Fluidics apparatus and fluidics substrate
09751057 ยท 2017-09-05
Assignee
Inventors
Cpc classification
B01L2400/0439
PERFORMING OPERATIONS; TRANSPORTING
B01J19/0093
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502792
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/10
PERFORMING OPERATIONS; TRANSPORTING
B01J2219/00783
PERFORMING OPERATIONS; TRANSPORTING
Y10T436/25125
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
B01F31/86
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/089
PERFORMING OPERATIONS; TRANSPORTING
B01F2101/44
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/0864
PERFORMING OPERATIONS; TRANSPORTING
B01L2400/0496
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/0867
PERFORMING OPERATIONS; TRANSPORTING
B01J2219/00932
PERFORMING OPERATIONS; TRANSPORTING
B01F33/3021
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/0816
PERFORMING OPERATIONS; TRANSPORTING
B01L2400/0436
PERFORMING OPERATIONS; TRANSPORTING
B01J2219/00837
PERFORMING OPERATIONS; TRANSPORTING
C12N13/00
CHEMISTRY; METALLURGY
B01J2219/0086
PERFORMING OPERATIONS; TRANSPORTING
International classification
B01J19/00
PERFORMING OPERATIONS; TRANSPORTING
B01L3/00
PERFORMING OPERATIONS; TRANSPORTING
Abstract
A method of using a fluidics apparatus for lysing a cell. In the method, the cell is placed in a fluid sample contacting a substrate surface. The method further includes providing surface acoustic waves (SAWs) at the substrate surface, causing cell lyses.
Claims
1. A method for lysing a cell, comprising: suspending the cell in a fluid sample, the fluid sample having a volume of equal to or less than 5 milliliter; contacting the fluid sample with a substrate surface; and providing a transducer arrangement, the transducer arrangement being operated to provide surface acoustic waves at the substrate surface at a frequency in the range of 10 kHz to 1 GHz for a time of at least 0.1 seconds, causing cell lyses.
2. The method according to claim 1, wherein the surface acoustic waves provided at the substrate surface cause rotational streaming in the fluid sample.
3. The method according to claim 2, wherein said rotational streaming is induced in the fluid sample by providing the surface acoustic waves at the substrate surface asymmetrically with respect to the fluid sample.
4. The method according to claim 1, wherein a power of the surface acoustic waves is progressively increased such that it becomes sufficiently high to lyse the cell.
5. The method according to claim 1, wherein the substrate is separable from the transducer arrangement and coupled to the transducer arrangement by a coupling medium.
6. The method according to claim 1, wherein said transducer arrangement provides an emission train of said surface acoustic waves at the substrate surface, and wherein the fluid sample is located at a fluid sample area which only partly overlaps with the emission train of said surface acoustic waves.
7. The method according claim 1, wherein said transducer arrangement is tunable to provide a laterally movable emission train of said surface acoustic waves at the substrate surface, and wherein a lateral position of said emission train of surface acoustic waves is tuned to a position on the substrate surface to induce rotational streaming in the fluid sample.
8. The method according to claim 1, wherein the substrate surface comprises an arrangement of scattering elements arranged to scatter the surface acoustic waves into a configuration for inducing rotational streaming in the fluid sample.
9. The method according to claim 1, wherein the fluid sample is a droplet.
10. The method according to claim 1, wherein the cell is an animal cell.
11. The method according to claim 1, further comprising: providing a substrate having said substrate surface with a sample manipulation zone; placing said fluid sample in the sample manipulation zone; providing a transducer arrangement comprising a layer of piezoelectric material and at least one array of electrodes to project surface acoustic waves to the substrate surface, wherein the substrate surface has a two dimensional periodic arrangement of surface acoustic wave scattering elements affecting the transmission, distribution or behaviour of surface acoustic waves at the substrate surface, and wherein the substrate is separable from the transducer arrangement and the substrate is in the form of a sheet having a first major surface and a second major surface, formed substantially parallel with each other, the first major surface providing the sample manipulation zone and the arrangement of surface acoustic wave scattering elements, the second major surface providing a coupling surface, for coupling with the transducer arrangement in operation; projecting surface acoustic waves from the transducer arrangement to the substrate surface such that the cell lyses; and separating the substrate from the transducer arrangement.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1)
(2)
(3)
(4)
(5)
(6)
(7)
(8)
(9)
(10)
(11)
(12)
(13)
(14)
(15)
(16)
(17)
(18)
(19)
(20)
(21)
(22)
(23)
(24)
(25)
DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS, FURTHER OPTIONAL FEATURES
(26) Preferred embodiments of the present invention will now be described by way of example.
(27) It is known that microfluidic technologies can enable the precise control of the delivery of reagents, drugs and metabolites to single cells or to groups of cells. Such methods for can be used for new medicines discovery, or to deliver reagents and samples in diagnostic technologies.
(28) Despite such rapid advances in microfluidic, or so-called Lab-on-a-Chip technologies over the last decade, there have, however, been few new methods that have been developed to generate fluid flow within micro-scale channels. Most existing methods to create such flow rely on generating a pressure difference to drive the flow (in particular by the use of various forms of mechanical pumps). These methods all rely upon external interconnects from the chip to the pump, often making the process of connection one of the most challenging.
(29) Other alternative methods currently in use involve the use of a phenomenon known as electrokinetic pumping (including electro-osmosis or dielectrophoresis) to drive the fluid under electrical control. In all cases, however, these techniques require the implementation of metallic planar transducers within the microchannels. Whilst these electrical connections to the chip result in fluid flow, the whole chip, including the transducers, is disposed of at the end of each assay. Thus, neither pressure driven mechanical pumping, nor electrokinetics, afford the user with the ability to interrogate and move the fluid in a non-contact manner, at low cost.
