Electrophoresis systems, devices, and associated methods of analysis
09855684 ยท 2018-01-02
Assignee
Inventors
Cpc classification
C08J5/122
CHEMISTRY; METALLURGY
B29C33/3857
PERFORMING OPERATIONS; TRANSPORTING
B29C33/42
PERFORMING OPERATIONS; TRANSPORTING
C09J9/00
CHEMISTRY; METALLURGY
Y10T156/1039
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
International classification
B29C33/42
PERFORMING OPERATIONS; TRANSPORTING
C08J5/12
CHEMISTRY; METALLURGY
C09J9/00
CHEMISTRY; METALLURGY
B29C33/38
PERFORMING OPERATIONS; TRANSPORTING
Abstract
Embodiments of electrophoresis systems, devices, and associated methods of analysis are described herein. In one embodiment, an electrophoresis device includes a first electrode having a first polarity, a second electrode having a second polarity, and a substrate. The substrate includes a first channel having a first section with a first cross-sectional area and a second section with a second cross-sectional area. The first end is electrically coupled to the first electrode, and the second end is electrically coupled to the second electrode. The first cross-sectional area is greater than the second cross-sectional area in a first dimension and in a second dimension generally orthogonal to the first dimension.
Claims
1. An electrophoresis device, comprising: a first electrode having a first polarity; a second electrode having a second polarity opposite the first polarity; a substrate including a channel configured to contain a sample, the channel having a first section and a second section between a first end and a second end, the first end being electrically coupled to the first electrode and the second end being electrically coupled to the second electrode, wherein: the first section has a first cross-sectional area at a first edge; the second section has a second cross-sectional area at a second edge abutting the first edge of the first section; the first cross-sectional area is greater than the second cross-sectional area in at least one of a first dimension or in a second dimension orthogonal to the first dimension; the first and second electrodes are configured to apply an electric voltage on the sample in the channel, thereby forcing components of the sample to migrate from the first end of the channel toward the second end; and the second section of the channel is configured to separate and concentrate the components in the sample under the influence of the applied electric voltage, wherein: the second edge is a second inlet edge opposite a second outlet edge of the second section; the channel further includes a third section with a third cross-sectional area at a third edge abutting the second outlet edge of the second section; the second cross-sectional area is greater than the third cross-sectional area; a first reduction from the first cross-sectional area to the second cross-sectional area is in the first dimension and second dimension; a second reduction from the second cross-sectional area to the third cross-sectional area is also in the first dimension and the second dimension.
2. The electrophoresis device of claim 1 wherein the first reduction in the first dimension and the second reduction in the second dimension are concomitant with each other.
3. The electrophoresis device of claim 1 wherein: the first reduction and the second reduction are both about 10:1.
4. The electrophoresis device of claim 1 wherein: the first reduction and the second reduction are both about 10:1; the channel is a first channel; and the electrophoresis device further includes: a second channel in fluid communication with the first section of the first channel; a first reservoir proximate the first end, the first reservoir being configured to store a trailing electrolyte; a second reservoir proximate the second end, the second reservoir being configured to store a leading electrolyte; and a sample reservoir in fluid communication with the second channel, the sample reservoir being configured to store a sample having components with an electrophoretic mobility higher than that of the trailing electrolyte and lower than that of the leading electrolyte.
5. The electrophoresis device of claim 1 wherein at least the second section of the channel is a microchannel.
6. An electrophoresis device, comprising: a first electrode having a first polarity; a second electrode having a second polarity opposite the first polarity; and a substrate having a channel configured to carry one or more fluids therein, the channel having a first end and a second end spaced apart from the first end, wherein the first and second ends of the channel are electrically coupled to the first and second electrodes, respectively, and wherein: the channel includes a constriction separating a first section and a second section between the first and second ends, the first section having a first cross-sectional area at a first edge and the second section having a second cross-sectional area at a second edge abutting the first edge of the first section at the constriction, the second cross-sectional area being smaller than the first cross-sectional area; the first and second electrodes are configured to apply an electric voltage on the one or more fluids in the channel, thereby forcing components of the one or more fluids to migrate from the first end of the channel toward the second end; and the first and second sections of the channel are configured to separate and concentrate components in the one or more fluids under the influence of the applied electric voltage, wherein: the channel extends between the first and second ends along a first direction; and the constriction includes a reduction in cross-sectional area from the first cross-sectional area of the first section to the second cross-sectional area of the second section along a second direction and a third direction both perpendicular to the first direction.
