cell necrosis and apoptosis-inducing activity is believed to be the result of nitrated lipid/PPAR ligand activity (e.g., PPAR activation), as well as by stimulating other cell signaling pathways noted above that mediate cell growth, cell differentiation and death signaling pathways.
(138) In another aspect, the nitrated lipids set forth herein can act as nitric oxide (NO) donors, as described in the Examples. Therefore, the nitrated lipids described herein can be used to administer NO to a subject and/or treat a NO-related condition in a subject. These conditions include, but are not limited to, atherosclerosis, myocardial infarction, peripheral vascular disease, coronary artery diseases, heart failure, stroke, essential hypertension, diabetes mellitus, pre-eclampsia, erectile dysfunction, impotence, diabetic nephropathy, inflammatory glomerular diseases, acute renal failure, chronic renal failure, inflammation, bacterial infection, septic shock, respiratory distress syndromes, arthritis, cancer, impetigo, epidermolysis bullosa, eczema, neurodermatitis, psoriasis, pruritis, erythema, hidradenitis suppurativa warts, diaper rash and jock itch.
(139) In another aspect, described herein are methods for detecting inflammation in a subject, comprising (a) measuring the amount of a nitrated lipid present in the subject and (b) comparing the amount of nitrated lipid in the subject to the amount of nitrated lipid present in a subject that is not experiencing any inflammation. In one aspect, patients with cardiovascular disease have increased amounts of nitrated fatty acid. Based on the presence of nitrated lipids, the detection of increased levels of nitrated fatty acids in blood, tissues and bodily fluids can serve to diagnose the occurrence, progression and/or resolution of the inflammatory process.
EXAMPLES
(140) The following examples are put forth so as to provide those of ordinary skill in the art with a complete disclosure and description of how the compounds, compositions, and methods described and claimed herein are made and evaluated, and are intended to be purely exemplary and are not intended to limit the scope of what the inventors regard as their invention. Efforts have been made to ensure accuracy with respect to numbers (e.g., amounts, temperature, etc.) but some errors and deviations should be accounted for. Unless indicated otherwise, parts are parts by weight, temperature is in C. or is at ambient temperature, and pressure is at or near atmospheric. There are numerous variations and combinations of reaction conditions, e.g., component concentrations, desired solvents, solvent mixtures, temperatures, pressures and other reaction ranges and conditions that can be used to optimize the product purity and yield obtained from the described process. Only reasonable and routine experimentation will be required to optimize such process conditions.
Example 1
(141) Materials. Linoleic acid was purchased from Nu-Check Prep (Elysian, Minn.). Phenylselenium bromide, HgCl.sub.2, NaNO.sub.2, anhydrous tetrahydrofuran, N,N-diisopropylethylamine (99.5%) and acetonitrile were obtained from Sigma/Aldrich (St Louis, Mo.). Silica gel HF thin layer chromatography (TLC) plates (250 m) were from Analtech (Newark, Del.). Pentafluorobenzyl bromide and methanolic BF.sub.3 was from Pierce (Rockford, Ill.). Solvents used in synthesis were HPLC grade or better and were purchased from Fisher Scientific (Fairlawn, N.J.). Solvents used for mass spectrometric analyses from Burdick and Jackson (Muskigon, Mich.). [.sup.13C]Linoleic acid was from Spectra Stable Isotopes (Columbia, Md.) and [.sup.15N]NaNO.sub.2 was from Cambridge Isotope Laboratories, Inc. (Andover, Mass.). [.sup.14N]LNO.sub.2, [.sup.13C]LNO.sub.2 and [.sup.15N]LNO.sub.2 positional isomers were synthesized as described previously for nitrated fatty acids.
(142) LNO.sub.2 synthesis. Linoleic acid/HgCl.sub.2/phenylselenium bromide/NaNO.sub.2 (1:1.3:1:1, mol/mol) were combined in THF/acetonitrile (1:1, v/v) with a final concentration of 0.15 M linoleic acid. Care was taken to use anhydrous solvents, dry glassware and reagents that had been dried in vacuo over phosphorus pentoxide. The reaction mixture was stirred (4 h, 25 C.) followed by centrifugation to sediment the precipitate. The supernatant was recovered, the solvent evaporated in vacuo, the product mixture redissolved in THF (original volume) and the temperature reduced to 0 C. A 10-fold molar excess of H.sub.2O.sub.2 was slowly added with stirring to the mixture then allowed to rest in an ice bath for 20 min followed by a gradual warming to room temp (45 min). The product mixture was extracted with equal parts saturated NaCl and diethyl ether, the organic phase collected, the solvent removed in vacuo and the lipid products were resolvated in CH.sub.2Cl.sub.2/CH.sub.3OH (4:1, v/v). A mixture of LNO.sub.2 positional isomers were initially separated from the product mixture by preparative TLC using silica gel HF plates developed twice in a solvent system consisting of hexane/ether/acetic acid (70:30:1, v/v). Regions of silica containing LNO.sub.2 were scraped, extracted (29) and stored in CH.sub.3OH under argon at 80 C. Under these conditions, purified nitrated linoleic acid is stable for >3 months. Large scale purification of the individual positional isomers was performed by preparative HPLC using a 25021.2 mm C18 Phenomenex Luna column (5 m particle size). Lipids were eluted from the column using a gradient solvent system consisting of A (H.sub.2O containing 0.1% NH.sub.4OH) and B (CNCH.sub.3 containing 0.1% H.sub.2O) under the following conditions: 20-80% B (linear increase, 45 min), 80% B (2 min), 20% B (5 min). Fractions were collected as positional isomers eluted, the solvent removed in vacuo and the lipids were stored in CH.sub.3OH under argon at 80 C. Stable isotopes of LNO.sub.2, specifically [.sup.13C]LNO.sub.2 and [.sup.15N]LNO.sub.2, were synthesized as above, except that [.sup.13C]linoleic acid or [.sup.15N]NaNO.sub.2 were substituted in the synthetic scheme.
(143) In an alternate aspect, nitrated fatty acids can be separated and purified from oils such as, for example, fish oil, soy bean oil, and olive oil. For example, silica gel and silicic acid columns can be used to fractionate the nitro-fatty acids, followed by preparative TLC or HPLC to separate the different nitrated fatty acids. Nitro-oleate is the predominant (>90%) marine and plant-nitroalkene.
(144) Spectral analysis of LNO.sub.2. Initial concentrations of synthetic LNO.sub.2 preparations were measured by chemiluminescent nitrogen analysis (Antek Instruments, Houston, Tex.) using caffeine as a standard. This data was utilized to determine dilution concentrations for subsequent spectral analysis. The extinction coefficients () for LNO.sub.2 and the isotopic derivatives [.sup.13C]LNO.sub.2 and [.sup.15N]LNO.sub.2 were measured using a UV-VIS spectrophotometer (Shimadzu, Japan) set to measure absorbance at 329 nm, the absorbance maximum specific to LNO.sub.2 as compared to linoleic acid. Absorbance values for increasing concentrations of LNO.sub.2, [.sup.15N]LNO.sub.2 or [.sup.13C]LNO.sub.2 in MeOH containing 20 mM NaOH were plotted against concentration to calculate slope/extinction coefficient.
(145) Nitrated linoleic acid displays a characteristic absorption profile and maximum, permitting determination of an extinction coefficient and providing a facile method for measuring concentrations of synthetic LNO.sub.2. This species displays a unique absorbance maximum at 329 nm, compared with linoleic acid (
(146) Red blood cell and plasma lipid isolation and extraction. Peripheral blood from healthy human volunteers was collected by venipuncture in heparinized tubes, centrifuged (1200g; 10 min) and plasma isolated from red cell pellets from which the buffy coat was removed. Crude lipid extracts were prepared from packed red cells and plasma by the method of Bligh and Dyer (29) and analyzed by mass spectrometry. Care was taken to avoid acidification during all steps of plasma fractionation and lipid extraction to prevent artifactual lipid nitration due to the presence of endogenous NO.sub.2.sup.. Extracts from red cells were analyzed by mass spectrometry; however, lipid extracts from plasma were first fractionated by TLC to separate LNO.sub.2 from the bulk of neutral lipids present in plasma, minimizing ionization dampening during LNO.sub.2 analysis by mass spectrometry. TLC plates were developed twice in a solvent system consisting of hexane:ether:acetic acid (70:30:1, v/v), and regions of silica containing LNO.sub.2, identified by comparing to the migration of synthetic standards, were scraped and extracted (29). To measure the esterified LNO.sub.2 content in red cell membranes and plasma lipoproteins, lipid extracts were first hydrolyzed (30), fractionated by TLC and analyzed by mass spectrometry.
(147) In
(148) Analysis of synthetic LNO.sub.2 methyl and pentafluorobenzyl esters by gas chromatography mass spectrometry. Methyl ester-derivatives of synthetic LNO.sub.2 isomers were analyzed by gas chromatography mass spectrometry (GC-MS) in both positive and negative ion modes. Electron-impact (EI) ionization was used to identify and characterize the fragmentation pattern of the two main positional isomers of LNO.sub.2 methyl esters. Methyl esters were prepared by drying LNO.sub.2 under a stream of nitrogen and redissolving in methanolic BF.sub.3 (14% BF.sub.3, 86% CH.sub.3OH); with the methylation reaction proceeding for 8 min at 60 C. Methyl esters were then extracted with hexane, washed twice with saturated saline, redissolved in undecane and analyzed by electron-impact GC-MS. EI GC-MS was performed using a Saturn 2000 mass spectrometer coupled with a Varian 3800 gas chromatograph. Samples were ionized by electron impact at +70 eV. Methyl ester-derivatized LNO.sub.2 isomers were resolved by GC using a CP-7420 capillary column (0.25 mm ID, 100 m fused silica, Varian, Palo Alto, Calif.) with the following temperature gradient: 60 C. (2 min); 60 to 120 C. at 20 C./min, held for 2 min; 120 to 270 C. at 20 C./min, held for 20 min. Helium was used as the carrier gas.
(149) Due to the low sensitivity of positive ion GC-MS to LNO.sub.2, negative ion chemical ionization (NICI) was used to characterize pentafluorobenzyl (PFB) esters of synthetic LNO.sub.2 and detect LNO.sub.2 species in vivo. PFB esters of synthetic LNO.sub.2, red cell and plasma lipids were prepared (29), with biological lipids first partially purified by TLC as previously noted. Lipids were then subjected to PFB esterification and analysis by negative ion chemical ionization GC-MS using a Hewlett Packard 5890 GC (Palo Alto, Calif.) coupled to a single quadrupole Hewlett Packard MS using a 30 m CP-Sil 8CB-MS column (5% phenyl, 95% dimethylpolysiloxane; Varian, Palo Alto, Calif.) (31). The following temperature gradient was used to resolve the positional isomers of LNO.sub.2: 165 to 190 C. at 10 C./min; 190 to 270 C. at 2 C./min; and 270 to 290 C. at 5 C./min. Helium and methane were used as carrier and reagent gases, respectively. The detection of LNO.sub.2 was conducted by total ion count monitoring of [M-PFB].sup., i.e., m/z 324 ([.sup.12C.sup.14N]LNO.sub.2), 325 ([.sup.12C, .sup.15N]) and 342 ([.sup.13C, .sup.14N]LNO.sub.2).
(150) Initial characterization of positional isomers of synthetic LNO.sub.2 was via EI GC-MS on LNO.sub.2 methyl esters. Total ion count monitoring of the derivatized parent ion LNO.sub.2 revealed 2 dominant peaks at 38.75 and 39 min when resolved using a 100 m column (
(151) Structural analysis of synthetic LNO.sub.2 isomers by EI GC MS yielded important isomeric structural information and identification; but lacks sensitivity for the detection, structural characterization and quantification of LNO.sub.2 derivatives present in biological samples. Thus, these analyses were performed by NICI GC-MS on LNO.sub.2 species that had been derivatized to PFB esters (
(152) Analysis of LNO.sub.2 positional isomers by electrospray ionization triple quadrupole mass spectrometry. Qualitative analysis of nitrated linoleic acid positional isomers by electrospray ionization mass spectrometry was performed using an Applied Biosystems/MDS Sciex 4000 Q Trap, a hybrid triple quadrupole-linear ion trap mass spectrometer. To separate and characterize the two major LNO.sub.2 positional isomers, synthetic standards and lipid extracts from biological samples were resolved by reverse-phase high performance liquid chromatography (HPLC) using a 1502 mm C18 Phenomenex Luna column (3 m particle size). Lipids were eluted using a gradient solvent system consisting of A (H.sub.2O containing 0.1% NH.sub.4OH) and B (CNCH.sub.3 containing 0.1% H.sub.2O) under the following conditions: 20-70% B (linear increase, 20 min), 70-95% B (2 min), 95% B (8 min), 95-20% B (1 min) and 20% B (5 min). Using these gradient conditions, two major and two minor LNO.sub.2 positional isomers were separated with baseline resolution. The resolved positional isomers of LNO.sub.2 were detected by mass spectrometry using a multiple reaction monitoring (MRM) scan mode by reporting molecules that undergo an m/z 324/277 mass transition. This transition, consistent with the loss of HNO.sub.2 ([M-(HNO.sub.2)H].sup.), is common for all mono-nitrated positional isomers of linoleic acid. Concurrent with MRM, enhanced product ion analysis (EPI) was performed to generate characteristic and identifying fragmentation patterns of the eluting species with a precursor mass of m/z 324. In some analyses, specific fragments appearing in the EPI spectra were further fragmented in the ion trap to generate a MS.sup.3 spectrum to verify structural elucidation.