(30) The present inventors have developed new techniques for droplet manipulation in the microfluidic regime. These techniques are based upon the use of surface acoustic waves (SAWs) generated on a piezoelectric device, such as a device based on lithium niobate, LiNbO.sub.3.
(31) A Raleigh wave is a coupled compressional-shear system where the longitudinal and the transverse motion are out of phase by 90. The present inventors have demonstrated that it is possible to propagate such longitudinal Raleigh waves (an example of SAWs) from the piezoelectric device, through a coupling medium (which can, for example be water or an oil) into a thin disposable microfluidic chip substrate formed of plastic, glass or other suitable material. Surprisingly, the waves carry sufficient energy to subsequently drive the fluids on the disposable substrate. Although the LiNbO.sub.3 piezoelectric device is, itself, relatively expensive, in this format it is a re-usable platform, and it is only the substrate that is disposed of after a (typically single) use. The only physical contact for actuation of the droplet is through the medium between the LiNbO.sub.3 and the disposable chip.
(32) When Raleigh waves are propagated from a piezoelectric device to a substrate (e.g. a thin chip) coupled to the surface of the piezoelectric device, the resultant acoustic waves in the substrate may be described as Lamb waves. Raleigh waves and Lamb waves are types of surface acoustic waves. The term surface acoustic wave (SAW) is used herein to describe both Raleigh waves and Lamb waves unless indicated otherwise.
(33) The functionality of the platform can, however, also be readily extended beyond simple pumping of fluids or droplets. For example, by microfabricating multiple SAW transducers on the piezoelectric device, and through the subsequent differential actuation of these transducers, it is possible to manipulate droplets in a variety of different directions (linear, orthogonal or at any angle between). If necessary, by combining different relative components of wave generation from orthogonal actuators, it is possible to enable splitting and recombination of droplets.
(34) Surface acoustic waves are longitudinal in nature, such that a component of the energy is dissipated in the z-plane (containing the coupling medium). This is in contrast with shear waves parallel to the plane of propagation, where no significant energy would be dissipated normal to the surface. As this longitudinal wave propagates within the coupling medium, it is subject to reflections off the lower (basal) plane of the disposable microfluidic substrate. Thus, by micromachining well defined structures within this plane (using established surface microengineering techniques including photolithography, pattern-transfer, mask definition and etching), it is possible to engineer complex energy distributions in the disposable substrate. Indeed, by focussing the energies of the acoustic waves within the chip, it is possible to lyse cells on-chip, or to atomise samples such that they can be transported off-chip. One particular application is the creation of plumes of atomised samples, which can be captured in ion-funnels to provide an innovative interface between low volume (e.g. single cell) biology and mass spectrometry. Other examples of the applications of the device involve the selective concentration of particles with respect to their size or mass (i.e. their fractionation). This can underpin diagnostic applications in separating vesicles, cells and micro-organisms.
(35)
(36)
(37)
(38) In order to manufacture the substrates shown in
(39) The photoresist pattern was used as a dry etched mask where the holes were etched to a depth of approximately 230 m. This depth equated to half the thickness of the Si wafer. The wafer was then cleaned in acetone and then cleaved to provide individual test structures. The test structures were cleaned again given an oxygen plasma treatment and then immersed in a solution of heptane and a tri-chloro-tri-deca-fluoro-octylsilane in order to give a hydrophobic surface to the silicon test structures, contact angle >65.
(40) The surface acoustic wave source consisted of a 3 inch (6.75 cm) LiNbO.sub.3 with an interdigitated electrode structure. This is referred to as an interdigitated transducer (IDT). The IDT was resonant at a frequency of 6.18 MHz and SAWs at this frequency were used for the tests. A programmable signal generator was used to provide an input of 6.18 MHz with amplitude of 10 dBm (1 W) pulsed at 50 Hz to an amplifier with 40 dB gain to present approximately 10 dBm (1 W) to the IDT.
(41) De-ionised water was used as a coupling agent between the silicon test substrates and the lithium niobate wafer; approximately 10 L was used for this purpose. In order to test mobility and atomisation, the droplet size was about 2 L.
(42) During testing, each of the structures shown in
(43) The waveguide structure (
(44) The combination structure (
(45) Atomisation of water droplets could be achieved on all structures. This is discussed in more detail below.
(46)
(47) Further details relating to the preferred embodiment of the device are set out below.
(48) A piezoelectric device was fabricated on a 128 Y-cut X-propagating 3 inch (6.75 cm) LiNbO.sub.3 wafer. Transducers were formed on the wafer, each having 20 pairs of electrode fingers to form interdigitated transducers (IDT). The electrode fingers were located with approximately 330 m pitch p, 180 m finger width f, with 15 mm aperture w (overlap), see
(49) An Agilent MXG Analog Signal Generator N5181A 250 KHz 1 GHz, in conjunction with a Mini Circuits ZHL-5 W-1, 5-500 MHz amplifier, was used to power the SAW device. The amplifier was powered by a TTi EX354D Dual Power Supply 280 W that could supply 3 A and 24V DC. Approximately 1 W of power was applied to the IDT. The driving signal for the SAW device was pulsed for 20 ms every 100 ms, to avoid excess heating. Droplets were imaged at 62 frames per second using a high speed camera (Red Lake M3), which allowed the capture of atomisation from single pulses to be visualized, when the surface acoustic waves travelled through the droplet.