7. The electrophoresis device of claim 6 wherein: the constriction is a first constriction; the channel further includes a second constriction; the channel extends between the first and second ends along a first direction; and the first constriction includes: a first reduction in cross-sectional area along a second direction perpendicular to the first direction; and the second constriction includes a second reduction in cross-sectional area along a third direction perpendicular to the first direction, the first and second reductions being spaced apart from each other along the first direction.
8. The electrophoresis device of claim 6 wherein: the constriction is a first constriction; the channel further includes a second constriction; the first constriction includes a first reduction in cross-sectional area between the first and second ends; and the second constriction includes a second reduction in cross-sectional area between the first and second ends, the first and second reductions being spaced apart from each other along a flow direction of the channel.
9. The electrophoresis device of claim 6 wherein: the constriction is a first constriction; the channel further includes a second constriction; the first constriction includes a first reduction in cross-sectional area between the first and second ends along a direction; and the second constriction includes a second reduction in cross-sectional area between the first and second ends along another direction perpendicular to the direction, the first and second reductions being spaced apart from each other.
10. The electrophoresis device of claim 6 wherein the constriction includes: a first reduction in cross-sectional area between the first and second ends along a direction; and a second reduction in cross-sectional area between the first and second ends along another direction perpendicular to the direction, the first and second reductions being concomitant with each other.
11. The electrophoresis device of claim 6 wherein: the constriction is a first constriction; the channel further includes a second constriction; the first constriction includes a first reduction in cross-sectional area between the first and second ends along multiple directions; and the second constriction includes a second reduction in cross-sectional area between the first and second ends along the multiple directions, the first and second reductions being spaced apart from each other along a flow direction of the channel.
12. An electrophoresis device, comprising: a first electrode having a first polarity; a second electrode having a second polarity opposite the first polarity; and a substrate having a channel configured to carry one or more fluids therein, the channel having a first end and a second end spaced apart from the first end, wherein the first and second ends of the channel are electrically coupled to the first and second electrodes, respectively, and wherein: the channel includes a constriction separating a first section and a second section between the first and second ends, the first section having a first cross-sectional area at a first edge and the second section having a second cross-sectional area at a second edge abutting the first edge of the first section at the constriction, the second cross-sectional area being smaller than the first cross-sectional area; the first and second electrodes are configured to apply an electric voltage on the one or more fluids in the channel, thereby forcing components of the one or more fluids to migrate from the first end of the channel toward the second end; and the first and second sections of the channel are configured to separate and concentrate components in the one or more fluids under the influence of the applied electric voltage, wherein: the constriction is a first constriction; the channel further includes a second constriction; the first constriction includes a first reduction in cross-sectional area between the first and second ends along multiple directions; and the second constriction includes a second reduction in cross-sectional area between the first and second ends along the multiple directions, the first and second reductions being spaced apart from each other along a flow direction of the channel.
13. The electrophoresis device of claim 12 wherein: the channel extends between the first and second ends along a first direction; and the first constriction includes: a first reduction in cross-sectional area along a second direction perpendicular to the first direction; and the second constriction includes a second reduction in cross-sectional area along a third direction perpendicular to the first direction, the first and second reductions being spaced apart from each other along the first direction.
14. The electrophoresis device of claim 12 wherein the first constriction and the second constriction are concomitant with each other.
15. The electrophoresis device of claim 12 wherein: the first reduction and the second reduction are both about 10:1.
16. The electrophoresis device of claim 12 wherein: the first reduction and the second reduction are both about 10:1; the channel is a first channel; and the electrophoresis device further includes: a second channel in fluid communication with the first section of the first channel; a first reservoir proximate the first end, the first reservoir being configured to store a trailing electrolyte; a second reservoir proximate the second end, the second reservoir being configured to store a leading electrolyte; and a sample reservoir in fluid communication with the second channel, the sample reservoir being configured to store a sample having components with an electrophoretic mobility higher than that of the trailing electrolyte and lower than that of the leading electrolyte.