(153) The most sensitive and selective technique available for analyte quantitation is triple quadrupole mass spectrometry detecting in the MRM. An HPLC separation strategy that baseline-resolved individual LNO.sub.2 positional isomers permitted the MS-based quantitation of LNO.sub.2 positional isomers, following chromatography of red cell and plasma lipid extracts. By monitoring the m/z 324/277 mass transition of the linoleate nitro derivative and the fatty acid parent molecule, respectively (
(154) HPLC-ESI MS/MS was used to characterize and quantitate LNO.sub.2 species present in healthy human blood, specifically red cells and plasma (
(155) Control studies relevant to processing and analysis-induced lipid nitration. In the presence of nitrite and acidic conditions, unsaturated fatty acids undergo nitration to products that reflect the chromatographic and MS characteristics of nitrosenylation-derived synthetic LNO.sub.2 isomers (18-20). Thus, acidic conditions were either avoided or documented for potential influence on product yield and nature. Importantly, lipid extractions were routinely conducted in the presence of pH 7.4 aqueous buffers. Comparison of LNO.sub.2 content in preparations extracted under neutral or acidic conditions revealed that there was no difference in LNO.sub.2 yield or LNO.sub.2 isomer distribution only in the complete absence of NO.sub.2.sup.. Acidic lipid extraction conditions (pH<4.0) in the presence of exogenously-added biological concentrations of NO.sub.2.sup. (10-500 M) induced additional linoleate nitration, as indicated by nitration of .sup.13C-linoleic acid added to pure linoleate or biological lipid extracts. When lipid extracts are separated by TLC prior to MS analysis, effective resolution of LNO.sub.2 from native and oxidized fatty acids requires the use of a 1% acetic acid-containing solvent system. It was observed that when NO.sub.2.sup. was present in the TLC chromatographic solvent at concentrations not expected from biological analyses (>1 mM), LNO.sub.2 was formed de novo by acid-catalyzed nitration reactions. Since the initial solvent extraction of lipids from synthetic mixtures or biological materials resulted in removal of >95% of all adventitious NO.sub.2.sup., confidence exists that artifactual fatty acid nitration reactions were not occurring during acidic HPLC or TLC resolution. With regard to biological sample analysis, this latter precept was affirmed by a) adding .sup.13C-labeled linoleic acid prior to red cell and plasma lipid extraction, purification and MS analysis and b) observing no formation of .sup.13C-labeled nitrated linoleic acid derivatives.
(156) Detection and quantitation of LNO.sub.2 in human red blood cells. Quantitation of LNO.sub.2 in biological samples was performed as above, with modification. During the monophase stage of lipid extractions (29), a known quantity of [.sup.13C]LNO.sub.2 was added as internal standard to correct for loss during extraction and TLC. The gradient elution profile was changed so that all LNO.sub.2 positional isomers co-eluted. Lipids were eluted from the same column used for structural characterization using a gradient solvent system consisting of A (H.sub.2O containing 0.1% NH.sub.4OH) and B (CNCH.sub.3 containing 0.1% H.sub.2O) under the following conditions: 80-90% B (2 min), 90% B (3 min), 90-80% B (1 min) and 80% B (2 min). Two MRM transitions were monitored: m/z 324/277, for LNO.sub.2 isomers, and m/z 342/295, a transition consistent with the loss of HNO.sub.2 for the .sup.13C-labeled internal standard. The areas under each peak were integrated, the ratio of analyte to internal standard areas was determined and amounts of LNO.sub.2 were quantitated using Analyst 1.4 quantitation software (Applied Biosystems, Foster City, Calif.) by fitting the data to an internal standard curve. Adjustable mass spectrometer settings for both qualitative and quantitative analyses were as follows: CUR 10; IS 4500; TEM 450; GS1 50; GS2 60; CAD 2 (8 when EPI experiments were concurrently performed); DP 50; and EP 10. House-generated zero grade air was used as the source gas and nitrogen was used as the curtain and collision gases.
(157) To quantitate net LNO.sub.2 species present in red cells and plasma, HPLC gradient conditions were changed (see Experimental Methods) so that all positional isomers co-eluted (
(158) Throughout the Background and Example 1, several publications have been referenced. These publications are listed in the Reference List following Example 1. The disclosures of these publications in their entireties are hereby incorporated by reference into this application in order to more fully describe the compounds, compositions and methods described herein.
(159) TABLE-US-00001 TABLE 1 Biologically active nitrogen oxide derivatives in human blood - comparison with net C10- and C12-nitro derivatives of linoleic acid. Venous blood was obtained from healthy human volunteers, centrifuged (1200 x g; 10 min) and plasma isolated from red cell pellets from which the buffy coat was removed. Total lipid extracts were prepared from packed red cells and plasma (29) and analyzed by mass spectrometry as described in Experimental Methods. Total LNO.sub.2 (free plus esterified) was determined in lipid extracts following saponification. Free and total LNO.sub.2 was quantitated by fitting analyte to internal standard area ratios obtained by mass spectrometry to an internal standard curve. Data are expressed as mean SD (n = 10; 5 female, 5 male). Species Compartment Concentration (nM) Reference NO.sub.2.sup. Plasma 205 21 (35, 36) RSNO Plasma 7.2 1.1 (35, 36) Plasma LNO.sub.2 Free 80 34 Esterified 550 274 Total 630 240 Hb-NO Blood >50 (37) Hb-SNO Blood 0-150 (34) LNO.sub.2 Packed red cells Free 25 8 Esterified 199 60 Total 224 52 LNO.sub.2 Whole Blood* 477 128 *assuming a 40% hematocrit
REFERENCES
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Example 2
(161) Allylic nitro derivatives of linoleic acid (nitrolinoleic acid, LNO.sub.2) are formed via nitric oxide-dependent oxidative inflammatory reactions and are found at concentrations of 500 nM in the blood of healthy individuals. It will be shown that nitrolinoleic acid (LNO.sub.2) is a potent endogenous ligand for peroxisome proliferator-activated receptor (PPAR ; K.sub.i133 nM) that acts within physiological concentration ranges. This nuclear hormone receptor (PPAR) regulates glucose homeostasis, lipid metabolism and inflammation. PPAR ligand activity is specific for LNO.sub.2 and not mediated by LNO.sub.2 decay products, NO donors, linoleic acid or oxidized linoleic acid. LNO.sub.2 is a significantly more robust PPAR ligand than other reported endogenous PPAR ligands, including lysophosphatidic acid (LPA 16:0 and LPA 18:1), 15-deoxy-.sup.12,14-PGJ.sub.2, conjugated linoleic acid and azelaoyl-PC. LNO.sub.2 activation of PPAR via CV-1 cell luciferase reporter gene expression analysis revealed a ligand activity that rivals or exceeds synthetic PPAR agonists such as Rosiglitazone and Ciglitazone, is co-activated by 9 cis-retinoic acid and is inhibited by the PPAR antagonist GW9662. LNO.sub.2 induces PPAR-dependent macrophage CD-36 expression, adipocyte differentiation and glucose uptake also at a potency rivaling thiazolidinediones. These observations reveal that nitric oxide (NO)-mediated cell signaling reactions can be transduced by fatty acid nitration products and PPAR-dependent gene expression.
(162) The reaction of nitric oxide (NO) with tissue free radical and oxidative intermediates yields secondary oxides of nitrogen that mediate oxidation, nitration and nitrosation reactions (1, 2). Of present relevance, the reaction of NO and NO-derived species with oxidizing unsaturated fatty acids is kinetically rapid and exerts a multifaceted impact on cell redox and signaling reactions. Nitric oxide readily out-competes lipophilic antioxidants for the scavenging of lipid radicals, resulting in the inhibition of peroxyl radical-mediated chain propagation reactions (3). Both the catalytic activity and gene expression of eicosanoid biosynthetic enzymes are also regulated by NO, affirming a strong linkage between NO and fatty acid oxygenation product synthesis and signaling (4, 5). Consistent with this latter precept, fatty acid nitration products generated by NO-derived species inhibit multiple aspects of inflammatory cell function, indicating that nitrated fatty acids are both byproducts and mediators of redox signaling reactions (6-8).
(163) Recently, the structural characterization and quantitation of nitrolinoleic acid (LNO.sub.2) in human red cells and plasma revealed this unsaturated fatty acid derivative to be the most abundant bioactive oxide of nitrogen in the vasculature. Net blood levels of 80 and 550 nM free and esterified LNO.sub.2, respectively, were measured in healthy humans (9). The observation that NO-dependent oxidative inflammatory reactions yields allylic nitro derivatives of unsaturated fatty acids displaying cGMP-independent cell signaling properties (5) led to the identification of a receptor that can transduce LNO.sub.2 signaling. Affymetrix oligonucleotide microarray analysis of cRNA prepared from methanol (vehicle), linoleic acid (LA)- and LNO.sub.2-treated human aortic smooth muscle cells indicated that LNO.sub.2 specifically and potently regulated the expression of key inflammatory, cell proliferation and cell differentiation-related proteins. Multiple PPAR target genes were significantly regulated, suggesting that LNO.sub.2 serves as an endogenous PPAR ligand.
(164) PPAR is a nuclear hormone receptor that binds lipophilic ligands. Downstream effects of PPAR activation include modulation of metabolic and cellular differentiation genes and regulation of inflammatory responses (e.g., integrin expression, lipid transport by monocytes), adipogenesis and glucose homeostasis (10, 11). In the vasculature, PPAR is expressed in monocytes, macrophages, smooth muscle cells and endothelium (12) and plays a central role in regulating the expression of genes related to lipid trafficking, cell proliferation and inflammatory signaling(13). While synthetic thiazolidinediones (TZDs) such as Rosiglitazone and Ciglitazone are appreciated to be the most potent PPAR ligands yet described, considerable interest and debate remains focused on the identity of endogenous PPAR ligands because of therapeutic potential and their intrinsic value in understanding cell signaling. At present, tissue and plasma levels of putative PPAR ligands are frequently not precisely defined and when so, are found in concentrations sometimes orders of magnitude lower than those required to activate specific , or PPAR subtypes (14-16). As set forth herein, the allylic nitro derivatives of fatty acids are robust endogenous PPAR ligands that act within physiological concentration ranges to modulate key PPAR-regulated signaling events including adipogenesis, adipocyte glucose homeostasis and CD36 expression in macrophages.
(165) Materials. LNO.sub.2 and [.sup.13C]LNO.sub.2 were synthesized and purified using linoleic acid (NuCheckPrep, Elysian, Minn.) and [.sup.13C]linoleic acid (Spectra Stables Isotopes, Columbia, Md.) subjected to nitroselenylation as previously described (9). LNO.sub.2 concentrations were quantified spectroscopically and by chemiluminescent nitrogen analysis (Antec Instruments, Houston, Tex.) using caffeine as a standard (9). Anti-CD36 antibody (kindly provided by Dr. de Beer at University of Kentucky Medical Center, Lexington, Ky.); anti-PPAR and anti--actin antibodies were from Santa Cruz (Santa Cruz, Calif.); and anti-aP2 antibody was from Chemicon International Inc. (Temecula, Calif.). Horseradish peroxidase-linked goat anti-rabbit IgG and Coomasie Blue were from Pierce (Rockford, Ill.). [.sup.3H]Rosiglitazone was from American Radiolabeled Chemical, Inc. (St. Louis, Mo.). [.sup.3H] 2-Deoxy-D-glucose was from Sigma (St Louis, Mich.). Scintil-Safe Plus 50% was from Fisher Scientific (Pittsburgh, Pa.). Rosiglitazone, Ciglitazone, 15-deoxy-.sup.12,14-PGJ.sub.2, Conjugated Linoleic Acid (CLA1, CLA2) and GW9662 were from Cayman Chemical (Ann Arbor, Mich.). 1-palmitoyl-2-hydroxy-sn-glycero-3-Phosphate (16:0 LPA), 1-O-9-(Z)-octadecenyl-2-hydroxy-sn-glycero-3-phosphate (18:1 LPA), 1-O-hexadecyl-2-azelaoyl-sn-glycero-3-phosphocholine (azPC), 1-Palmitoy-2-Azelaoyl-sn-Glycero-3-Phosphocholine (azPC Ester) were from Avanti Polar Lipids, Inc. (Alabaster, Ala.).
(166) Cell Transient Transfection Assay. CV-1 cells from ATCC (Manassas, Va.) were grown to 85% confluence in DMEM/F12 supplemented with 10% FBS, 1% penicillin-streptomycin. Then, cells were transiently co-transfected with a plasmid containing the luciferase gene under regulation by four Gal4 DNA binding elements (UAS.sub.G4 TK-Luciferase, a gift from Dr. Ronald M. Evans), in concert with plasmids containing the ligand binding domain for the different nuclear receptors fused to the Gal4 DNA binding domain. For assessing full-length PPAR receptors, CV-1 cells were transiently co-transfected with a plasmid containing the luciferase gene under the control of three tandem PPAR response elements (PPRE) (PPRE3 TK-Luciferase) and hPPAR, hPPAR or hPPAR expression plasmids, respectively. In all cases, fluorescence protein (GFP) expression plasmid was co-transfected as the control for the transfection efficiency. Twenty-four hours after the transfection, cells were cultured for another 24 hours in Optium-MEM (Invitrogen, Carlsbad, Calif.). Then, cells were treated with different compounds as indicated in figures for 24 hours in Optium-MEM. Reporter luciferase assay kits from Promega (Madison, Wis.) were used to measure the luciferase activity according to the manufacturer's instructions with a luminometer (Victor II, Perkin-Elmer). Luciferase activity was normalized by GFP units. Each condition was performed at least in triplicates in each experiment. All experiments were repeated at least three times.
(167) PPAR Competition Binding Assay. Human PPAR1 cDNA was inserted into pGEX from Amersham Biosciences Corp (Piscataway, N.J.) containing the gene encoding glutathione S-transferase (GST). GST-PPAR protein induction and receptor binding was assessed as previously described (17).
(168) 3T3-L1 Differentiation and Oil Red O Staining. 3T3-L1 preadipocytes were propagated and maintained in DMEM containing 10% FBS. To induce differentiation, 2-day postconfluent preadipocytes (designated day 0) were cultured in DMEM containing 10% FBS plus 3 M LNO.sub.2 for 14 days. The medium was changed every two days. Rosiglitazone (3 M) and linoleic acid (10 M) were used as the positive and negative control, respectively. The differentiated adipocytes were stained by Oil red O as previously described (18).
(169) [.sup.3H]-2-Deoxy-D-glucose Uptake Assay in Differentiated 3T3-L1 Adipocyte. [.sup.3H]-2-Deoxy-D-glucose uptake assay as previously described (19) 3T3-L1 preadipocytes were grown in 24-well tissue culture plates, 2-day postconfluent preadipocytes were treated by 10 g/ml insulin (Sigma), 1 M dexamethasone (Sigma), and 0.5 mM 3-isobutyl-1-methylxanthine (Sigma) in DMEM containing 10% FBS for two days, then cells were kept in 10 g/ml insulin also in DMEM containing 10% FBS for 6 days (changed medium every three days). Eight days after induction of adipogenesis, test compounds in DMEM containing 10% FBS were added for an additional 2 days (changed medium every day) and PPAR-specific antagonist GW9662 were pretreated 1 h before other additions. After two rinses with serum-free DMEM, cells were incubated for 3 h in serum-free DMEM and rinsed at room temperature three times with freshly prepared KRPH buffer (5 mM phosphate buffer, 20 mM HEPES, 1 mM MgSO.sub.4, 1 mM CaCl.sub.2, 136 mM NaCl, 4.7 mM KCl, pH 7.4). The buffer was replaced with 1 Ci/ml of [.sup.3H]-2-deoxy-D-glucose in KRPH buffer for 10 min at room temperature. The treated cells were rinsed carefully three times with cold PBS, lysed overnight in 0.8N NaOH (0.4 ml/well), and neutralized with 13.3 l of 12N HCl. Lysate (360 l) was added to 4 ml Scinti-Safe Plus TM 50% in a scintillation vial, and the vials were mixed and counted.