(50)
(51) De-ionised water was used as a coupling agent between the silicon test structures and the lithium niobate wafer; approximately 10 L was used for this purpose, providing a coupling medium layer of less than about 20 m between wafer and test substrate. In order to illustrate atomisation, two 1 L drops were used, one at the apex of the cone, the other approximately 10 mm away from the apex.
(52) The phononic structure in the border zone consisted of a square array of holes etched into silicon, to a depth about half way through the wafer. This regular perturbation in the Young's modulus of the material provides the material with a frequency dependent acoustic transmission or reflection property.
(53)
(54) The wavelength of the SAW depends on the pitch of an IDT. However, the observed change in acoustic response of the phononic structure would indicate a change in the wavelength of the SAW and hence variation in the pitch of the intedigitated electrodes. This variation was a consequence of using acetate masks for prototyping. The masks did posses a variation in the electrode thickness but these variations were thought to be insignificant, which appears not to be the case. So in effect the inventors were using an IDT with a range of pitches allowing a number of possible wavelengths to be radiated.
(55) In an alternative embodiment, the transducer uses a slanted interdigitated electrode structure. This is then used as a tunable source of SAWs. By slanting the electrodes the inter-electrode distance changes. This arrangement can be modelled by an array of IDT's with differing inter electrode spacing. The position of the SAW depends on the excitation frequency used.
(56) The device of the present embodiment was designed for a certain operating wavelength (frequency) but typically there are always some deviations from the design parameters due to manufacturing tolerances during fabrication. As shown in
(57)
(58) In
(59) Atomisation for 0.5 L drops has been observed at 790 mW applied power.
(60)
(61)
(62)
(63) In
(64) The design, construction and investigation of the embodiment of the device shown in
(65) The surface acoustic waves were generated on the piezoelectric LiNbO.sub.3 wafer by an interdigitated transducer (IDT) and propagated as Rayleigh waves, in a non dispersive manner with a single velocity. The resonant frequency, f.sub.0, is directly related to the Rayleigh wave velocity in the material, c.sub.R, (3996 m/s) and the pitch of the interdigitated electrodes, D, as per equation (1):
(66)
(67) The Rayleigh waves were coupled into a substrate in the form of a sheet, or plate (which substrate sheet or plate may be referred to as a chip), via an intermediate thin film of water. As a free plate, the substrate supports a number of propagation modes, termed Lamb waves (named after Lamb, the first to carry out the analysis). There are two distinct classes of Lamb wave propagation modes, symmetric and antisymmetric, that can be resolved using the Rayleigh-Lamb frequency equations (2) and (3).
(68)
with d the plate thickness, and c.sub.L (8433 m/s) and c.sub.T (4563 m/s) the longitudinal and transversal velocities, respectively.
(69) These transcendental equations, with many real solutions, reveal that Lamb waves are dispersive, as the phase velocity, c.sub.phase, is a function of the frequency thickness product fd. Thus for a fixed frequency, the wavelength and the mode propagated in the substrate sheet can be controlled via its thickness.
(70)
(71) These phononic structures were then modelled as simple 2-D diffraction problems, where the acoustic waves were described using a time harmonic Helmholtz wave equation (4), in which a pressure wave, P, was launched into the structure (density ), over a range of wavelengths calculated from the Lamb wave number, k, at a particular (fd) product.
(72)
(73) The inventors developed simple phononic structures, where the lattice comprises an array of holes, and where all cases were treated with Neumann boundary conditions. Using these design criteria the inventors produced a series of square lattice 2D phononic crystals, which amplified or shaped the acoustic field, within the substrate sheet. The phononic crystal was used to create acoustic cavities, which were excited at different wavelengths, resulting either in scattering or reflection of the energy. This can focus the energy into specific regions of the chip. As a consequence, the interaction between the Lamb wave and the phononic lattice generates spatial variations of the acoustic field intensity, associated with the different propagation regimes within the chip.
(74) Importantly, energy losses that occur during the coupling of the acoustic wave from the lithium niobate wafer into the substrate sheet are mitigated against by the phononic structure, which can focus the power into specific regions of the chip.
(75) The Lamb waves propagated in the chip interact with the droplet of liquid placed on its surface in a similar fashion as Rayleigh waves in a piezoelectric material would. In the case of Rayleigh waves, the interaction with the liquid dampens the surface-propagating wave, which decays as it propagates along the surface. It is then termed a leaky Rayleigh wave and radiates a compressional wave into the liquid, which cannot support shear waves. Similarly, a droplet of liquid placed on the substrate renders the Lamb waves evanescent, with the acoustic energy being refracted into the liquid at an angle termed the Ralyeigh angle .sub.R, determined by Snell's law (equation 5):
(76)
(77) Depending on the power applied, different fluidic regimes can be induced in the droplet, from (acoustic) streaming where volumetric flow is created throughout the drop by recirculation, to the destabilisation of the contact line resulting in droplet movement, as well as nebulisation and jetting by disrupting the drop's free surface into smaller droplets. Examples of the spatial control of the acoustic energy upon the different regimes on the phononic substrate sheets are described in more detail below.
(78) The SAW device was fabricated on a 128 Y-cut X-propagating 3 inch LiNbO.sub.3 wafer, each device consisted of 20 pairs of electrodes to form an inter-digitated transducer (IDT) with pitch of 160 m, 80 m width, and a 10 mm aperture. The SAW IDTs were patterned using a lift off process where, after pattern transfer into an S1818 resist, a 20 nm titanium adhesion layer was evaporated prior to deposition of 100 nm of gold. Lift-off was then performed in acetone, in order to realise the pattern.