17. The electrophoresis device of claim 12 wherein at least the second section of the channel is a microchannel.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION
(13) Various embodiments of electrophoresis systems, devices, and associated methods of analysis are described below. As used herein, the term electrophoresis or cataphoresis generally refers to separating electrically charged particles in a sample based on mobility of the particles relative to a fluid under the influence of an electric field. Without being bound by theory, it is believed that different charged particles can migrate at different speeds (commonly referred to as electrophoretic mobility) relative to a fluid in an electric field. The charged particles may have different charge polarity, charge state, particle size, and/or other characteristics. As a result, the charged particles separate from one another during migration in the fluid (e.g., a solvent or buffer solution). The separated charged particles may then be collected and further analyzed for identification and/or abundance. The term microchannel generally refers to a channel with a hydraulic diameter below about 1 millimeter.
(14) Also used herein, the term isotachophoresis (ITP) generally refers to an electrophoresis technique in which a sample is introduced between a leading electrolyte (LE) and a terminating electrolyte (TE) before an electrical field is applied. The LE has an electrophoretic mobility greater than any charge particles of interest in the sample. The TE has an electrophoretic mobility lower than any charge particles of interest in the sample. After an electric field is applied, charge particles in the sample separate from one other while the sample is moving along with and between the LE and TE in a channel. After reaching corresponding equilibrium concentrations (i.e., in peak mode), the separated charged particles form distinct volumes or stacks in the channel with sharp boundaries between adjacent stacks.
(15) As discussed above in the Background section, detecting low concentration components of a sample can be challenging. The inventor has recognized that by applying ITP in a microchannel with cross-sectional area reductions, low concentration components (e.g., phosphorylated and un-phosphorylated cTnI) can be separated and substantially concentrated (e.g., by a factor of about 10,000). As a result, embodiments of the present technology can lower detection limits, increase analysis sensitivity, and decrease analysis costs when compared to conventional analysis techniques. Certain embodiments of analysis systems, devices, and methods of analysis in accordance with the present technology are discussed below. However, a person skilled in the relevant art will understand that the technology may have additional embodiments, and that the technology may be practiced without several of the details of the embodiments described below with reference to
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(17) As shown in
(18) In the illustrated embodiment, the substrate 102 includes a plate or chip constructed from poly(methyl methacrylate) (PMMA). In other embodiments, the substrate 102 can be constructed with glass, silicon, metals, ceramics, and/or other suitable substrate materials. In certain embodiments, the reservoirs can individually include an aperture, indentation, and/or other suitable space in the substrate 102 and/or cover. In other embodiments, the reservoirs can individually include a container and/or other suitable fluid holder external to the substrate 102.
(19) As shown in
(20) The first channel 106 can include one or more constrictions along the x-dimension. As used herein, the term constriction generally refers to a reduction in cross-sectional area along a flow direction. For example, as shown in
(21) The cross-sectional area reduction across the first and/or second constrictions 109a and 109b can be by a factor of 2, 3, 4, 5, 10, 100, and/or other suitable values. In certain embodiments, the first and second constrictions 109a and 109b can have the same reduction factor (e.g., 10). In other embodiments, the first and second constrictions 109a and 109b can have different reduction factors. Even though particular configuration of first and second constrictions 109a and 109b is shown in
(22) Referring back to
(23) The first and second electrodes 126 and 128 can include platinum, gold, and/or other suitable types of electrodes. In the illustrated embodiment, the first and second electrodes 126 and 128 are placed in the TE reservoir 122 and the LE reservoir 124, respectively. In other embodiments, the first and second electrodes 126 and 128 can be spaced apart from but electrically coupled to the TE reservoir 122 and the LE reservoir 124, respectively. In further embodiments, the first and second electrodes 126 and 128 can have other suitable configurations.
