Method of delivering PCR solution to microfluidic PCR chamber
09630158 ยท 2017-04-25
Assignee
Inventors
Cpc classification
B01L2300/0864
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/0867
PERFORMING OPERATIONS; TRANSPORTING
B01L3/5027
PERFORMING OPERATIONS; TRANSPORTING
B01F33/3039
PERFORMING OPERATIONS; TRANSPORTING
B01F33/3021
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/0816
PERFORMING OPERATIONS; TRANSPORTING
International classification
B01L7/00
PERFORMING OPERATIONS; TRANSPORTING
Abstract
The present invention relates to systems and methods of performing in-line mixing of assay components and delivery of such mixed components into microfluidic channels. In one aspect, a method of delivering mixed assay components is provided which comprises causing an unmixed primer solution to flow into a first mixing channel, the unmixed primer solution comprising a common reagent and a primer, holding the unmixed primer solution in the first mixing channel for at least a threshold amount of time to allow the unmixed primer solution to transition into a mixed primer solution, causing a buffer to flow into a second mixing channel, the buffer comprising the common reagent but not including a primer, and, after holding the unmixed primer solution in the first mixing channel for at least the threshold amount of time, drawing, from the first mixing channel, the mixed primer solution into a common exit channel.
Claims
1. A method of delivering a solution flow, comprising: causing a reagent and a primer to flow into a first mixing channel; stopping the reagent and the primer in the first mixing channel by keeping both ends of the first mixing channel at the same pressure for at least a threshold amount of time so as to allow the reagent and the primer to mix, thereby forming a reagent/primer mixture; causing a buffer to flow into a second mixing channel, the first and second mixing channels being located on a mixing chip, wherein the mixing chip is separate and in fluid communication with a PCR chip through an interface chip, wherein the PCR chip is configured for performing an amplification reaction; after holding the reagent and the primer in the first mixing channel for at least the threshold amount of time, drawing, from the first mixing channel, the reagent/primer mixture into a common exit channel located on the mixing chip; and adding DNA samples to the reagent/primer mixture while the reagent/primer mixture is in the interface chip.
2. The method of claim 1, wherein the threshold amount of time is the amount of time it takes for the reagent and the primer to mix by diffusion.
3. The method of claim 1, wherein the threshold amount of time is greater than 10 seconds.
4. The method of claim 1, wherein the first and second mixing channels are microfluidic channels and the common exit channel is a microfluidic channel.
5. The method of claim 4, wherein the microfluidic channels are formed on the mixing chip.
6. The method of claim 5, further comprising: configuring the mixing chip such that the common exit channel is in fluid communication with an input well of the interface chip.
7. The method of claim 6, wherein the interface chip is configured such that the input well located on the interface chip is in fluid communication with a plurality of DNA sample wells located on the interface chip.
8. The method of claim 7, further comprising connecting the interface chip with the PCR chip such that each of the plurality of the DNA sample wells located on the interface chip and input well of the interface chip are in fluid communication with an input well of the PCR chip.
9. The method of claim 1, further comprising: causing a buffer to flow into the first mixing channel after a least a portion of the reagent/primer mixture has been drawn out of the first mixing channel and into the common exit channel, the buffer comprising the reagent but not including a primer.
10. The method of claim 1, further comprising: while holding at least a portion of the reagent and the primer in the first mixing channel, holding the buffer in the second mixing channel; while holding at least a portion of the buffer in the second mixing channel, causing a reagent and a second primer to flow into a third mixing channel; holding the reagent and the second primer in the third mixing channel for at least a second threshold amount of time so as to allow the reagent and the second primer to mix, thereby forming a second reagent/primer mixture; after drawing the reagent/primer mixture into the common exit channel, drawing, from the second mixing channel, the buffer into the common exit channel; and after drawing, from the second mixing channel, the buffer into the common exit channel, drawing, from the third mixing channel, the second reagent/primer mixture into the common exit channel; wherein the buffer separates the first reagent/primer mixture from the second reagent/primer mixture within the common exit channel.
11. The method of claim 10, wherein the step of drawing the buffer into the common exit channel occurs substantially immediately after substantially all of the reagent/primer mixture exits the first mixing channel.
12. The method of claim 10, wherein the step of drawing the second reagent/primer mixture into the common exit channel occurs substantially immediately after substantially all of the buffer exits the second mixing channel.
13. The method of claim 10, wherein the first threshold amount of time and the second threshold amount are the same amount of time.