(79) An Agilent Technologies MXG Analog Signal Generator N5181A was used in conjunction with a Mini Circuits ZHL-5 W-1, 5-500 MHz amplifier and a 3 A, 24V DC power supply to power the SAW device. For nebulisation experiments, the driving signal for the SAW device was pulsed for 20 ms every 100 ms, to avoid heating. Droplets were imaged at 62 fps using a Red Lake M3 high-speed camera mounted on a Leica upright microscope, which allowed the capture of nebulisation from the droplets to be visualized, when the surface acoustic waves travelled through the droplet. The IDT's were characterised using an Agilent Technologies E5071C ENA series network analyser.
(80) The substrate was fabricated using silicon wafer with an approximate thickness of 470 micrometer. The 4 inch Si wafer was coated in AZ4562 photoresist and patterned using standard photolithography. The pattern comprised a square array (pitch 203 micrometer) of circular holes (radius 82 micrometer) and was transferred into resist layer. The photoresist pattern was then transferred into the silicon using dry etch (STS ICP) where the holes were etched. The wafer was cleaned in acetone and cleaved to provide the substrates. The dimension of the patterned substrate was approximately 20 mm by 30 mm. In the case of the acoustic horn, the aperture for the cone was made to be 10 mm to coincide with the IDT aperture and the apex of the cone was approximately 1.22 mm wide. (In the case of the centrifugal filter, described further below, the same square array of circular holes was used and actuation of the fluid was observed with 10 micrometer polystyrene beads (Duke Scientific G1000)). A 5 microliter volume of de-ionised water was placed between the substrate and the transducer surface to provide a coupling layer approximately 50 micrometer thick to promote SAW coupling.
(81) A schematic of the device is shown in
(82)
(83) The phononic substrate was designed in the form of a phononic cone in order to focus the acoustic energy, as a series of steps (or cavities), with each feature being resonant at a particular frequency, and acting as a Fabry Perot cavity [Qiu C, Liu Z, Mei J, Shi J (2005) Mode-selecting acoustic filter by using resonant tunneling of two-dimensional double phononic crystals. Appl. Phys. Lett. 87:104101-104103; Wu T T, Hsu C H, Sun J H (2006) Design of a highly magnified directional acoustic source based on the resonant cavity of two-dimensional phononic crystals. Appl. Phys. Lett. 89:171912-171913].
(84) Six steps, or cavities, of the phononic cone are numbered 1 to 6 in
(85) In
(86) Acoustic waves on the surface of the substrate, within the phononic structure were observed using white light interferometry, and the wavelengths measured on both the LiNbO.sub.3 wafer and on the substrate within the phononic structure. The inventors chose an excitation frequency of the IDT, driving the SAW, in order to excite particular cavity modes within the phononic substrate (i.e. cavities 1 to 6 in
(87)
(88) The data presented in
(89) The nebulisation phenomenon has been studied further. When relatively high powers are applied, the acoustic energy overcomes the surface tension pinning the drop to the surface so that it spreads out in a liquid film (
(90) However, a major difference with using an unstructured substrate lies in the large variation in the extent of nebulisation on the phononic substrate, which is dependent upon where the droplet was placed within the cone. This precise spatial control of the acoustic field is also seen experimentally in
(91) Droplet movement and splitting was observed using the device shown in
(92) When the acoustic radiation applied or coupled in the substrate overcomes or is equal to the sliding force given by equation (6), droplet movement can be achieved.
(93)
(94) In equation (6) R is the radius of the drop, is the surface tension and .sub.a and .sub.r are the advancing and receding contact angles of the drop when no acoustic wave is applied.
(95) By placing a droplet between two cavities, one of which is resonant, the spatial variation of the acoustic energy densities (as shown in
(96) The propagation of the SAW directly on the piezoelectric wafer or an unstructured substrate coupled to the piezoelectric wafer resulted in droplet movements in the same direction as the SAW, whereas on the phononic substrate, the droplet was moved in the opposite direction to the SAW, by increasing the frequency from 12.23 MHz to 12.43 MHz (3 dBm). It was brought back to the same position by decreasing the frequency from 12.43 MHz to 12.23 MHz.
(97) The same transducer arrangement as described above, used for droplet nebulisation, splitting or movement, can be used to create an on-chip centrifuge, by using a different substrate, coupled to the transducer arrangement, as described below.
(98) The device used for centrifugation of particles within fluid droplets is shown schematically in
(99)
(100)
(101) In order to better understand the flow patterns generated by this type of phononic structure, the inventors explored the behaviour of beads within these flows.
(102) Interestingly, the inventors observed anti-clockwise streaming with the configuration shown in
(103) As a relevant example of a biological application, the concentration of blood cells from diluted blood samples was demonstrated.
(104) The inventors have demonstrated a new concept in microfluidics showing that complex microfluidic manipulations, including for example the centrifugation of blood, can be performed on a disposable phononic chip. The SAW excitation frequency was chosen to couple across the transducer-substrate interface, where droplet manipulation was achieved. The phononic structures interact with the acoustic field, providing excellent reflectivity or scattering to the incoming acoustic waves. The experiments described herein show how droplet actuation is dependent upon the geometric design and elastic contrast within the phononic crystal, as well as the frequency of the acoustic wave, and how a variety of different fluid motions on a disposable chip can be produced on-chip, including droplet movement, splitting, nebulisation and centrifugation (without the need for electrodes, channels or pumps, for example). This flexible and powerful method does not require complex interconnect technologies, nor high voltages (as is the case in many electrokinetic techniques). In the future, by combing different phononic structures, it will become possible to create a tool-box of different fluidic functions (each being modulated by the geometric structure and the frequency of the acoustic wave). Just as in electronics, where different components are combined to create a circuit, so, combinations of phononic lattices will produce complex microanalytical systems, on chip. Although the transducer arrangement (e.g. LiNbO.sub.3 piezoelectric wafer) is relatively expensive, in accordance with the present invention it may be a re-usable platform for use with a low cost disposable substrate.