(24) The analysis system 100 can also include a controller 118 operatively coupled to components of the analysis system 100 for controlling operation of the analysis system 100. The controller 118 can include a processor 120 coupled to a memory 122 and an input/output component 124. The processor 120 can include a microprocessor, a field-programmable gate array, and/or other suitable logic devices. The memory 122 can include volatile and/or nonvolatile computer readable media (e.g., ROM; RAM, magnetic disk storage media; optical storage media; flash memory devices, EEPROM, and/or other suitable non-transitory storage media) configured to store data received from, as well as instructions for, the processor 120. The input/output component 124 can include a display, a touch screen, a keyboard, a track ball, a gauge or dial, and/or other suitable types of input/output devices configured to accept input from and/or provide output to an operator.
(25) In certain embodiments, the controller 118 can include a computer operatively coupled to the other components of the analysis system 100 via a hardwire communication link (e.g., a USB link, an Ethernet link, an RS232 link, etc.). In other embodiments, the controller 118 can include a logic processor operatively coupled to the other components of the analysis system 100 via a wireless connection (e.g., a WIFI link, a Bluetooth link, etc.). In further embodiments, the controller 118 can include an application specific integrated circuit, a system-on-chip circuit, a programmable logic controller, and/or other suitable computing frameworks.
(26) In operation, the controller 118 can cause the LE injection device 132 to inject an LE carried by a fluid (e.g., a buffer solution) into the LE reservoir 114 and the first channel 106 until the injected fluid substantially fills the first and second channels 106 and 108. Subsequently, the controller 118 can cause the sample injection device 130 to inject a sample (e.g., a blood sample) into the sample reservoir 110. The injected sample can then substantially fill the first section 106a of the first channel 106 and the TE reservoir 112 by displacing a portion of the LE. Then, the controller 118 can cause the TE injection device 134 to inject a TE into the TE reservoir 112.
(27) The controller 118 can then issue instructions to the power supply 116 to supply a voltage to the first and second electrodes 126 and 128. Under the influence of the applied voltage, the LE, sample, and TE migrate along the x-dimension in the first channel 106. As a result, components of the sample are separated by ITP to form distinctive stacks based on electrophoretic mobility of individual components.
(28) As shown in
(29)
where c.sub.i is the concentration of a sample component i, M.sub.i is a total mass or molar load of component i, w.sub.i is a peak width of species i, and A is a cross-sectional area of the first channel 106. As shown in Equation 1, the concentration of a sample component c.sub.i is inversely proportional to the cross-sectional area A of the first channel 106. As a result, a reduction in the cross-sectional area A of the first channel 106 can result in an increase in the concentration of the sample component c.sub.i.
(30) However, one difficulty of significantly reducing the cross-sectional area of a channel is structural stability. For example, the inventor has discovered that if the cross-sectional area of the first channel 106 is reduced only in one dimension, the walls in the first channel 106 would cave in before a significant reduction (e.g., by a factor of 20) can be achieved in a PMMA substrate 102. To overcome the foregoing difficulty, the inventor recognized that by reducing the cross-sectional area of the first channel 106 in two dimensions, significant reductions may be achieved without compromising the structural stability of the passage 104. For example, the first constriction 109a can have a reduction factor of 5, and the second constriction 109b can have a reduction factor of 10. Thus, the first and second constrictions 109a and 109b can have a combined cross-sectional area reduction factor of 50. As a result, forcing the sample to flow through both the first and second constrictions 109a and 109b can result in a concentration increase by a factor of 50.
(31) The separated and concentrated sample components (e.g., phosphorylated and unphosphorylated cTnI) can then be collected by the analyzer 138 via the output conduit 136. The analyzer 138 may then determine at least one of an identity and concentration of the sample components. Original concentrations of the sample components may then be calculated based on Equation 1. Even though the operation of the analysis system 100 is described above from the perspective of the controller 118, in other embodiments, the analysis system 100 may be operated by an operator with or without utilizing the controller 118 and/or other components of the analysis system 100.