14. The method of claim 10, wherein the first threshold amount of time and the second threshold amount are different amounts of time.
15. A system for analyzing DNA, comprising: an apparatus for mixing a primer with a reagent, comprising: a reagent container; a primer container; an input channel in fluid communication with the reagent container and the primer container; a first mixing channel in fluid communication with the input channel; a second mixing channel in fluid communication with the input channel, the first and second mixing channels being located on a mixing chip, wherein the mixing chip is separate and in fluid communication with a PCR chip through an interface chip, wherein the PCR chip is configured for performing an amplification reaction; and a controller, wherein the controller is configured such that the controller is operable to put the apparatus in a state in which a reagent and primer are stopped in the first mixing channel by keeping both ends of the first mixing channel at the same pressure for a threshold amount of time so as to allow the reagent and the primer to mix, thereby forming a reagent/primer mixture, and a buffer is held in the second mixing channel, and the controller is further configured such that the controller (i) causes the reagent/primer mixture to be drawn out of the first mixing channel and into a common exit channel located on the mixing chip after the reagent and the primer has been held in the first mixing channel for at least a threshold amount of time, and (ii) causes DNA samples to be added to the reagent/primer mixture while the reagent/primer mixture is in the interface chip.
16. The system of claim 15, wherein the threshold amount of time is the amount of time it takes for the reagent and the primer to mix by diffusion.
17. The system of claim 15, wherein the threshold amount of time is greater than about 10 seconds.
18. The system of claim 15, wherein the first and second mixing channels are microfluidic channels and the common exit channel is a microfluidic channel.
19. The system of claim 18, wherein the microfluidic channels are formed on the mixing chip.
20. The system of claim 19, wherein the mixing chip is configured such that the common exit channel is in fluid communication with an input well of the interface chip.
21. The system of claim 20, wherein the interface chip is configured such that the input well located on the interface chip is in fluid communication with a plurality of DNA sample wells located on the interface chip.
22. The system of claim 21, wherein the interface chip is connected to the PCR chip such that each of the plurality of DNA sample wells located on the interface chip and input well of the interface chip are in fluid communication with an input well of the PCR chip.
23. The system of claim 15, wherein the controller is further configured such that the controller causes a buffer to enter the first mixing channel after the reagent/primer mixture exits the first mixing channel and before any other primer enters the first mixing channel.
24. The system of claim 15, wherein the apparatus further comprises a third mixing channel.
25. The system of claim 15, wherein the common exit channel is in fluid communication with one or more DNA sample wells of the interface chip, said DNA sample wells are in fluid communication with a microfluidic channel of the PCR chip, and a single microfluidic chip comprises the mixing chip, the interface chip and the PCR chip.
26. A system of for analyzing DNA, comprising: an apparatus for mixing a primer with a reagent, comprising: a reagent container; a primer container; an input channel in fluid communication with the reagent container and the primer container; a first mixing channel in fluid communication with the input channel; a second mixing channel in fluid communication with the input channel; a third mixing channel in fluid communication with the input channel, the first, second and third mixing channels being located on a mixing chip, wherein the mixing chip is separate and in fluid communication with a PCR chip through an interface chip, wherein the PCR chip is configured for performing an amplification reaction; and a controller, wherein the controller is configured such that the controller is operable to put the apparatus in a state in which a reagent and a first primer are held in the first mixing channel by keeping both ends of the first mixing channel at the same pressure for a threshold amount of time so as to allow the reagent and the first primer to mix, thereby forming a first reagent/primer mixture, a buffer is held in the second mixing channel, and a reagent and a second primer are held in the third mixing channel and form a second reagent/primer mixture, and the controller is further configured such that the controller (i) causes the first reagent/primer mixture to be drawn out of the first mixing channel and into the common exit channel after the reagent and the first primer have been held in the first mixing channel for at least the threshold amount of time; (ii) causes the buffer to be drawn out of the second mixing channel and into the common exit channel after drawing the first reagent/primer mixture into the common exit channel; (iii) causes the second reagent/primer mixture to be drawn out of the third mixing channel and into the common exit channel after drawing the buffer into the common exit channel and (iv) causes DNA samples to be added to the first reagent/primer mixture while the first reagent/primer mixture is in the interface chip; wherein the buffer separates the first reagent/primer mixture from the second reagent/primer mixture within the common exit channel.