(105) In conclusion of this section relating to phononic structures, the substrates made according to the preferred embodiments of the invention are very frequency and/or wavelength selective. The phononic structures do interact with the acoustic field if working in the correct operating regime providing good reflectivity to the incoming acoustic waves. It has been shown that such structures can be used to engineer the acoustic field to provide enhanced manipulation (such as atomisation) of liquid droplets from the substrate surface. Manipulation processes applied to the fluid sample can be one or more of: movement mixing (e.g. within a single fluid sample) splitting of the fluid sample combining two or more fluid samples sorting fluid samples or particles (or cells) within fluid samples atomization concentration, including centrifugation
(106) In addition, embodiments of the present invention allow sensing of fluid samples (e.g. sensing the location of one or more fluid samples) by considering attenuation of mechanical waves picked up by one or more transducers at the piezoelectric layer.
(107) As stated above, in some preferred embodiments of the present invention the transducer includes a slanted interdigitated arrangement of electrodes, known as a slanted IDT or slanted finger IDT.
(108) Slanted finger IDTs are used in data terminals as mid-band and wide-band filters. The theory of using slanted electrodes in microfluidics has been described [Wu, T. & Chang, I., 2005. Actuating and detecting of microdroplet using slanted finger interdigital transducers. Journal of Applied Physics, 98(2), 024903-7]. However, practical realization of such devices has not been demonstrated, either with droplets directly on piezoelectric or on separate (e.g. disposable) substrates. The inventors investigated the use of slanted IDTs in microfluidics, in particular the use of a slanted IDT in combination with a separable substrate (a substrate sheet, or superstrate), as described herein in accordance with certain aspects of the present invention.
(109) The SAW amplitude excited by a slanted IDT is not uniform and different profiles can be obtained by tuning the input frequency. The resonant frequency, f, is dependent upon the pitch of the fingers D, and the sound velocity on the piezoelectric wafer, c (Equation 1, above, reproduced in slightly different form as Equation 1* below). Consequently, for a given input frequency, the SAW output is only generated when the gap (D/2) between the IDT satisfies the ability of the electrodes to support the resonance,
(110)
(111) The inventors fabricated divergent IDT electrodes where both the electrode separation (D/2) and their width (D/2) varied linearly from 62.5 micrometer to 125 micrometer along the aperture This corresponds to wavelengths of 250 micrometer to 500 micrometer and a range of frequencies from 16 MHz to 8 MHz on 128 degree Y-cut X-propagating 3 inch LiNbO3 wafer, where c=3990 m/s. Ten pairs of fingers of 15 mm in length were used. The IDTs were patterned using a lift-off process. After pattern transfer into an AZ4562 resist, a 20 nm titanium adhesion layer was evaporated prior to deposition of 100 nm of gold. Liftoff was then performed in acetone, realizing the IDT. The S-parameter was measured to characterize the IDT and showed a stable response for frequencies between 8 MHz and 14 MHz (
(112)
(113)
(114) The movable lateral position of the SAW using the slanted IDT was then used to actuate a microfluidic droplet. The inventors demonstrated that a tunable IDT can provide SAWs to a droplet to induce rotational streaming in the droplet, and thereby centrifuge particles in the droplet to concentrate them in the centre of the droplet.
(115) The concentration of 10 micrometer polystyrene beads was achieved in 10 microliter water droplets, by locating a droplet a substrate and providing SAWs to the droplet using a slanted IDT and tuning the frequency as shown in
(116)
(117) The direction of the streaming was controlled by tuning the input frequency. For example, the SAW excited with a frequency, f1, of 9.6 MHz interacted with the right side of the droplet inducing an angular momentum and created an anti-clockwise streaming. For a SAW excitation frequency of f2 of 11 MHz, the SAW interacted with the left side of the droplet inducing an angular momentum and created a clockwise flow. These two opposite directions of rotation were observed when frequencies f1 and f2 were applied to the droplet sequentially.
(118)
(119) The inventors investigated the time taken to concentrate 10 micrometer polystyrene beads in the centre of a 10 microliter droplet positioned at 9 mm from the left of the IDT directly on the lithium niobate wafer as a function of the input frequency (or the equivalent lateral position of the SAW emission train). The range of frequencies over which excitation occurs depends upon the size of the droplet. For example, using the data presented in
(120)
(121) For frequencies between 10 MHz and 10.2 MHz, although some vibrations were observed in the droplet, no streaming occurred because the SAW was symmetrically transmitted to the droplet (i.e. the SAW distribution was symmetrical with respect to the centre of the droplet) and, consequently, no angular momentum was generated in the droplet. Furthermore, the time needed to achieve a complete centrifugation of beads decreased as the centre of the SAW emission train moved closer to the centre of the drop (in this case there is an asymmetry that creates the angular momentum and hence the rotation). Indeed, as the SAW approaches the centre of the drop, the amount of fluid interacting with the acoustic wave increases, resulting in more energy being transmitted into the droplet. In this respect, the curve in
(122) Far from being limited to particle concentration, slanted IDT give the opportunity to programme multiple functions with a single electrode. The inventors demonstrated that it is possible to move, merge, mix and centrifuge a droplet on a glass substrate by tuning the frequency of the input signal.