(170) RNA and Protein Preparation and Analysis. RNA and protein expression levels were analyzed by quantitative real-time PCR and Western blot analysis as previously described..sup.25
(171) LNO.sub.2 decay. LNO.sub.2 decay was induced by incubating 3 M LNO.sub.2 in medium+serum at 37 C. At different times, samples were removed and analyzed for bioactivty or for LNO.sub.2 content by Bligh and Dyer extraction in the presence of 1 M [.sup.13C] LNO.sub.2 as an internal standard. Non-decayed LNO.sub.2 was quantified via triple quadrupole mass spectrometric analysis (Applied Biosystems/MDS Sciex, Thornhill, Ontario, Canada) as previously reported (9).
(172) To characterize LNO.sub.2 as a potential ligand for a lipid-binding nuclear receptor [e.g., PPAR, PPAR, PPAR, androgen receptor (AR), glucocorticoid receptor (GR), mineralocorticoid receptor (MR), progesterone receptor (PR) and retinoic X receptor (RXR)], CV-1 reporter cells were co-transfected with plasmids containing the ligand binding domain for these nuclear receptors fused to the Gal4 DNA binding domain and the luciferase gene under regulation of four Gal4 DNA binding elements. LNO.sub.2 (1 M) induced significant activation of PPAR (620%), PPAR (325%) and PPAR (221%), with no impact on AR, GR, MR, PR or RXR receptor activation (
(173) PPAR activation by LNO.sub.2 rivaled that induced by Ciglitazone and Rosiglitazone and exceeded that of 15-deoxy-.sup.12,14-PGJ.sub.2 (20, 21), which only occurred at concentrations 3 orders of magnitude greater than found clinically (
(174) LNO.sub.2 slowly undergoes decay reactions in aqueous solution, displaying a 30-60 min half-life (
(175) Competitive PPAR binding analysis quantified the displacement of [.sup.3H]Rosiglitazone by unlabeled Rosiglitazone, LNO.sub.2 and linoleic acid. The calculated binding affinity (Ki) for Rosiglitazone was 53 nM, consistent with reported values (
(176) The PPAR agonist actions of LNO.sub.2 were also examined in a biological context, using cell models noted for well-established PPAR-dependent functions. The scavenger receptor CD36 is expressed in diverse cell types, including platelets, adipocytes and macrophages. In macrophages, CD36 is a receptor for oxidized LDL, with expression positively regulated by PPAR (29). Treatment of mouse RAW264.7 macrophages with LNO.sub.2 induced greater CD36 receptor protein expression than an equivalent Rosiglitazone concentration, a response partially inhibitable by the PPAR-specific antagonist GW9662 (
(177) PPAR plays an essential role in the differentiation of adipocytes (30, 31). In support of this precept, selective disruption of PPAR results in impaired development of adipose tissue (18, 32). To define if LNO.sub.2 induces PPAR-activated adipogenesis, 3T3-L1 preadipocytes were treated with LNO.sub.2, Rosiglitazone or linoleic acid for two weeks. Adipocyte differentiation was assessed both morphologically and via oil red O staining, which reveals the accumulation of intracellular lipids. Vehicle and linoleic acid did not affect differentiation, while LNO.sub.2 induced >30% of 3T3-L1 preadiopcyte differentiation (
(178) The identification of bona fide high affinity endogenous PPAR ligands has been a provocative issue that, when resolved, will advance our understanding of endogenous PPAR modulation and can reveal new means for intervention in diverse metabolic disorders and disease processes. This will also shed light on the broader contributions of this nuclear hormone receptor family to both the maintenance of tissue homeostasis and the regulation of cell and organ dysfunction. Of relevance, the generation of PPAR-activating intermediates from complex lipids often requires hydrolysis by phospholipase A.sub.2 (PLA.sub.2), with the identity of phospholipid sn-2 position fatty acid derivatives that might serve as PPAR agonists still forthcoming (33, 34). Thus, the fact that 80% of LNO.sub.2 present in a variety of tissue compartments is esterified encourages the notion that this pool of high affinity PPAR ligand activity will be mobilized upon the PLA.sub.2 activation that occurs during inflammation to regulate the formation of cell signaling molecules.
(179) Comparison of PPAR-dependent gene expression induced by LNO.sub.2 with that of TZDs and putative fatty acid- and phospholipid-derived PPAR ligands further affirmed the robust activity of LNO.sub.2 as a PPAR ligand. While a number of endogenous lipophilic species are proposed as PPAR ligands, their intrinsically low binding affinities and in vivo concentrations do not support a capability to serve as physiologically-relevant signaling mediators. Presently-reported endogenous PPAR agonists include free fatty acids, components of oxidized plasma lipoproteins (9- and 13-oxoODE, azPC), conjugated linoleic acid derivatives (CLA1 and CLA2), products of phospholipase hydrolysis of complex lipids (LPA), platelet activating factor (PAF) and eicosanoid derivatives such as the dehydration product of PGD.sub.2, 15-deoxy-.sup.12,14-PGJ.sub.2 (14, 22, 23). Herein, minimal or no activation of PPAR reporter gene expression by 1-3 M concentrations of these putative ligands was observed, in contrast to the dose-dependent PPAR activation by LNO.sub.2 that, for PPAR, was significant at clinically-relevant concentrations as low as 100 nM. A dilemma exists in that some putative endogenous PPAR agonists have only been generated by aggressive in vitro oxidizing conditions (e.g., Cu-mediated LDL oxidation) and have not been clinically quantified or detected (for instance, azPC, CLA). Other lipid derivatives proposed as PPAR ligands are present in <100 nM tissue concentrations, orders of magnitude below their binding affinities (1-15 M) and are not expected to result in significant receptor occupancy and activation in vivo. This latter category includes free fatty acids, eicosanoids, 9- and 13-oxoODE, PAF and 15-deoxy-.sup.12,14-PGJ.sub.2 (14). For example, while LPA is a notable PPAR ligand of relevance to vascular, inflammatory and cell proliferative diseases the plasma concentration of LPA is well below 100 nM (35, 36) and its binding affinity for PPAR has not been established. Also, the in vivo downstream vascular signaling actions of LPA are inconsistent with its proposed PPAR ligand activity (24, 37-39). Future studies using mice genetically deficient for PPAR and NOS isoforms should assist in defining the mechanisms of formation and endogenous PPAR ligand activity of nitrated fatty acids.
(180) In summary, LNO.sub.2 is a high affinity ligand for PPARs, especially PPAR, that activates both reporter constructs and cells at physiological concentrations. Fatty acid nitration products, generated by NO-dependent reactions, are thus expected to display broad cell signaling capabilities as endogenous nuclear receptor-dependent paracrine signaling molecules with a potency that rivals TZDs (
(181) Throughout Example 2, several publications have been referenced. These publications are listed in the Reference List for Example 2. The disclosures of these publications in their entireties are hereby incorporated by reference into this application in order to more fully describe the compounds, compositions and methods described herein.
REFERENCE LIST FOR EXAMPLE 2
(182) 1. Schopfer, F. J., Baker, P. R. & Freeman, B. A. (2003) Trends Biochem. Sci. 28, 646-654. 2. Hogg, N. (2002) Annu. Rev. Pharmacol. Toxicol. 42, 585-600. 3. Rubbo, H., Radi, R., Anselmi, D., Kirk, M., Barnes, S., Butler, J., Eiserich, J. P. & Freeman, B. A. (2000) J. Biol. Chem. 275, 10812-10818. 4. Marnett, L. J., Wright, T. L., Crews, B. C., Tannenbaum, S. R. & Morrow, J. D. (2000) J. Biol. Chem. 275, 13427-13430. 5. O'Donnell, V. B. & Freeman, B. A. (2001) Circ. Res. 88, 12-21. 6. Coles, B., Bloodsworth, A., Eiserich, J. P., Coffey, M. J., McLoughlin, R. M., Giddings, J. C., Lewis, M. J., Haslam, R. J., Freeman, B. A. & O'Donnell, V. B. (2002) J. Biol. Chem. 277, 5832-5840. 7. Coles, B., Bloodsworth, A., Clark, S. R., Lewis, M. J., Cross, A. R., Freeman, B. A. & O'Donnell, V. B. (2002) Circ. Res. 91, 375-381. 8. Rubbo, H., Radi, R., Trujillo, M., Telleri, R., Kalyanaraman, B., Barnes, S., Kirk, M. & Freeman, B. A. (1994) J. Biol. Chem. 269, 26066-26075. 9. Baker, P. R., Schopfer, F. J., Sweeney, S. & Freeman, B. A. (2004) Proc. Natl. Acad. Sci. U.S.A 101, 11577-11582. 10. Lee, C. H. & Evans, R. M. (2002) Trends Endocrinol. Metab. 13, 331-335. 11. Marx, N., Duez, H., Fruchart, J. C. & Staels, B. (2004) Circ. Res. 94, 1168-1178. 12. Wang, N., Verna, L., Chen, N. G., Chen, J., Li, H., Forman, B. M. & Stemerman, M. B. (2002) J. Biol. Chem. 277, 34176-34181. 13. Chen, Y. E., Fu, M., Zhang, J., Zhu, X., Lin, Y., Akinbami, M. A. & Song, Q. (2003) Vitam. Horm. 66, 157-188. 14. Bell-Parikh, L. C., Ide, T., Lawson, J. A., McNamara, P., Reilly, M. & FitzGerald, G. A. (2003) J. Clin. Invest. 112, 945-955. 15. Rosen, E. D. & Spiegelman, B. M. (2001) J Biol. Chem. 276, 37731-37734. 16. Tzameli, I., Fang, H., Ollero, M., Shi, H., Hamm, J. K., Kievit, P., Hollenberg, A. N. & Flier, J. S. (2004) J. Biol. Chem. 17. Fu, J., Gaetani, S., Oveisi, F., Lo, V. J., Serrano, A., Rodriguez, D. F., Rosengarth, A., Luecke, H., Di Giacomo, B., Tarzia, G. et al. (2003) Nature 425, 90-93. 18. Zhang, J., Fu, M., Cui, T., Xiong, C., Xu, K., Zhong, W., Xiao, Y., Floyd, D., Liang, J., Li, E. et al. (2004) Proc. Natl. Acad. Sci. U. S. A 101, 10703-10708. 19. Mukherjee, R., Hoener, P. A., Jow, L., Bilakovics, J., Klausing, K., Mais, D. E., Faulkner, A., Croston, G. E. & Paterniti, J. R., Jr. (2000) Mol. Endocrinol. 14, 1425-1433. 20. Forman, B. M., Tontonoz, P., Chen, J., Brun, R. P., Spiegelman, B. M. & Evans, R. M. (1995) Cell 83, 803-812. 21. Kliewer, S. A., Lenhard, J. M., Willson, T. M., Patel, I., Morris, D. C. & Lehmann, J. M. (1995) Cell 83, 813-819. 22. Davies, S. S., Pontsler, A. V., Marathe, G. K., Harrison, K. A., Murphy, R. C., Hinshaw, J. C., Prestwich, G. D., Hilaire, A. S., Prescott, S. M., Zimmerman, G. A. et al. (2001) J. Biol. Chem. 276, 16015-16023. 23. McIntyre, T. M., Pontsler, A. V., Silva, A. R., St Hilaire, A., Xu, Y., Hinshaw, J. C., Zimmerman, G. A., Hama, K., Aoki, J., Arai, H. et al. (2003) Proc. Natl. Acad. Sci. U.S.A 100, 131-136. 24. Zhang, C., Baker, D. L., Yasuda, S., Makarova, N., Balazs, L., Johnson, L. R., Marathe, G. K., McIntyre, T. M., Xu, Y., Prestwich, G. D. et al. (2004) J. Exp. Med. 199, 763-774. 25. Kliewer, S. A., Sundseth, S. S., Jones, S. A., Brown, P. J., Wisely, G. B., Koble, C. S., Devchand, P., Wahli, W., Willson, T. M., Lenhard, J. M. et al. (1997) Proc. Natl. Acad. Sci. U. S. A 94, 4318-4323. 26. Nagy, L., Tontonoz, P., Alvarez, J. G., Chen, H. & Evans, R. M. (1998) Cell 93, 229-240. 27. Von Knethen, A. & Brune, B. (2002) J. Immunol. 169, 2619-2626. 28. Ferry, G., Bruneau, V., Beauverger, P., Goussard, M., Rodriguez, M., Lamamy, V., Dromaint, S., Canet, E., Galizzi, J. P. & Boutin, J. A. (2001) Eur. J. Pharmacol. 417, 77-89. 29. Chawla, A., Barak, Y., Nagy, L., Liao, D., Tontonoz, P. & Evans, R. M. (2001) Nat. Med. 7, 48-52. 30. Tontonoz, P., Hu, E., Graves, R. A., Budavari, A. I. & Spiegelman, B. M. (1994) Genes Dev. 8, 1224-1234. 31. Tontonoz, P., Hu, E. & Spiegelman, B. M. (1994) Cell 79, 1147-1156. 32. Evans, R. M., Barish, G. D. & Wang, Y. X. (2004) Nat. Med. 10, 355-361. 33. Delerive, P., Furman, C., Teissier, E., Fruchart, J., Duriez, P. & Staels, B. (2000) FEBS Lett. 471, 34-38. 34. Pawliczak, R., Han, C., Huang, X. L., Demetris, A. J., Shelhamer, J. H. & Wu, T. (2002) J. Biol. Chem. 277, 33153-33163. 35. Saulnier-Blache, J. S., Girard, A., Simon, M. F., Lafontan, M. & Valet, P. (2000) J. Lipid Res. 41, 1947-1951. 36. Xu, Y., Shen, Z., Wiper, D. W., Wu, M., Morton, R. E., Elson, P., Kennedy, A. W., Belinson, J., Markman, M. & Casey, G. (1998) JAMA 280, 719-723. 37. Chen, Z., Ishibashi, S., Perrey, S., Osuga, J., Gotoda, T., Kitamine, T., Tamura, Y., Okazaki, H., Yahagi, N., lizuka, Y. et al. (2001) Arterioscler. Thromb. Vasc. Biol. 21, 372-377. 38. Claudel, T., Leibowitz, M. D., Fievet, C., Tailleux, A., Wagner, B., Repa, J. J., Torpier, G., Lobaccaro, J. M., Paterniti, J. R., Mangelsdorf, D. J. et al. (2001) Proc. Natl. Acad. Sci. U.S.A 98, 2610-2615. 39. Collins, A. R., Meehan, W. P., Kintscher, U., Jackson, S., Wakino, S., Noh, G., Palinski, W., Hsueh, W. A. & Law, R. E. (2001) Arterioscler. Thromb. Vasc. Biol. 21, 365-371.