27. The system of claim 26, wherein the controller is further configured such that the controller (i) causes a buffer to enter the first mixing channel after the first reagent/primer mixture exits the first mixing channel and before any other primer enters the first mixing channel, and (ii) causes a buffer to enter the third mixing channel after the second reagent/primer mixture exits the third mixing channel and before any other primer enters the third mixing channel.
28. A method of delivering a solution flow, comprising: causing a first fluid and a second fluid to flow into a first mixing channel; stopping the first fluid and the second fluid in the first mixing channel by keeping both ends of the first mixing channel at the same pressure for at least a threshold amount of time so as to allow the first fluid and the second fluid to mix, thereby forming a first fluid/second fluid mixture; causing a third fluid to flow into a second mixing channel, the third fluid comprising the first fluid but not including the second fluid, the first and second mixing channels being located on a mixing chip, wherein the mixing chip is separate and in fluid communication with a PCR chip through an interface chip, wherein the PCR chip is configured for performing an amplification reaction; after holding the first fluid and the second fluid in the first mixing channel for at least the threshold amount of time, drawing, from the first mixing channel, the first fluid/second fluid mixture into a common exit channel located on the mixing chip; and adding DNA samples to the first fluid/second fluid mixture while the first fluid/second fluid mixture is in the interface chip.
29. The method of claim 28, wherein the first fluid and the third fluid are the same fluid.
30. The method of claim 28, wherein the first fluid is a reagent and the third fluid is a buffer solution.
31. The method of claim 28, further comprising: while holding at least a portion of the first fluid and the second fluid in the first mixing channel, holding the third fluid in the second mixing channel; while holding at least a portion of the third fluid in the second mixing channel, causing a fourth fluid and a fifth fluid to flow into a third mixing channel; holding the fourth fluid and the fifth fluid in the third mixing channel for at least a second threshold amount of time so as to allow the fourth fluid and the fifth fluid to mix, thereby forming a fourth fluid/fifth fluid mixture; after drawing the first fluid/second fluid mixture into the common exit channel, drawing, from the second mixing channel, the third fluid into the common exit channel; and after drawing, from the second mixing channel, the third fluid into the common exit channel, drawing, from the third mixing channel, the fourth fluid/fifth fluid mixture into the common exit channel; wherein the third fluid separates the first fluid/second fluid mixture from the fourth fluid/fifth fluid mixture within the common exit channel.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1)
(2)
(3)
(4)
(5)
(6)
(7)
(8)
DETAILED DESCRIPTION OF THE EXEMPLARY EMBODIMENTS
(9) Solutions for use in PCR include components such as, for example, polymerase, primers, dNTPS and DNA sample. Before starting to run PCR in a microfluidic chamber, thorough mixing of these components in particular ratios is required, followed by the delivery of a particular volume of the mixture to the PCR chamber (e.g., microchannel). A challenge known in the art is the difficulty associated with in-line mixing of PCR components in the desired ratios followed by the delivery of a particular volume to a microfluidic PCR chamber, such as a microchannel. Reagents, primers and buffers useful in performing PCR amplifications are well known to the skilled artisan or as described herein.
(10)
(11) While
(12) In some embodiments, a function of mixing chip 110 is to proportionally mix primers 104 and other reagents 102 common to the desired assay. The common reagents 102 and primers 104 are drawn into a mixing region 106 via channel 105 and then held there for an amount of time, after which, the resulting mixture (a.k.a., reagent/primer mixture), which may or may not be homogeneous, is drawn into an exit channel 107 connected to exit port 108. There are several ways in which reagents 102 and primers 104 may be drawn into mixing region 106. For example, in one embodiment, the primer 104 and reagent 102 may be drawn into the mixing channel laminarly (i.e., the primer 104 and reagent 102 may be side by side as they are drawn into the channel). In another embodiment, an amount of primer 104 may be drawn into the channel first, followed by an amount of reagent 102 (or vice versa), followed by another amount of primer 104, etc.
(13) Without external disruption, the mixing of the primer 104 and reagent 102 within mixing region 106 is controlled by diffusion. Therefore, to ensure that adequate mixing takes place in mixing region 106, the primer 104 and reagent 102 should be held in mixing region 106 for some particular, threshold amount of time. In some embodiments, the threshold amount of time can be a function of the amount of time it takes for the reagent 102 and the primer 104 to mix by diffusion. Thus, the threshold amount of time will be influenced by the amount of the fluids that are to be mixed, and by the size of the mixing region in which they are contained. In some embodiments, the threshold time may be at least 10 seconds, although it is envisioned that certain systems may require a longer or shorter threshold time.