(123) A system comprising a slanted IDT transducer arrangement coupled to a glass substrate was used. The hydrophilic glass substrate 42 (coverslip) was decorated with silane using standard lithography to produce an area of hydrophobic dots (80 micrometer radius, 200 micrometer pitch) to create a hydrophobic stop 44, delimiting a track for the drops. (These hydrophobic dots are not necessarily scattering elements within the meaning of the present inventionthey are not used to influence the SAW, but to influence the interaction between the droplet and the substrate surface). A droplet 40 of 2 microliters of hydroxylamine hydrochloride (1.67 mM) and sodium hydroxide (3.33 mM) (pH 9.0) and a droplet of 2 microliters of silver nitrate (10 mM) were pipetted onto the substrate as shown in
(124) It is possible to integrate the on-chip formation of colloids with both surface enhanced Raman scattering (SERS) and surface enhanced resonance Raman scattering (SERRS) for sensitive bioanalyte detection. The inventors have shown that a slanted IDT, in which the lateral position of the SAW emission train is dependent upon the input frequency, can be used to design complex fluidic functions directly into a chip. The inventors have demonstrated the potential of this powerful tool to manipulate droplets and particles within droplets. In contrast to known techniques, a clear advantage of this flexible method lies in the ability to induce streaming in a droplet in a chosen direction and at any position. Whilst known techniques are also restricted to varying the input power to control the concentration of particles, the inventors have demonstrated that it is possible to control the concentration of particles in a droplet by shifting the position of the SAW (i.e. moving the lateral position of the SAW emission train), and hence its region of interaction with the droplet. The inventors also demonstrated that complex tasks can be programmed sequentially into a single IDT device, by demonstration that two droplets cab be moved, merged, mixed and centrifuged on a substrate (in this case a disposable glass substrate). This latter example shows the flexibility of the platform for basic fluidic operations needed in lab-on-a-chip technologies.
(125) In the field of SAW microfluidics it has been reported that the SAW Rayleigh wave, which normally propagates in the piezoelectric wafer, can be coupled into a disposable superstrate as a Lamb wave, providing a clear route by which lab-on-chip technology can be applied to low cost, point of care diagnostics. In this known configuration, the surface acoustic excitation in the piezoelectric wafer is usually coupled into the superstrate through a thin liquid film interface. The inventors have now demonstrated a new concept in SAW microfluidics, which combines the use of a separable substrate that is coupled to a transducer arrangement that includes a slanted finger IDT. In the devices described above, a disposable glass coverslip was used as the separable substrate. The inventors have provided a powerful method by which it is possible to handle droplets and particles in a programmable fashion, and have demonstrated, for example, droplet movement, merging and centrifugation, on the same substrate, with only the need to change the SAW excitation frequency to achieve a high degree of functional integration
(126) The present inventors have demonstrated the use of surface acoustic waves (SAW) to lyse cells and blood in microliter-sized droplets. Sample preparation is a key component of lab-on-chip systems (LOC). More particularly, cell lysis and blood handling are usually required for a wide range of biological assays in diagnostic applications. Recently, chemical-free mechanical methodologies overcame the limitations of translating traditional procedures, involving lytic agents and subsequent washes, on microfluidic platforms, that arose from the detrimental effects of the chemicals on the molecules to be analysed. However, these new techniques often require external pressure-driven systems that constrain their integration into standalone LOC systems, or the use of high energies (heat, electricity or ultrasonication) that may compromise the molecules. The present invention makes use of the acoustic pressure-fields and liquid streaming induced in a droplet by SAW. Methods according to the present invention carried out on biological samples resulted in the lysis of above 99.8% of all cells in the samples. The availability of intracellular material in the resulting suspension was studied with optical absorbance measurements and was comparable to a lab-based chemical procedure. The present inventors also demonstrated that the necessary conditions for lysis can be achieved using different SAW platforms, providing multiple routes to integrate sample preparation in a complete assay on a microchip.
(127) The present inventors show for the first time that cells in diluted whole blood can be lysed mechanically in a small droplet in a matter of seconds, using surface acoustic waves as the actuation mechanism. Cell lysis using acoustic energy was developed previously using ultrasonication (sometimes called sonication) either through harsh cavitation at high energies, or by using beads as crushing support. Proceeding differently here, the present inventors created a specific structure of pressure waves and shear stresses, both red blood cells and white blood cells can be lysed, without cavitation and without the addition of materials to the sample. The lysis efficiency of method of the invention was compared to chemical means by measuring the free haemoglobin in suspension, while the number of cells remaining after treatment showed a 95% lysis, comparable to other mechanical solutions.
(128) Interestingly, lysis was achieved in many configurations of SAW microfluidics (
(129)
(130) Surface acoustic waves were propagated on a LiNbO.sub.3 piezoelectric wafer. Upon reaching a droplet of liquid on the propagating surface, they are refracted as pressure waves inside the droplet at a specific angle depending on speed of sound in both materials. By adjusting the power input in the device and the surface tensions at the droplet pinning contact line, different wave amplitudes give rise to different phenomena, from streaming at low powers to movements, jetting and nebulisation in the high range. These behaviours are the result of the pressure field created in the droplet. Here the inventors made use of the pressure distribution inside the liquid when streaming is induced, to create vortexes. In their simplest states, these vortexes are used to concentrate particles in the centre of the droplet.