(32) The electrophoresis device 101 shown in
(33) Even though the first channel 106 in
(34) In other embodiments, the electrophoresis device 101 can also include a plurality of constrictions individually having two-dimensional reduction in cross-sectional area. For example,
(35) Certain experiments were conducted to test the efficacy of ITP analysis in a microchannel with reduction in cross-sectional area. In the experiments, an electrophoresis device generally similar to that shown in
(36) Chemicals Used in Experiments
(37) R-phycoerythrin (PE, MW=240,000 Da) was purchased from Molecular Probes of Eugene, Oreg. Potassium acetate, polyvinylpyrrolidone K-90 (PVP, MW=360,000 Da), urea, terrific broth (TB), carbenicillin, Triton X-100, sodium azide (NaN.sub.3), phenylmethylsulphonylfluoride (PMSF), benzamidine, ammonium sulfate ((NH.sub.4).sub.2SO.sub.4), citric acid, dithiothreitol (DTT), ethylenediaminetetraacetic acid, -mercaptoethanol sodium chloride (NaCl), potassium chloride (KCl), potassium phosphate (KH.sub.2PO.sub.4), and disodium phosphate (Na.sub.2HPO.sub.4) were purchased from Sigma-Aldrich of St. Louis, Mo. Pacific Blue C5-maleimide was purchased from Molecular Probes of Carlsbad, Calif.
(38) Human cTnI (HcTnI) encoding gene was subcloned into expression vector pET3d. The resultant plasmid pET3d-hcTnI was transformed into OneShot BL21 Star (DE3) Chemically Competent E. coli cells. The cells were grown on Luria Broth (LB) medium agar plates supplemented with 50 g/mL of carbenicillin at 37 C. overnight. Several colonies were picked up and inoculated into 15 mL LB-carbenicillin liquid medium and shaken at 37 C. until OD.sub.600 is up to 0.81. The pre-culture was inoculated into 2 L TB medium with 50 g/mL carbenicillin. After shaking at 37 C. for 18 hours, the cells were spun down at 7,000g for 10 min.
(39) Preparation of cTnI
(40) Cell pellets were suspended in a carboxy methyl (CM) buffer (6 M urea, 30 mM citric acid, 1 mM EDTA, and 1 mM DTT) with 0.01% Triton X-100, 0.01% NaN.sub.3, 2 mM PMSF and 2 mM benzamidine and sonicated with a Misonix Sonicator 3000 Ultrasonic Liquid Processor provided by Misonix Inc., Farmingdale, N.Y., on ice. The crude lysate was clarified by centrifugation at 40,000 G for 30 min. The supernatant was brought to 30% and 60% saturation with (NH.sub.4).sub.2SO.sub.4 sequentially, followed by stirring at 4 C. for 1 hour, and spun down at 28,000 G for 20 min. The supernatant was decanted and the pellet was re-suspended in 50 mL CM buffer. The solution was dialyzed against 1 L CM buffer overnight at 4 C. to remove residual (NH.sub.4).sub.2SO.sub.4. Next, the dialyzed and clarified supernatant was loaded onto an equilibrated CM sepharose (GE) column and an KTA FPLC System (GE) was used to run gradient elution of NaCl concentration increasing from 0 to 0.3 M. The potential cTnI peak fractions were collected and SDS-PAGE was performed to evaluate the purity of the cTnI fractions.
(41) Labeling of cTnI
(42) Phosphate buffer saline (PBS) was prepared using NaCl, KCl, Na.sub.2HPO.sub.4, and KH.sub.2PO.sub.4 to pH 7.4, and 1.5 mL of purified cTnI was dialyzed three times in 1 L solutions of PBS 7.4 with 4 M urea for at least 8 hours at 4 C. in a 10,000 MWCO Slide-A-Lyzer Dialysis Cassette provided by Piercenet of Rockford, Ill. After dialysis, the cTnI was labeled with Pacific Blue C5-maleimide according to the manufacturer's instructions. Pacific Blue C5-maleimide is a UV fluorescent, thiol-reactive probe that readily reacts with the two cysteine groups on the cTnI molecule. A 10 molar excess of dye was mixed with the cTnI and allowed to react at 4 C. overnight. An excess of -mercaptoethanol was added to quench the reaction. The labeled cTnI was again dialyzed as mentioned previously to remove excess dye. A Beckman Coulter DU 730 UV/Vis spectrophotometer provided by Beckman Coulter, Inc., of Brea, Calif., was used to determine the final protein concentration and the degree of labeling. The final protein concentration of cTnI was 0.46 mg/mL and the degree of labeling was about 2. The cTnI isoelectric point was checked by running isoelectric focusing PAGE (IEF-PAGE).