(14) Further aspects of mixing chip 110 are illustrated in
(15) Referring now to
(16) As discussed above, to ensure that adequate mixing takes place in mixing region 106, the primer 104 and reagent 102 should be held in mixing region 106 for some particular amount of time. To decrease the length of this time, the present invention provides an approach whereby, one at a time, each mixing channel 301 is filled (fully or partially) with an unmixed primer solution (e.g., a solution containing primer 104 and reagent 102) or a buffer (e.g., common reagent 102 and no primer 104) and then, at some later point in time (e.g., several seconds to minutes later), on a first-in-first out (FIFO) basis, the solution in each mixing channel is drawn out of the mixing channel and into to the common exit channel 107, where the solution will flow to exit port 108 so that it can be introduced, for example, into interface chip 120. As also discussed above, there are several ways in which an unmixed primer solution may flow into a mixing channel. For example, in one embodiment, the unmixed primer solution may flow into a mixing channel by drawing the primer 104 and reagent 102 into the mixing channel laminarly (i.e., by drawing the primer 104 and reagent 102 into the mixing channel such that the primer 104 and reagent 102 flow substantially side by side into the channel). In another embodiment, the unmixed primer solution may flow into a mixing channel by first drawing an amount of primer 104 into the channel followed by drawing into the channel an amount of reagent 102 (or vice versa).
(17) In one embodiment of this system, each of the mixing channels may be coupled to one or more independent pressure controllers (e.g., vacuum pressure controllers or other pressure controllers) in order to start and stop the flow of fluid into and out of each of the channels. For example, as shown in
(18) As a specific, non-limiting example, chip 110 may be operated such that a first unmixed primer solution flows into mixing channel 1 (see
(19) After the first unmixed primer solution has been held in mixing channel 1 for at least the threshold amount of time, the first solution, which at this point should be a reagent/primer mixture, may be drawn out of channel 1 and into exit channel 107, from which the reagent/primer mixture will flow, for example, to the next chip (e.g., interface chip 120) via exit port 108 or to another area of the mixing chip 110 where further mixing and/or assays will occur.
(20) Next, the buffer in channel 2 is drawn out of channel 2 and into exit channel 107. Next, after the second unmixed primer has been held in mixing channel 3 for at least the threshold amount of time, the second solution, which at this point should be a reagent/primer mixture, may be drawn out of channel 3 and into exit channel 107. Next, the buffer in channel 4 is drawn out of channel 4 and into exit channel 107. Next, after the third unmixed primer solution has been held in mixing channel 5 for at least the threshold amount of time, the third solution, which at this point should be a reagent/primer mixture, may be drawn out of channel 5 and into exit channel 107.
(21) On the next cycle, it is preferred that each mixing channel that held a primer solution (i.e., a solution comprising the reagent and a primer) in the last cycle should hold a buffer and vice versa (but this is not a requirement). That is, sequentially, all of the primer solutions originally held in the mixing channels will be replaced by a buffer, and all of the buffers originally held in the mixing channels will be replaced by a primer solution, thereby reducing or eliminating contamination and ensuring that each of the primer solutions are separated by plugs of buffer as they travel throughout the remaining channels.