Example 3
(183) The synthesis, structural characterization, clinical quantitation and cell signaling activity of nitrated oleic acid (OA-NO.sub.2) are reported. Analysis of plasma and urine also revealed the presence of additional nitrated fatty acids, including nitrated linolenic, arachidonic, eicosapentaenoic and docosahexaenoic acids and multiple nitrohydroxy derivatives, which reveal the ubiquity of nitrated fatty acid derivatives in humans. Two nitroalkene derivatives of oleic acid were synthesized (9- and 10-nitro-9-cis-octadecenoic acid), structurally characterized and compared with nitrated fatty acids present in plasma, red cells and urine of healthy humans. Based on HPLC elution and mass spectrometric characteristics, these two regioisomers of OA-NO.sub.2 were identified in clinical samples. Using .sup.13C isotope dilution, OA-NO.sub.2 was quantitated, with plasma free and esterified levels of 61952 and 302369 nM, respectively. In red blood cells, free and esterified OA-NO.sub.2 was 5911 and 15565 nM, respectively. Assuming a 40% hematocrit, OA-NO.sub.2 levels are 50% greater than that of nitrated linoleic acid; with combined free and esterified levels of these two nitroalkene derivatives exceeding 1 M. OA-NO.sub.2 potently activated peroxisome proliferator activated receptor- and induced PPAR -dependent adipogenesis and deoxyglucose uptake in 3T3 L1 preadipocytes. These data reveal that multiple nitrated fatty acids comprise a class of NO and fatty acid-derived signaling molecules.
(184) The oxidation of unsaturated fatty acids converts lipids, otherwise serving as cell metabolic precursors and structural components, into potent signaling molecules including prostaglandins, leukotrienes, isoprostanes, hydroxy- and hydroperoxy-eicosatetraenoates and platelet-activating factor. This process, either enzymatic or auto-oxidative, orchestrates immune responses, neurotransmission and the regulation of cell growth. For example, prostaglandins are cyclooxygenase-derived lipid mediators that signal via receptor-ligand interactions to regulate inflammatory responses, vascular function, initiation of parturition, cell survival and angiogenesis (1). In contrast, the various isoprostane products of arachidonic acid auto-oxidation exert vasoconstrictive and pro-inflammatory signaling actions via both receptor-dependent and -independent mechanisms (2). A common element of these diverse lipid signaling actions is that nitric oxide (NO) and other reactive nitrogen species significantly impact lipid mediator formation and bioactivities.
(185) The ability of NO and NO-derived reactive species to oxidize, nitrosate and nitrate biomolecules suggests that NO might also influence the synthesis and reactions of bioactive lipids (3-5). Interactions between NO and lipid oxidation pathways are multifaceted and interdependent. For example, NO regulates both the activity and expression of prostaglandin H synthase (6). Conversely, leukotriene products of lipoxygenases induce nitric oxide synthase-2 expression to increase NO production (7). Furthermore, the autocatalytic chain propagation reactions of lipid peroxyl radicals during membrane and lipoprotein oxidation are potently inhibited by NO (8). Of relevance, reactions between NO-derived species and lipid oxidation intermediates yield nitrated fatty acids. Recently, the nitroalkene derivative of linoleic acid (LNO.sub.2) has been detected in human blood at concentrations sufficient to induce biological responses (500 nM, refs. (9-12)). Compared with other NO-derived species such as nitrite (NO.sub.2.sup.), nitrosothiols (RSNO) and heme-nitrosyl complexes, LNO.sub.2 represents the single most abundant pool of bioactive oxides of nitrogen in the healthy human vasculature (9,13-16).
(186) In vitro studies have shown that LNO.sub.2 mediates cGMP-dependent vascular relaxation, cGMP-independent inhibition of neutrophil degranulation and superoxide formation, and inhibition of platelet activation (10-12). Recently, LNO.sub.2 has been shown to exert cell signaling actions via ligation and activation of peroxisome proliferator activated receptors (PPAR) (17), a class of nuclear hormone receptors that modulates the expression of metabolic and cellular differentiation and inflammatory-related genes (18,19).
(187) The identification of LNO.sub.2 as an endogenous PPAR ligand that acts within physiologically-relevant concentrations motivated a search for other nitrated lipids that might serve related signaling actions. Herein, fatty acid nitroalkene products in plasma and urine are abundant and ubiquitous are reported. Of the total fatty acid content in red cells, linoleic acid and oleic acid comprise 8% and 18%, respectively (20). Thus, due to its prevalence and structural simplicity, oleic acid was evaluated as a potential candidate for nitration. Herein, reported is the synthesis, structural characterization and cell signaling activity of 9- and 10-nitro-9-cis-octadecaenoic acids (nitrated oleic acid; OA-NO.sub.2;
(188) Methods
(189) Materials. 9-Octadecenoic acid (oleic acid) and its respective methyl ester, methyl-9-octadecenoate was purchased from Nu-Check Prep (Elysian, Minn.). LNO.sub.2 and [.sup.13C]LNO.sub.2 were synthesized as previously described (9,12); OA-NO.sub.2 and [.sup.13C]OA-NO.sub.2 were synthesized as described in below. Phenylselenium bromide, HgCl.sub.2, NaNO.sub.2, anhydrous tetrahydrofuran (THF), CH.sub.3CN, CDCl.sub.3, insulin, dexamethasone and 3-isobutyl-1-methylxanthine were obtained from Sigma/Aldrich (St Louis, Mo.). Silica gel G and HF thin layer chromatography plates (250 and 2000 m) were from Analtech (Newark, Del.). Methanolic BF.sub.3, horseradish peroxidase-linked goat anti-rabbit IgG and Coomasie Blue were from Pierce (Rockford, Ill.). Synthetic solvents were of HPLC grade or better from Fisher Scientific (Fairlawn, N.J.). Solvents used for extractions and mass spectrometric analyses were from Burdick and Jackson (Muskegon, Mich.). [.sup.13C]Oleic acid and [.sup.13C]linoleic acid were purchased from Cambridge Isotope Laboratories, Inc. (Andover, Mass.). Anti-PPAR and anti-j-actin antibodies were from Santa Cruz (Santa Cruz, Calif.); anti-aP2 antibody was from Chemicon International Inc. (Temecula, Calif.).
(190) Synthesis of OA-NO.sub.2. Oleic acid and [.sup.13C]oleic acid were nitrated as described (9,12), with modifications. Briefly, oleic acid, HgCl.sub.2, phenylselenium bromide and NaNO.sub.2 (1:1.3:1:1, mol/mol) were combined in THF/acetonitrile (1:1, v/v) with a final concentration of 0.15 M oleic acid. The reaction mixture was stirred (4 h, 25 C.), followed by centrifugation to sediment the precipitate. The supernatant was recovered, the solvent evaporated in vacuo, the product mixture redissolved in THF (original volume) and the temperature reduced to 0 C. A ten-fold molar excess of H.sub.2O.sub.2 was slowly added with stirring to the mixture, which was allowed to react in an ice bath for 20 min followed by a gradual warming to room temp (45 min). The product mixture was extracted with hexane, the organic phase collected, the solvent removed in vacuo and lipid products solvated in CH.sub.3OH. OA-NO.sub.2 was isolated by preparative TLC using silica gel HF plates developed twice in a solvent system consisting of hexane/ether/acetic acid (70:30:1, v/v). The region of silica containing OA-NO.sub.2 was scraped and extracted (21). Based on this synthetic rationale, two regioisomers are generated: 9- and 10-nitro-9-cis-octadecenoic acids (generically termed OA-NO.sub.2). Thin layer chromatography does not resolve the two isomers. [.sup.13C]OA-NO.sub.2 was synthesized using [.sup.13C]oleic acid as a reactant. Stock concentrations of OA-NO.sub.2 isomers were quantitated by chemiluminescent nitrogen analysis (Antek Instruments, Houston, Tex.), using caffeine as a standard. All standards were diluted in methanol, aliquoted and stored under argon gas at 80 C. Under these conditions, OA-NO.sub.2 isomers remain stable for >3 months.
(191) OA-NO.sub.2 spectrophotometric characterization. OA-NO.sub.2 stock solution concentrations were initially determined by chemiluminescent nitrogen analysis. These data were utilized to determine dilution concentrations for subsequent spectral analysis. An absorbance spectrum of OA-NO.sub.2 from 200-450 nm was generated using 23 M OA-NO.sub.2 in phosphate buffer (100 mM, pH 7.4) containing 100 M DTPA. The extinction coefficients (E) for OA-NO.sub.2 and the isotopic derivative [.sup.13C]OA-NO.sub.2 were measured (.sub.270) using a UV-VIS spectrophotometer (Shimadzu, Japan). Absorbance values for increasing concentrations of OA-NO.sub.2 and [.sup.13C]OA-NO.sub.2 were plotted against concentration to calculate .
(192) NMR spectrometric analysis of OA-NO.sub.2-.sup.1H and .sup.13C NMR spectra were measured using a Varian INOVA 300 and 500 MHz NMR and recorded in CDCl.sub.3. Chemical shifts are in units (ppm) and referenced to residual proton (7.26 ppm) or carbon (77.28 ppm) signals in deuterated chloroform. Coupling constants (J) are reported in Hertz (Hz).
(193) Gas chromatography mass spectrometric characterization of OA-NO.sub.2. Methyl esters of purified synthetic OA-NO.sub.2 regioisomers were analyzed by electron impact ionization gas chromatography mass spectrometry (EI GC-MS). Fatty acid methyl esters of OA-NO.sub.2 were synthesized, extracted with hexane, washed twice with saturated saline, redissolved in undecane and analyzed by GC-MS using a Saturn 2000 Tandem Mass Spectrometer coupled to a Varian 3800 Gas Chromatograph. Samples were ionized by electron impact at +70 eV. The methyl ester-derivatized OA-NO.sub.2 regioisomers were resolved using a 30 m capillary column (5% phenyl 95% dimethylpolysiloxane; CP-Sil 8CB-MS, Varian) with the following temperature gradient: 80 C. (2 min); 80 to 170 C. at 20 C./min; 170 to 240 C. at 2 C./min and 240 to 280 C. at 5 C./min. Helium was used as a carrier gas.
(194) Structural characterization of OA-NO.sub.2 by electrospray ionization triple quadrupole mass spectrometry (ESI MS/MS). Qualitative analysis of OA-NO.sub.2 by ESI MS/MS was performed using a hybrid triple quadrupole-linear ion trap mass spectrometer (4000 Q trap, Applied Biosystems/MDS Sciex). To characterize synthetic and endogenous OA-NO.sub.2, a reverse-phase HPLC separation was developed using a 1502 mm C18 Phenomenex Luna column (3 m particle size). Lipids were eluted from the column using a gradient solvent system consisting of A (H.sub.2O containing 0.1% NH.sub.4OH) and B (CNCH.sub.3 containing 0.1% NH.sub.4OH) under the following conditions: 20 to 65% B (10 min); 65 to 95% B (1 min; hold for 3 min) and 95 to 20% B (1 min; hold for 3 min). Using these gradient conditions, OA-NO.sub.2 elutes after LNO.sub.2 positional isomers. OA-NO.sub.2 was detected using a multiple reaction monitoring (MRM) scan mode by reporting molecules that undergo a m/z 326/279 mass transition, which is consistent with the loss of the nitro group ([M-(HNO.sub.2)].sup.). Concurrent with MRM determination, enhanced product ion analysis (EPI) was performed to generate characteristic and identifying fragmentation patterns of eluting species with a precursor mass of m/z 326. EPI analysis utilizes the trap functionality of the triple quadrupole to concentrate fragment ions to enhance sensitivity. Zero grade air was used as source gas, and nitrogen was used in the collision chamber.
(195) Red blood cell isolation and lipid extraction. Peripheral blood from fasting healthy human volunteers was collected by venipuncture into heparinized tubes (UAB Institutional Review Board-approved protocol #X040311001). Blood was centrifuged (1200g; 10 min), the buffy coat removed and erythrocytes were isolated. Lipid extracts were prepared from red cells and plasma (21) and directly analyzed by mass spectrometry. Care was taken to avoid acidification during extraction to prevent artifactual lipid nitration due to the presence of endogenous nitrite (9). In experiments using urine as the biological specimen (UAB Institutional Review Board-approved protocol #X040311003), extraction conditions were identical.
(196) Detection and quantitation of OA-NO.sub.2 in human blood and urine. Quantitation of OA-NO.sub.2 in biological samples was performed as described (9), with modifications. Matched blood and urine samples were obtained after >8 hr fasting; urine was collected from the first void of the day. During the monophase stage of the lipid extraction (21), [.sup.13C]OA-NO.sub.2 was added as internal standard to correct for losses due to extraction. Nitrated fatty acids were then analyzed by HPLC ESI MS/MS. Lipids were eluted from the HPLC column using an isocratic solvent system consisting of CH.sub.3CN:H.sub.2O:NH.sub.4OH (85:15:0.1, v/v), resulting in the co-elution of the two OA-NO.sub.2 regioisomers. During quantitative analyses, two MRM transitions were monitored: m/z 326/279 (OA-NO.sub.2) and m/z 344/297 ([.sup.13C]OA-NO.sub.2), transitions consistent with the loss of the nitro group from the respective precursor ions. The areas under each peak were integrated, the ratio of analyte to internal standard areas was determined and levels of OA-NO.sub.2 were quantitated using Analyst 1.4 quantitation software (Applied Biosystems/MDS Sciex) by fitting the data to an internal standard curve. Data are expressed as meanstd dev (n=10; 5 female and 5 male).
(197) Qualitative analysis of nitro- and nitrohydroxy-adducts of fatty acids. Using HPLC ESI-MS/MS, blood and urine samples were evaluated for the presence of allylic nitro derivatives other than LNO.sub.2 and OA-NO.sub.2. HPLC separations were performed similarly to those used to characterize OA-NO.sub.2, with some modifications. Alternative MRM transitions were used to detect other potential nitroalkene derivatives. Based on what appears to be a common fragmentation product of nitrated fatty acids (i.e., loss of the nitro group; [MHNO.sub.2].sup.), theoretical MRM transitions were determined for nitrated linolenic (18:3-NO.sub.2), arachidonic (20:4-NO.sub.2) and docosahexaenoic acids (22:6-NO.sub.2). MRM transitions for nitrohydroxy adducts were also monitored: 18:1 (OH)NO.sub.2; 18:2(OH)NO.sub.2; 18:3(OH)NO.sub.2; 20:4(OH)NO.sub.2 and 22:6(OH)NO.sub.2.