(131) When the power was increased, the conditions of pressures and shear stress at the centre of the vortexes were such that cells were crushed and mechanically disrupted, as shown in
(132) The vortexes used in this study were induced by a concentration streaming in the droplet, achieved when the propagating SAW symmetry was broken. Although it is not shown in the figures, lysis was also obtained when multiple vortexes were formed in other configurations where the SAW hit the droplet in a more symmetrical manner.
(133) In the above described embodiments, rotational streaming was induced in sample droplets by providing a SAW beam, or SAW emission train, to the droplet asymmetrically. In particular, the SAW beam provided to the droplet only partially overlapped with the droplet footprint, as shown schematically in
(134) The lateral width of the SAW beam, or SAW emission train, emitted by the transducer is determined by the lateral width of the aperture of the transducer (that part of the transducer which resonates). Whist it is understood that the edge of a SAW beam is not sharp (i.e. SAWs may propagate at lateral locations beyond the lateral width of the transducer aperture), as explained below, in the context of the present invention a SAW beam, or SAW emission train, is defined has having a lateral width that corresponds to the lateral width of the transducer aperture. For parallel electrode IDTs, this width corresponds to the lateral extent of overlap between electrode fingers (w,
(135) In the above described devices, the interdigitated transducers (IDT's) were designed to emit SAW's in Y cut Lithium Niobate propagating in the Z direction and therefore the emitted SAW beam should be diffractionless. The wavelength of the surface acoustic waves emitted from the DT's were of the order 400 micrometers where the length of propagation of the SAW prior to irradiating a droplet was never more than 75 wavelengths (near field), implying that diffraction and beam steering losses are not significant even for anisotropic mediums, where the direction of propagation is not along a principle axis. Assuming that the beam amplitude maxima of the emitted SAWs are commensurate with the IDT aperture then a 3 dB drop off in power would be observed less than 5 wavelengths away from the edge of the IDT aperture and by extrapolation 0 dB 10 wavelengths away from the edge of the aperture. Therefore it was possible to generate SAWs of useful power between 10 and 0 wavelengths from the edge of the aperture. The useful power is also be dependent on the amount of power applied to the IDT as this will directly influence the power available at the edge zones of the SAW beam.
(136)
(137) The inventors measured the cell lysis efficiencies achieved for droplets having different volumes when positioned on a hydrophilic spot having a diameter of 4 mm.
(138) The lysis of other cell types was demonstrated by processing both a mammalian cell line (HL60 cells, a model for chronic myeloid leukaemia), which is non-adherent and mechanically (i.e. in terms of size, shape and deformability) closer to white blood cells than red blood cells, and cultured trypanosomes (Trypanosoma cyclops, a model for parasite-born infectious diseases such as sleeping sickness), which is a motile organism. The inventors demonstrated that both these cell types can be lysed using SAW, thus confirming that the method of the invention is generally applicable to cells.
(139)
(140) The availability of intracellular material in the droplet solution after cell lysis on the SAW device was studied by spectroscopy. For blood samples, the inventors measured the absorbance of the solutions at different wavelengths to evaluate the presence of haemoglobin (414 nm and 540 nm) as well as total DNA (260 nm) and protein contents (280 nm). Haemoglobin is contained in red blood cells and is the most widely used marker of red blood cell lysis. Spectroscopy is used routinely to evaluate haemoglobin levels in plasma as a diagnostic tool for haemolysis.
(141)
(142) By varying the power of the SAW, it is possible to find conditions where the samples are only centrifuged and not lysed.
(143) For example, the cell lysis method of the invention can be integrated into a sequence of fluid manipulation steps including steps of moving, mixing, centrifuging, selectively concentrating, fractionating (i.e. selective concentration of species according to their size or mass) and nebulising (atomising) a droplet comprising live intact (unlysed) cells and/or lysed cells. A method comprising a series of steps comprising one or more droplet manipulation steps and one or more cell lysis steps may be conveniently performed on a microfluidics apparatus. One or more analysis steps may also be included, such as microscopic or spectroscopic analyses. In particular, a droplet comprising lysed cells, or downstream (e.g. fractionated) products of lysed cells, may be atomised to create a plume of atomised sample, which can be captured in ion-funnels to provide an innovative interface between low volume (e.g. single cell) biology and mass spectrometry. Analysis steps may include microarray-based analysis, for example of intracellular proteins or nucleic acids released from cells lysed according to the present invention. Analysis steps may include immunological detection steps (e.g. ELISA), gel electrophoresis, electrochemical detection, PCR or other amplification-based techniques. Such analysis may be of particular use in point-of-case diagnostic applications (e.g. to detect an intracellular molecule indicative of a pathogenic cell in the sample) and portable biosensors (e.g. to detect an intracellular molecule indicative of the presence of a biological contaminant or weapon in a sample)
(144) The dissipation of acoustic energy in a liquid droplet generates heat, increasing temperature, all the more so with increased viscosities. In configurations where a heat sink was not used (because the substrate was coupled to the piezoelectric transducer via a coupling medium), the temperature of blood droplets during the SAW actuation was recorded using an infrared camera, and confirmed that the lysis observed was not die to an increase in temperature in the droplet. For a 15 l sample of blood diluted 1:50 in PBS, and processed at 9 dBm on a slanted IDT, the temperature of the sample increased to around 40 C. in 5 s and 50 C. in 10 s, which is already a long timescale for SAW-based lysis (see
(145) Further details relating to the preferred embodiments of the method are set out below.