(22) Accordingly, in the next cycle, mixing chip 110 may be operated such that, first, the buffer is forced into mixing channel 1. Next, the first unmixed primer solution is forced into mixing channel 2 and is held there for at least the threshold amount of time. Next, the buffer is forced into mixing channel 3. Next, the second unmixed primer solution flows into mixing channel 4 and is held there for at least a threshold amount of time. Next, the buffer is forced into mixing channel 5. After the first unmixed primer solution has been held in mixing channel 2 for at least the threshold amount of time, thereby becoming a reagent/primer mixture, the buffer in mixing channel 1 is drawn out of channel 1 and into exit channel 107. Next, the first reagent/primer mixture may be drawn out of channel 2 and into exit channel 107. Next, the buffer in channel 3 is drawn out of channel 3 and into exit channel 107. Next, after the second unmixed primer solution has been held in mixing channel 4 for at least the threshold amount of time, thereby becoming a reagent/primer mixture, the second reagent/primer mixture may be drawn out of channel 4 and into exit channel 107. Next, the buffer in channel 5 is drawn out of channel 5 and into exit channel 107. While
(23) The above described process will produce a solution flow as shown in
(24) As discussed above, each of the mixing channels may be coupled to one or more independent pressure controllers 406c-g in order to start and stop the flow of fluid into and out of each of the channels. Additionally, as shown in
(25) In some embodiments, to fill and to empty the channels 301 in the FIFO manner described above, main controller 490 controls the pressure controllers 406a-g as follows. First, to fill channels 1, 2 or 3, pressure controller 406a is configured to create a negative pressure, which will cause the fluid to flow up transverse channel 303 in the direction of controller 406a. When the fluid reaches the junction of transverse channel 303 and the mixing channel into which the fluid is desired to flow, pressure controller 406a may be configured to cease creating the negative pressure. At the same time, main controller 490 may control one or more pressure controllers (e.g. pressure controllers 406c-e) such that the pressure at the end of the desired mixing channel that is connected to channel 303 is higher than the pressure at the other end of the mixing channel, thus creating a pressure differential. This pressure differential should cause the fluid to flow into the desired channel from the transverse channel 303. When the mixing channel is filled as desired, controller 490 may control the system such that the pressure at the end of the mixing channel that is connected to transverse channel 303 (e.g. the end of mixing channel 2 connected transverse channel 303) is equal to the pressure at the other end of the mixing channel (e.g. the other end of mixing channel 2 connected transverse channel 305).
(26) Similarly, to fill channels 4 or 5, pressure controller 406b is configured to create a negative pressure, which will cause the fluid to flow down transverse channel 303 in the direction of controller 406b. When the fluid reaches the junction of transverse channel 303 and the mixing channel into which the fluid is desired to flow, pressure controller 406b may be configured to cease creating the negative pressure. At the same time, main controller 490 may control one or more pressure controllers (e.g. pressure controllers 406f-g) such that the pressure at the end of the desired mixing channel that is connected to channel 303 is higher than the pressure at the other end of the mixing channel, thus creating a pressure differential. This pressure differential should cause the fluid to flow into the desired mixing channel from the transverse channel 303.
(27) As discussed above, to hold a solution in a particular mixing channel, main controller 490 need only control pressure controllers 406 such that the pressure at one of the channels equals the pressure at the other end.
(28) In some embodiments, to draw a fluid out of a channel and into exit channel 107, main controller 490 adjusts one or more pressure controllers 406 such that (i) the pressure at the left end of a channel (i.e., the end connected to transverse channel 303) is greater than the pressure at the other end of a channel (i.e., the end connected to transverse channel 305), and (ii) the pressure at the end of a channel that is connected to transverse channel 305 is greater than the pressure at outlet port 108. For example, to draw a fluid out of channel 2 and into exit channel 107, main controller 490 adjusts pressure controller 406d such that (i) the pressure at the left end of channel 2 (i.e., the end connected to transverse channel 303) is greater than the pressure at the other end of channel 2 (i.e., the end connected to transverse channel 305), and (ii) the pressure at the end of channel 2 that is connected to transverse channel 305 is greater than the pressure at outlet port 108. At the same time, to keep the fluids in the other channels from being drawn out of those channels, main controller 490 controls the system such that, for each channel, the pressure at one end of the channel equals the pressure at the other end.
(29) As discussed above, the unmixed primer solution to be introduced into a mixing channel may initially be subject to laminar flow. In order to ensure that both the reagent 102 and primer 104 are drawn into the same mixing channel in the necessary amounts, in accordance with one embodiment, the flow of fluid in the transverse channel 303 is stopped prior to drawing off the fluid into a mixing channel. In accordance with this embodiment, both the reagent 102 and primer 104 are allowed to be drawn off together. This is depicted in
(30) As will also be apparent, while the present invention has been described herein as being used in a multi-chip format, the methods and systems for in-line mixing can be utilized anywhere mixing within a channel is desired, including wherein all mixing, assays, and analysis occur on a single microfluidic chip (see, e.g.
(31) While various embodiments of the present invention have been described above, it should be understood that they have been presented by way of example only, and not limitation. Thus, the breadth and scope of the present invention should not be limited by any of the above-described exemplary embodiments. Additionally, while the processes described above are shown as a sequence of steps, this was done solely for the sake of illustration. Accordingly, it is contemplated that some steps may be added, some steps may be omitted, and the order of the steps may be re-arranged.