(198) LNO.sub.2 and OA-NO.sub.2 decay. The relative rates of LNO.sub.2 and OA-NO.sub.2 decay in aqueous solution were determined by incubating 3 M LNO.sub.2 and OA-NO.sub.2 in phosphate buffer (100 mM, pH 7.4, 37 C.). During the two hour incubation, aliquots were removed and analyzed for LNO.sub.2 and OA-NO.sub.2 content. The aliquots were extracted as described (21) and 1 M [.sup.13C]LNO.sub.2 was added during the monophase stage of the extraction procedure as an internal standard. Non-decayed LNO.sub.2 and OA-NO.sub.2 were quantitated via HPLC ESI-MS/MS as described above.
(199) PPAR transient transfection assay. CV-1 cells from the ATCC (Manassas, Va.) were grown to 85% confluence in DMEM/F12 supplemented with 10% FBS, 1% penicillin-streptomycin. Twelve hours before transfection, the media was removed and antibiotic-free media was applied. Cells were transiently co-transfected with a plasmid containing the luciferase gene under the control of three tandem PPAR response elements (PPRE) (PPRE3 TK-Luciferase) and PPAR, PPAR or PPAR expression plasmids, respectively. In all cases, fluorescence protein (GFP) expression plasmid was co-transfected as the control for transfection efficiency. Twenty-four hours after transfection, cells the returned to OptiMEM (Invitrogen, Carlsbad, Calif.) for 24 hr and then treated as indicated for another 24 hr. Reporter luciferase assay kits from Promega (Madison, Wis.) were used to measure the luciferase activity according to the manufacturer's instructions with a luminometer (Victor II, Perkin-Elmer). Luciferase activity was normalized by GFP units. Each condition was performed in triplicate in each experiment (n>3).
(200) 3T3-L1 differentiation and oil red O staining. 3T3-L1 preadipocytes were propagated and maintained in DMEM containing 10% FBS. To induce differentiation, 2-day post-confluent preadipocytes (designated day 0) were cultured in DMEM containing 10% FBS plus 1 and 3 M OA-NO.sub.2 for 14 days. The medium was changed every two days. Rosiglitazone (3 M) and oleic acid (3 M) were used as positive and negative controls, respectively. Differentiated adipocytes were stained with oil red O as previously (22).
(201) [.sup.3H]-2-Deoxy-D-glucose uptake assay in differentiated 3T3-L1 adipocytes. [.sup.3H]-2-deoxy-D-glucose uptake was analyzed as previously (23). 3T3-L1 preadipocytes were grown in 24-well tissue culture plates, 2-day post-confluent monolayers were treated with 10 g/ml insulin, 1 M dexamethasone, and 0.5 mM 3-isobutyl-1-methylxanthine in DMEM containing 10% FBS for two days, then cells were maintained in 10 g/ml insulin in DMEM containing 10% FBS for 6 days (medium was changed every three days). Eight days after induction of adipogenesis, test compounds in DMEM containing 10% FBS were added for an additional 2 days (medium was changed every day). The PPAR-specific antagonist GW9662 was added 1 hr before other additions. After two rinses with serum-free DMEM, cells were incubated for 3 hr in serum-free DMEM and rinsed at room temperature three times with freshly prepared KRPH buffer (5 mM phosphate buffer, 20 mM HEPES, 1 mM MgSO.sub.4, 1 mM CaCl.sub.2, 136 mM NaCl, 4.7 mM KCl, pH 7.4). The buffer was replaced with 1 Ci/ml of [.sup.3H]-2-deoxy-D-glucose in KRPH buffer for 10 min at room temperature. Cells were then rinsed three times with cold PBS, lysed overnight in 0.8 N NaOH (0.4 ml/well), neutralized with 26.6 l of 12 N HCl and 360 l of lysate was added into 4 ml Scinti-Safe Plus 50% for radioactivity determination by liquid scintillation counting.
(202) Results
(203) Detection and identification of nitrated PUFA. The discovery that LNO.sub.2 is present in vivo motivated a search for additional endogenous nitrated fatty acids that may also act as lipid signaling molecules. To survey plasma and urine for other nitrated fatty acids, lipid extracts from healthy human blood donors were analyzed by HPLC ESI MS/MS in the multiple reaction monitoring (MRM) scan mode. MRM transitions were calculated for the nitro- and nitrohydroxy-adducts of six fatty acids, as shown in Table 2, and were used to detect nitro- and nitrohydroxy-adducts present in plasma and urine lipid extracts using an isocratic HPLC elution methodology (
(204) TABLE-US-00002 TABLE 2 Multiple reaction monitoring (MRM) transitions for fatty acid nitroalkene derivatives MRM values for nitroalkene and nitrohydroxy-adducts of fatty acids were based on the common loss of the nitro group that occurs during collision-induced dissociation of nitrated fatty acids. Carbons:dou- Nitro adduct Nitrohydroxy adduct Fatty Acid ble bonds (NO.sub.2) (L(OH)NO.sub.2) Oleic 18:1 326/279 344/297 Linoleic 18:2 324/277 342/295 Linolenic 18:3 322/275 340/293 Arachidonic 20:4 348/301 366/319 Eicosapentaenoic 20:5 346/299 364/317 Docosahexaenoic 22:6 372/325 390/343
(205) Synthesis and purification of OA-NO.sub.2. Nitration of oleic acid by nitrosenylation will yield two potential regioisomers of OA-NO.sub.2 (
(206) NMR analysis of OA-NO.sub.2. The structure of synthetic OA-NO.sub.2 (a 1:1 mixture of C9- and C10 regioisomers) was analyzed by .sup.1H and .sup.13C NMR. NMR splitting patterns are designated as s, singlet; d, doublet; t, triplet; q, quartet; m, multiplet and br, broad. .sup.1H-NMR (CDCl.sub.3): 11.1 (br s, 1H); 7.06 (dd, 1H, J=7.8 Hz); 3.75 (t, 2H, J=6.7 Hz); 2.55 (t, 2H, J=7.6 Hz); 2.36 (q, 2H, J=7.6 Hz); 2.33 (m, 2H); 2.20 (q, 2H, J=7.3 Hz); 1.85 (m, 2H); 1.61 (m, 4H); 1.47 (m, 4H); 1.32-1.25 (m, 8H); 0.87 (dt, 3H, J=7.0 Hz). The .sup.1H spectrum and proposed assignments of diagnostic peaks are presented in
(207) Further structural characterization was performed by .sup.13C NMR. From the spectrum, 30 total peaks were observed: 180.1, 180.0; 152.2, 152.0; 136.8, 136.4; 68.1; 34.2; 32.0; 29.6; 29.5; 29.5; 29.5; 29.4; 29.4; 29.3; 29.2; 29.1; 28.8; 28.7; 28.3; 28.2; 28.1; 28.1; 26.6; 26.6; 25.8; 24.8; 22.9; 14.3. The proposed assignment of diagnostic peaks is presented in
(208) Spectral characterization of OA-NO.sub.2. The spectrum of OA-NO.sub.2 was acquired in phosphate buffer in the presence of the iron chelator DTPA (
(209) Characterization of OA-NO.sub.2 by GC-MS/MS. Capillary columns used for gas chromatography have high resolving capacity and can separate regio- and diasteroisomers. Thus, initial mass spectrometric characterization of OA-NO.sub.2 regioisomer methyl esters was performed by GC-MS (
(210) Characterization and quantitation of OA-NO.sub.2 by ESI-MS/MS. Using the gradient HPLC protocol described in Methods, synthetic OA-NO.sub.2 regioisomers eluted from the reverse phase column as two overlapping peaks (
(211) TABLE-US-00003 TABLE 3 Collision-induced dissociation fragments of nitroalkene fatty acid derivatives Nitroalkene derivatives of fatty acids were analyzed by electrospray- ionization tandem mass spectrometry. Product ion spectra from synthetic standards were obtained in the negative ion mode as described in Experimental Procedures. Major fragments generated for each standard are listed below. Mass/ charge (m/z) OA-NO.sub.2 [.sup.13C]OA-NO.sub.2 LNO.sub.2 344 [M-H] 326 [M-H] [M-H.sub.2O] 324 [M-H.sub.2O] 308 [M-H.sub.2O] [M-2H.sub.2O] 306 [M-H.sub.2O] 295 [M-HNO.sub.2] 293 [M-HNO] 279 [M-HNO.sub.2] 277 [M-HNO.sub.2] 264 [M-(2H.sub.2O + CO.sub.2)] 246 [M-(2H.sub.2O + CO.sub.2)] 244 [M-2H.sub.2O + CO.sub.2)]
(212) To quantitate OA-NO.sub.2 content in red cells and plasma, lipid extracts were separated using an isocratic HPLC elution protocol wherein analytes co-elute at 2 min; MRM transitions for OA-NO.sub.2 and [.sup.13C]OA-NO.sub.2 were monitored (not shown). The concentration of OA-NO.sub.2 in biological samples was determined from the ratio of analyte to internal standard peak areas using an internal standard curve that is linear over four orders of magnitude. The limit of quantitation (LOQ; determined as ten times the standard deviation of the noise) was calculated to be 1.2 fmol on column (not shown). Blood samples obtained from ten healthy human volunteers (5 female, 5 male, ages ranging from 24 to 51) revealed free OA-NO.sub.2 in red cells (i.e., OA-NO.sub.2 not esterified to glycerophospholipids or neutral lipids) to be 5911 pmol/ml packed cells (Table 4). Total free and esterified OA-NO.sub.2, the amount present in saponified samples, was 21476 pmol/ml packed cells. Thus, 75% of OA-NO.sub.2 in red cells exists as esterified fatty acids (9). In plasma, the free and esterified OA-NO.sub.2 concentrations were 61952 and 302369 nM, respectively, and were observed to be more abundant than linoleic acid nitration products (9).
(213) TABLE-US-00004 TABLE 4 Nitrated Oleic Acid in human blood a comparison with nitrated linoleic acid Venous blood was obtained from healthy human volunteers and centrifuged, and plasma and red cells were extracted and prepared for mass spectrometric analysis as described in Experimental Procedures. During sample preparation, [.sup.13C]OA-NO.sub.2 was added as an internal standard to correct for losses. OA-NO.sub.2 was quantitated by fitting analyte to internal standard area ratios obtained by MS to an internal standard curve. Concentration values for LNO.sub.2 in the vascular compartment were obtained from ref. 9. Data are expressed as mean std dev (n-10;5 female and 5 male). Compartment Fraction [OA-NO.sub.2] (nM) [LNO.sub.2] (nM) Plasma Free 619 52 79 35 Esterified 302 369 550 275 Total 921 421 630 240 Packed red cells Free 59 11 50 17 Esterified 155 65 199 121 Total 214 76 249 104 Whole Blood* Total 639 366* 477 128* *Assuming a 40% hematocrit
(214) Characterization of nitrohydroxy allylic derivatives. The initial survey to detect nitrated fatty acids indicated that nitrohydroxy allylic derivatives are also present in plasma and urine (
(215) The signaling actions of OA-NO.sub.2 as a PPAR ligand was assessed by evaluating its impact on adipocyte differentiation, as PPAR-dependent gene expression plays an essential role in the development of adipose tissue (25,26). 3T3-L1 preadipocytes were treated with OA-NO.sub.2 (1 M), LNO.sub.2 (3 M) and negative controls for two weeks (
(216) Discussion
(217) The nitration of hydrocarbons has long been recognized (27). Following the more recent discovery of vascular cell signaling actions of oxides of nitrogen (1,28), it is now also appreciated that NO-derived species mediate oxidation, nitrosation, nitrosylation and nitration reactions of protein, DNA and unsaturated fatty acids (29). These reactions frequently yield stable products that influence target molecule structure and function to either a) translate the signaling actions of NO or b) mediate pathogenic responses when occurring in excess.
(218) The reactions of NO and its redox-derived products with lipids is multifaceted. Model studies of photochemical air pollutant-induced lipid oxidation revealed that exceedingly high concentrations of nitrogen dioxide (NO.sub.2) could induce nitration of fatty acids in phosphatidylcholine liposomes and fatty acid methyl ester preparations (30-32). Subsequently, reaction systems designed to model the interactions of endogenous NO and NO-derived species [e.g., peroxynitrite (ONOO.sup.) and nitrous acid (HNO.sub.2)] with fatty acids showed that a) NO mediates potent inhibition of autocatalytic radical chain propagation reactions of lipid peroxidation (33,34) and b) NO-derived species produce both nitrated and oxidized derivatives of unsaturated fatty acids (3,35). One product of these reaction pathways, LNO.sub.2, is present at 500 nM concentration in healthy human red cells and plasma and serves as a ligand for the PPAR nuclear lipid receptor family (9,17). This insight, coupled with the fact that oleic acid is the most abundant unsaturated fatty acid in mammals and plants, motivated the present search for other potential endogenous nitrated fatty acid derivatives that might translate tissue redox signaling reactions.
(219) The structure of OA-NO.sub.2 (
(220) The nitro functional groups of OA-NO.sub.2 and LNO.sub.2 are located on olefinic carbons. This configuration imparts a unique chemical reactivity that enables the release of NO during aqueous decay of these nitroalkene derivatives via a modified Nef reaction (24). Furthermore, the -carbon proximal to the alkenyl nitro group is strongly electrophilic, which readily reacts with H.sub.2O via a Michael addition mechanism to generate nitrohydroxy adducts (
(221) Multiple mechanisms can support the basal and inflammatory nitration of fatty acids by NO-derived species, including NO.sub.2-initiated auto-oxidation of polyunsaturated fatty acids via hydrogen abstraction from the bis-allylic carbon and nitration by acidified NO.sub.2.sup. (31,38-42). Of relevance to both basal and inflammatory cell signaling, NO.sub.2 can be derived from multiple reactions. This includes the homolytic scission of both peroxynitrous acid (ONOOH) and nitrosoperoxocarbonate (ONOOCO.sub.2.sup.), as well as the oxidation of NO.sub.2.sup. by heme peroxidases (43,44). Present data supports that all of these alkenyl nitration mechanisms can yield nitrated fatty acids that are structurally similar or identical to the OA-NO.sub.2 and LNO.sub.2 detected clinically. Nitration by a free radical mechanism might suggest that all olefinic carbons within a fatty acid would be susceptible nitration targets; with the additional likelihood of double bond rearrangement and conjugation. The discovery of OA-NO.sub.2 lends critical perspective to this issue, because monounsaturated fatty acids are less susceptible to free radical-mediated hydrogen abstraction reactions. In view of the data presented herein, alternative fatty acid nitration mechanisms may thus also be viable. For example, nitration by an ionic addition reaction (e.g., nitronium ion, NO.sub.2.sup.+) can generate singly nitrated fatty acids with no double bond-rearrangement. Since NO.sub.2.sup.+ readily reacts with H.sub.2O, this species may require stabilization in the hydrophobic milieu of the membrane bilayer or localized catalysis (e.g., reaction of ONOO with transition metals) to serve as a biologically-relevant nitrating species. Finally, radical addition reactions may also occur with mono- and polyunsaturated fatty acids to yield non-conjugated nitroalkene derivatives of polyunsaturated fatty acids, as revealed by studies of acidified NO.sub.2.sup. and NO.sub.2-mediated fatty acid methyl ester oxidation and nitration profiles (32,41).