(146) The SAW was propagated on piezoelectric 128 Y-cut X-propagating 3 inch LiNbO.sub.3 wafers. For transmission microscopy, 4 inch double-sided polished wafers were used. The devices consisted of 20 pairs of electrodes to form an inter-digitated transducer (IDT) with a pitch of 200 micrometers, 100 micrometers width, and a 10 millimeter aperture, yielding a frequency of 10 MHz for the propagating SAW (measured as 9.61 MHz). The transparent slanted electrode IDT contained 20 pairs of electrodes, with a pitch from 150 micrometers at the highest frequency (13 MHz) and 222.5 micrometers at the highest frequency (9 MHz) at the lowest, with an aperture of 3 cm. The fingers width varied accordingly from 75 micrometers to 111 micrometers.
(147) The phononic crystal superstrate comprised a square array (pitch 203 micrometers) of circular holes (radius 82 micrometers) in a 470 micrometer-thick silicon wafer that scattered the SAW to obtain an asymmetry in the propagating waves. The specific mechanical forces acting on the cells arose from a rotational streaming in the droplet.
(148) The surface holding the sample droplet was patterned with a hydrophilic spot of 4 mm in diameter, surrounded by a silane (FOTS, Sigma), obtained by immersing the photoresist-patterned (AZ4562) wafer in a 1.6 mM silane solution in heptane (Sigma, H9629) for 10 min and dissolving the resist in acetone. This treatment resulted in a contact angle of 1070.2 (standard deviation) on silicon and 981.4 on LiNbO.sup.3. The hydrophilic spot prevents the droplet from moving at higher powers, but is not essential for lysis.
(149) The temperature of a droplet excited by a SAW can increase drastically, depending on the viscosity of the liquid [J. Kondoh, N. Shimizu, Y. Matsui, S. Shiokawa, Liquid Heating Effects by SAW Streaming on the Piezoelectric Substrate, IEEE transactions on ultrasonics, ferroelectrics, and frequency control, 2005, 52 (10)]. The heat generated was dissipated through a metal heat sink on which the piezoelectric device was pasted with a heat sink compound (RS Components Ltd., 554-311). In cases where the full heat dissipation is not possible (for example where the substrate was separable from the piezoelectric transducer, and coupled to it by a coupling medium), an infrared camera (FLIR i60, FLIR Systems) was used to evaluate the extent of heat increase on the device. As mentioned, lysis was achieved in different configurations, illustrated in
(150) When a substrate, either unpatterned or with a phononic lattice, that is separable from the piezoelectric wafer was used, it was placed on top of the piezoelectric wafer and coupled with 2-5 microliters of water in between, yielding water film approximately 50 micrometers thick. During experiments with blood, the wafer was placed in a transparent container for safety concern EDTA-chelated human whole blood (O.sup.+) was obtained from the Glasgow and West of Scotland Blood Transfusion Service and stored at 4 C. until needed. Samples were discarded after a week. HL60 cells (ATCC CCL-240, acute promyelocytic leukemia) were maintained following the supplier's recoomendations, in Dulbecco's RPMI media supplemented with 10% heat-inactivated fetal calf serum (FCS) and 5% penicillin-streptomycin, at 37 C. (5% CO.sub.2). Trypanosomes were maintained at 27 C. in Cunninghams media+20% FCS.
(151) Haemoglobin released from the red blood cells was quantified by measuring direct light absorption at 414 nm and 540 nm [E. Eschbach, J. P. Scharsack, U. John, L. K. Medlin, Improved Erythrocyte Lysis Assay in Microtitre Plates for Sensitive Detection and Efficient Measurement of Haemolytic Compounds from Ichthyotoxic Algae, J. Appl. Toxicol., 2001, 21, 513-519]. Although the standard methodology [Standard F756-08, Standard Practice for Assessment of Hemolytic Properties of Materials, ASTM, March 2009] uses 540 nm as the observation wavelength, it necessitates the intermediate step of adding a reagent to improve the signal, which also lyses the cells. In order to avoid the biais of an additional chemical lysis, a direct measurement was adopted. Total protein and DNA contents are reported by the absorbance of the samples at 260 nm and 280 nm.
(152) A range of blood dilutions was processed on the SAW system. Six samples of 20 microliters of each dilution were lysed at the power specified in the text at 8 dBm (0.8 W) collected (pooled) in an Eppendorf tube and diluted 5 times to fit in the spectrophotometer cuvette (500 microliters). The extent of lysis was compared to a chemical method. The diluted blood samples were mixed (1:1 v/v) with a solution of 6% (w/w) Triton X-100 (Sigma, T-9284) in PBS and agitated for 5 min. Finally a plasma sample was prepared by centrifuging the blood at 1000 g for 10 min.
(153) All samples were centrifuged at 1000 g for 10 min prior to measurement in the spectrophotometer (Hitachi, U-2000), which was blanked with PBS. The absorbance for the chemically lysed samples is reported after subtracting the value for a solution of 3% Triton X-100.
(154) The extent of lysis was also studied by counting the cells remaining intact after the SAW treatment. For experiments measuring lysis of blood cells (
(155) The preferred embodiments of the invention have been described by way of example. Modifications of these embodiments, further embodiments and modifications thereof will be apparent to the skilled person on reading this disclosure and as such are within the scope of the present invention.
Abbreviations
(156) ATP Adenosine triphosphate ADP Adenosine diphosphate cAMP Cyclic adenosine monoposphate ELISA Enzyme-linked immunosorbent assay IDT Interdigitated transducer (also known as an interdigital transducer) PBS Phosphate buffered saline PCR Polymerase chain reaction SAW Surface acoustic wave