(43) Electrolyte Solutions
(44) An LE solution was prepared by adjusting pH of 20 mM potassium acetate solution to pH 4.5 with 10% (v/v) acetic acid. A TE solution includes 10 mM acetic acid at pH 3.8. PVP at 1% (w/v) was added to both LE and TE in order to suppress electro-osmotic flow. PE and labeled cTnI stock solutions were diluted in LE solution to concentrations of 4.0 g/mL and 2.3 g/mL, respectively. All electrolyte solutions were made up using nano-pure water. Electrolyte solutions were degassed with a vacuum pump.
(45) Experimental Setup
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(47) During testing, the electrophoresis device 201 was initially filled with the LE from the cathode reservoir 114 to the anode reservoir 112 using a 3 mL disposable syringe. Next, diluted PE and labeled cTnI in LE were introduced into the sample reservoir 110 and filled towards the anode reservoir 112 so that LE occupying the region between the sample reservoir 110 and anode reservoir 112 was washed out of the anode reservoir 112. At this point, the sample solution occupied the region between the sample reservoir 110 and the anode reservoir 112. The total mass load (M.sub.i) of both PE and cTnI injected into the passage may be calculated by multiplying the initial concentration by the volume of the sample loading zone (1.1 L). Next, the anode reservoir 112 was rinsed several times with TE and then filled with TE.
(48) The filled electrophoresis device 201 was placed underneath a 5 objective lens of a Leica DM 2000 fluorescence microscope equipped with a DFC310 digital color camera provided by Leica Microsystems Inc., Bannockburn, Ill. The camera was controlled with the provided Leica Application Suite (LAS) V3.6 software to collect images of fluorescent proteins as the proteins migrated through the first channel 106 via ITP. The exposure time was set to 67.7 millisecond and the gain was set to 4.1. The fluorescent proteins were excited with a Leica Microsystems EL 6000 light source using an A type filter cube. Platinum electrodes were submerged in the anode reservoir 112 and cathode reservoir 114 while the sample reservoir 110 was left to float.
(49) Initially, the anode reservoir 112 was grounded and the cathode reservoir 114 was set to 400 V. After the proteins migrate from the first section 106a into the second section 106b, the voltage on the cathode reservoir 114 was reduced to 100 V. Representative images at the end of each experiment were collected. Electropherogram of the images were obtained for further analysis.
(50) Results and Discussion
(51) Potassium ion was chosen as the LE ion. Hydronium ion was chosen as the TE ion. The initial mass load (M.sub.i) was calculated from the following equation
M.sub.i=c.sub.i.sup.0.Math.L.Math.AEquation 2
where c.sub.i.sup.0 is the initial concentration of protein i (4.0 g/mL for PE and cTnI, respectively), L is the length of sample loading zone (11 mm), and A is the cross-sectional area of the first channel 106 (0.1 mm.sup.2). Thus, the total mass for PE and cTnI was 4.40 and 2.53 ng, respectively.
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(53) After several runs, electropherograms were obtained by plotting distance (mm) relative to the field of view of the camera versus average intensity over the entire width of the first channel 106 for each protein.
(54) TABLE-US-00001 PE cTnI Peak width Concentration Concentration Peak width Concentration Concentration Trial # (m) (mg mL.sup.1) Factor (m) (mg mL.sup.1) Factor 1 30.21 72.84 18,210 50.83 24.89 10,822 2 35.58 62.18 15,545 51.21 24.70 10,739 3 29.45 74.70 18,675 46.93 26.96 11,722 Average 31.68 69.91 17,477 49.66 25.52 11,094 St. Dev. 3.23 6.76 1,689 2.37 1.25 545
As clearly shown in the table above, an average concentration factor of 17,477 was achieved in three trials.
(55) From the foregoing, it will be appreciated that specific embodiments of the disclosure have been described herein for purposes of illustration, but that various modifications may be made without deviating from the disclosure. In addition, many of the elements of one embodiment may be combined with other embodiments in addition to or in lieu of the elements of the other embodiments. Accordingly, the technology is not limited except as by the appended claims.