(222) Of important relevance to mechanisms underlying fatty acid nitration in vivo, the nitrohydroxy adducts of 9 unsaturated fatty acids examined in the present study (18:1, 18:2 and 18:3) all have a predominant fragment of m/z 171 (
(223) Designation of nitroalkene derivatives as a class of signaling molecules is contingent upon ascribing specific bioactivities to multiple members within the class at clinically-relevant concentrations. Nitrolinoleate has been observed to inhibit neutrophil and platelet function via cGMP-independent, cAMP-mediated mechanisms (10-12). Also, aqueous decay of LNO.sub.2 yields NO, a reaction that is facilitated by translocation of LNO.sub.2 from a hydrophilic to hydrophobic microenvironment, which in turn induces cGMP-dependent vessel relaxation (12,24). Recently, LNO.sub.2 has also been reported to serve as a robust ligand for PPAR (17), a nuclear hormone receptor that binds lipophilic ligands to induce DNA binding of the transcription factor complex at DR1-type motifs in the promoter sites of target genes. Downstream effects of PPAR activation include modulation of metabolic and cellular differentiation genes and regulation of inflammatory responses, adipogenesis and glucose homeostasis (45,46). In the vasculature, PPAR is expressed in monocytes, macrophages, smooth muscle cells and endothelium (47) and plays a central role in regulating the expression of genes related to lipid trafficking, cell proliferation and inflammatory signaling. Herein we show that OA-NO.sub.2 also serves as a PPAR, and ligand that rivals or exceeds the potency of LNO.sub.2 and synthetic PPAR ligands such as fibrates and thiazolidinediones (
(224) The regulation of inflammation by inhibiting eicosanoid synthesis is a well-established and prevalent target of anti-inflammatory drug strategies. Much less well-understood are the concerted cell signaling mechanisms by which inflammation is favorably resolved in vivo. While the integrated in vivo tissue signaling activities of nitrated fatty acids remain to be defined, studies to date indicate that these pluripotent signaling mediators generally manifest salutary metabolic and anti-inflammatory actions (10-12,17). The capability of redox-derived lipid signaling molecules to mediate the resolution of inflammation is a relatively new concept, with lipoxins representing one new class of lipid mediators that may also act in this manner (49). Endogenous concentrations of OA-NO.sub.2 and LNO.sub.2 are abundant and are increased by oxidative inflammatory reactions. Thus, nitrated fatty acids are expected to play both receptor-dependent (via PPAR ligand activity) and cyclic nucleotide-mediated roles in transducing the redox signaling actions of oxygen and NO, thereby regulating organ function, cell differentiation, cell metabolism and systemic inflammatory responses.
(225) Throughout Example 3, several publications have been referenced. These publications are listed in the Reference List for Example 3. The disclosures of these publications in their entireties are hereby incorporated by reference into this application in order to more fully describe the compounds, compositions and methods described herein.
REFERENCE LIST FOR EXAMPLE 3
Reference List
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Example 4
(227) The aqueous decay and concomitant release of nitric oxide (NO) by nitrolinoleic acid (10-nitro-9,12-octadecadienoic acid and 12-nitro-9,12-octadecadienoic acid; LNO.sub.2) is reported. Mass spectrometric analysis of reaction products support the Nef reaction as the mechanism accounting for the generation of NO by the aqueous reactions of fatty acid nitroalkene derivatives. Nitrolinoleic acid is stabilized by aprotic milieu, with LNO.sub.2 decay and NO release strongly inhibited by phosphatidylcholine-cholesterol liposome membranes and detergents when present at levels above their critical micellar concentrations. The release of NO from LNO.sub.2 was induced by the UV photolysis and I.sub.3-based ozone chemiluminescence reactions currently being used to quantify putative protein nitrosothiol (RSNO) and N-nitrosamine derivatives. This reactivity of LNO.sub.2 complicates the qualitative and quantitative analysis of biological oxides of nitrogen when applying UV photolysis and triiodide (I.sub.3.sup.)-based analytical systems in biological preparations typically abundant in nitrated fatty acids. These results reveal that nitroalkene derivatives of linoleic acid are pluripotent signaling mediators that act via not only receptor-dependent mechanisms, but also by transducing the signaling actions of NO via pathways subject to regulation by the relative distribution of LNO.sub.2 to hydrophobic versus aqueous microenvironments.
(228) Nitrolinoleic acid (10-nitro-9,12-octadecadienoic acid and 12-nitro-9,12-octadecadienoic acid; abbreviated as LNO.sub.2) is present in plasma lipoproteins and red blood cell membranes at concentrations of 500 nM, rendering this species the most quantitatively abundant biologically-active oxide of nitrogen in the human vascular compartment (1). Nitrolinoleic acid is a product of nitric oxide (NO)-dependent linoleic acid nitration reactions that predominantly occur at the C10 and C12 alkene carbons. The positional isomer distribution of the LNO.sub.2 alkenyl nitro group indicates that in vivo fatty acid nitration is a consequence of nucleophilic (nitronium group, NO.sub.2.sup.+) and/or radical (nitrogen dioxide, NO.sub.2) addition reactions with olefinic carbons.
(229) Recent observations reveal that LNO.sub.2 is a pluripotent signaling mediator that acts via both receptor-dependent and -independent pathways. Nitrated fatty acids are specific and high affinity endogenous ligands for peroxisome proliferator-activated receptors (2), and serve to activate receptor-dependent gene expression at physiological concentrations. LNO.sub.2 also activates cAMP-dependent protein kinase signaling pathways in neutrophils and platelets, serving to down-regulate the activation of these inflammatory cells (3,4). Finally, LNO.sub.2 induces vessel relaxation in an endothelial-independent manner (5). This LNO.sub.2-mediated relaxation of phenylephrine-preconstricted aortic rings was 1) a consequence of LNO.sub.2-induced stimulation of smooth muscle cell and aortic segment cGMP content, 2) inhibitable by the NO scavenger oxyhemoglobin and 3) ODQ-inhibitable (e.g., guanylate cyclase-dependent). Although these vessel responses to LNO.sub.2 suggest NO as the mediator of guanylate cyclase activation, the identity of the proximal LNO.sub.2-derived, cGMP-dependent signaling molecule was not directly identified (5).
(230) Nitric oxide, synthesized by three different nitric oxide synthase isoforms, was first shown to mediate endothelial-dependent relaxation via reaction with the heme iron of guanylate cyclase and subsequent activation of cGMP-dependent protein kinases (6). Subsequent to this discovery, there has been a growing appreciation that the cell signaling actions of NO are also transduced by secondary products derived from redox reactions of NO. These redox reactions yield a variety of oxides of nitrogen displaying both unique and overlapping reactivities that can regulate differentiated cell function via both cGMP- and non-cGMP-dependent mechanisms. These products include nitrite (NO.sub.2.sup.), NO.sub.2, peroxynitrite (ONOO.sup.), nitrosothiols (RSNO) and dinitrogen trioxide (N.sub.2O.sub.3). These reactive species serve to transduce the cell signaling actions of NO by inducing changes in target molecule structure and function via oxidation, nitration or nitrosation reactions (7,8).
(231) The lipophilicity and intrinsic chemical reactivities of NO facilitate multiple interactions with lipids that impact both cellular redox and NO signaling reactions. For example, NO concentrates in membranes and lipoproteins, where it more readily reacts with oxygen to yield oxidizing, nitrosating and nitrating species such as N.sub.2O.sub.3 and N.sub.2O.sub.4(9-11). In these lipophilic compartments, NO can react with lipid peroxyl radicals (LOO.) at diffusion-limited rates, readily out-competing tocopherols and ascorbate for the scavenging of intermediates that would otherwise propagate lipid oxidation. In this regard, NO displays an oxidant-protective, anti-inflammatory role (12,13). Of relevance to inflammatory signaling, heme and non-heme-containing peroxidases and oxygenases that catalyze physiologic and pathologic fatty acid oxygenation reactions also catalytically consume NO during enzyme turnover [e.g., lipoxygenases (14,15), cyclooxygenase (16) and myeloperoxidase (17)]. The reaction of NO with these enzymatic catalysts and free radical intermediates of fatty acid oxygenation in turn inhibits rates of fatty acid oxygenation product formation. The convergence of NO and fatty acid oxygenation reactions thus can influence the steady state concentration of both NO and eicosanoids in a concerted fashion.
(232) Redox reactions of NO frequently induce the chemical modification of target molecules, including the nitrosylation (addition of NO) of heme proteins (18), the nitrosation (addition of the nitroso group NO) of thiol substituents (7) and the nitration (addition of the nitro group NO.sub.2) of protein tyrosine residues and DNA bases (8). Herein, the present invention shows that LNO.sub.2, a product of NO-dependent unsaturated fatty acid nitration reactions that is abundant in red cells and plasma, decays in aqueous milieu to release NO. This generation of NO by LNO.sub.2 is inhibited by aprotic environments, a milieu that concomitantly stabilizes LNO.sub.2. Moreover, it is shown that UV photolysis and I.sub.3.sup.-based chemiluminescence approaches currently used to quantify NO derived from protein heme-nitrosyl, RSNO and N-nitrosamine (RNNO) derivatives, also facilitate NO release from LNO.sub.2. This complicates the interpretation of quantitative and qualitative results from the application of these analytical systems in biological preparations. In aggregate, these results reveal that nitroalkene derivatives of fatty acids serve to transduce the signaling actions of NO via pathways subject to regulation by the relative distribution of LNO.sub.2 to hydrophobic versus aqueous microenvironments.
(233) MaterialsHorse heart myoglobin, octyl-P3-glucopyranoside (OG) and octyl-thio--glucopyranoside (OTG), carboxy 2-phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (cPTIO), diethylenetriarninepentaacetate (DTPA), Na.sub.2HPO.sub.4 and sodium dithionite were from Sigma (St Louis, Mo.). LNO.sub.2 and [.sup.13C]LNO.sub.2 were synthesized and purified as previously described (1). Metmyoglobin was reduced using sodium dithionite, desalted by exclusion chromatography on a Sephadex PD-10 column and further oxygenated by equilibration with 100% oxygen.
(234) Electron paramagnetic resonanceEPR measurements were performed at room temperature using a Bruker Elexsys E-500 spectrometer equipped with an ER049X microwave bridge and an AquaX liquid sample cell. The following instrument setting were used: modulation frequency, 100 kHz; modulation amplitude, 0.05 G; receiver gain, 60 dB; time constant, 1.28 ms; sweep time, 5.24 s; center field, 3510 G; sweep width, 100 G; power, 20 mW; scan parameter, 16 scans.
(235) SpectrophotometryThe UV spectrum of LNO.sub.2 and repetitive scans of LNO.sub.2 decay kinetics were collected using a Hitachi UV 2401 PC spectrophotometer. Apparent NO formation was calculated from extents of oxymyoglobin oxidation in the visible wavelength range (spectrum) and at 580 nm (kinetic mode). Initial oxymyoglobin oxidation was calculated using a UV probe Version 1.10 (.sub.580 14.4 mM.sup.1 cm.sup.1). Decomposition of the NO.sub.2 group was followed at 268 nm and the appearance of oxidized products at 320 nm.
(236) Liposome preparationReverse phase evaporation liposomes were formed from dipalmitoylphosphatidylcholine (DPPC), cholesterol and stearylamine (4:2:1 mole ratio) following an established procedure (19). Briefly DPPC, cholesterol and stearylamine were dissolved in CHCl.sub.3 and sonicated with 10 mM KPi buffer (CHCl.sub.3/KPi, 2:1, v/v). The organic solvent was then removed by evaporation under reduced pressure at 45 C. The liposomes were allowed to anneal for 12 h at room temperature then centrifuged and the pellet resuspended in the experimental buffer.
(237) Chemiluminescence and UV photolysis analysesFor direct detection of NO release, LNO.sub.2 (75 M) was incubated directly or with different additions (sulfanilamide, 1.5% w/v in 2 M HCl, 5 min, 25 C., with or without HgCl.sub.2, 50 mM) under aerobic conditions in a capped vial for 3 min. The gas phase was then injected into a chemiluminescence detector (ANTEK Instruments, Houston, Tex.). Additionally, known concentrations of DEA-NONOate (in 10 mM NaOH) were added to a capped vial containing 0.5 M HCl. NOx concentration profiles of plasma samples were performed by NO chemiluminescence analysis. Measurement of putative NO.sub.2.sup., RSNO, and other NO derivatives present in plasma was performed by using an I.sub.3.sup.-based reducing system as previously (20,21). Rats were treated by intraperitoneal injection of 50 mg/kg E. coli LPS and 5 hr later blood was collected in EDTA anticoagulation tubes following cardiac puncture. Following removal of red cells by centrifugation (500 g10 min), plasma samples were pretreated with either sulfanilamide (final concentration 1.5% w/v in 2 M HCl, 5 min, 25 C.) with or without HgCl.sub.2 (50 mM) prior to injecting into the chemiluminescence detector to measure NO.sub.2.sup. and HgCl.sub.2-resistant NO.sub.x derivatives, respectively. For UV photolysis studies, a water-cooled reaction chamber was filled with 1 ml of phosphate buffer (50 mM, pH 7.4 containing 10 M DTPA) and continuously bubbled with argon. The chamber was illuminated using an ILC PS300-1A xenon arc source (ILC Technology, Sunnyvale, Calif.). Samples were injected into the reaction chamber through an air-tight septum and released NO was passed to the reaction chamber of a Sievers NOA 280 NO analyzer and detected by chemiluminescence after reaction with ozone (O.sub.3).
(238) Mass spectrometric analysisLNO.sub.2 was extracted using the method of Bligh and Dyer (22). During extraction, [.sup.13C]LNO.sub.2 was added as internal standard and the LNO.sub.2 content of samples quantified using LC/MS/MS (1). Qualitative and quantitative analysis of LNO.sub.2 by ESI MS/MS was performed using a hybrid triple quadrupole-linear ion trap mass spectrometer (4000 Q trap, Applied Biosystems/MDS Sciex) as described (1). For the detection and characterization of L(OH)NO.sub.2, the hydration product of LNO.sub.2 generated by a Michael-like addition between H.sub.2O and the nitroalkene, LNO.sub.2 (3 M) was incubated at 25 C. for 60 min in 100 mM phosphate buffer containing 100 M DTPA pH 7.4 and extracted (Bligh and Dyer). L(OH)NO.sub.2 was detected using a multiple reaction monitoring (MRM) scan mode by reporting molecules that undergo an m/z 342/295 mass transition. This method selects (m/z 342) in the first quadrupole, consistent with the precursor ion, and following collision-induced dissociation (CID) yields in Q3 a species (m/z 295) consistent with loss of the nitro group ([M-(HNO.sub.2)].sup.). Presence of the nitrohydroxy-adduct was confirmed by product ion analysis of m/z 342. The degradation of LNO.sub.2 to secondary products was followed in negative ion mode after chloroform extraction and direct injection into an ion trap mass spectrometer with electrospray ionization (LCQ Deca, ThermoFinnigan).
(239) Characterization of NO release from LNO.sub.2cPTIO is a selective spin trap for NO (k=10.sup.4 M.sup.1s.sup.1, (23), with the product of this reaction, cPTI, displaying a characteristic EPR spectrum. In order to determine if NO is derived from LNO.sub.2, it was incubated at 25 C. for different times in 100 mM phosphate buffer containing 100 M DTPA, pH 7.4 in the presence of cPTIO. This resulted in a time-dependent decrease of the characteristic five peak cPTIO signal and the appearance of a new signal ascribed to cPTI (
(240) LNO.sub.2 was incubated with oxymyoglobin in 100 mM phosphate buffer containing 100 M DTPA, pH 7.4 and NO-dependent oxymyoglobin oxidation was followed spectrophotometrically. LNO.sub.2 oxidized oxymyoglobin in a dose- and time-dependent fashion, yielding metmyoglobin as indicated by the spectral changes depicted in
(241) Nitrite formation during LNO.sub.2 decompositionDuring LNO.sub.2-dependent NO formation, measured via oxymyoglobin oxidation and MS analysis of LNO.sub.2 parent molecule loss in aqueous buffers, the stable NO oxidation product NO.sub.2 accumulates with time (
(242) Chemiluminescence analysis of LNO.sub.2-derived NOGas phase O.sub.3-mediated chemiluminescence detection of NO is a highly sensitive and specific method for detecting NO. LNO.sub.2 was incubated in capped vials in 100 mM phosphate buffer, 100 M DTPA, pH 7.4 in air and the gas phase directly injected into the detector. The NO-dependent chemiluminescence yield was a function of concentration of DEA-NONOate and LNO.sub.2 concentrations, studied separately (
(243) UV photolysis has been used to quantitate RSNO derivatives of proteins and other NO-containing biomolecules (25,26). When LNO.sub.2 (4 nmol) was subjected to UV photolysis in concert with NO chemiluminescence detection, UV light exposure stimulated NO release from LNO.sub.2 (
(244) Appreciating that nitroalkene derivatives of red cell membrane and plasma fatty acids are present in human blood, whether LNO.sub.2-derived NO has the potential to interfere with the chemiluminescent detection of NO.sub.2.sup., RSNO, RNNO or NO-heme compounds in plasma, when also analyzed via a triiodide (I.sub.3.sup.)-based reaction system (21) was examined. Plasma from LPS-treated rats was used to exemplify this reaction system, since LPS treatment of rodents induces a robust elevation in plasma biomolecule NO-adduct levels (27). First, plasma was directly injected into the detector chamber and I.sub.3.sup. reagent added, yielding a signal indicative of net plasma NO.sub.2.sup., RSNO, RNNO and NO-heme compounds (
(245) Hydrophobic stabilization of LNO.sub.2The observation that LNO.sub.2 is stable in organic solvents such as n-octanol, undergoing decay only after solvation in aqueous solutions, led us to analyze rates of NO formation from LNO.sub.2 in the presence of non-ionic detergents. The formation of NO was followed by EPR (measuring cPTI formation) in the presence of different concentrations of octyl--glucopyranoside (OG) and octyl-thio--glucopyranoside (OTG). The rate of NO release was constant and not influenced by these detergents until the critical micellar concentration (CMC) for each was achieved, after which NO formation was inhibited as the volume of the hydrophobic environment increased (
(246)
where k is the rate constant for aqueous breakdown, is the fraction of total volume that is the hydrophobic volume, and K (hydrophobic/aqueous concentration ratio) is the partition constant for LNO.sub.2. Thus, a plot of 1/v vs. will yield a linear plot with slope divided by y-axis intercept equal to K1.
(247) For evaluating the stability of LNO.sub.2 in bilayers rather than micelles, phosphatidylcholine-cholesterol liposomes prepared by reverse phase evaporation were utilized (3:1). This alternative hydrophobic bilayer environment also resulted in a dose-dependent inhibition of the release of NO from LNO.sub.2, as detected by EPR analysis of cPTI formation from cPTIO (
(248) The decay of LNO.sub.2 in aqueous solutions results in the formation of multiple secondary fatty acid-derived products, as well as NO. One pathway that may be involved in aqueous LNO.sub.2 decay is the Michael-like addition reaction with H.sub.2O at the carbon of the nitroalkene moiety. To test this possibility, and the influence of micellar stabilization of LNO.sub.2, the formation of nitrohydroxylinoleic acid (L(OH)NO.sub.2, m/z 342) was analyzed by MS. LNO.sub.2-derived L(OH)NO.sub.2 was evident after 60 min incubation in aqueous buffer at pH 7.4, with a concomitant decrease in LNO.sub.2 levels (m/z 324). Addition of OTG at a concentration above the CMC significantly decreased extents of L(OH)NO.sub.2 formation (
(249) The release of NO by LNO.sub.2 via a modified Nef reaction mechanism was further supported by detecting an aqueous degradation product with m/z 293 (
(250) Nitrolinoleic acid is a pluripotent signaling molecule that exerts its bioactivity by acting as a high affinity ligand for PPAR (2), activating protein kinase signaling cascades and, as shown herein, by serving as a hydrophobically-stabilized reserve for NO. The activation of PPAR-dependent gene expression by LNO.sub.2 requires this ligand to be stabilized and transported as the intact nitroalkene to the nuclear receptor (2). The mechanism(s) involved in protein kinase activation by LNO.sub.2 remain unclear, but can include direct ligation of receptors at the plasma membrane and/or covalent modification and activation of signaling mediators via Michael addition reactions. Current data reveals that the signaling actions of LNO.sub.2 are multifaceted, with the activation of protein kinases and/or PPAR receptor activation not fully explaining observed cellular responses, such as the stimulation of cGMP-dependent vessel relaxation (5). The observation herein that LNO.sub.2 decay yields NO and that LNO.sub.2 is subject to hydrophobic stabilization thus lends additional perspective to our understanding of how compartmentalization will influence the nature of cell signaling reactions mediated by fatty acid nitroalkene derivatives.
(251) A central challenge in detecting NO generation by relatively slow-releasing compounds (e.g., RSNO and organonitrate derivatives) is the risk of lack of specificity and sensitivity. This is especially the case when concurrent oxygen, heme, lipid, protein and probe-related redox reactions are possible. Quantitative rigor is also always a concern. To circumvent these problems, multiple approaches for the qualitative and quantitative detection of NO generation by LNO.sub.2 were employed herein. The release of NO by LNO.sub.2 was assessed quantitatively by spectrophotometric analysis of oxymyoglobin oxidation. Additional qualitative proof of LNO.sub.2-derived NO release came from EPR analysis of NO-dependent cPTI formation, NO-dependent chemiluminescence following reaction with O.sub.3 and mass spectroscopic detection of anticipated decay products of LNO.sub.2. Also, in aqueous solutions and in the absence of alternative reaction pathways, 4 mol NO react with 1 mol O.sub.2 to ultimately yield 4 mol NO.sub.2.sup.. Thus, formation of NO.sub.2.sup. was used as additional evidence for NO formation. The yield of NO.sub.2.sup. during LNO.sub.2 decay was 3.5 fold lower than predicted from more direct NO measurements based on oxymyoglobin oxidation. Several explanations can account for this apparent discrepancy. First, in the absence of NO scavengers, NO rapidly equilibrates with the gas phase, thus decreasing NO available for oxidation to NO.sub.2.sup.. Second, NO reactions with carbonyl, hydroxyl and peroxyl radicals are extremely fast [k>110.sup.10 M.sup.1s.sup.1, (29)]. These free radical intermediates are likely formed during LNO.sub.2 decomposition, as evidenced by products with mass to charge ratio 340 and 356 (
(252) The gas-phase chemiluminescence reaction of NO with O.sub.3 is a highly sensitive and specific method for detecting NO and nitroso-derivatives of biomolecules. One widely utilized analytical strategy relies on the reductive cleavage of NO.sub.2.sup. and nitroso-derivatives by I.sub.3.sup.. Treatment of samples with acidic sulfanilamide and HgCl.sub.2 permits additional discrimination between heme-NO, NO.sub.2.sup., and putative RSNO and RNNO derivatives (20, 21, 25-28). The latter HgCl.sub.2-resistant species [proposed as RNNO, (20)] may be best termed XNO.sub.x at this juncture, since LNO.sub.2 also yields O.sub.3 chemiluminescence following reaction with acidified sulfanilamide and HgCl.sub.2 prior to injecting into iodine/triiodide mixtures and the detection chamber. These data reveal that a contribution of fatty acid nitroalkene derivatives to the measurement of various tissue biomolecule NO derivatives must additionally be considered. Of additional interest, the UV photolysis approach for NO.sub.x detection in biological samples directly stimulates decay of LNO.sub.2 to yield NO. This new insight thus raises significant concern about the accuracy of reported concentrations for NO-derived species using UV photolysis, since nitrated fatty acids are the most prevalent bioactive oxides of nitrogen yet found in vivo (1). Protein fractionation via solvent extraction (e.g., acetone) prior to analysis of NO derivatives in biological samples does not eliminate the possibility that nitrated fatty acids are a source of detectable or RSNO-like NO formation by UV photolysis, as LNO.sub.2 and other nitroalkenes readily partition into the polar phase of many extraction strategies including those employing acetone.
(253) The observation that LNO.sub.2 undergoes decay reactions to yield NO in aqueous solution initially raised concern regarding how a significant and consistent LNO.sub.2 content in plasma and red cells of healthy humans could be detected at near-micromolar concentrations (1). Appreciating that synthetic LNO.sub.2 is stable in methanol suggested that the ionic microenvironment in which LNO.sub.2 was solvated would significantly modulate stability. To first address the possibility that LNO.sub.2 is stabilized by hydrophobic environments reminiscent of membranes and lipoproteins, it was observed that NO release from LNO.sub.2 was inhibited upon LNO.sub.2 solvation in n-octanol. Further analysis using non-ionic detergent micelles, wherein the relatively hydrophobic NO.sub.2 group of LNO.sub.2 is expected to partition into non-polar microenvironments, revealed that LNO.sub.2 decomposition and NO release was inhibited (
(254) The mechanisms accounting for NO release from organic nitrites and nitrates are controversial, appear to be multifaceted and remain to be incisively defined. For example, the nitrate ester derivative nitroglycerin (NTG) has been used as a vasodilator for more than a century in the treatment of angina pectoris. Nitroglycerin does not directly decay to yield NO or an NO-like species that will activate soluble guanylate cyclase (sGC), rather cellular metabolism is required to yield a species capable of NO-like activation of sGC. While several enzymes are identified as competent to mediate the denitration and bioactivation of NTG (e.g., xanthine oxidoreductase, cytochrome P450 oxidase and reductase, old yellow protein and mitochondrial aldehyde dehydrogenase-2), detailed insight is lacking as to unified redox chemistry, enzymatic and cellular mechanisms accounting for a) the 3 e-reduction of nitrate to an NO-like species and b) the attenuated NTG metabolism that occurs during nitrate tolerance (30).
(255) The present report of non-enzymatic release of NO from endogenous fatty acid nitroalkene derivatives (e.g., LNO.sub.2) lends additional perspective to how nitric oxide synthase-dependent NO signaling can be transduced. It is shown via 3 different analytical approaches that the product of LNO.sub.2 decay is unambiguously NO. Mass spectrometric analysis and LNO.sub.2 decay studies reported herein, in concert with previous understanding of the chemical reactivity of nitroalkenes, reveals a viable mechanism for how nitrated fatty acids can serve to transduce tissue NO signaling capacity (Schemes 1 and 2).
(256) The release of NO by a vicinal nitrohydroxy arachidonic acid derivative detected in cardiac lipid extracts has been proposed (31) These derivatives induce vasorelaxation of rat aortic rings via possible NO-dependent activation of guanylate cyclase. The intermediate formation of an analogous hydroxy derivative of nitrolinoleate, L(OH)NO.sub.2, is documented herein to occur during LNO.sub.2 decay in aqueous milieu (
(257) A more viable mechanism accounting for NO release by nitroalkenes is supported by 1) mass spectroscopic detection of expected decay products and 2) the aqueous and pH dependency of this process (
(258) The original Nef reaction entails complete deprotonation of an alkyl nitro compound with base to yield the nitroanion, followed by quenching with aqueous acid to cause hydrolysis to the corresponding carbonyl compound and oxides of nitrogen. Most Nef reactions are now performed using additional oxidants or reductants, rather than the simple acid-base chemistry of the original reaction (36-44). There are a few noteworthy points about this proposed mechanism that relate to how NO can be ultimately produced. The nitrogen-containing product of the original Nef reaction is N.sub.2O, a stable oxide of nitrogen that would not be a precursor to NO under the neutral aqueous conditions used herein to model biologically-relevant LNO.sub.2 decay. The initial oxide of nitrogen formed, HNO, is unstable and quickly disproportionates to form N.sub.2O as shown in Scheme 2 (
(259) In Scheme 2 (
(260) These proposed mechanisms for NO formation from LNO.sub.2 provided the testable hypothesis for how nitrated fatty acids can serve as a source of NO using simple acid/base chemistry with no additional oxidants or reductants. Mass spectrometric detection of expected oxidized fatty acid products and direct detection of NO formation supported this pathway of nitroalkene decay. This acid/base chemistry could also be employed by as-yet-undescribed enzymes that could catalyze physiologically-significant extents of NO release from the multiple lipid nitroalkene derivatives now being observed (32).
(261) Therapeutic agents that release NO are a rapidly expanding area of drug design. Dual-acting nitro and nitroso derivatives of existing drugs have been synthesized and are being studied for efficacy in treating diabetes, metabolic syndrome, hypertension and atherosclerosis. These include NO-releasing statin derivatives and NO-non-steroidal anti-inflammatory derivatives such as NO-acetacylic acid, NO-ibuprofen and NO-piroxicam. These adducts were devised based on the precept that an NO donor moiety will augment therapeutic breadth and value. This class of pharmaceuticals are of particular relevance when alterations in endogenous NO signaling contributes to tissue pathogenesis. In this regard, LNO.sub.2 shares similarities with these classes of chimeric inflammatory-regulating compounds, as LNO.sub.2 is a potent endogenous PPAR agonist that rivals extents of PPAR activation induced by similar concentrations of thiazolidinediones (2). Herein, the present invention shows that LNO.sub.2 also has the capability to release NO in a regulated manner. Thus, the potential signaling actions of LNO.sub.2 are expected to be pluripotent in nature.
(262) In summary, NO-mediated oxidative reactions with unsaturated fatty acids yield nitroalkene derivatives. Once formed, nitrated fatty acids are hydrophobically stabilized by lipid bilayers and lipoproteins or alternatively, can be redistributed to aqueous environments to release NO via a Nef-like reaction. In its native form, LNO.sub.2 also activates nuclear PPAR receptor-mediated regulation of gene expression. These combined actions are expected to transduce the salutary inflammatory signaling reactions that have been described for both NO and LNO.sub.2. Because LNO.sub.2 production is increased by oxidative inflammatory reactions, this species thus represents an adaptive mediator that regulates potentially pathogenic tissue responses to inflammation.
(263) Throughout Example 4, several publications have been referenced. These publications are listed in the Reference List for Example 4. The disclosures of these publications in their entireties are hereby incorporated by reference into this application in order to more fully describe the compounds, compositions and methods described herein.
REFERENCE LIST FOR EXAMPLE 4
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Schopfer, F. J., Baker, P. R., and Freeman, B. A. (2003) Trends Biochem.Sci. 28, 646-654 9. Denicola, A., Souza, J. M., and Radi, R. (1998) ProcNatl.Acad.Sci. U.S.A 95, 3566-3571 10. Denicola, A., Batthyany, C., Lissi, E., Freeman, B. A., Rubbo, H., and Radi, R. (2002) J.Biol.Chem. 277, 932-936 11. Liu, X., Miller, M. J., Joshi, M. S., Thomas, D. D., and Lancaster, J. R., Jr. (1998) ProcNatl.Acad.Sci. U.S.A 95, 2175-2179 12. O'Donnell, V. B., Chumley, P. H., Hogg, N., Bloodsworth, A., Darley-Usmar, V. M., and Freeman, B. A. (1997) Biochemistry 36, 15216-15223 13. Rubbo, H., Radi, R., Anselmi, D., Kirk, M., Barnes, S., Butler, J., Eiserich, J. P., and Freeman, B. A. (2000) J.Biol.Chem. 275, 10812-10818 14. Coffey, M. J., Natarajan, R., Chumley, P. H., Coles, B., Thimmalapura, P. R., Nowell, M., Kuhn, H., Lewis, M. J., Freeman, B. A., and O'Donnell, V. B. (2001) ProcNatl.Acad.Sci. U.S.A 98, 8006-8011 15. O'Donnell, V. B., Taylor, K. B., Parthasarathy, S., Kuhn, H., Koesling, D., Friebe, A., Bloodsworth, A., Darley-Usmar, V. M., and Freeman, B. A. (1999) J.Biol.Chem. 274, 20083-20091 16. O'Donnell, V. B., Coles, B., Lewis, M. J., Crews, B. C., Marnett, L. J., and Freeman, B. A. (2000) J.Biol.Chem. 275, 38239-38244 17. Eiserich, J. P., Baldus, S., Brennan, M. L., Ma, W., Zhang, C., Tousson, A., Castro, L., Lusis, A. J., Nauseef, W. M., White, C. R., and Freeman, B. A. (2002) Science 296, 2391-2394 18. Arnold, W. P., Mittal, C. K., Katsuki, S., and Murad, F. (1977) ProcNatl.Acad.Sci. U.S.A 74, 3203-3207 19. Szoka, F., Jr. and Papahadjopoulos, D. (1980) Annu.Rev.Biophys.Bioeng. 9, 467-508 20. Feelisch, M., Rassaf, T., Mnaimneh, S., Singh, N., Bryan, N. S., Jourd'heuil, D., and Kelm, M. (2002) FASEB J. 16, 1775-1785 21. Gladwin, M. T., Wang, X., Reiter, C. D., Yang, B. K., Vivas, E. X., Bonaventura, C., and Schechter, A. N. (2002) J.Biol.Chem. 277, 27818-27828 22. Bligh, E. G. and Dyer, W. L. (1959) Can.J.Biochem.Physiol. 37, 911-917 23. Akaike, T., Yoshida, M., Miyamoto, Y., Sato, K., Kohno, M., Sasamoto, K., Miyazaki, K., Ueda, S., and Maeda, H. (1993) Biochemistry 32, 827-832 24. Hogg, N., Singh, R. J., Joseph, J., Neese, F., and Kalyanaraman, B. (1995) Free Radic.Res. 22, 47-56 25. McMahon, T. J., Moon, R. E., Luschinger, B. P., Carraway, M. S., Stone, A. E., Stolp, B. W., Gow, A. J., Pawloski, J. R., Watke, P., Singel, D. J., Piantadosi, C. A., and Stamler, J. S. (2002) Nat.Med. 8, 711-717 26. Stamler, J. S., Jaraki, O., Osborne, J., Simon, D. I., Keaney, J., Vita, J., Singel, D., Valeri, C. R., and Loscalzo, J. (1992) ProcNatl.Acad.Sci. U.S.A 89, 7674-7677 27. Crawford, J. H., Chacko, B. K., Pruitt, H. M., Piknova, B., Hogg, N., and Patel, R. P. (2004) Blood 104, 1375-1382 28. Janero, D. R., Bryan, N. S., Saijo, F., Dhawan, V., Schwalb, D. J., Warren, M. C., and Feelisch, M. (2004) ProcNatl.Acad.Sci. U.S.A 101, 16958-16963 29. Padmaja, S. and Huie, R. E. 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Example 5
(265) The nitroalkenes of the present invention also display regulatory actions towards the expression of genes related to inflammatory responses, cell growth, cell differentiation, cell signaling, cell death (apoptosis) and metabolism. For example, nitrolinoleate regulates gene expression in human vascular endothelial cells and macrophages. Cells were stimulated with vehicle and linoleic acid (2.5 M, the latter two treatments as controls) and LNO2O (2.5 mM) for 24 hours. The total RNA was purified with a Qiagen Kit and analyzed with a Whole Human Genome Oligo Array (G4112A, 41K Genes, Agilent). Results showed that nitrolinoleate regulates >5000 genes, with statistically-significant up-regulation of >2300 genes and down-regulation of >3000 genes. In contrast, the native (precursor) fatty acid, linoleic acid, only regulates 14 genes, with an up-regulation of 5 genes and the down-regulation of 9 genes.
(266) Therefore, the present invention also provides for the selective regulation of clinically significant genes by nitrolinoleate. Table 5 lists examples of genes down-regulated by nitrolineate that are associated with cell signaling, growth, differentiation, metabolism, inflammatory responses, migration and apoptosis. Table 5 also includes genes involved in the Jak/STAT signaling pathway, the NF-B pathway and the P13K/Akt pathway. The genes listed in Table 5 can be involved in one or more processes associated with cell signaling, growth, differentiation, metabolism, inflammatory responses, migration and apoptosis. These genes can also be involved in one or more pathways selected from the group consisting of the Jak/STAT signaling pathway, the NF-B pathway and the P13K/Akt pathway.
(267) TABLE-US-00005 TABLE 5 Selected genes down-regulated by nitrolineate (>1.5 fold, p < 0.05) RAC2; ras-related C3 botulinum toxin substrate 2 (rho 2.47 family, small GTP binding protein Rac2) CDC2; cell division cycle 2, G1 to S and G2 to M 2.75 CDC42; cell division cycle 42 (GTP binding protein, 1.65 25 kDa) CCND3; cyclin D3 1.51 CCNE1; cyclin E1 1.58 CAMK1; calcium/calmodulin-dependent protein kinase I 2.24 TCF4; transcription factor 4 2.63 PPARGC1B; peroxisome proliferative activated 2.20 receptor, gamma, coactivator 1, beta RB1; retinoblastoma 1 (including osteosarcoma) 2.06 TNF; tumor necrosis factor (TNF superfamily, member 2) 2.01 TYK2; tyrosine kinase 2 2.00 STAT1; signal transducer and activator of transcription 1.74 1, 91 kDa CAV3; caveolin 3 1.76 EDARADD; EDAR-associated death domain 1.69 DAPK2; death-associated protein kinase 2 1.73 CASP8AP2; CASP8 associated protein 2 1.52 ITR; intimal thickness-related receptor 1.68
Table 6 lists additional genes that are also down-regulated by nitrolineate and are associated with cell signaling, growth, differentiation, metabolism, inflammatory responses, migration and apoptosis
(268) TABLE-US-00006 TABLE 6 Down-regulated genes (>1.5 fold, p < 0.05). Genes associated with cell signaling, growth, differentiation, metabolism, inflammatory responses, migration and apoptosis TGFBI; 9.80 ILK; integrin-linked kinase 2.94 MAPKAPK3; mitogen-activated 2.18 transforming protein kinase-activated protein growth factor, kinase 3 beta-induced, 68 kDa PLAU; 7.58 EGR2; early growth response 2.65 ADRB2; adrenergic, beta-2-, 2.04 plasminogen 2 (Krox-20 homolog, receptor, surface activator, Drosophila) urokinase VASP; 4.85 FDPS; farnesyl diphosphate 2.46 IL11; interleukin 11 2.02 vasodilator- synthase (farnesyl stimulated pyrophosphate synthetase, phosphoprotein dimethylallyltranstransferase, geranyltranstransferase) AIF1; allograft 3.95 TGFB1; transforming growth 2.46 PIK3CB; phosphoinositide-3- 1.93 inflammatory factor, beta 1 (Camurati- kinase, catalytic, beta factor 1 Engelmann disease) polypeptide PTGS1; 3.95 IRS1; insulin receptor 2.40 TIMP2; tissue inhibitor of 1.92 prostaglandin- substrate 1 metalloproteinase 2 endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) PTGES2; 1.59 PDGFRA; platelet-derived 2.36 TLR2; toll-like receptor 2 1.89 prostaglandin E growth factor receptor, alpha synthase 2 polypeptide E2F2; E2F 3.70 RACGAP1; Rac GTPase 2.35 LDLR; low density lipoprotein 1.77 transcription activating protein 1 receptor (familial factor 2 hypercholesterolemia) NCOR2; nuclear 1.59 NCR1; natural cytotoxicity 2.30 CARD9; caspase recruitment 3.33 receptor co- triggering receptor 1 domain family, member 9 repressor 2 SRF; serum 1.56 PDGFA; platelet-derived 2.27 FLJ23091; putative NFkB 1.74 response factor growth factor alpha activating protein 373 (c-fos serum polypeptide response element-binding transcription factor) BCL2A1; 3.50 TIMP1; tissue inhibitor of 3.62 PDGFC; platelet derived growth 1.72 BCL2-related metalloproteinase 1 factor C protein A1 (erythroid potentiating activity, collagenase inhibitor) CARD9; 3.33 TIMP3; tissue inhibitor of 2.27 ARHGEF1; Rho guanine 1.64 caspase metalloproteinase 3 (Sorsby nucleotide exchange factor recruitment fundus dystrophy, (GEF) 1 domain family, pseudoinflammatory) member 9 FN1; fibronectin 1 3.33 MMP19; matrix 1.58 JUNB; jun B proto-oncogene 1.60 metalloproteinase 19 PPARD; 3.12 CAMK1; 2.24 MYLK; myosin, light 3.13 peroxisome calcium/calmodulin- polypeptide kinase proliferative dependent protein kinase I activated receptor, delta MAPKAPK3; mitogen- 2.18 ROCK1; Rho-associated, coiled- 1.59 activated protein kinase- coil containing protein kinase 1 activated protein kinase 3 IGF1; insulin-like growth factor 1.54 1 (somatomedin C) VEGFB; vascular endothelial 1.51 growth factor B ECGF1; endothelial cell growth 1.73 factor 1 (platelet-derived)
Table 7 provides gene that are up-regulated by nitrolinoleate. These genes are associated with apoptosis, cell signaling and/or growth.
(269) TABLE-US-00007 TABLE 7 Genes up-regulated by nitrolinoleate. IL10RA; interleukin 10 receptor, 3.173 alpha GADD45G; growth arrest and DNA- 3.155 damage-inducible, gamma IRS2; insulin receptor substrate 2 3.243 HO-1, heme oxygenase-1 4.086 GADD45A; growth arrest and DNA- 2.823 damage-inducible, alpha CASP1; caspase 1, apoptosis-related 2.572 cysteine protease (interleukin 1, beta, convertase) CASP4; caspase 4, apoptosis-related 2.57 cysteine protease CCNA1; cyclin A1 2.558 JUN; v-jun sarcoma virus 17 2.454 oncogene homolog (avian) CASP3; caspase 3, apoptosis-related 1.689 cysteine protease GADD45B; growth arrest and DNA- 1.674 damage-inducible, beta AATK; apoptosis-associated tyrosine 1.503 kinase AMID; apoptosis-inducing factor 8.362 (AIF)-homologous mitochondrion- associated inducer of death
Example 6
(270) The present invention also provides the activation of p-JNK and p-c-Jun protein kinases by nitrated lipids, by stimulating the phosphorylation of these kinases. The activation of these cell signaling mediators allow modulation of cell signaling, growth, differentiation, metabolism, inflammatory responses, migration and apoptosis.
Example 7
(271) Synthesis and characterization of nitro/hydroxy fatty acids. The Michael addition reaction of water to nitroalkenes results in formation of nitro-hydroxy derivative (18:1, 18:2 and 18:3 nitro-hydroxy species shown in
Example 8
(272) Addition of glutathione to nitraed fatty acids. In a neutral buffered solution, the thiol and nitrated FA (e.g., nitrated oleate or linoleate) can be combined from equimolar to 10:1 ratios of nitroalkene to thiol. Mass spectrometry shows nitrolinoleate forms a covalent Michael addition reaction product with the tripeptide glutathione (m/z 631.3, LNO2-GSH) (
(273) Throughout this application, various publications are referenced. The disclosures of these publications in their entireties are hereby incorporated by reference into this application in order to more fully describe the compounds, compositions and methods described herein.
(274) Various modifications and variations can be made to the compounds, compositions and methods described herein. Other aspects of the compounds, compositions and methods described herein will be apparent from consideration of the specification and practice of the compounds, compositions and methods disclosed herein. It is intended that the specification and examples be considered as exemplary.